CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007435	Burkholderia pseudomallei 1710b chromosome II, complete sequence	3 crisprs	cas3,csa3,DinG	0	0	5	0
NC_007434	Burkholderia pseudomallei 1710b chromosome I, complete sequence	2 crisprs	DEDDh,PD-DExK,DinG,csa3,cas3,WYL	0	2	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007435_1

45239-45403

Orphan

Consensus_repeat	Method
GCGAGCGCGGCGAGCGCGGCCGCG	PILER-CR

2 spacers

The CRISPR arrays of NC_007435_1

>merge|NC_007435|1|45239-45403|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGACAGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCGGCGAGCGCGGCCGCGCGATGGGCGCCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCGGCGAGCACGGCCGCG

>NC_007435|1|1|45239-45403|PILER-CR
GCGAGCGCGGCGAGCGCGGCGGAC	AGGCCGCTCGCGACATAGCTCGACGCGACGTAGCGGCGCGCGTCGACGCCCGCG
GCGAGCGCGGCCGCGCGATGGGCG	CCGAGCGCGTGCAGCGCGAGCCCGTAACGGGTGCGATGGGCGAGCGCG
GCGAGCACGGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007435.1\|WP_004528275.1\|36710_37535_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NC_007435.1\|WP_004199295.1\|36018_36177_+\|lipoprotein	unknown	unknown	gnl\|CDD\|380215
NC_007435.1\|WP_076804830.1\|41310_43764_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NC_007435.1\|WP_004184766.1\|55258_56653_-\|heavy-metal-sensor-histidine-kinase-IrlS	unknown	unknown	gnl\|CDD\|273593
NC_007435.1\|WP_122652957.1\|46037_48545_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NC_007435.1\|WP_004524116.1\|39481_39991_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NC_007435.1\|WP_004528283.1\|48568_49066_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004199294.1\|36192_36714_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NC_007435.1\|WP_004528276.1\|37598_38585_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NC_007435.1\|WP_004524124.1\|50664_51924_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NC_007435.1\|WP_004543649.1\|54698_54899_-\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004528277.1\|38624_38984_+\|lipoprotein	unknown	unknown	gnl\|CDD\|226765
NC_007435.1\|WP_004528289.1\|54891_55164_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NC_007435.1\|WP_009968316.1\|50250_50502_-\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_038724247.1\|53989_54238_-\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004528285.1\|52127_53597_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NC_007435.1\|WP_004524118.1\|43982_44963_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
NC_007435.1\|WP_011205512.1\|49176_49917_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NC_007435.1\|WP_120184022.1\|39204_39423_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004524117.1\|39987_40992_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622

Protein	Function_ID	Function_description	E-value
NC_007435.1\|WP_004528275.1\|36710_37535_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	1.07062e-18
NC_007435.1\|WP_004199295.1\|36018_36177_+\|lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	0.00455838
NC_007435.1\|WP_076804830.1\|41310_43764_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	4.3457e-86
NC_007435.1\|WP_004184766.1\|55258_56653_-\|heavy-metal-sensor-histidine-kinase-IrlS	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NC_007435.1\|WP_122652957.1\|46037_48545_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	6.553e-176
NC_007435.1\|WP_004524116.1\|39481_39991_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	7.12237e-71
NC_007435.1\|WP_004199294.1\|36192_36714_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	2.21088e-40
NC_007435.1\|WP_004528276.1\|37598_38585_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	9.82698e-29
NC_007435.1\|WP_004528277.1\|38624_38984_+\|lipoprotein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	2.7211e-31
NC_007435.1\|WP_004528289.1\|54891_55164_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	8.1966e-09
NC_007435.1\|WP_004528285.1\|52127_53597_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.49614e-36
NC_007435.1\|WP_004524118.1\|43982_44963_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	3.78293e-52
NC_007435.1\|WP_011205512.1\|49176_49917_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.08543e-14
NC_007435.1\|WP_004524124.1\|50664_51924_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	3.81867e-137
NC_007435.1\|WP_004524117.1\|39987_40992_+\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.1512e-74

>NC_007435.1|WP_004524118.1|43982_44963_-|ABC-transporter-permease
MRDATDRLSRFAALGALAAVLAFFAVAAPGFATLANVERVLVNNFALLAIAALGMTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALERSTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG
>NC_007435.1|WP_076804830.1|41310_43764_+|TonB-dependent-receptor
MHAPCMPQFAPRRVVARVAAAALFSACAAPGVSGAAEPAAATRGYDIPAGPLDAALTRFGREAGILLSFPGELTTGLRSPGLHGRADPAAALDRLLTGTGLVALRQPSGGYTLARLPGPAAAGADAALAADTTLPTVAVRASGPHADSYRPPREAAGLRSDAPLAEVPQAVAIVAQQVLRDQRPRNLDDALANVSGITQGNTLGSTQDTVMKRGFGDNRDGSVMRNGMPIVQGRSLNATTDSVEVLKGPASLLYGIMDPGGVINVVTKQPQLARRHAISALGSTYGGGRNGGELTFDSTGAIGESRVAYRLIVDQTNEQYWRNYGEHRETLVAPSLAWYGRDTQMVLSYEYRRFLMPFDRGTALDPRTNAPLAIPARRRLDEPFNDMRGESNLAQLAIDHQLAPDWKVHVGYSYNRETYDANQIRITAVDPLKGTLTRSNDATHGSRSTDSYGIAYVDGRVTLAGMRHDVQFGVDGEYRQVYRADMLRQPIKTPFSYLNPTYGLVPPSTSVSASDSDQSDTLHTASLFFQDSIHLSERWMLVGGARWVRYSQLAGRGRPFQVNTNLSGTKWLPRAGIVYKWNDALSLYGSYTQSLKPTSKIAPMAGGYVIDGSTAPEEGASWELGAKLDMPGGLAGTLAFFDIDKKHVLVSQYDDATNQTAWRTSGRARSRGIELDVSGRIGARWNVIASYAYIDAKTTEDPLYAGNRLWNVARHTASLAAVYDVGTVLGGDDLRIGAAGRYVGARPGDSANSFTLPAYATADAFATYDTRLGKQKLQFQLNVKNLFNRTYYPSSVNRFFVSVGDARQVSLLTTLQF
>NC_007435.1|WP_004524117.1|39987_40992_+|FecR-family-protein
MSGAKPAGGPPAVPERVARRAVQWWVELGAAPASDATRARLARWRAEHPAHDAAWRHIEAVNGRLGHVASALSARAARAALLPPRSRGRRAALKALAVLLFAGGGAWTGQAYLPWRAWGADVRTALGERRTITLADGTTVVLNTDTAIDIRFDDATRGVRLLRGEIMVTSGRDAARAVPRALVIATAHGDVRPVGTRFSVRERGDATRVDVFDGAVRIAPRRAVGRAPLITAGHGADFTRDALAGPPRVLGASAGAWVDGILVASNLRLADLLAEIDRYRPGRVRCDAAVANLRVSGTYPLDDTDRILDTLRETLPVDVEYLSRYWVTVVAARD
>NC_007435.1|WP_004524116.1|39481_39991_+|sigma-70-family-RNA-polymerase-sigma-factor
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
>NC_007435.1|WP_120184022.1|39204_39423_+|hypothetical-protein
MGHGRGPFVARSRRRRSRDFPPERRIGEPRSARAGRAGAPLRRGGRASRATQASRRPTDRADAFTVRLQICI
>NC_007435.1|WP_004528277.1|38624_38984_+|lipoprotein
MIRNVLIALVCAAPVAALAEPPKAAGGMIVDDDGMTLYTFDRDTMPGKSACTGGCTANWPAALADAYDKPGGDLGFIAAAGGKHQWTYKGRPLYRFSGDAKPGQHTGDGFGGMWHVARP
>NC_007435.1|WP_004528276.1|37598_38585_+|YceI-family-protein
MDAAGSFASFAATLACALSAWLAPSAGIAQTAWPPDAPRVAGASGPPRTPGLARTPAAVTDAPGAATAGALAASPPAATRYRLDPRHSGVTFRVDNFWHAHLTMRFARMRAELSHVGDDRLASRVDVTVDAASLGANVPFVAALVKGSAMLDVARYPEIRFVGTRFERTGATTGVLTGELTIRAMTRPITLAVRFDAGRQLEPDTGARAEREGDESGESGESNPAERRAGQGRRAAELRDGRPRDAGPGVADSRDAMRRETDSGSAHRGAEPPERIARAAPDAARPLAFVADGHFSRTAFGLSRWLPAVGDDVRLRIRAEFVRARADP
>NC_007435.1|WP_004528275.1|36710_37535_+|anti-sigma-factor
MSDDPDLCVAPESDEPGLLALSAFVDGELPDAQSRAMARRLASDPRAAGIAAHYRAQRAALRALFADPVAPRHGPCVAWPVRTPWWRRAAFAGGALAAGVALGWLGGALAPRFAPSAALQWVAPAAAQRAFARDADLAYALYAPDARHPVEIAAGRDGAPLAWLSARVGRRIAAPSLREYGFALLGARLLPGAGGPAAQFMYENAAGERLALYVSASAQREAAVRPWRDGGRHTFYWVSERTAYALSGQLDEGRLRTIAADVCGELGGHPQRWR
>NC_007435.1|WP_004199294.1|36192_36714_+|sigma-70-family-RNA-polymerase-sigma-factor
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
>NC_007435.1|WP_004199295.1|36018_36177_+|lipoprotein
MESIRMLSAACALLALMLAAGCASPGDMSPSDHAAPMGGYGRGGGSGGGGGY
>NC_007435.1|WP_122652957.1|46037_48545_-|ATP-binding-cassette-domain-containing-protein
MPRPLPSLARLLSMLFAVALAIGAAPACASPAAGAAPPGPRAGHAPLSLAGKRIGITAAGTDHYWDLQAYQGAVDEVKRLGGTPIALDAGRNDSRQIAQIQTLIAQQPDAIIEQLGTASVLEPWLRKIRQAGIPLFTIDTASPSSLNVVTSDNFAIGSQLALKLVNDIRGEGNVLVFNGFYGVPVCAIRYDQLKAVLKWYPKVKIIEPELRDVIPNTAQNAYAQISQLLQKYPKGAISAIWAAWDIPQVGATQAVDVRRVVKRFGGVAALRGASLAVTRGTVHGLIGQNGAGKSTLVKLLAGLHAPDEGEITVGGVPFASGGGGSRAPAGAARRHSTGIGFIHQERLLPATFTVAEALFFPHPPTLGGRASRLARLLPLDVKRMRRDCRAVLHTQFGLDLAPDRLIGELSVAEQQIVQITRALLGRHEILVFDEPSAALVSSEVDRLLRTIERLRANGHTILYVSHYLDEIARVCDRVSVLRDGADVAHFEARAVSRDTLVAAMIGAPQPAAAAPSAATARAAARADARVSARADAWGDDAHRAPAGADPARPGARAAPGAIALEARDLALPGRFGPLSLAVRRGEIVGLTGGLGSGGKDVIRALFGLARGVRGSIAVDGRPARVRRPHDAVAHGIALVPENRAAHGVALTLPVRENVVLADLSSVSRFGLVHGRREADVARALIRRLDIRPARPDLPARFLSGGNQQKVALAKWLGRASTVYLLDEPTVGVDVGAKAQIYRLIDALARAGAAVLLFSSDLTELLDVTDRVYVMARGEIVAQCASAETTTRDVLAWATRARDARPGGGAGAHDAAARTGTPGAAGAASSAAKVAT
>NC_007435.1|WP_004528283.1|48568_49066_+|hypothetical-protein
MEANERFCATTPAKGTIDSCFGYGMAANARAAQAKMRGGHRTRPARALAGPAASRASMPTPISVGTRDRRRVVSIGIGQSQINFSAMLNKPDDAPLNRKRLIAGQSENAAARAASNETKSSRKRSARAKFRAGMLENPYEGPPRRMIRRGGGAARFDGDFANGCI
>NC_007435.1|WP_011205512.1|49176_49917_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MRRTGVFAMEHEVRPSMATTRRHATATALAAAARPCAAPHADSFLGILIEVFARVVAALALGVFAYAAYLQWRLDPSRITLILLAVSTTLTVGLSLFAEPPKKRDWSPLALFFSVGGTFYYLVFQLTASRQLLPEAAGAAIQLIGLFWQLFAKVSLRKSFGILPANRGIVSRGAYRFVRHPMYLGYLIIDAGFLLTNFSARNLIAVALQIGLQLGRIRREERLLSEDAAYRAYRRSVRYRVIPGLF
>NC_007435.1|WP_009968316.1|50250_50502_-|hypothetical-protein
MFSTLSHVLPRVALLGEPLANAPFVDGEITRPFRDGFWLLPHSTLCLPLAASDMVIVEPDWPGSAGALAGRQLDAGRQSPSPL
>NC_007435.1|WP_004524124.1|50664_51924_-|monooxygenase
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLFHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARGGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
>NC_007435.1|WP_004528285.1|52127_53597_-|MFS-transporter
MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAAPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA
>NC_007435.1|WP_038724247.1|53989_54238_-|hypothetical-protein
MKAPIIAIAFGIALAACAPLRQDSRSGEAGSPIAAPNRGGGNTPPSGARRAANEVVDYAGRPCVNQTLYVKTHPCIFPRLQR
>NC_007435.1|WP_004543649.1|54698_54899_-|hypothetical-protein
MFIASSPSSGSLSDDSCLYFERRAVRNHERAMTNPSSARGAASSARADASMTRISCSRQRGAAAMP
>NC_007435.1|WP_004528289.1|54891_55164_+|DUF4148-domain-containing-protein
MNTKTTIVWATAAALTALALSPAAFAQGKTRDEVRQELIRAQHEGVVPAGKNDYPPSAALVARNKELHAISVHGGKTDLALDQHDQTLAR
>NC_007435.1|WP_004184766.1|55258_56653_-|heavy-metal-sensor-histidine-kinase-IrlS
MIRRLLPRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANVANVDDIPRKSDLWIDQLHGHQNLDLAIYDTDGRLRFATRGFVAPRPALGAPQTRVPASAAPAGATFSYLADDAPLRGGNPRTARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGELKEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFLARSDNAQSHLAIRTLDAAAQAERVAGYYEPMAEDAEVSIVVRGKAEVRADALLYHRALSNLISNALNHAPRGSTITIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHNSASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFWLKFPAHAA

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Crispr_ID: NC_007435_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007435_2

1318232-1318324

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007435_2

>merge|NC_007435|2|1318232-1318324|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NC_007435|2|1|1318232-1318324|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007435.1\|WP_004529180.1\|1314956_1315805_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NC_007435.1\|WP_004530245.1\|1307019_1308144_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_007435.1\|WP_004524985.1\|1319485_1319794_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NC_007435.1\|WP_011326287.1\|1303768_1307017_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NC_007435.1\|WP_004188221.1\|1320274_1320730_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NC_007435.1\|WP_004529178.1\|1313696_1314722_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NC_007435.1\|WP_004524990.1\|1310460_1312026_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NC_007435.1\|WP_004529174.1\|1308293_1310129_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_007435.1\|WP_004529181.1\|1315801_1317796_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NC_007435.1\|WP_004188840.1\|1322666_1324460_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NC_007435.1\|WP_004529183.1\|1320719_1322306_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NC_007435.1\|WP_050020039.1\|1324443_1325874_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NC_007435.1\|WP_004187346.1\|1318787_1319489_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NC_007435.1\|WP_004529184.1\|1325870_1327049_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NC_007435.1\|WP_004524981.1\|1322277_1322535_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004187193.1\|1318542_1318791_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NC_007435.1\|WP_004529182.1\|1319786_1320278_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NC_007435.1\|WP_004524989.1\|1312566_1313076_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004529175.1\|1310210_1310369_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_050773510.1\|1313133_1313637_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007435.1\|WP_004529180.1\|1314956_1315805_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.01746e-33
NC_007435.1\|WP_004524985.1\|1319485_1319794_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NC_007435.1\|WP_011326287.1\|1303768_1307017_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.32975e-92
NC_007435.1\|WP_004188221.1\|1320274_1320730_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NC_007435.1\|WP_004529178.1\|1313696_1314722_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_007435.1\|WP_004524990.1\|1310460_1312026_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NC_007435.1\|WP_004187346.1\|1318787_1319489_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NC_007435.1\|WP_004529181.1\|1315801_1317796_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NC_007435.1\|WP_004188840.1\|1322666_1324460_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NC_007435.1\|WP_004529183.1\|1320719_1322306_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NC_007435.1\|WP_004529174.1\|1308293_1310129_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.08999e-132
NC_007435.1\|WP_004529184.1\|1325870_1327049_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NC_007435.1\|WP_050020039.1\|1324443_1325874_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NC_007435.1\|WP_004187193.1\|1318542_1318791_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NC_007435.1\|WP_004530245.1\|1307019_1308144_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	4.38049e-26
NC_007435.1\|WP_004529182.1\|1319786_1320278_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	6.86601e-17

>NC_007435.1|WP_004529181.1|1315801_1317796_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSCEVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVDAEAEARHKR
>NC_007435.1|WP_004529180.1|1314956_1315805_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NC_007435.1|WP_004529178.1|1313696_1314722_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NC_007435.1|WP_050773510.1|1313133_1313637_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHPGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYSGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NC_007435.1|WP_004524989.1|1312566_1313076_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NC_007435.1|WP_004524990.1|1310460_1312026_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NC_007435.1|WP_004529175.1|1310210_1310369_+|hypothetical-protein
MRARRSHGAGIRLGFDKPSGAHSSTHDGWVQTDIAMRLLQISLMPDQALANE
>NC_007435.1|WP_004529174.1|1308293_1310129_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NC_007435.1|WP_004530245.1|1307019_1308144_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NC_007435.1|WP_011326287.1|1303768_1307017_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSDVGSDVASEAGPEAGLAASAESGAERAREPAADITADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHELYSQFWPLAACVPVILGATILLLKKQER
>NC_007435.1|WP_004187193.1|1318542_1318791_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NC_007435.1|WP_004187346.1|1318787_1319489_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NC_007435.1|WP_004524985.1|1319485_1319794_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NC_007435.1|WP_004529182.1|1319786_1320278_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NC_007435.1|WP_004188221.1|1320274_1320730_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NC_007435.1|WP_004529183.1|1320719_1322306_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NC_007435.1|WP_004524981.1|1322277_1322535_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NC_007435.1|WP_004188840.1|1322666_1324460_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NC_007435.1|WP_050020039.1|1324443_1325874_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NC_007435.1|WP_004529184.1|1325870_1327049_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NC_007435_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007435_3

1731068-1731213

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_007435_3

>merge|NC_007435|3|1731068-1731213|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NC_007435|3|2|1731068-1731213|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NC_007435|3|2|1731118-1731203|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007435.1\|WP_004523279.1\|1737514_1738546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NC_007435.1\|WP_004200705.1\|1741737_1742391_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NC_007435.1\|WP_004529497.1\|1740829_1741279_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NC_007435.1\|WP_004553972.1\|1733333_1735118_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NC_007435.1\|WP_004529487.1\|1727633_1729907_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NC_007435.1\|WP_076804964.1\|1724954_1725386_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004205322.1\|1723844_1724780_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NC_007435.1\|WP_004529498.1\|1742460_1742895_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_007435.1\|WP_004529490.1\|1731789_1733061_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NC_007435.1\|WP_004187469.1\|1730039_1730435_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NC_007435.1\|WP_004529500.1\|1744507_1746313_-\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235730
NC_007435.1\|WP_009950893.1\|1721298_1721604_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240624
NC_007435.1\|WP_004523287.1\|1725685_1727344_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_007435.1\|WP_004529493.1\|1735192_1737004_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NC_007435.1\|WP_004529495.1\|1738542_1740375_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NC_007435.1\|WP_004200700.1\|1722431_1723547_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NC_007435.1\|WP_004529480.1\|1720640_1720931_+\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_011204702.1\|1743300_1744428_-\|porin	unknown	unknown	gnl\|CDD\|238208
NC_007435.1\|WP_009927403.1\|1723607_1723718_-\|hypothetical-protein	unknown	unknown	unknown
NC_007435.1\|WP_004529483.1\|1721689_1722130_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863

Protein	Function_ID	Function_description	E-value
NC_007435.1\|WP_004523279.1\|1737514_1738546_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	3.7258e-30
NC_007435.1\|WP_004200705.1\|1741737_1742391_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NC_007435.1\|WP_004529497.1\|1740829_1741279_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.75995e-51
NC_007435.1\|WP_004553972.1\|1733333_1735118_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NC_007435.1\|WP_004529487.1\|1727633_1729907_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	7.5874e-57
NC_007435.1\|WP_004205322.1\|1723844_1724780_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NC_007435.1\|WP_004529498.1\|1742460_1742895_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NC_007435.1\|WP_009950893.1\|1721298_1721604_-\|hypothetical-protein	gnl\|CDD\|240624	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor. The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.	0.0059154
NC_007435.1\|WP_004187469.1\|1730039_1730435_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NC_007435.1\|WP_004200700.1\|1722431_1723547_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NC_007435.1\|WP_004523287.1\|1725685_1727344_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.19137e-37
NC_007435.1\|WP_004529500.1\|1744507_1746313_-\|fatty-acid--CoA-ligase	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0
NC_007435.1\|WP_004529495.1\|1738542_1740375_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.89028e-107
NC_007435.1\|WP_004529493.1\|1735192_1737004_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	2.50092e-74
NC_007435.1\|WP_011204702.1\|1743300_1744428_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.6975e-55
NC_007435.1\|WP_004529490.1\|1731789_1733061_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	3.22394e-113
NC_007435.1\|WP_004529483.1\|1721689_1722130_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.19676e-25

>NC_007435.1|WP_004187469.1|1730039_1730435_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NC_007435.1|WP_004529487.1|1727633_1729907_-|pyridine-nucleotide-disulfide-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGCDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NC_007435.1|WP_004523287.1|1725685_1727344_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NC_007435.1|WP_076804964.1|1724954_1725386_+|hypothetical-protein
MHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NC_007435.1|WP_004205322.1|1723844_1724780_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NC_007435.1|WP_009927403.1|1723607_1723718_-|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NC_007435.1|WP_004200700.1|1722431_1723547_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NC_007435.1|WP_004529483.1|1721689_1722130_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDEHRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NC_007435.1|WP_009950893.1|1721298_1721604_-|hypothetical-protein
MRHDSRLRCTRDDDDIDQCHRQSGRSPLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQAMARRARPPA
>NC_007435.1|WP_004529480.1|1720640_1720931_+|hypothetical-protein
MRHACRACGPRVRHTRFCAMRKRGETHGRSLSLNLARRATDARRARCPHSRHELCTRARAPARERRRCIASRISLITTINFRAVAFRPRLPKHYID
>NC_007435.1|WP_004529490.1|1731789_1733061_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPQRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGPRWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NC_007435.1|WP_004553972.1|1733333_1735118_+|ribonucleotide-reductase
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NC_007435.1|WP_004529493.1|1735192_1737004_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLARALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDHSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NC_007435.1|WP_004523279.1|1737514_1738546_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGFAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NC_007435.1|WP_004529495.1|1738542_1740375_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRAYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLIAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NC_007435.1|WP_004529497.1|1740829_1741279_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKGVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NC_007435.1|WP_004200705.1|1741737_1742391_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NC_007435.1|WP_004529498.1|1742460_1742895_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NC_007435.1|WP_011204702.1|1743300_1744428_-|porin
MNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF
>NC_007435.1|WP_004529500.1|1744507_1746313_-|fatty-acid--CoA-ligase
MHATDQHSALNAAPSAYVYPLLVGQLLTHARGADAGRQIVYRGDVRHSYAQFRERIGRLAGALAALGVGADATVAVMDWDSHRYLESYFAIPMMGATLFTVNVRLSPRQIAHTLRDARASVVVAHADFLPLLEQVRDALGDSTCVIVACDGGAMPATSLPLAGEYERLVAAADPDYPFADFDENARAVLFYTTGTTGDPKGVCYSHRQIVLHALATAAALGAARDGQRLHRDDVYMPITPMFHVMAWGMPYIAVMLGLKIVLPGRYRAHALLDLRQAERVTFSHCVPAVLQMLLDEARLRACELSGWKMIVGGSALPASLCRAARARRIDVFAGYGMSETGPVVALAQLRGTEGGVDVHADEDAGIDADVGAGIDVDTDVDADINANAGANASDSSVTTAAAHADDETAKRCAAGWPPPLVELRVVDAAMRDVPRDGRTPGEIVLRGPALALGYRGNPQASAALWAGGYLHTQDVAVMHGDGAIRIVDRIKDVIKTGGEWVSSLELEGLLNDIAGIRESAVVGVPDARWGERPAAVVVCERDAPLAAQDVRARLLEHVAANRISRYAVPECERIVFVDALPKTSVGKIDKKSLRRLVERID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

198992 : 266427

Leptospira_phage(100.0%)

integrase,transposase

attL 192356:192372|attR 256338:256354

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
192356:192372	attL	NA	NA	NA	NA
WP_004528426.1\|198992_200366_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_004528430.1\|202481_202832_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.3e-15	38.5
WP_096335734.1\|202807_203230_-\|transposase	transposase	NA	NA	NA	NA
WP_085962479.1\|203257_204369_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004528434.1\|204783_212037_-	toxin	NA	NA	NA	NA
WP_004528435.1\|212266_215125_-	RHS repeat protein	NA	NA	NA	NA
WP_004528436.1\|215180_219638_-	virulence protein	NA	NA	NA	NA
WP_004528437.1\|219725_222695_-	RHS repeat protein	NA	NA	NA	NA
WP_004532456.1\|222718_230272_-	hypothetical protein	NA	NA	NA	NA
WP_009972582.1\|232156_232612_+	transcriptional regulator	NA	NA	NA	NA
WP_079999963.1\|233388_233667_-	hypothetical protein	NA	NA	NA	NA
WP_144399933.1\|233825_234945_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-48	39.1
WP_079999965.1\|235900_236854_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004539190.1\|237217_237391_-	hypothetical protein	NA	NA	NA	NA
WP_004528446.1\|237454_237649_-	hypothetical protein	NA	NA	NA	NA
WP_123875343.1\|238465_238726_+	hypothetical protein	NA	NA	NA	NA
WP_009972538.1\|238890_239532_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_076867424.1\|239688_239775_+	hypothetical protein	NA	NA	NA	NA
WP_004528452.1\|240742_241171_-	hypothetical protein	NA	NA	NA	NA
WP_004528453.1\|241314_241950_-	hypothetical protein	NA	NA	NA	NA
WP_076849357.1\|242349_242604_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004528459.1\|244978_249565_+	insecticidal toxin complex	NA	NA	NA	NA
WP_004532472.1\|249800_257213_+	hypothetical protein	NA	NA	NA	NA
256338:256354	attR	NA	NA	NA	NA
WP_004532391.1\|257253_264630_+	toxin	NA	NA	NA	NA
WP_004539515.1\|264626_265709_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_004528465.1\|266073_266427_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

723167 : 751795

Agrobacterium_phage(33.33%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004528791.1\|723167_723629_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004528792.1\|723665_725408_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011326141.1\|725395_726418_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004528794.1\|726404_729533_+	AAA domain-containing protein	A0A223W0B1	Agrobacterium_phage	1.6e-78	29.5
WP_004528795.1\|729559_732583_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.1e-23	24.8
WP_004528796.1\|732608_735251_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004528797.1\|735268_736333_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004530576.1\|736329_737082_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004200966.1\|737110_737503_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004200965.1\|737512_738310_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004530577.1\|738342_739740_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004184888.1\|739736_740402_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004528801.1\|744915_746364_+	peptidase	NA	NA	NA	NA
WP_004528802.1\|746323_746569_-	hypothetical protein	NA	NA	NA	NA
WP_004551882.1\|746527_746821_+	hypothetical protein	NA	NA	NA	NA
WP_004528803.1\|746825_747458_+	GTP cyclohydrolase I	A0A0P0HSD2	Acinetobacter_phage	9.9e-20	30.6
WP_153260200.1\|748518_749373_-	hypothetical protein	NA	NA	NA	NA
WP_009934666.1\|749343_749646_+	hypothetical protein	NA	NA	NA	NA
WP_004551886.1\|750079_750523_-	hypothetical protein	NA	NA	NA	NA
WP_076849920.1\|750607_750895_-\|transposase	transposase	NA	NA	NA	NA
WP_079999973.1\|751162_751795_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1451482 : 1505217

Ralstonia_phage(22.22%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004529292.1\|1451482_1452211_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	8.4e-23	31.7
WP_004529293.1\|1452414_1452855_-	hypothetical protein	NA	NA	NA	NA
WP_096335736.1\|1453414_1454535_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.9e-47	38.3
WP_004529296.1\|1454565_1454940_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004529297.1\|1455158_1456919_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004529298.1\|1457361_1466787_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_004546318.1\|1466938_1467136_-	hypothetical protein	NA	NA	NA	NA
WP_004529300.1\|1467136_1467400_-	hypothetical protein	NA	NA	NA	NA
WP_011326319.1\|1467991_1472623_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_004529303.1\|1472636_1473905_-	hypothetical protein	NA	NA	NA	NA
WP_004529304.1\|1473920_1476125_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.4e-42	27.8
WP_009935223.1\|1476541_1476988_-	hypothetical protein	NA	NA	NA	NA
WP_004529308.1\|1478099_1478447_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.6e-41	73.8
WP_038724224.1\|1478443_1478851_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.4e-11	37.3
WP_004529310.1\|1479283_1481317_-	hypothetical protein	NA	NA	NA	NA
WP_004546333.1\|1481557_1483729_-	alpha-galactosidase	NA	NA	NA	NA
WP_004529312.1\|1483733_1484585_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004544732.1\|1484585_1485539_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004524827.1\|1485571_1486813_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|1486848_1488093_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_004529315.1\|1490545_1491604_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004552182.1\|1492997_1493783_+	hypothetical protein	NA	NA	NA	NA
WP_024431039.1\|1494514_1495774_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004529319.1\|1495733_1496444_-	hypothetical protein	NA	NA	NA	NA
WP_004203275.1\|1496459_1498664_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004529320.1\|1498660_1501327_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-78	30.7
WP_004529321.1\|1501305_1502784_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004529322.1\|1502780_1504652_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004196148.1\|1504656_1505217_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

2358771 : 2363590

Burkholderia_virus(88.89%)

integrase,transposase

attL 2347883:2347899|attR 2374386:2374402

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2347883:2347899	attL	NA	NA	NA	NA
WP_004525420.1\|2358771_2359056_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004547086.1\|2359039_2359261_-	BrnT family toxin	NA	NA	NA	NA
WP_004526640.1\|2359880_2360156_+	hypothetical protein	Q6JIH4	Burkholderia_virus	7.2e-44	100.0
WP_015967385.1\|2360165_2360297_+	hypothetical protein	Q8W6Q2	Burkholderia_virus	5.2e-16	100.0
WP_009946436.1\|2360298_2360406_+	hypothetical protein	Q6JIH6	Burkholderia_virus	1.3e-12	100.0
WP_009946438.1\|2360640_2360988_+	hypothetical protein	Q6JIH8	Burkholderia_virus	3.8e-58	100.0
WP_004552959.1\|2360984_2361239_-	hypothetical protein	Q8W6Q4	Burkholderia_virus	6.3e-42	97.6
WP_076866681.1\|2361428_2362127_-	hypothetical protein	Q6JII1	Burkholderia_virus	5.1e-110	99.5
WP_004537646.1\|2362268_2362418_+	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_011205400.1\|2362414_2363590_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	7.1e-213	98.9
2374386:2374402	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2515213 : 2586733

Vibrio_phage(25.0%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|2515213_2515981_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|2516019_2517021_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|2517017_2517791_-	hypothetical protein	NA	NA	NA	NA
WP_004530033.1\|2517787_2518471_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|2518835_2520350_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004530037.1\|2522070_2523009_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|2523042_2523591_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|2523587_2525099_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|2525242_2525770_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|2525849_2526281_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|2526294_2528157_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|2528153_2529143_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004530040.1\|2529145_2532016_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004525548.1\|2532006_2534298_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|2534463_2536752_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004530041.1\|2536755_2538972_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|2538971_2540042_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004525551.1\|2540044_2540761_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|2540803_2541193_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004530042.1\|2541198_2541792_+	lipoprotein	NA	NA	NA	NA
WP_004525552.1\|2541788_2543150_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530043.1\|2543175_2544891_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|2544887_2548391_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|2548449_2548809_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|2548831_2549257_+	hypothetical protein	NA	NA	NA	NA
WP_004530045.1\|2549481_2549853_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|2549950_2550124_-	hypothetical protein	NA	NA	NA	NA
WP_004528661.1\|2550403_2551303_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_076857594.1\|2551400_2551529_+	hypothetical protein	NA	NA	NA	NA
WP_004528659.1\|2551536_2552856_+	glycosyltransferase	NA	NA	NA	NA
WP_004528658.1\|2552852_2554439_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004186828.1\|2554679_2555675_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_038724161.1\|2555800_2555983_+	hypothetical protein	NA	NA	NA	NA
WP_011326587.1\|2555979_2557563_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004547675.1\|2558043_2559297_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004530050.1\|2559810_2561475_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	4.1e-57	31.6
WP_004530051.1\|2561607_2563173_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_004530052.1\|2563361_2564378_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004530054.1\|2564887_2566087_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|2566264_2567290_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009923708.1\|2567448_2567712_+	hypothetical protein	NA	NA	NA	NA
WP_004523136.1\|2567723_2568998_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004186989.1\|2569070_2570042_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|2570192_2570726_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|2570786_2572850_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|2572852_2574778_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004202150.1\|2574782_2575955_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|2575951_2576737_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|2576761_2578030_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|2578050_2579196_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004523141.1\|2579305_2580169_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|2580349_2582005_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|2582091_2582967_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004523143.1\|2583110_2584010_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186939.1\|2584145_2585699_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004535106.1\|2585734_2586733_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_007434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007434_1

1288774-1288967

Orphan

Consensus_repeat	Method
CTTCGATGCCTTCGGTGCCTTCGGTGCCTTCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_007434_1

>merge|NC_007434|1|1288774-1288967|CRISPRCasFinder
CTTCGGTGGCTTCGACGGCTTCGGTGGCTTCGATGCCTTCGGCGGCTTCGATGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCGACAATCTCACCGTCTTCGAAGTTTTCGCAGCCTCCGTCGCCTTCCTTTCCTTTG

>NC_007434|1|1|1288774-1288967|CRISPRCasFinder
CTTCGGTGGCTTCGACGGCTTCGGTGGCTTCG	ATGCCTTCGGCGGCTTCGATGC
CTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCG	GTGCCTTCGGTGCCTTCGGTGC
CTTCGGTGCCTTCGGTGCCTTCGGTGCCTTCG	ACAATCTCACCGTCTTCGAAGT
TTTCGCAGCCTCCGTCGCCTTCCTTTCCTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007434.1\|WP_004526330.1\|1276594_1279579_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_007434.1\|WP_004526329.1\|1275456_1276212_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_007434.1\|WP_004553878.1\|1298720_1299497_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NC_007434.1\|WP_004526333.1\|1282878_1284069_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|273126
NC_007434.1\|WP_004526331.1\|1279691_1279871_+\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_011325270.1\|1299891_1300590_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NC_007434.1\|WP_004526332.1\|1280894_1282874_+\|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX	unknown	unknown	gnl\|CDD\|235899
NC_007434.1\|WP_004534273.1\|1294325_1295426_-\|porin	unknown	unknown	gnl\|CDD\|238208
NC_007434.1\|WP_009952712.1\|1289702_1290317_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|185053
NC_007434.1\|WP_004522525.1\|1297820_1298510_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185089
NC_007434.1\|WP_004526336.1\|1286428_1287868_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143427
NC_007434.1\|WP_004522531.1\|1288028_1288556_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NC_007434.1\|WP_004538480.1\|1290468_1291647_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NC_007434.1\|WP_004526341.1\|1291767_1293468_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_007434.1\|WP_004526342.1\|1296308_1297076_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226961
NC_007434.1\|WP_004526335.1\|1284237_1285545_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_007434.1\|WP_004193161.1\|1297110_1297824_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185029
NC_007434.1\|WP_004193987.1\|1293528_1293867_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NC_007434.1\|WP_004193185.1\|1279905_1280895_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_007434.1\|WP_004522532.1\|1285583_1286342_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975

Protein	Function_ID	Function_description	E-value
NC_007434.1\|WP_004526330.1\|1276594_1279579_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_007434.1\|WP_004526329.1\|1275456_1276212_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.36785e-27
NC_007434.1\|WP_004553878.1\|1298720_1299497_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.1024e-129
NC_007434.1\|WP_004526333.1\|1282878_1284069_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|273126	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein. Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General].	4.7326e-120
NC_007434.1\|WP_004526342.1\|1296308_1297076_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	1.43115e-161
NC_007434.1\|WP_011325270.1\|1299891_1300590_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	5.01337e-78
NC_007434.1\|WP_004526332.1\|1280894_1282874_+\|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX	gnl\|CDD\|235899	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed.	0
NC_007434.1\|WP_004534273.1\|1294325_1295426_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	1.93053e-65
NC_007434.1\|WP_009952712.1\|1289702_1290317_+\|beta-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	1.24502e-11
NC_007434.1\|WP_004522525.1\|1297820_1298510_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185089	PRK15135, PRK15135, histidine ABC transporter permease HisQ.	4.18901e-109
NC_007434.1\|WP_004526336.1\|1286428_1287868_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143427	cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.	0
NC_007434.1\|WP_004522531.1\|1288028_1288556_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.23775e-114
NC_007434.1\|WP_004538480.1\|1290468_1291647_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NC_007434.1\|WP_004526341.1\|1291767_1293468_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_007434.1\|WP_004526335.1\|1284237_1285545_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66568e-100
NC_007434.1\|WP_004193161.1\|1297110_1297824_-\|ABC-transporter-permease	gnl\|CDD\|185029	PRK15069, PRK15069, histidine ABC transporter permease HisM.	1.45713e-163
NC_007434.1\|WP_004193987.1\|1293528_1293867_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	1.39283e-55
NC_007434.1\|WP_004193185.1\|1279905_1280895_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.39289e-158
NC_007434.1\|WP_004522532.1\|1285583_1286342_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	5.14693e-137

>NC_007434.1|WP_004522531.1|1288028_1288556_+|inorganic-diphosphatase
MSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANFKK
>NC_007434.1|WP_004526336.1|1286428_1287868_-|aldehyde-dehydrogenase-family-protein
MEEAKHFIAGAWAPPAGGETIAVIDPSDGEPFARLARGTAPDVGAAVQAARAAFDGPWGALGAADRGRMLYRLSMLVAACREELALIESRDTGKPLTQARADADALARYLEFYAGAADKLHGETLPYRDGYTVLTLREPHGVTGHIVPWNYPMQILGRSVGAALAAGNACVVKPSEDACLSILRVATLAAEAGLPEGAFNVVTGYGHEAGAALARHPGVDHLSFTGSPDTGRLVAQMAAEHHASVTLELGGKSPQIVFADADLDAALPVLVSAIVQNAGQTCSAGSRVLIDKAVYEPLVERLATAFNGLKVGPGRADLDCGPLINAKQQQRVWDFLSDAQHDGIAMAAHGQVVPDAPETGFYQAPALLRDVPHTHRLAQEEVFGPVLAAMPFADEDEALALANGTPFGLVAGIWTRDGARQMRLARKVRAGQVFVNNYGAGGGVELPFGGTGRSGYGREKGFEALYGFTVLKTIALRHG
>NC_007434.1|WP_004522532.1|1285583_1286342_-|SDR-family-oxidoreductase
MRLSGKTAVVTGAGSGFGEGIAKTFAREGACVVVNDLHAAAAERVASEIALAGGRALAVAGDVSRGEDWQALRDAALAAFGSVQVVVNNAGTTHRNKPVLDITEAEYDRVYAINMKSLFWSVQTFVPYFRGAGGGAFVNIASTAAVRPRPGLVWYNSTKGAMLTASKTLAAELGADRIRVNCVNPVLGETGLTSEFMGVPDTPENRARFVATIPLGRLSTPQDVANAALYLASDEAAFVTGACLEVDGGRCV
>NC_007434.1|WP_004526335.1|1284237_1285545_-|MFS-transporter
MASTLPATTPDAPSAFEAATYRKVSWRLAPLLLLCYVVAYLDRVNVGFAKLQMAADLHLSDAVYGLGAGIFFVGYFLFEVPSNVILHKVGARVWIARIMVTWGIISALTMFVSTPAMFYTMRFLLGVAEAGFFPGVILYLTYWYPAHRRGRMTTLFMTAVALSGVVGGPISGYILKTFDGMNGWRGWQWLFLLEGVPSVLVGILLLFALDDGIAKAKWLDGDEKALLSRNVAAEEARKEDLPLSAVFASPRVWLMGFIYFSFVMGLYGVGFWLPTIIKSTGVTDAFAIGLLSAVPYAAAVVAMLAVARSADRRRERRWHLAIPAAAGALGLVLSVVWAHDTLLAMLGLTIATMGILTTLPLFWSLPTAFLGGTAAAAGIAIINSVGNLAGFLSPYLVGWLKQASASNAAGMYMLAGFLVLGGLLALTVPKSLVDI
>NC_007434.1|WP_004526333.1|1282878_1284069_+|heme-biosynthesis-protein-HemY
MTLRGIIWLAVLFAIAAALATVGRFDTGQVLIVYPPYRIDVSLNFFVLAIIVAFIVLYALMRIVRNVWRMPQRVAAYRARMRNERAQAALRDALANLYAGRFSRAEKAARDALAVDANQSAASLVAAAATHRMHEYARRDEWLAKVSGQEWQDARLLATADMRADGRDAEGALAALAEMQASGGKRIHAQQIALRAQQQNKNWAEVLKIAKALEKREALHPAAAVRLRQQAAEHLLRDRRHDADALLEVWQSLSAAERQSPRLADLAAELLIALERRQEARRIVEDALAHNWNARLLRRYPDTAGADALPLIQKAEGWRRERPDDADLLFALGRLCQQQQLWGKAQSFLESALKLADDEPLRIRAHRALARLFEHLGETDKAAQHYRESALAITVV
>NC_007434.1|WP_004526332.1|1280894_1282874_+|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX
MAGAPRTFTAVLTRPDGQSAALAAQLAAAGIDVLDFPLIDIAPLADDAPLAEAFARLDAYALVVFVSPNAVDHALARLGAIWPHPLPIGVVGPGSVAALARHGIAAPAHRVIAPSAPDDGGEPHYDSESLFAEIARAFDGEAKLAGKRVLIVRGDGGREWLAERLREAGAEVELVAAYRRVSPEPSIGAWERVHALLSGAPHAWLVTSSEGVRNLQELAHEHLNETEIDALKHARFVAPHSRIVETARALGFDRITLTGAGDERIVRAFRTLADQADQPATAAPMPSRMTDTNDTKDVSSKPAAAPVAPPNQPFTPFETKERRGAASAALWFVVVVIAAAAGVGGYALNRKVDRLDQHATERQKALDAQTAELRTKTEQALASVRQADSQLSQLEGKLADAQTAQTALQQQYQDLSRNRDAWMIEEVGQMLSSASQQLLLTGNTQLALIALQNADARLASSQSAQAVVVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKVDTLPLAGEVLAPHAQAKPDAAASARQAAAAAGEPRWKAWWRGFSADIGEQLKSLVEVRRIDHADAMLASPEQGYFVRENVKLRLLSARLSLLARDDGAMKSDLHAAQAAVARYFDGASKDTRVVQDLLKQVDAASLTVAVPNLNTSLNAVQQFKSRG
>NC_007434.1|WP_004193185.1|1279905_1280895_+|hydroxymethylbilane-synthase
MNSETLPAELPATLTIASRESRLAMWQAEHVRDALRKLYPACDVKILGMTTRGDQILDRTLSKVGGKGLFVKELESALADGRADLAVHSLKDVPMALPEGFALAAVMSREDPRDAFVSNDYASLDALPAGAVVGTSSLRREAMLRARHPRLDVRPLRGNLDTRLAKLDRGDYAAIILAAAGLKRLGLAARIRALLDVDDSLPAAGQGALGIEIAARRADVAAWLAPLHDHASALAVEAERAVSRALGGSCEVPLAAHAVWRGGELHLTGSVSTTDGARVLAAHAHARAATAADALALGRRVSDALERQGARAIVDALVAASAQAQKGGA
>NC_007434.1|WP_004526331.1|1279691_1279871_+|hypothetical-protein
MKPDDAANDAAGDAAANRTRWRMPDAFSNRTAVRDLDADRTGRSRSPPGGRAGKVRVLP
>NC_007434.1|WP_004526330.1|1276594_1279579_-|phosphoenolpyruvate-carboxylase
MKSSGSARATRRNAVSSSSAPAHAEPPARRAAKPARKLDGAAARPLAPTNAASAKPQGRTREDKDRPLFEDIRYLGRLLGDVVREQEGDAVFDVVETIRQTAVKFRREDDKAAAQTLEKMLRKLTPEQTVSVVRAFSYFSHLANIAEDRHHNRRRRIHALAGSAAQAGTVAYALDKLKQAGDASSKTIKQFFEGALIVPVLTAHPTEVQRKSILDAQHDIARLLAERDQPLTARELAHNEALLRARVTTLWQTRMLRDARLTVADEIENALSYYRATFLDELPALYADIEEALAEHGLRARVPAFFQMGSWIGGDRDGNPNVTAATLDEAISRQAAVIFEHYLEQVHKLGAELSVSNLLVGASDALKALAAASPDQSPHRVDEPYRRALIGVYTRLAASARVRLGEGTVPVRSAGRGAAPVRATPYADAEEFAADLRVLTDSLALHHGESLATPRLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGLFEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLAHQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEVIASKFANPEIGRRNLETVVAATLEATLAPHSNAPKQLPAFEATMQTLSDAAMASYRALVYETPGFTDYFFSSTPITEIAELNIGSRPASRKLQDPKNRKIEDLRAIPWGFSWGQCRLLLTGWYGFGSAVAAYLDGAPDAAERGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQLVADKKLRKHVFERIVAEWHRTADALAEITGAHARLAANPLLARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG
>NC_007434.1|WP_004526329.1|1275456_1276212_+|class-I-SAM-dependent-methyltransferase
MKHHDRVADAFGTTASAYLTSAVHATGADLDTFAAEIGATPGARVLDLGCGAGHASFAAARGGAHEVIAYDLAPQMLATVEAAARERGLSNVRIEQGAAERLPFADASFDWIVSRMSAHHWHDVPRALAEARRVLKPGGRVLFVDVAGADHPLVDTHLQAVEVLRDASHVRDYRVDEWLAFFAQAGFAARVRERWRLSIGFDGWVARMRTPDVRAHAIRALWADAPDEVRAYFDVQPDGSFKLDVVMIDAR
>NC_007434.1|WP_009952712.1|1289702_1290317_+|beta-glucosidase
MERQRLVMQPPAQRPARDREAFAGDANPSGKLPITFARKAADLPQPAIDPASLRTVYGEGLMIGYRWYDATNVQPRLPFGFGLPYTTFVYSGMSVQADAAGNVMVGFTVTNTGARGRGSRAGLCGAARRARRAAAAARRPGEGRAAAGPGAARRRHDCGETLRDLGRGRARVAVECGSYRLSVAASSRDPNALSQPGSFNGARL
>NC_007434.1|WP_004538480.1|1290468_1291647_-|N-acetyltransferase
MKHERRDYRMGILTSVLDASAAEWDALVARAPRPTPFLKHAFLSALHRAGCATDGTGWTPRFVTLADSATDALVAAAPVYAKRHSYGEYVFDWAWADAYQRNGLPYYPKLLCAVPFTPVQGSRLLAVDDDARRRLAATLVALAEQSDVSSLHVLFPTGDEARALADMGMMLREGVQFHWLNDGYRDFDAFLGTLEQKKRKNIRAERRKVADAGVTLRRVRGEDATDADWRFFARCYRQTYREHFSSPYLNLEFFREIGATMPENLLLVIAERDGRPIASALAVYQRGEAGGGTLYGRYWGALEHVPCLHFETAYYQLLEFCIEERLDTFEGGAQGEHKLARGFMPTVTHSAHWLAHPAFADAVGHFLAQETNQIHAYVDELREHNPFRAGER
>NC_007434.1|WP_004526341.1|1291767_1293468_+|NAD+-synthase
MKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHLLIAPELALSGYPPEDLLLRPAFYAASDAALAALAAQLKPLAGLAVLVGHPLRAAGAGASSADGNANRPIERGAAPVDTYNAASLIVGGEVVGTYRKQDLPNTEVFDEKRYFATDAAPYVFELNGVRFGVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMHKEAVRIDILRARIRETGLPMVYVNLVGGQDELVFDGGSFVLDGAGELVAKMPQFEEGHAIVEFDGARALPAPIAPALPVEAQVYRALVLGVRDYIGKNGFPGAIVGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTADISTTDAADMAKRVGVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNKSEMAVGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGALDVIPERILTRAPSAELRENQTDQDSLPPYDVLDAIMRMYMEEDRPLAEIVAAGYAEADVKRVTRLIKINEYKRRQAPVGIRVTHRAFGRDWRYPITSRFIESID
>NC_007434.1|WP_004193987.1|1293528_1293867_+|P-II-family-nitrogen-regulator
MKRITAIIKPFKLDEVREALAEVGLTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKMKIEVVVANNLVDQVIDAVIGAARTGKIGDGKIFVSDVERVIRIRTGEENEAAV
>NC_007434.1|WP_004534273.1|1294325_1295426_-|porin
MEEMMKKVMLAAVLATAGVAAHAQSSVTLYGRLDAGIEYMNGLPSANGGSTSRWRAESGNWGTSLWGLKGSEDIGGGNKIVFQLEGSFDTMNGNGPGAGSIWNRWATIGISNDTYGTLLLGRELAIANGVWDFDPFGQSSWSTASLVRGRNWNKTSNNISYQSPKFYGFDVYGQYALSNATNWNGNGSTSQGRSAGLQLTYTTSLFQIRGLYDEARDPANGKLDDVFNYSREYFAGVNVFLGQFKLQAAYQASHADGGPVVNNGITTTQQVWGGVTWQATPAAALIAAVYHVNANHGGGNANIFTVGGSYNLSKRTLLDVQVATVRNSKTANFGLNANPAGTDISTGNPKFGGSQTGVYAGIQHLF
>NC_007434.1|WP_004526342.1|1296308_1297076_-|ABC-transporter-ATP-binding-protein
MHKLFVDDLHKRYGNNEVLKGVSLRANAGDVISVIGSSGSGKSTMLRCINFLEQPNAGRIFVDGEEVRTAQDRTGALKAADSKQLRRVRTKLAMVFQHFNLWAHMNVLENVMEAPVHVLGITKREAQERAREYLEKVGLAPRVETQYPSHLSGGQQQRVAIARALAMHPDVMLFDEPTSALDPELVGEVLKVMQKLAEEGRTMIVVTHEMGFARNVSNHVMFLHQGRVEEEGAPADVFGATKSERLKQFLSGSLK
>NC_007434.1|WP_004193161.1|1297110_1297824_-|ABC-transporter-permease
MIELIQEYWRNYLYTDGYRFTGLAITMWLLVVSIGIGFCLSVPLAVARVSKKKWLAGAVWLYTYVFRGTPLYVQLLLCYTGLYSLQAVRGTPMLDAFFRDGMNCTLLAFTLNTCAYTTEIFAGAIKATSYGEIEAARAYGMSTFTLYRRIVLPSALRRALPLYSNEVILMLHATTVAFTATVPDILKIARDVNSATYMSFHAFGIAALLYLAISFTLVWLFRRAERRWLAYLRPQGK
>NC_007434.1|WP_004522525.1|1297820_1298510_-|ABC-transporter-permease-subunit
MFLQGYGPLILSGTWQTVKLAVLSLALSFLLGLVGAAAKLSRNRVSNGIGTLYTTLIRGVPDLVLMLLLFYSLQIWLNQLTDLMNWDQIDIDPFAAGVLVLGFIYGAYFTETFRGAFLSVPRGQLEAGSAYGMTNWQVFARVMFPQMMRFALPGIGNNWQVLVKSTALVSIIGLADVVKASQDAGKGTLRFFFFTLLAGAIYLAITTISNFVLMWLEKRYSTGVRKADL
>NC_007434.1|WP_004553878.1|1298720_1299497_-|ABC-transporter-substrate-binding-protein
MKKLALCAALALAAGGAFAKEWKTVRIGVDASYPPFESTAPSGEIVGFDVDLAKEVCKRINAKCTWTPQDLDGIIPALKAKKFDVIVSSLTVTDKRREQIDFSDKLYDAPARMIAKAGSPLAPSVESLKGKRVGVEQGSTQETFAKAHWEPKGVTIVSYQNQDQVYADLGSGRLDATLQDELQADYGFLRTPRGKGFAWAGPAVKDPRTLGDGTAMGLRKEDADLKEAINRALASMHKDGTYDRLSRKYFPYSVYSAK
>NC_007434.1|WP_011325270.1|1299891_1300590_+|pirin-family-protein
MFEIRRAGDRGHADHGWLDTHHSFSFADYRDPEHMYFGALRVLNDDRIAPTRGFGMHPHRDMEIVTYVLEGALAHRDSMGNGSIVRAGDVQRMSAGTGIVHSEYNASCDAPLHLLQIWLLPVEPGGRPGYQEARFTDADKRGRLRLVASPDGRDGAVTVRADASIYAGLVDGDERAEFAPPAGRRAYVHVARGCVVVNGEVLAAGDGARIAEVGRVVFERGERAEVLLFDLA

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Crispr_ID: NC_007434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007434_2

1612442-1612583

Orphan

Consensus_repeat	Method
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007434_2

>merge|NC_007434|2|1612442-1612583|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGGACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGCCGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

>NC_007434|2|2|1612442-1612583|CRISPRCasFinder
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCGGCGG	ACGAATGCCGTTCGCAAGTTCGCAGCGGTTCGCGCTGGAACGGCGTCTGC
CGCGTATGCGGCGAACGCCGGCGCGACAAGCGTTGCAGCGCTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007434.1\|WP_004526507.1\|1595425_1596790_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NC_007434.1\|WP_004191983.1\|1614008_1614233_-\|lipoprotein	unknown	unknown	unknown
NC_007434.1\|WP_004526515.1\|1610568_1611780_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_007434.1\|WP_122634641.1\|1612113_1612254_+\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_004526508.1\|1596974_1599251_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372320
NC_007434.1\|WP_004526510.1\|1599875_1603220_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NC_007434.1\|WP_004193167.1\|1595094_1595274_+\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_004192878.1\|1596786_1596978_-\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_004526511.1\|1603216_1607029_+\|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl\|CDD\|236784
NC_007434.1\|WP_004526519.1\|1612805_1613738_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_007434.1\|WP_004526522.1\|1617967_1618792_+\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NC_007434.1\|WP_004526513.1\|1609718_1610123_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_007434.1\|WP_004526520.1\|1617123_1617483_-\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_004193128.1\|1614484_1614697_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NC_007434.1\|WP_004526521.1\|1617501_1617807_+\|pentapeptide-MXKDX-repeat-protein	unknown	unknown	gnl\|CDD\|131998
NC_007434.1\|WP_004521865.1\|1614920_1616852_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_007434.1\|WP_011204214.1\|1620968_1621178_-\|hypothetical-protein	unknown	unknown	unknown
NC_007434.1\|WP_004526512.1\|1607025_1609722_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236783
NC_007434.1\|WP_004526525.1\|1619970_1620762_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NC_007434.1\|WP_004550677.1\|1618833_1619955_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602

Protein	Function_ID	Function_description	E-value
NC_007434.1\|WP_004526507.1\|1595425_1596790_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NC_007434.1\|WP_004550677.1\|1618833_1619955_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	3.62745e-55
NC_007434.1\|WP_004526515.1\|1610568_1611780_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.70573e-53
NC_007434.1\|WP_004526508.1\|1596974_1599251_-\|hypothetical-protein	gnl\|CDD\|372320	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This family has similarities to the fusaric acid resistance protein family. The proteins are lodged in the inner membrane.	4.96949e-82
NC_007434.1\|WP_004526510.1\|1599875_1603220_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	0
NC_007434.1\|WP_004526511.1\|1603216_1607029_+\|exodeoxyribonuclease-V-subunit-beta	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NC_007434.1\|WP_004193128.1\|1614484_1614697_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	5.81885e-06
NC_007434.1\|WP_004521865.1\|1614920_1616852_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_007434.1\|WP_004526519.1\|1612805_1613738_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	4.04996e-12
NC_007434.1\|WP_004526522.1\|1617967_1618792_+\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	2.79293e-68
NC_007434.1\|WP_004526513.1\|1609718_1610123_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	8.08096e-65
NC_007434.1\|WP_004526521.1\|1617501_1617807_+\|pentapeptide-MXKDX-repeat-protein	gnl\|CDD\|131998	TIGR02953, conserved_hypothetical_protein, pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.	0.0017555
NC_007434.1\|WP_004526512.1\|1607025_1609722_+\|AAA-family-ATPase	gnl\|CDD\|236783	PRK10875, recD, exodeoxyribonuclease V subunit alpha.	1.76834e-72
NC_007434.1\|WP_004526525.1\|1619970_1620762_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	1.21624e-90

>NC_007434.1|WP_122634641.1|1612113_1612254_+|hypothetical-protein
MGRDARRRVRAGRPRILKRGTLPVFCDAGLAASIGAMPTHQSVQIV
>NC_007434.1|WP_004526515.1|1610568_1611780_-|EAL-domain-containing-protein
MRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDADVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKERRGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVAIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDFSSYGDGR
>NC_007434.1|WP_004526513.1|1609718_1610123_+|aminoacyl-tRNA-hydrolase
MTLRYAFSPDEVELTAVRAQGAGGQNVNKVSSAIHLRFDIRASSLPDDVKARFFARADQRITREGVIVIKAQEYRTQEKNRAAALARLDTLIRSAGVTPRKRVATRPTRASKERRLAEKGRRSEVKSGRGRVVE
>NC_007434.1|WP_004526512.1|1607025_1609722_+|AAA-family-ATPase
MSVVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRVGASAAAARWAARAAFAASRATAAGHVCVALRALAQRYDEPYDDVRAALAASGVTAFDGIVRGGECPLVVDRDGRLYLARYFEYETRLANALVERSRCGGAPAGGADALSPDALGERLVRYFGPQKERGVDWQRVAALIALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPELRIALAAPTGKAAQRMQEALHARAGSLPAELAARLPRTSCTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAVEAGAVFAELSARPAFSPATCATIARALGVGEAEFVAALPDGFVVQAVGAERVADARAAAADMDVAARGTAGAAAAAARATAAAAARMTTAAAAARGGAPESAAQRAPAPHAGRRGGGRASNRTVDDAQGSLFAFDDDAFGVGTSGGEPGAGAQGAGRRDGGAPSLDEPHAGRRDGGASPGVAHSRRDAFDARARSGPADVSDLENAARAYAPAGAAGPADSPADASFVEPAAWIEADELAWLDNAVFSFSEGASANAEADGRRSAAATATDAGARTAPPVAREATAPTPRETARSDGSAVAPLTDCVVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTQDDAAARFSDDGGATLSAATVEQLARGFAGYAAALRDALATPEPDALPLFDVLNRFRVLCATRTGARGAEEVNARMAAEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGRARAVSPAALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARARVQVIGSRAVLALAIATRTARDSGLAARIADALRARQEGAR
>NC_007434.1|WP_004526511.1|1603216_1607029_+|exodeoxyribonuclease-V-subunit-beta
MSHVAPSGPSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALDTGDGGGDPFIARLFETTLAPGRGLDPQTAAKRVRRALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPVAAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAARAHFDTAAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLTQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRKRTRRVVSFDDLLANLYRALDAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIFAPAGPLFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVRAGSRVRAPLVDATDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAAHACAAEIARLMRGAREHAVTLGGEPLAASGIAVLVQTHRQGSLVKRVLAAWGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAAGGASGNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRREGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGCDDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAGDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHRYLRVRMHGYDYDAHIAGYLYVFVRGVRPDWRNGGASAGVHARRPARALIEALDALMREGDA
>NC_007434.1|WP_004526510.1|1599875_1603220_+|exodeoxyribonuclease-V-subunit-gamma
MLHLFYSNRHETLADALLDDLAFASDGAGPWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLAQWLWAQIGEVLTVPAHSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTYRPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLREARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVTAARAESLDAADRLDYQEVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYADNPAPTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAPSDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPERDVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARRGLAPDAAEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTDDLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAGAALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDELLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLLAEGACAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVDTEPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASPEVPGGATGAVRRDHALDALAQLAGNVRRALADGATRVPFAFDVAPAWPAAGDARWFGEHDAALAAAATREPLRLHGALARLTAAGQVIYRYARPGARDYLAAWLAHLVYCAIDPGGPRRTLWFGSGDTFEFAPVAAPLEQLAPLAALFRAGRRMPLAFFPRSAWALVSESESKAAGVWINDRVAGEADDASLALAWRGANPSLDEPFGALAHLVFDPLVEHLRRAS
>NC_007434.1|WP_004526508.1|1596974_1599251_-|hypothetical-protein
MRYSVEIRKFFYSQYFFGGLRIALGVSLPAVLSLAVLHDRELGFTIATGALGACVVDMPGPLKYKHNEMLACSVIGFFSALATGLATPNIFALWLTIVPLTFALSLIVVYGNRWPQISFATLFMMVMTLEEKFTPLQALVNASWILAGGLWYTYWATIVSRWQARRIEQQALAESLFACASYLLARADFYDLDADLDECYRNLVARQITAVETQETARDIVLRNLPKLRRGKLDPGRTMMFNLFINSVDLHEMFVGAHTDYPLVRSTFGGSDLMIFYRDLIRKAAADLEEIGFAVLENRLPHSRISVKAELRAIEYEIELMRKKQFAATHPEAYAAVLATFRRIWSATRLIDKMRRNLSGSADAQRTELKIDKALTRFLQKRRMSPLLIFSNLNMGSPSLRHALRVTIAVAVGFWLGRLLPLTNAYWIVMTSIIILKPGYSLTKQRNAQRIVGTLIGCAASLALIYTVHEPHVLIAIMFGSMVMSYSLLLFNYAASVVFTSSYVLLLFHLLAPGNMRIIGERAIDTVVGCMIAIAASRLFPYWEYRAIGKLVADALATTRKYFEATWRAGRGKAAPAVPAADGAAAVPAVAAVVDAVAPGLDGDYQYRLARKNVHIAFANLGQAFQRMMLEPKAHQKFVPELNDLLVQTHVLGAQITAAAPLLRHACEQGNPPALERGMAAVREHLEQAEAGVPPPANQAETSKQLTRELDSMVVDAERSDAGADLTHDLKVLAHQCKQMLASSLLIRKDASVIRLPE
>NC_007434.1|WP_004192878.1|1596786_1596978_-|hypothetical-protein
MSRPPPPFLSTVSRRARTQGFPDYCPRASIGMIYPAPSCLYNFSSASAGPHRPADDTNHSETR
>NC_007434.1|WP_004526507.1|1595425_1596790_-|amino-acid-permease
MKNLQRHLSARHIRFLALGSAIGTGLFYGSASAIRLAGPAVILAYIVGGAAVYMVMRALGEMAVREPVPGSFGHYATENLGPFAGFVTGWTYTLEMVIVAIADITAFGIYMGFWFPHVPQWIWVLAIVAIICGLNLCHVKVFGELEFWLSIVKVGAIVAMIGGGAAILFTGMRLGSGGAPSLANLWSHGGFLPNGVGGLVASLSVVIFAYGGIEVIGMSAGEAKEPERAIPRAINAVPMRILLFYVLTMIVLMSIFPWTGVGANGSPFVQIFSALGVRSAAEILNLVVISAAISAINSDIFGAGRMMYAMALQGQAPRALAAMSARGVPWVTVLVMAGALLVGVVLNYLMPKDVFLMVAASATFATVWVWLMILLSQVAMRRRLGAAEVAALKFKVPFWPVGPALTIAFMAFVIAMLGYFDDTRVALFVGAAWLAILALVFYTRIRPRLAAVAR
>NC_007434.1|WP_004193167.1|1595094_1595274_+|hypothetical-protein
MNDPRSKKNPVFGVAILIVVVIALVIGTILYNAISQKHEYDEAHPHAASAASAASAQHG
>NC_007434.1|WP_004526519.1|1612805_1613738_-|DMT-family-transporter
MNLKNALLLIVLAALWGASFLFIRVGVAEFGVAPLMALRVGIGALFLVALMLTRYAPRELIALLRQHARPLFVVGLLNSAAPFCLFAFAELTLSAGVTSVINATTPLWGALVAYLWLKDSLSLPRALGLVIGFAGVLTLVWDQVFSPHGANPASPATAALAAAAALGATLLYGIAANFTKRKLTGVDPLVSATGSMVGATILLLPFALATWPAAPVSAHAWGSVLALGIACTGVAYFIFFHLIAHIGPARAITVTFVIPVFGILWGALFLGERVSFAMLEGCVIVLLGTALATGAIRRIPGVRPQRNETA
>NC_007434.1|WP_004191983.1|1614008_1614233_-|lipoprotein
MNKTLVAAALASVALAGCYYPYGYYPASGYYAAPVQTAPVYVAPAYPAYYYPAPSLSLNFGYWSGGGRGYWRHH
>NC_007434.1|WP_004193128.1|1614484_1614697_-|glycine-zipper-2TM-domain-containing-protein
MKSIRRIGVCAMLIATMASLSACDTMTTRQRNAAIGAGIGGVAGAAIGGNALSTIGGAAAGGLVGSQVGK
>NC_007434.1|WP_004521865.1|1614920_1616852_-|phosphomethylpyrimidine-synthase-ThiC
MNANPKFLSADARVDAAAVAPLPNSRKVYVTGSQPDIRVPMREITQADTPTSFGGEKNPPIYVYDTSGPYTDPDAKIDIRAGLPALRQRWIDARGDTETLAGLTSDYGRERAADPATAELRFPGLHRHPRRAKAGKNVTQMHYARQGIITPEMEYIAIRENQRRAEYLESLKASGPNGAKLAAMMGRQHAGQAFGAAAFGANAPAEITPEFVRDEVARGRAIIPANINHPETEPMIIGRNFLVKINANIGNSAVTSSIGEEVDKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTANRMTGIVSRGGSIMAKWCLAHHKESFLYEHFEEICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELKTLGELTQIAWKHDVQVMIEGPGHVPMQLIKENMDLQLDWCKEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNKDDVKEGIITYKLAAHAADLAKGHPGAQVRDNALSKARFEFRWQDQFNLGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQDVREFAAQQGVSENDALKKGMEVKAVEFVKSGSEIYHRQ
>NC_007434.1|WP_004526520.1|1617123_1617483_-|hypothetical-protein
MIEEPNSRDAKADMTPARKNFSGPALAPPDNDRASARARKQTRASKPRAHADARPAHDRRAIDASSAHGPATPMRGATVPARAARTRLRGANPVRAASRRRGAISATDRGRARNRSVPC
>NC_007434.1|WP_004526521.1|1617501_1617807_+|pentapeptide-MXKDX-repeat-protein
MKRNLIAFASVAGFALAAPFAHAQNDAMSKDGMGMSKDAMSKGAMSGDAMSKDAMSKDAMSKDRMGKRHDHMAKGGMKAGPMSKDAMKEPMSSDKMSPMSN
>NC_007434.1|WP_004526522.1|1617967_1618792_+|DUF1223-domain-containing-protein
MSTDMSISFSVSLRAVAAALSLAAAGAAQAAADGACMARSPDGRQALVELYTSEGCSSCPPADDWLARLAARRAALRVVPLALHVDYWDGLGWADRFAQHRFTERQHALAARGGGRFVYTPEVAVDGRELRDWRDADAFGRRVVATAAEPARVGIALAAKRRAGALDVALSVTPRVGAPRALDAYLALYENGVESQVRAGENRGATLRHERVVRQWIGPLAATADAHASLDVRRALPLPANLRAADAARYGVVAFVEDPATGDVLQALDLPLCG
>NC_007434.1|WP_004550677.1|1618833_1619955_+|cytochrome-b/b6-domain-containing-protein
MSATPTTSASTTAMAGARASGAADAPARAPTGADVDAGATAWADATANATANATTDPTIDATADATTDAMANVTTDAATRVTANPPIHETANVPASTAAAATTEAVAGARAGAALDAAHPGATQTMSQTMSQTMSQTMAQTMAQTMTQTMTQAGTEAASPAGTDAAASGTCITRATRARRPIHPLWVRASHWLNALAAVTMALSGWRIYNASPIYAGFVFPRGATLGGWLGGALQWHFAAMWLLFFNGVFYLTMGVATRRFTRKLLPLSASGVARDLRDALRGRLSHDDLSVYNALQRAAYVAAIADLALLVLSGLVIWKSVQFPLLREWLGGYDRARVVHFWAMAFLVAFFVVHVAMAALVPRSLLAMLRGH
>NC_007434.1|WP_004526525.1|1619970_1620762_+|molybdopterin-dependent-oxidoreductase
MSENDRKKRENDIARIDRASLLIDVRKSLALPSRRLFGKRMLTLGGLAMLTGCTLRDDASVDDFLEKVSRANDRVQAWLFGPTRLAPTYAEADITRPFPFNAFYGIDEVPRVDADGFRLAVSGLVTGQRSWSLPALYALPHAEQITRHICVEGWSAIGRWGGTPFREFLRRVGADTSAKYVGFKCADDYYESIDMATALHPQTLLAFEYDGKRLPPEYGFPMKLRMPTKLGYKNPKHIVEIFVTNAYPGGYWVDQGYNWFGGS
>NC_007434.1|WP_011204214.1|1620968_1621178_-|hypothetical-protein
MKRRAVERRAMRPPASGAGKTGMTGDGGVRNDRSERAAANMTEGDERTRRRTRMMTCAAWRPHFVSIMH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	MF140416	Mycobacterium phage LastHope, complete genome	6359-6380	1	0.955
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	MT114163	Mycobacterium phage Settecandela, complete genome	64638-64659	1	0.955
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	MK937592	Mycobacterium phage Phrappuccino, complete genome	64638-64659	1	0.955
NC_007434_1	1.1\|1288806\|22\|NC_007434\|CRISPRCasFinder	1288806-1288827	22	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	379897-379918	2	0.909
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	NC_042031	Mycobacterium phage Anaya, complete sequence	7332-7353	2	0.909
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	NC_042031	Mycobacterium phage Anaya, complete sequence	7341-7362	2	0.909
NC_007434_1	1.2\|1288860\|22\|NC_007434\|CRISPRCasFinder	1288860-1288881	22	MF347636	Streptomyces phage NootNoot, complete genome	102732-102753	3	0.864

1. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to MF140416 (Mycobacterium phage LastHope, complete genome) position: , mismatch: 1, identity: 0.955

gtgccttcggtgccttcggtgc	CRISPR spacer
gtgccttcggtgccgtcggtgc	Protospacer
************** *******

2. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 1, identity: 0.955

gtgccttcggtgccttcggtgc	CRISPR spacer
gtgccttcggtgacttcggtgc	Protospacer
************ *********

3. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 1, identity: 0.955

gtgccttcggtgccttcggtgc	CRISPR spacer
gtgccttcggtgacttcggtgc	Protospacer
************ *********

4. spacer 1.1|1288806|22|NC_007434|CRISPRCasFinder matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 2, identity: 0.909

atgccttcggcggcttcgatgc	CRISPR spacer
ttgcctccggcggcttcgatgc	Protospacer
 *****.***************

5. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to NC_042031 (Mycobacterium phage Anaya, complete sequence) position: , mismatch: 2, identity: 0.909

gtgccttcggtgccttcggtgc	CRISPR spacer
gtgccttcggtgccttcggtcg	Protospacer
********************

6. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to NC_042031 (Mycobacterium phage Anaya, complete sequence) position: , mismatch: 2, identity: 0.909

gtgccttcggtgccttcggtgc	CRISPR spacer
ccgccttcggtgccttcggtgc	Protospacer
 .********************

7. spacer 1.2|1288860|22|NC_007434|CRISPRCasFinder matches to MF347636 (Streptomyces phage NootNoot, complete genome) position: , mismatch: 3, identity: 0.864

gtgccttcggtgccttcggtgc	CRISPR spacer
cgaccttcggtgccttcggtgc	Protospacer
  .*******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

116707 : 127932

Burkholderia_phage(22.22%)

integrase

attL 113912:113929|attR 130511:130528

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
113912:113929	attL	NA	NA	NA	NA
WP_011857935.1\|116707_117409_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	4.8e-07	30.4
WP_004525721.1\|118252_118501_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_004525722.1\|118657_119737_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_009932249.1\|119736_120189_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_038725828.1\|120446_120989_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	9.6e-48	56.4
WP_004525724.1\|121242_122160_-	hypothetical protein	A4PE40	Ralstonia_virus	5.2e-46	40.6
WP_009922658.1\|122159_122477_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_004525725.1\|122856_123600_-\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	9.4e-54	47.3
WP_004202928.1\|124625_125525_+	cytochrome c	NA	NA	NA	NA
WP_004524472.1\|125844_127932_-	AAA family ATPase	A7KV33	Bacillus_phage	1.9e-99	35.8
130511:130528	attR	NA	NA	NA	NA

DBSCAN-SWA_2

305336 : 366386

Leptospira_phage(11.76%)

tRNA,integrase,portal,transposase,protease

attL 305461:305478|attR 356321:356338

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100085585.1\|305336_306456_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.0e-48	39.1
305461:305478	attL	NA	NA	NA	NA
WP_004196276.1\|306715_309184_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	9.3e-114	34.4
WP_004196275.1\|309371_310475_-	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.7e-46	34.0
WP_076802033.1\|310637_312392_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_004198824.1\|312684_312819_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_004524583.1\|312892_313303_+	ribonuclease P protein component	NA	NA	NA	NA
WP_004198815.1\|313382_313652_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.1e-16	53.6
WP_004524584.1\|313660_315337_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_004545318.1\|315492_315954_-	transcriptional regulator	NA	NA	NA	NA
WP_004525820.1\|316249_317653_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_004525821.1\|317821_319051_+\|integrase	tyrosine-type recombinase/integrase	G9L697	Escherichia_phage	2.3e-65	36.5
WP_011325028.1\|319698_322566_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	6.6e-71	35.6
WP_004524588.1\|322690_323032_-	hypothetical protein	NA	NA	NA	NA
WP_004524589.1\|323028_323286_-	hypothetical protein	NA	NA	NA	NA
WP_004524590.1\|323278_323455_-	hypothetical protein	NA	NA	NA	NA
WP_004525823.1\|323822_324302_-	hypothetical protein	NA	NA	NA	NA
WP_004525824.1\|324301_324472_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_009928251.1\|325623_326541_-	hypothetical protein	NA	NA	NA	NA
WP_009935873.1\|326533_327535_-	hypothetical protein	NA	NA	NA	NA
WP_038802333.1\|327894_329015_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5
WP_004530509.1\|329313_330201_-	hypothetical protein	NA	NA	NA	NA
WP_004525828.1\|330568_331726_+	DUF4382 domain-containing protein	NA	NA	NA	NA
WP_004524601.1\|331788_331944_+	lipoprotein	NA	NA	NA	NA
WP_076849242.1\|332291_332603_+	hypothetical protein	NA	NA	NA	NA
WP_004524603.1\|332620_333181_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_011204742.1\|333670_334015_+	hypothetical protein	NA	NA	NA	NA
WP_004197759.1\|334230_334785_+	YaeQ family protein	NA	NA	NA	NA
WP_004197761.1\|334988_335405_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_004553740.1\|335806_336901_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	5.0e-19	36.9
WP_004553741.1\|336897_337839_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_076867470.1\|338009_339611_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_004525835.1\|339624_341073_-	RNA polymerase sigma factor RpoD/SigA	A0A2I7SAT0	Vibrio_phage	3.7e-30	33.5
WP_004525837.1\|341335_341884_-	hypothetical protein	NA	NA	NA	NA
WP_004525839.1\|342457_343027_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_004525840.1\|343129_344098_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011325037.1\|344240_345335_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004523110.1\|345363_346476_+	histone deacetylase	A0A2K9KZC4	Tupanvirus	3.2e-37	30.8
WP_004525842.1\|346486_347362_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	1.6e-73	47.3
WP_079999932.1\|347567_347786_+	hypothetical protein	NA	NA	NA	NA
WP_004525844.1\|348438_349452_+\|portal	phage portal protein	A4JWV0	Burkholderia_virus	1.5e-195	100.0
WP_004523107.1\|349525_349810_-	hypothetical protein	NA	NA	NA	NA
WP_004525845.1\|349806_350289_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_009918009.1\|350826_351081_-	hypothetical protein	NA	NA	NA	NA
WP_153260182.1\|351115_351832_-	hypothetical protein	NA	NA	NA	NA
WP_009941462.1\|352732_353176_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.9e-26	50.0
WP_004525848.1\|353296_353722_-	hypothetical protein	NA	NA	NA	NA
WP_004200732.1\|354310_354715_+	PaaI family thioesterase	NA	NA	NA	NA
WP_004189208.1\|354752_355622_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_004525849.1\|355742_356759_-	D-2-hydroxyacid dehydrogenase family protein	NA	NA	NA	NA
356321:356338	attR	NA	NA	NA	NA
WP_004189230.1\|357197_358253_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004525850.1\|358474_361084_-	DNA topoisomerase III	A0A2P1ELA0	Moumouvirus	7.7e-18	25.7
WP_004190199.1\|361294_361666_-	thioredoxin family protein	NA	NA	NA	NA
WP_004553745.1\|361725_362916_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.0e-21	39.2
WP_004525852.1\|363144_363648_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	2.1e-12	34.3
WP_004525853.1\|363679_364663_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-07	38.0
WP_004525854.1\|364783_365419_+	LysE family translocator	NA	NA	NA	NA
WP_004189409.1\|365528_366386_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

1158293 : 1169275

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004526281.1\|1158293_1160408_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004526282.1\|1160717_1161227_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.2e-13	42.2
WP_071810810.1\|1161418_1161637_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|1161899_1162478_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|1162745_1164005_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|1163977_1164160_-	hypothetical protein	NA	NA	NA	NA
WP_004526283.1\|1164172_1165798_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|1165927_1166131_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|1166663_1166978_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|1166974_1169275_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_4

1718306 : 1788821

Burkholderia_virus(61.11%)

integrase,portal,tail,terminase,capsid,head

attL 1750463:1750478|attR 1791163:1791178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038724015.1\|1718306_1719023_-	hypothetical protein	C7BGD6	Burkholderia_phage	9.7e-56	45.4
WP_004526584.1\|1719331_1722733_-	host specificity protein J	Q3HQU5	Burkholderia_phage	0.0e+00	56.7
WP_076802419.1\|1722729_1723305_-\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	3.1e-44	50.8
WP_004526585.1\|1723301_1724042_-	C40 family peptidase	A4JX14	Burkholderia_virus	7.9e-77	53.0
WP_079999939.1\|1724038_1724719_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	3.0e-62	52.7
WP_004526586.1\|1724709_1726125_-\|tail	tail fiber domain-containing protein	A4JX12	Burkholderia_virus	1.4e-202	73.9
WP_004526587.1\|1726128_1726473_-\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	1.2e-14	42.6
WP_004526588.1\|1726469_1729280_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	1.0e-23	23.0
WP_011325381.1\|1729276_1729717_-	hypothetical protein	NA	NA	NA	NA
WP_038724020.1\|1730047_1730383_-	hypothetical protein	NA	NA	NA	NA
WP_004526590.1\|1730531_1730969_-	hypothetical protein	NA	NA	NA	NA
WP_038724021.1\|1730968_1731325_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_079999956.1\|1731317_1731659_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	4.4e-06	33.3
WP_038724022.1\|1731688_1731979_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_004526591.1\|1731971_1733309_-\|portal	phage portal protein	A0A0R6PHI5	Moraxella_phage	3.7e-85	44.6
WP_154233168.1\|1733305_1733476_-	hypothetical protein	NA	NA	NA	NA
WP_004526592.1\|1733535_1734870_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	3.1e-79	41.2
WP_011325383.1\|1734879_1735473_-	peptidase U35	A0A0R6PGI7	Moraxella_phage	4.7e-32	47.1
WP_004526593.1\|1735492_1737082_-\|terminase	terminase large subunit	Q9MCV7	Escherichia_phage	2.9e-185	64.9
WP_079999957.1\|1737078_1737552_-	TerS protein	A0A0F7L441	uncultured_marine_virus	2.5e-28	53.0
WP_050773503.1\|1737602_1738199_+	hypothetical protein	NA	NA	NA	NA
WP_148311823.1\|1739065_1739461_-	hypothetical protein	NA	NA	NA	NA
WP_004526594.1\|1739514_1740159_-	S24 family peptidase	A5X9F5	Aeromonas_virus	8.8e-16	29.6
WP_148311824.1\|1740628_1740955_+	hypothetical protein	NA	NA	NA	NA
WP_011325385.1\|1740979_1741699_+	hypothetical protein	B3VGL7	Mycobacterium_virus	4.0e-33	45.9
WP_004526595.1\|1741746_1742070_+	hypothetical protein	NA	NA	NA	NA
WP_004526596.1\|1742415_1743030_+	hypothetical protein	NA	NA	NA	NA
WP_038724111.1\|1743212_1743455_+	hypothetical protein	B5BTU9	Ralstonia_phage	6.4e-20	69.7
WP_004526598.1\|1743706_1744078_+	hypothetical protein	A0A077KRW5	Ralstonia_phage	6.0e-09	40.8
WP_004526599.1\|1744077_1744329_+	hypothetical protein	NA	NA	NA	NA
WP_148311825.1\|1744345_1744576_+	hypothetical protein	NA	NA	NA	NA
WP_004526600.1\|1744585_1744873_+	hypothetical protein	NA	NA	NA	NA
WP_038724025.1\|1744869_1745076_+	Fragile-X-F family protein	NA	NA	NA	NA
WP_148311830.1\|1745337_1745907_+	DNA primase	A0A077KVN4	Ralstonia_phage	3.5e-48	54.9
WP_011325386.1\|1746067_1747363_+	AAA family ATPase	A0A068Q6G7	Ralstonia_phage	4.1e-153	61.6
WP_038724028.1\|1747502_1747799_+	hypothetical protein	NA	NA	NA	NA
WP_004526606.1\|1748089_1749010_+	ATP-dependent DNA ligase	A0A2H4GY71	Pseudomonas_phage	2.3e-65	50.8
WP_154233169.1\|1749176_1749341_+	hypothetical protein	NA	NA	NA	NA
WP_038724112.1\|1749340_1749901_+	metal-dependent phosphohydrolase	A0A1W6JP41	Morganella_phage	1.0e-36	45.9
WP_004526609.1\|1749947_1752350_+	hypothetical protein	A0A068Q7T8	Ralstonia_phage	3.7e-293	62.6
1750463:1750478	attL	NA	NA	NA	NA
WP_004526610.1\|1752370_1753201_+	hypothetical protein	A0A068Q6Y4	Ralstonia_phage	1.0e-69	55.5
WP_079999940.1\|1753197_1753623_+	hypothetical protein	A0A2P9JZS3	Salmonella_phage	5.3e-17	35.7
WP_004526611.1\|1753778_1754555_+	hypothetical protein	A0A068Q5R1	Ralstonia_phage	1.8e-68	52.9
WP_038724029.1\|1754526_1754916_+	recombination endonuclease VII family protein	A0A1L7DQG2	Ralstonia_phage	4.5e-23	57.8
WP_011325389.1\|1754912_1755701_+	hypothetical protein	B5BTV8	Ralstonia_phage	5.8e-94	62.3
WP_004526614.1\|1755710_1756301_+	hypothetical protein	A0A1L7DQD4	Ralstonia_phage	5.0e-26	42.8
WP_038724030.1\|1756424_1756652_+	hypothetical protein	NA	NA	NA	NA
WP_148311826.1\|1756638_1757142_+	hypothetical protein	A0A291LAS9	Bordetella_phage	6.4e-46	65.0
WP_143285492.1\|1757167_1757416_+	hypothetical protein	NA	NA	NA	NA
WP_004526617.1\|1757412_1757604_+	hypothetical protein	NA	NA	NA	NA
WP_004526618.1\|1758104_1760414_+	DNA-dependent RNA polymerase	A0A2R2ZGE5	Ralstonia_phage	1.8e-74	31.2
WP_079999941.1\|1760637_1761327_+	hypothetical protein	Q3HQV2	Burkholderia_phage	7.9e-71	59.8
WP_038724033.1\|1761412_1761604_+	hypothetical protein	NA	NA	NA	NA
WP_038724034.1\|1761635_1761893_+	hypothetical protein	NA	NA	NA	NA
WP_076823102.1\|1762097_1762553_-	lysozyme	A0A0A8KXN5	Burkholderia_phage	2.4e-31	49.3
WP_011325390.1\|1762687_1764136_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004526624.1\|1764415_1765516_-\|integrase	tyrosine-type recombinase/integrase	Q6JIJ8	Burkholderia_virus	5.4e-215	100.0
WP_004526625.1\|1765515_1765740_-	DUF4224 domain-containing protein	Q6JIJ7	Burkholderia_virus	2.9e-35	100.0
WP_004526626.1\|1765785_1766010_+	hypothetical protein	Q6JIJ6	Burkholderia_virus	1.8e-37	100.0
WP_004552963.1\|1766091_1766301_+	hypothetical protein	Q6JIJ5	Burkholderia_virus	1.8e-34	100.0
WP_004526628.1\|1766309_1766555_+	hypothetical protein	Q6JIJ4	Burkholderia_virus	1.5e-37	100.0
WP_011325392.1\|1766627_1767638_-	phage Gp37/Gp68 family protein	Q6JIJ3	Burkholderia_virus	1.7e-199	99.4
WP_004526630.1\|1767595_1767934_-	hypothetical protein	Q6JIJ2	Burkholderia_virus	3.1e-60	100.0
WP_015973597.1\|1767923_1768166_-	hypothetical protein	Q6JIJ1	Burkholderia_virus	1.9e-40	100.0
WP_004526632.1\|1768158_1768416_-	hypothetical protein	Q6JIJ0	Burkholderia_virus	1.7e-42	100.0
WP_004526633.1\|1768412_1770341_-	hypothetical protein	Q6JII8	Burkholderia_virus	9.4e-263	98.8
WP_004526634.1\|1770355_1770634_-	hypothetical protein	Q6JII7	Burkholderia_virus	3.0e-45	100.0
WP_004526635.1\|1770633_1771029_-	hypothetical protein	Q6JII6	Burkholderia_virus	9.4e-69	100.0
WP_004526636.1\|1771031_1771697_-	hypothetical protein	Q6JII5	Burkholderia_virus	2.0e-124	100.0
WP_004526637.1\|1771710_1772418_-	hypothetical protein	Q6JII4	Burkholderia_virus	7.7e-130	100.0
WP_004548444.1\|1772691_1773504_-	prohibitin family protein	Q6JII3	Burkholderia_virus	1.1e-145	100.0
WP_004537646.1\|1773500_1773650_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_004552960.1\|1773900_1774491_+	hypothetical protein	Q6JII1	Burkholderia_virus	6.4e-106	100.0
WP_004552959.1\|1774680_1774935_+	hypothetical protein	Q8W6Q4	Burkholderia_virus	6.3e-42	97.6
WP_009946438.1\|1774931_1775279_-	hypothetical protein	Q6JIH8	Burkholderia_virus	3.8e-58	100.0
WP_009946436.1\|1775513_1775621_-	hypothetical protein	Q6JIH6	Burkholderia_virus	1.3e-12	100.0
WP_015967385.1\|1775622_1775754_-	hypothetical protein	Q8W6Q2	Burkholderia_virus	5.2e-16	100.0
WP_004526640.1\|1775763_1776039_-	hypothetical protein	Q6JIH4	Burkholderia_virus	7.2e-44	100.0
WP_004526641.1\|1776540_1777434_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.3e-170	99.3
WP_004526642.1\|1777588_1778878_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.0e-233	99.1
WP_024429369.1\|1778961_1779225_+	hypothetical protein	Q6JIH1	Burkholderia_virus	7.9e-40	97.7
WP_015973603.1\|1779221_1779623_-	hypothetical protein	Q6JIH0	Burkholderia_virus	1.7e-65	100.0
WP_004552953.1\|1779686_1780001_+	transcriptional regulator	Q6JIG9	Burkholderia_virus	3.0e-54	100.0
WP_024429368.1\|1780117_1780450_+	hypothetical protein	Q6JIG8	Burkholderia_virus	7.6e-56	97.3
WP_004526644.1\|1780446_1780665_-	hypothetical protein	A4JX47	Burkholderia_virus	1.9e-31	98.6
WP_009896483.1\|1780879_1781320_+	hypothetical protein	Q6JIG6	Burkholderia_virus	2.9e-79	100.0
WP_122650738.1\|1781267_1782560_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	8.8e-116	54.4
WP_004526647.1\|1782556_1783693_+	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	1.2e-217	96.6
WP_004526649.1\|1784014_1784836_+	hypothetical protein	Q8W6P2	Burkholderia_virus	5.7e-145	98.9
WP_004526650.1\|1784832_1785093_+	helix-turn-helix domain-containing protein	Q6JIG2	Burkholderia_virus	4.2e-41	100.0
WP_038717883.1\|1785246_1786239_+	hypothetical protein	A4JX55	Burkholderia_virus	4.9e-175	98.8
WP_004526652.1\|1786235_1786787_+	DUF1064 domain-containing protein	A4JX56	Burkholderia_virus	5.1e-97	99.5
WP_004526654.1\|1787168_1787594_+	DUF1364 family protein	Q6JIF7	Burkholderia_virus	1.5e-80	100.0
WP_038724035.1\|1787904_1788165_+	hypothetical protein	Q8W6N5	Burkholderia_virus	2.9e-42	93.0
WP_004526657.1\|1788173_1788821_+	hypothetical protein	Q8W6N4	Burkholderia_virus	8.6e-104	91.2
1791163:1791178	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1795832 : 1825069

Burkholderia_virus(100.0%)

portal,tail,terminase,capsid,head,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004526660.1\|1795832_1796219_-	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	1.0e-64	99.2
WP_004526661.1\|1796215_1796473_-	type II toxin-antitoxin system RelE/ParE family toxin	Q8W6N1	Burkholderia_virus	5.4e-41	98.8
WP_004526662.1\|1796533_1796890_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	2.6e-62	94.9
WP_004526663.1\|1797037_1797523_+\|terminase	phage terminase small subunit P27 family	Q8W6V0	Burkholderia_virus	2.9e-88	99.4
WP_004526664.1\|1797532_1799248_+\|terminase	terminase large subunit	Q6JIN0	Burkholderia_virus	0.0e+00	100.0
WP_004526665.1\|1799244_1800558_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	3.4e-248	99.8
WP_004526666.1\|1800538_1801225_+\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	7.7e-127	100.0
WP_004526667.1\|1801227_1802484_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	4.9e-228	100.0
WP_004526668.1\|1802775_1803138_+\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	4.4e-57	100.0
WP_015973594.1\|1803139_1803469_+\|head	phage head closure protein	Q6JIM4	Burkholderia_virus	1.2e-56	100.0
WP_004526670.1\|1803461_1803884_+	HK97 gp10 family phage protein	Q6JIM3	Burkholderia_virus	1.5e-69	100.0
WP_004526671.1\|1803880_1804228_+	DUF3168 domain-containing protein	Q6JIM2	Burkholderia_virus	4.5e-59	100.0
WP_004526672.1\|1804289_1804748_+	hypothetical protein	Q6JIM1	Burkholderia_virus	4.9e-61	100.0
WP_004526673.1\|1804775_1805240_+\|tail	tail assembly protein	Q6JIM0	Burkholderia_virus	9.3e-84	100.0
WP_004526674.1\|1805239_1805524_+	DUF4035 domain-containing protein	Q6JIL9	Burkholderia_virus	6.8e-45	100.0
WP_004526675.1\|1805537_1809602_+\|tail	phage tail tape measure protein	Q6JIL8	Burkholderia_virus	0.0e+00	99.2
WP_011325402.1\|1809598_1809937_+\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	2.3e-60	98.2
WP_004526677.1\|1809945_1811334_+\|tail	tail fiber domain-containing protein	Q6JIL6	Burkholderia_virus	3.9e-271	99.4
WP_004526678.1\|1811330_1812014_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	1.3e-134	100.0
WP_004526679.1\|1812063_1812816_+	C40 family peptidase	Q6JIL4	Burkholderia_virus	7.1e-150	100.0
WP_004526680.1\|1812812_1813397_+\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	6.8e-100	99.5
WP_004526681.1\|1813393_1816699_+\|tail	phage tail protein	Q6JIL2	Burkholderia_virus	0.0e+00	99.9
WP_004552931.1\|1816743_1817010_+	hypothetical protein	Q8W6S9	Burkholderia_virus	2.5e-49	100.0
WP_004526683.1\|1817009_1817744_+	hypothetical protein	Q8W6S8	Burkholderia_virus	7.9e-146	99.6
WP_004552929.1\|1817786_1817999_+\|holin	class II holin gp23	Q8W6S7	Burkholderia_virus	6.6e-29	100.0
WP_004552928.1\|1817991_1818483_+	lysozyme	Q6JIK8	Burkholderia_virus	7.8e-89	100.0
WP_004552927.1\|1818482_1819028_+	lysozyme	Q8W6S5	Burkholderia_virus	4.3e-88	100.0
WP_004526686.1\|1819170_1819959_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	6.9e-156	100.0
WP_004526687.1\|1820211_1820946_+	hypothetical protein	Q8W6S3	Burkholderia_virus	1.6e-130	100.0
WP_004552925.1\|1821127_1821688_+	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	7.5e-104	100.0
WP_004552924.1\|1821684_1822419_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.6e-138	100.0
WP_004526688.1\|1822446_1823538_+	DUF3396 domain-containing protein	Q8W6S0	Burkholderia_virus	1.5e-212	100.0
WP_011325405.1\|1823670_1824312_-	hypothetical protein	Q8W6R9	Burkholderia_virus	1.2e-118	100.0
WP_015967370.1\|1824397_1825069_+	DUF159 family protein	Q8W6R8	Burkholderia_virus	6.8e-136	100.0

DBSCAN-SWA_6

1851854 : 1858761

Burkholderia_phage(28.57%)

transposase,integrase

attL 1853501:1853515|attR 1865251:1865265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038724042.1\|1851854_1852124_+	CopG family transcriptional regulator	A0A0A8JBA5	Ralstonia_phage	2.4e-23	60.5
WP_076866390.1\|1852475_1852697_-	DNA-binding protein	NA	NA	NA	NA
WP_011325413.1\|1853155_1854175_-\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	4.8e-48	37.6
1853501:1853515	attL	NA	NA	NA	NA
WP_076809523.1\|1854333_1854777_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5NNJ1	Burkholderia_phage	8.2e-21	45.6
WP_009941993.1\|1854727_1854934_+	hypothetical protein	Q8W6S4	Burkholderia_virus	3.7e-16	86.7
WP_004521809.1\|1854954_1855668_-	hypothetical protein	A4PE26	Ralstonia_virus	1.5e-32	43.3
WP_085952178.1\|1855761_1856873_-\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_058035839.1\|1856939_1857395_-	hypothetical protein	NA	NA	NA	NA
WP_011325414.1\|1857366_1857840_-	hypothetical protein	NA	NA	NA	NA
WP_076849822.1\|1857832_1858342_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.9e-19	39.4
WP_004526711.1\|1858338_1858761_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.3e-15	47.0
1865251:1865265	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1906498 : 1951999

uncultured_Caudovirales_phage(25.0%)

transposase,plate,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004526742.1\|1906498_1908349_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004526743.1\|1908376_1909792_-	hypothetical protein	NA	NA	NA	NA
WP_004526744.1\|1909815_1910082_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_004521773.1\|1910341_1910569_-	hypothetical protein	NA	NA	NA	NA
WP_004526747.1\|1910602_1913410_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.0e-28	24.8
WP_004526748.1\|1913412_1914246_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_071810700.1\|1914943_1915543_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_004531151.1\|1915665_1916259_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_004536040.1\|1916255_1918664_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_004526753.1\|1918772_1922108_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004521767.1\|1922085_1922577_+	lipoprotein	NA	NA	NA	NA
WP_004550605.1\|1922581_1922803_+	hypothetical protein	NA	NA	NA	NA
WP_009930788.1\|1922893_1923433_+	lipoprotein	NA	NA	NA	NA
WP_004550603.1\|1923644_1923908_+	hypothetical protein	NA	NA	NA	NA
WP_004526757.1\|1923926_1924232_+	hypothetical protein	NA	NA	NA	NA
WP_004526758.1\|1924244_1927085_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.1e-20	25.7
WP_004526759.1\|1927086_1927962_+	hypothetical protein	NA	NA	NA	NA
WP_076805070.1\|1927982_1930802_+	hypothetical protein	NA	NA	NA	NA
WP_076805091.1\|1931447_1931840_+	hypothetical protein	NA	NA	NA	NA
WP_004526762.1\|1931970_1932222_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_111963064.1\|1932179_1933088_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004526764.1\|1933131_1933377_+	hypothetical protein	NA	NA	NA	NA
WP_076851599.1\|1933717_1934011_+	hypothetical protein	NA	NA	NA	NA
WP_076851597.1\|1934933_1935647_+	hypothetical protein	NA	NA	NA	NA
WP_009951519.1\|1936219_1936387_-	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	9.5e-07	50.0
WP_009951521.1\|1936601_1936862_+	hypothetical protein	NA	NA	NA	NA
WP_004526769.1\|1937143_1937590_+	hypothetical protein	NA	NA	NA	NA
WP_153260188.1\|1938733_1939159_+	hypothetical protein	NA	NA	NA	NA
WP_076809788.1\|1940344_1940737_+	hypothetical protein	NA	NA	NA	NA
WP_004526773.1\|1940996_1942310_+	divalent metal cation transporter	NA	NA	NA	NA
WP_004521751.1\|1942372_1942534_+	hypothetical protein	NA	NA	NA	NA
WP_009930780.1\|1942825_1943080_-	hypothetical protein	NA	NA	NA	NA
WP_004552605.1\|1943164_1943473_+	lipoprotein	NA	NA	NA	NA
WP_004525642.1\|1943666_1944887_+\|transposase	ISL3-like element ISBma1 family transposase	A9YX10	Burkholderia_phage	2.7e-239	99.8
WP_004193855.1\|1945049_1945331_-	H-NS histone family protein	NA	NA	NA	NA
WP_009930779.1\|1945330_1945591_-	hypothetical protein	NA	NA	NA	NA
WP_004526776.1\|1945798_1946782_-	hydrolase	NA	NA	NA	NA
WP_004538381.1\|1946826_1948113_-	MFS transporter	NA	NA	NA	NA
WP_009920897.1\|1948178_1948316_-	hypothetical protein	NA	NA	NA	NA
WP_004196705.1\|1948529_1949423_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004531175.1\|1949760_1949982_+	hypothetical protein	NA	NA	NA	NA
WP_004526780.1\|1950067_1950253_+	hypothetical protein	NA	NA	NA	NA
WP_004526781.1\|1950239_1950785_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526782.1\|1950837_1951398_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526783.1\|1951474_1951999_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_8

2764385 : 2768869

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527234.1\|2764385_2764619_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|2764654_2764882_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_009937072.1\|2765135_2765531_+	hypothetical protein	NA	NA	NA	NA
WP_004527236.1\|2765811_2766237_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2766233_2766740_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_038763587.1\|2767081_2767684_+	hypothetical protein	NA	NA	NA	NA
WP_076804729.1\|2768104_2768416_+	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_076882618.1\|2768436_2768622_-	hypothetical protein	Q8W6S4	Burkholderia_virus	5.8e-21	83.3
WP_004527242.1\|2768605_2768869_-	hypothetical protein	Q8W6S4	Burkholderia_virus	8.5e-26	84.1

DBSCAN-SWA_9

3286189 : 3295077

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527505.1\|3286189_3287032_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.6e-17	27.0
WP_004522362.1\|3287374_3288298_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_011325778.1\|3288425_3289802_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|3290028_3290931_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_076896557.1\|3290942_3291269_-	hypothetical protein	NA	NA	NA	NA
WP_004189725.1\|3291281_3291599_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|3291670_3292663_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|3292721_3293645_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004527508.1\|3293676_3295077_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.5

DBSCAN-SWA_10

3630018 : 3639263

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3630018_3631566_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004527677.1\|3631602_3632130_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3632126_3632810_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3632874_3633690_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004194350.1\|3633873_3635880_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	9.7e-53	35.0
WP_004522147.1\|3635913_3637044_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_004527678.1\|3637310_3639263_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_11

3923852 : 3981532

Burkholderia_phage(41.67%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|3923852_3925151_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|3925217_3926300_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004527812.1\|3926343_3927201_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|3927280_3927589_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|3927603_3928200_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004521980.1\|3928483_3929272_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|3929637_3931239_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3931672_3931876_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004198058.1\|3932062_3933325_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|3934033_3934639_-	nitroreductase family protein	NA	NA	NA	NA
WP_004198060.1\|3934600_3935176_+	hypothetical protein	NA	NA	NA	NA
WP_004527817.1\|3935135_3936419_-	MFS transporter	NA	NA	NA	NA
WP_004527818.1\|3936577_3937234_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_076808608.1\|3937224_3937575_+	hypothetical protein	NA	NA	NA	NA
WP_004527819.1\|3937571_3938195_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004527820.1\|3938279_3939182_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004527821.1\|3939309_3940446_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009938781.1\|3940442_3940658_-	hypothetical protein	NA	NA	NA	NA
WP_004521968.1\|3940802_3941921_-	acyltransferase	NA	NA	NA	NA
WP_004527823.1\|3941919_3942399_+	hypothetical protein	NA	NA	NA	NA
WP_011205258.1\|3942358_3942805_-	hypothetical protein	NA	NA	NA	NA
WP_009932025.1\|3943331_3943427_-	hypothetical protein	NA	NA	NA	NA
WP_004204896.1\|3943465_3945631_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_076811888.1\|3946212_3946611_+	hypothetical protein	NA	NA	NA	NA
WP_011205259.1\|3946653_3946923_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|3947025_3947256_+	hypothetical protein	NA	NA	NA	NA
WP_004527830.1\|3947489_3947846_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|3947871_3949140_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|3949154_3951416_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004527831.1\|3951412_3952861_+	TolC family protein	NA	NA	NA	NA
WP_004521960.1\|3953070_3954039_-	hypothetical protein	NA	NA	NA	NA
WP_004527832.1\|3954050_3955016_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_009945524.1\|3955033_3955312_+	hypothetical protein	NA	NA	NA	NA
WP_004527833.1\|3955287_3959181_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|3959177_3960167_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004527834.1\|3960171_3961104_+	OmpA family protein	NA	NA	NA	NA
WP_004527835.1\|3961302_3962424_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004521956.1\|3962513_3965183_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.7e-89	32.1
WP_004200010.1\|3965216_3966317_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011205262.1\|3966280_3968107_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011205263.1\|3968198_3968711_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3968738_3969242_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3969314_3970805_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3970821_3971340_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3971376_3972048_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3972421_3973036_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|3973144_3974491_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|3974487_3975273_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004527840.1\|3975374_3975740_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_004527842.1\|3976761_3977364_-	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	1.6e-80	87.9
WP_004527843.1\|3977261_3977675_-\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.0e-71	100.0
WP_004527844.1\|3977667_3977994_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	6.6e-52	98.1
WP_004527845.1\|3979013_3979538_+	hypothetical protein	A4JWV5	Burkholderia_virus	4.9e-57	61.6
WP_038724003.1\|3979534_3980293_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	8.7e-55	50.9
WP_004527846.1\|3980317_3981532_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	7.4e-141	67.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007435

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection