CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009615	Parabacteroides distasonis ATCC 8503, complete sequence	2 crisprs	PrimPol,cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3	0	2	2	0

1. NC_009615

CRISPR-Cas detection and classification

Crispr_ID: NC_009615_1

• CRISPR_ID: NC_009615_1
• CRISPR_location: 1380418-1380710
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 4 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NC_009615_1

Consensus_repeat	Method
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	PILER-CR
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CRT

spacers of NC_009615_1

>1.1|1380450|34|NC_009615|PILER-CR,CRISPRCasFinder,CRT
CAATGTCTTCGGGGTATATTCCTTGCCTTGATAG
>1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT
TTGCCATGATATTAGTTTTTAATGTTATTTATT
>1.3|1380581|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT
CTCCAGTACCTTTTTAAGCTGATATAGGCTCAA
>1.4|1380646|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT
ATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTC

CRISPR arrays and Neighbor proteins around NC_009615_1

CRISPR arrays

The CRISPR arrays of NC_009615_1

>merge|NC_009615|1|1380418-1380710|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAACCAATGTCTTCGGGGTATATTCCTTGCCTTGATAGGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTTGCCATGATATTAGTTTTTAATGTTATTTATTGTCGCACCCCGTGTGGGTGCGTGGATTGAAACCTCCAGTACCTTTTTAAGCTGATATAGGCTCAAGTCGCACCCCGTGTGGGTGCGTGGATTGAAACATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTCGTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NC_009615|1|1|1380418-1380710|PILER-CR
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CAATGTCTTCGGGGTATATTCCTTGCCTTGATAG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTGCCATGATATTAGTTTTTAATGTTATTTATT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CTCCAGTACCTTTTTAAGCTGATATAGGCTCAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	ATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NC_009615|1|1|1380418-1380710|CRISPRCasFinder
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CAATGTCTTCGGGGTATATTCCTTGCCTTGATAG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTGCCATGATATTAGTTTTTAATGTTATTTATT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CTCCAGTACCTTTTTAAGCTGATATAGGCTCAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	ATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NC_009615|1|1|1380418-1380710|CRT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CAATGTCTTCGGGGTATATTCCTTGCCTTGATAG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTGCCATGATATTAGTTTTTAATGTTATTTATT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CTCCAGTACCTTTTTAAGCTGATATAGGCTCAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	ATGGCCTTGAGGTCGTTGTGCCCTGTCCATCTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009615.1|WP_011966342.1|1372738_1374964_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_009615.1|WP_011966349.1|1381559_1384439_-|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl|CDD|378929
NC_009615.1|WP_011966343.1|1374978_1375659_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl|CDD|187782
NC_009615.1|WP_011966341.1|1371318_1372668_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240548
NC_009615.1|WP_005856744.1|1390862_1391672_-|DUF1080-domain-containing-protein	unknown	unknown	gnl|CDD|368908
NC_009615.1|WP_041525563.1|1375655_1377374_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245
NC_009615.1|WP_011966352.1|1387237_1387699_-|DUF4293-domain-containing-protein	unknown	unknown	gnl|CDD|379484
NC_009615.1|WP_011966340.1|1370300_1371329_-|agmatine-deiminase-family-protein	unknown	unknown	gnl|CDD|377332
NC_009615.1|WP_011966350.1|1384508_1385501_-|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl|CDD|381377
NC_009615.1|WP_005856746.1|1389454_1390756_-|phenylacetate--CoA-ligase	unknown	unknown	gnl|CDD|341239
NC_009615.1|WP_005856767.1|1378925_1379948_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NC_009615.1|WP_005856752.1|1387775_1388108_-|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl|CDD|376482
NC_009615.1|WP_005856750.1|1388132_1388942_-|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl|CDD|274513
NC_009615.1|WP_011966339.1|1369405_1370281_-|carbon-nitrogen-hydrolase	unknown	unknown	gnl|CDD|143597
NC_009615.1|WP_011966351.1|1385523_1387056_-|sulfatase	unknown	unknown	gnl|CDD|293763
NC_009615.1|WP_011966348.1|1380931_1381408_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|224867
NC_009615.1|WP_011966346.1|1378263_1378929_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_009615.1|WP_005856748.1|1389008_1389434_-|hypothetical-protein	unknown	unknown	gnl|CDD|227090
NC_009615.1|WP_011966345.1|1377400_1378252_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NC_009615.1|WP_005856765.1|1379957_1380248_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009615.1|WP_011966342.1|1372738_1374964_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	6.1e-59	194.7	0.5
NC_009615.1|WP_011966343.1|1374978_1375659_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	6.5e-73	239.5	0.1
NC_009615.1|WP_005856767.1|1378925_1379948_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	2.6e-135	445.5	0.0
NC_009615.1|WP_011966346.1|1378263_1378929_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	9.9e-35	114.8	0.3
NC_009615.1|WP_041525563.1|1375655_1377374_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	1.4e-135	447.6	0.0
NC_009615.1|WP_011966345.1|1377400_1378252_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.6e-118	387.7	0.4
NC_009615.1|WP_005856765.1|1379957_1380248_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.2e-28	91.9	1.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009615.1|WP_011966342.1|1372738_1374964_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.94165e-52
NC_009615.1|WP_011966349.1|1381559_1384439_-|PD-(D/E)XK-nuclease-family-protein	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.76313e-39
NC_009615.1|WP_011966343.1|1374978_1375659_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.34681e-82
NC_009615.1|WP_011966341.1|1371318_1372668_-|MATE-family-efflux-transporter	gnl|CDD|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	7.9793e-138
NC_009615.1|WP_005856744.1|1390862_1391672_-|DUF1080-domain-containing-protein	gnl|CDD|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	7.27192e-54
NC_009615.1|WP_041525563.1|1375655_1377374_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_009615.1|WP_011966352.1|1387237_1387699_-|DUF4293-domain-containing-protein	gnl|CDD|379484	pfam14126, DUF4293, Domain of unknown function (DUF4293). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 154 amino acids in length.	1.88367e-45
NC_009615.1|WP_011966340.1|1370300_1371329_-|agmatine-deiminase-family-protein	gnl|CDD|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	7.50434e-170
NC_009615.1|WP_011966350.1|1384508_1385501_-|L-glyceraldehyde-3-phosphate-reductase	gnl|CDD|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NC_009615.1|WP_005856746.1|1389454_1390756_-|phenylacetate--CoA-ligase	gnl|CDD|341239	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence.	0
NC_009615.1|WP_005856767.1|1378925_1379948_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.96881e-168
NC_009615.1|WP_005856752.1|1387775_1388108_-|DNA-directed-RNA-polymerase-subunit-omega	gnl|CDD|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	0.000107095
NC_009615.1|WP_005856750.1|1388132_1388942_-|outer-membrane-protein-assembly-factor-BamD	gnl|CDD|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.35402e-22
NC_009615.1|WP_011966339.1|1369405_1370281_-|carbon-nitrogen-hydrolase	gnl|CDD|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	8.27647e-174
NC_009615.1|WP_011966351.1|1385523_1387056_-|sulfatase	gnl|CDD|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	4.87421e-178
NC_009615.1|WP_011966348.1|1380931_1381408_+|GAF-domain-containing-protein	gnl|CDD|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	4.15468e-70
NC_009615.1|WP_011966346.1|1378263_1378929_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.82994e-25
NC_009615.1|WP_005856748.1|1389008_1389434_-|hypothetical-protein	gnl|CDD|227090	COG4747, COG4747, ACT domain-containing protein [General function prediction only].	1.95331e-39
NC_009615.1|WP_011966345.1|1377400_1378252_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.14951e-153
NC_009615.1|WP_005856765.1|1379957_1380248_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.39924e-28

Protein sequences

>NC_009615.1|WP_005856765.1|1379957_1380248_+|CRISPR-associated-endonuclease-Cas2
MHILVTYDVDTTSKEGARRLRHVAKACIDYGQRVQNSVFECEVTEAQYCLLIERIKRIIDMSLDSVRFYILNKNENKRVKVIGVETAYKVNNALII
>NC_009615.1|WP_005856767.1|1378925_1379948_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTTPEAYLSKDGQNVVVSVKQEEVFRIPAINIEGIVTFGYMGASPGVMKLCSDNSISLTFLSPHGRFISRVQSATKGNVLLRKRQYQLSDDESWSLHVARLMIGGKIQNYRNILKRYIRDYGENENINRAVQVLEHAKREALATQDKTTLIGYEGMASNAYFEVLPVLILNQKADFPFHGRNRRPPKDAVNAMLSFAYTLIANDTSAALETVGLDPYVGFLHTLRPGRTSLALDMMEELRAYLGDRFVLSLINKRQITSKDFLFQGDNGVVMTDKGKKTFISAWQARKREVIIHPYLNEKIEIGLLPYVQAMLMARYIRQDIDNYPVFLIK
>NC_009615.1|WP_011966346.1|1378263_1378929_+|CRISPR-associated-protein-Cas4
MYSEDDMLMLSGIQHFRFCPRQWALIHIEQQWDDNRLTIEGQILHKHVDDPFYRQKCGDQITLRAVNIASRELGLYGISDAIELLPSPSLEDTILHPKYPGRWRPVAVEYKHGRPKKDEVDEVQLAAQTMCLEEMYAIHIPYGVFFYGELRHRIEVAITDELRNIVRQCARDMHEIFSKAVIPKAKYERHCDKCSLKEICMPTIAKNCTTVDTYLNKHLYT
>NC_009615.1|WP_011966345.1|1377400_1378252_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEIKNRIDFVYIFDVQDGNPNGDPDAGNLPRVDAETGMGLVTDVCLKRKVRNYVQVAKGLEDGYDIFIKEKAVLNTLIDKAHDDSEVKNAKDKTDAARRFMCKNYFDVRTFGAVMSTGKNAGQVRGPIQFTFARSVDPIAAAEHSITRMAVATDAEAKKQSGDNRTMGRKATVPYGLYICHGFISANLAQQTGFSEEDLALFWEALKNMFDMDRSAARGLMSAQKLIVFKHDSVLGNAPANKLFDLVKVEKVCDGAPRSFGDYHVTIDKEHVPSNVTVEELI
>NC_009615.1|WP_041525563.1|1375655_1377374_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKALYDYYHRSGNLPIMGMELKEIGFIIVIDKCGNFLRFEDRRIDKKSAQQFLVKKSVGRSSAPVANYLYDNSQYVFGYSDKGDMESMRKYFDTFKAKVEEIYDMFSDNETMQAVYAFYQQEPSDIVEAMQNDSLWDDINKNLNKKYSTFSFLIEGDTEIVASKRKLINLESGGNDVGGGLCLVIGKHSKTVEVTTATMIPGSQATAKLVAFQVNSGYDSYGKSKGHNAPISEEAEFAYTTALNHLLRSDSHNKFMVGSRTYLFWASSDSEAAKKSEDSLFALLGRTEENDDPNMLIKLVRRTFMSIYNGVLFANKDDKFFILGLAPNSARIAVVYWNELPLREFAGLISKHFADMEIVDTRKDKKPYVGLHSILGNVTLGGKSSDATPNLPDAVVKSIFQGLPYPASLFQACIRRIRAEQSVNIGRAAIIKAYLNRLNDNNNNKKLDIMLDKENQNQGYLCGRLFAVLDKIQEDANNIHSIRERYMNSASATPAMIFATILNLSTHHQEKLNEGKQVFYEKLKQEIISKLDANGFPAHLDLQDQGRFFVGYYHQRQAFFMGKENRETEE
>NC_009615.1|WP_011966343.1|1374978_1375659_+|type-I-C-CRISPR-associated-protein-Cas5
MDYTDKEYCLEVWGDWACFSRPELKVERVSYDVITPSAARAIFEAILFKRYAMRWQVTKIEVLNPIKWTTIRRNEVGALAGKSSIFIEDKRQQKNSLLLQGVRYRIHAKLVFIPVKDRPKEAFIKHQPSDDENPMKYYQMFERRASQGQCFTQPYLGCREFAANWKYIDNTEQLAPPLAEDRDLGIMLYDMDFEGNVQKPNAMFYRVRMEQGVIVVPDKDSEEVLR
>NC_009615.1|WP_011966342.1|1372738_1374964_+|CRISPR-associated-helicase/endonuclease-Cas3
METEKQLISHLYQNKENGKWIIQTNDEHQRGVAEMATSFSGLFGLPSWGHTLGMLHDKGKERDAFQQYIRTTSGLPVTDEKSYGEHHHAFVGGILVTNLMGKSVFNLLANQIISHHTGLHDYVDAESVIEKRQLPEEINKGDIALNIPQLRKELLESPFSKLKVDMKHFHHLSRMLFSCLVDADRLNTEQFMDVESWEKRGCSSTLTDLLPKLEAHLRELQLYAPDTEVNHIRKKVQERCRKASSEEKGFYSLTVPTGGGKTLSSLLWAMKHAVNHGMNRIIIAIPYTSIIVQTAGLLKEIFGEEHVLEHHSNFNPDEIKNEEVREKAKLATENWDYPIIVTTNVQLFESMFSNKPSDCRKLHNIVNSVLILDEAQTLPTDFLQPIVDALKAYQKIFGVSVLFTTASQPVLSGLIEGTNPKANFEGIDRIIEIIPNEFALHDKLRRVKLVIDNTGKTYDEIAAEVAIYNKVLCIVNTRKDAKELYDRLPNEGIKLHLSRMMCPAHISETIRKVKALLKDKSHPIVRVIATQLVEAGVDIDFPVVFRQESGLDSILQAAGRCNREGRNTVGTTFVFSLAAEKRIPFGAMKAANNARLNLPANSDWFDPSTMTEYFYQLYCRKNTFDDKDMKHYLYNPNELCFETASKKFRLIDDDCMNIIVNWGNSMELVEKLKESGCTYPLMKQLAKFTVGVHSSDFDKLVSYGAIEEVLEGIYVLTDRVQYDKNTGLSLDNHWMEELLMI
>NC_009615.1|WP_011966341.1|1371318_1372668_-|MATE-family-efflux-transporter
MAKQNSPLVLGTEPIGKLLTQYAIPAIIAMTASSLYNMADSIFIGHGVGALAISGLALTFPLMNLAAAFGSLVGVGASTLVAVKLGQKDYEGANKVLGNVLILNVVLGVAFTIAFLFLLDPVLYFFGASENTISYARDYMRIILYGNVVTHMYLGLNAVLRSSGFPKMAMYATLASVVINCALNPLFIFGFGWGIKGSAWATVISQVISLTGQLIHFSGPKQLLHFKKGIYRLRSEIVKGILSIGLSPFLMNLCSCLIVILINRGLKEHGGDMAIGAYGIVNRIAFLFVMIIMGFNQGMQPIAGYNYGARLYSRVTDVTRLTMRWAVGVATLGFLLCQLVPSWIVRMFTSDGELISAASYGLHIVFAVFPIVGFQMVATNFFLSIGMSKKAIFLSLTRQMLFLIPCLILLPPLFGTLGVWISMPIADTVAAIVTAIVLVKQFKQFKYGT
>NC_009615.1|WP_011966340.1|1370300_1371329_-|agmatine-deiminase-family-protein
MEHNVILPAEWYPQSAVQLTWPHENTDWAPILDEVIPCFVAIAKEVIKREKLLIVCPDETAVREQLGEVDYDRVIFREMDTNDTWARDHGGISVFDEGTPMLYDFVFNGWGMKFAANHDNLITRNLCHMKTFSGEVVPANMQPFVLEGGSIESDGKGTLMTTVECLASVNRNEYLQQEELERYLKDVFGLDRILWITSGYLAGDDTDSHVDTLARFCSEDTIAYVRCEDEEDEHYEELKAMEEEIKEFTRANGEPYRLIPLPMADKVEWEGERLPATYANFLIMNGAVLVPFYDSPKDEIAKAALREAFPDREIVGINCLPLIKQHGSLHCVTMQYPEGFIE
>NC_009615.1|WP_011966339.1|1369405_1370281_-|carbon-nitrogen-hydrolase
MKVGLIQQKNTADRAANIEKLKVNIRKAAREGAELVVLQELHNGLYFCQTEDTSMFDLAETIPGPSTETFGALAKELGIVLVLSLFEKRAPGLYHNTAVVLEKDGTIAGKYRKMHIPDDPAYYEKFYFTPGDLGFEPIDTSVGRLGVLVCWDQWYPEAARLMAMRGAEMLIYPTAIGWESSDTQEEKDRQLGAWVTIQRGHAVANGLPVISVNRTGHEPDPSGQTGGIRFWGNSFAAGPQGELLTVFPNDEEEVRVIEIDKTRGENVRRWWPFFRDRRIDAFGGLTERFLV
>NC_009615.1|WP_011966348.1|1380931_1381408_+|GAF-domain-containing-protein
MAEELRIKNGDKQEMYETLLPQIASLVGNETDLIANMANVAAALKQTFGFFWVGFYRVIDNQLVLAPFQGPIACTRIKYGKGVCGTAWKETRTIIVPDVDAFPGHIACSSASRSEIVVPVIWADKVIAVLDIDSDQPDSFDETDQIFLEKIVELLPHQ
>NC_009615.1|WP_011966349.1|1381559_1384439_-|PD-(D/E)XK-nuclease-family-protein
MKPFLYQVASLFYEKWGAEVSRLAFVFPNRRTGLFFQKYLSEVADIPLFSPTILTINDLFIQLSGKQSADRISMLFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIENDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEGMIFREVVESMERGESPDLPYEQIVFVGLNALSVSEERFLAQLQKRKIADFYWDYVSDKVTDPDNKASYFVSRNRKSFPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMSSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRYIDRNPLFYFRDVLPVLNHRYILSTSPEIISSLVKEITENNKIYISHTELGKTPLLEILFTPVTGVEAFSDYLIKVLEELNKVMSALSDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIEMKIDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDYSEIRLKGFIDRVDEVRDAIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTENKGKTIQPGIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEGLRGCLDEIFNPEIPFTQTPTGKACSYCPFKGICGK
>NC_009615.1|WP_011966350.1|1384508_1385501_-|L-glyceraldehyde-3-phosphate-reductase
MEFYKAEENRYADMIYRRCGRSGILLPAVSLGLWHNFGSVDVFGNFIQIAHAAFDHGVTHFDLANNYGPAYGSAEENFGRILKKGLGAYRDEMIISTKAGYDMWPGPYGNWGSRKYLMASLDQSLKRMGLEYVDIFYSHRPDPETPIEETMGALADIVRQGKALYVGISNYDADQTRKALAVLKEHKVPCLIHQARYSMFDRWTEPDLLPVLKEEGVGMIAFSPLAQGLLTDKYLRGIPENSRAAKSTGHLQTSQVTPEAVEKARKLNEVAARRGQTLAEMALAWLLKDERVTSVLIGASSVAQLMDNLKALDNISFSGEELQEIENILI
>NC_009615.1|WP_011966351.1|1385523_1387056_-|sulfatase
MKKTQLIPIALLSVSAVANAQNTSCPPNIILFLVDDMGWEDTSLPFWTQKTHYNEVYETPNMERLAKGGMMFTQAYASSISSPTRCSLITGTNAARHRVTNWTLFKDKTTDRESDVLTLPDWNYNGVAQVGGTNNTFVGTSFVQILKNNGYHTIHCGKAHFGAIDTPGEDPHHWGFEVNIAGHAAGGLASYLGENNYGHTKDGKPYASNAIPGLEKYWGSGTFATEALTQEAIKALDKAKKYNQPFYLYMSHYAIHIPIDKDKRFYQKYIDKGLTAKEAAYAALIEGMDKSLGDLMDWLEKNGEADNTIVIFMSDNGGLSSEPGWRDGEIHTQNYPLNSGKGSAYEGGVREPMIVRWPGVVKPGSKCDKYLIIEDFYPTILEMAGIRGYKTVQPIDGVSFMPLLKGTGDPSVGRSLFWNCPNIWGNDGPGIGPTCSVRNGDWKLIYYYETGKKELFNITEDIGEHNDVARQHPDIVKRLSGELGTYLRKVDGQRPSFKATGKPVPWPDEI
>NC_009615.1|WP_011966352.1|1387237_1387699_-|DUF4293-domain-containing-protein
MLQRIQTVYLLIIVVLTVATLFLPLAVLQQGDALFSFDASGLSTMIGEPELLYPAWGLFALTAIIAIIALVTIFLYKKRILQIRLCVFNALLILGFYGFFAFLIYSLKGDMEGASVSVKIALSFPLVNLILDYLAIRNIGADEALVRSLDRLR
>NC_009615.1|WP_005856752.1|1387775_1388108_-|DNA-directed-RNA-polymerase-subunit-omega
MDYRKSNAPTNTVTRDMMKLSEETGNVYETVAIISKRANQISVEMKQDLEKKLQEFASYNDNLEEVFENREQIEISRYYEKLPKSTLIAAQEYEDGKVYYKNPAKEKNNF
>NC_009615.1|WP_005856750.1|1388132_1388942_-|outer-membrane-protein-assembly-factor-BamD
MKKVVFLLMMMTVLLSSCGEYNKILKSTDYELKYSYAKKYFNAKQYSKSATLLDELVTIFKGTAYAEESLYLLAQSYYGQKDYQTASQYFETYYTTYPKGEFTELSRFYSGYGLYLDSPDPRLDQSQTYKAIEQLQLYLEYYPQSERAEEAQNIMFELQEKLAYKELMATRLYFNLGTYMGNNFQSCVITAQNALKNYPYSKYREEFMFLIIRAKYELALVSVEEKLQGRYRDVVDEYYNYMNEYPEGNYVKQVTKFYDYASKRITDAY
>NC_009615.1|WP_005856748.1|1389008_1389434_-|hypothetical-protein
MLIKQLSIFLENKKGRFTEVAKILGEAGVNMSAFTVAENSDFGILRLIVSDTEKAISVLREKLYAVSVADVVCLHCPNQPGALAKAMDIITSAGIFIEYMYAFSQGDAANVIIRPDDVNKCAEVLKANKLELIAASDLYKL
>NC_009615.1|WP_005856746.1|1389454_1390756_-|phenylacetate--CoA-ligase
MIWNETIECMDREEMRKLQSLRLKRVVEHAYHNSPFYRKKMQEMGIAPDDIQTIDDITKLPFTVKQDLRDNYPFGLMAVPMSEIVRLHASSGTTGKPIVVGYTRKDLGIWAEVVARCLTAYGLTKNDSVQVSYGYGMFTGGLGAHAGVENIGGTVIPMSSGNTQKQIQLMHDFGAKGLACTPSYALYLAETIHQSGIPLEEFQLRVGAFGAEPWTENMRKELETKLNIKAYDIYGLTEICGPGVGGECECQNGTHLWEDHFFPEIVDPNTLQPVEPGQVGELVFTTLTKEGMPMLRYRTRDLTSLTYEKCACGRTAVRMGRILGRSDDMLIIRGVNVFPSQVESVILELPEFEAHYLIVVDRMNNTDTFQIQVEVRQEYYSDEMNKMIALKKKIAARMQSVIGLQPDIKIVEPRSIERSMGKAKHVIDKRKLV
>NC_009615.1|WP_005856744.1|1390862_1391672_-|DUF1080-domain-containing-protein
MKTLVICTAMSAMILCACGGKNTQSTEETAKVVPMAVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKVKELK

Crispr_ID: NC_009615_2

• CRISPR_ID: NC_009615_2
• CRISPR_location: 2348549-2348651
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_009615_2

Consensus_repeat	Method
AAACAAGTTTATTTTATAAACCA	CRISPRCasFinder

spacers of NC_009615_2

>2.1|2348572|57|NC_009615|CRISPRCasFinder
TCCATGGATAAAAAAATGCAAAGGAGCTGCGCATCACTCTTTGCACATCGCAAATAT

CRISPR arrays and Neighbor proteins around NC_009615_2

CRISPR arrays

The CRISPR arrays of NC_009615_2

>merge|NC_009615|2|2348549-2348651|CRISPRCasFinder
AAACAAGTTTATTTTATAAACCATCCATGGATAAAAAAATGCAAAGGAGCTGCGCATCACTCTTTGCACATCGCAAATATAGACAAGTTTATTTTATAAACCA

>NC_009615|2|2|2348549-2348651|CRISPRCasFinder
AAACAAGTTTATTTTATAAACCA	TCCATGGATAAAAAAATGCAAAGGAGCTGCGCATCACTCTTTGCACATCGCAAATAT
AGACAAGTTTATTTTATAAACCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009615.1|WP_005864725.1|2352203_2352947_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl|CDD|234689
NC_009615.1|WP_011966651.1|2345761_2348134_-|TonB-dependent-receptor	unknown	unknown	gnl|CDD|379720
NC_009615.1|WP_008780146.1|2341562_2342873_+|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl|CDD|236503
NC_009615.1|WP_005864727.1|2351242_2352193_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl|CDD|183621
NC_009615.1|WP_005854635.1|2345034_2345664_-|hypothetical-protein	unknown	unknown	gnl|CDD|273320
NC_009615.1|WP_005864731.1|2348844_2349372_+|O-acetyl-ADP-ribose-deacetylase	unknown	unknown	gnl|CDD|394878
NC_009615.1|WP_005854615.1|2354433_2355015_-|hypothetical-protein	unknown	unknown	gnl|CDD|132551
NC_009615.1|WP_011966648.1|2338068_2338902_+|PepSY-like-domain-containing-protein	unknown	unknown	gnl|CDD|371505
NC_009615.1|WP_008773450.1|2349352_2350012_-|hypothetical-protein	unknown	unknown	unknown
NC_009615.1|WP_005854619.1|2352961_2353705_+|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|234703
NC_009615.1|WP_011966649.1|2338970_2341475_-|DUF4982-domain-containing-protein	unknown	unknown	gnl|CDD|225789
NC_009615.1|WP_005854625.1|2350238_2351231_+|PhoH-family-protein	unknown	unknown	gnl|CDD|376820
NC_009615.1|WP_005854639.1|2343403_2344603_+|threonine-ammonia-lyase	unknown	unknown	gnl|CDD|236182
NC_009615.1|WP_009275783.1|2344765_2345050_-|transcriptional-regulator	unknown	unknown	gnl|CDD|316153
NC_009615.1|WP_005854641.1|2342945_2343305_-|conjugal-transfer-protein-TraF	unknown	unknown	gnl|CDD|200072
NC_009615.1|WP_005854613.1|2355021_2356374_-|gliding-motility-associated-protein-GldE	unknown	unknown	gnl|CDD|274626
NC_009615.1|WP_005854617.1|2353814_2354432_-|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl|CDD|225002
NC_009615.1|WP_009018173.1|2348138_2348510_-|DUF2141-domain-containing-protein	unknown	unknown	gnl|CDD|378303
NC_009615.1|WP_005854611.1|2356399_2356909_-|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|273179
NC_009615.1|WP_011966645.1|2336045_2336774_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009615.1|WP_005864725.1|2352203_2352947_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl|CDD|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.43283e-112
NC_009615.1|WP_011966651.1|2345761_2348134_-|TonB-dependent-receptor	gnl|CDD|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	4.233e-92
NC_009615.1|WP_008780146.1|2341562_2342873_+|anaerobic-C4-dicarboxylate-transporter	gnl|CDD|236503	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed.	0
NC_009615.1|WP_005864727.1|2351242_2352193_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl|CDD|183621	PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NC_009615.1|WP_005854635.1|2345034_2345664_-|hypothetical-protein	gnl|CDD|273320	TIGR00883, Putative_metabolite_transport_protein, metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. [Transport and binding proteins, Unknown substrate].	0.000287891
NC_009615.1|WP_005864731.1|2348844_2349372_+|O-acetyl-ADP-ribose-deacetylase	gnl|CDD|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	1.33535e-100
NC_009615.1|WP_005854615.1|2354433_2355015_-|hypothetical-protein	gnl|CDD|132551	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD. Members of this protein family are found a number of Bacteriodetes lineage bacteria, including both species such as Flavobacterium johnsoniae, which possess a poorly understood form of rapid gliding motility, and other species which apparently do not. Mutation of GldD blocks both this motility and chitin utilization in the model species, Flavobacterium johnsoniae. [Cellular processes, Chemotaxis and motility].	6.27383e-37
NC_009615.1|WP_011966648.1|2338068_2338902_+|PepSY-like-domain-containing-protein	gnl|CDD|371505	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like. This family of bacterial proteins is probably periplasmic. Members are found predominantly in microbes of the human gut and oral cavity. Structurally, one member of this family is found to show similarity to the beta-lactamase-inhibitor PepSY proteins, so the overall function may be inhibitory. There are tandem repeats of the domain on many family members.	1.55461e-19
NC_009615.1|WP_005854619.1|2352961_2353705_+|shikimate-dehydrogenase	gnl|CDD|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.49157e-72
NC_009615.1|WP_011966649.1|2338970_2341475_-|DUF4982-domain-containing-protein	gnl|CDD|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	5.80534e-55
NC_009615.1|WP_005854625.1|2350238_2351231_+|PhoH-family-protein	gnl|CDD|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	1.30813e-126
NC_009615.1|WP_005854617.1|2353814_2354432_-|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl|CDD|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	4.81376e-12
NC_009615.1|WP_009275783.1|2344765_2345050_-|transcriptional-regulator	gnl|CDD|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	8.25993e-37
NC_009615.1|WP_005854641.1|2342945_2343305_-|conjugal-transfer-protein-TraF	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	5.2821e-30
NC_009615.1|WP_005854613.1|2355021_2356374_-|gliding-motility-associated-protein-GldE	gnl|CDD|274626	TIGR03520, GldE, gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.	4.12209e-168
NC_009615.1|WP_009018173.1|2348138_2348510_-|DUF2141-domain-containing-protein	gnl|CDD|378303	pfam09912, DUF2141, Uncharacterized protein conserved in bacteria (DUF2141). This domain, found in various hypothetical prokaryotic proteins, has no known function.	6.153e-08
NC_009615.1|WP_005854611.1|2356399_2356909_-|single-stranded-DNA-binding-protein	gnl|CDD|273179	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb). All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair].	6.38203e-43
NC_009615.1|WP_005854639.1|2343403_2344603_+|threonine-ammonia-lyase	gnl|CDD|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0

Protein sequences

>NC_009615.1|WP_009018173.1|2348138_2348510_-|DUF2141-domain-containing-protein
MRRVLFILSLFMLVCGCIEARTIIVEIGNIRGNHGNILVMAQSGKDTKPVYGMAKSEKGKATIRLENVDWEKFDLSVFHDENENWQMDMLEGKGPAEGYALKSCEVKDEEATFKLKLYYPVNQ
>NC_009615.1|WP_011966651.1|2345761_2348134_-|TonB-dependent-receptor
MVRFLLLSLWILAIGGGSAQKISGQTVYKAHVSDAEGNAVEYATAVLLSGEKQVGGAVANSDGDFSMEAEAGKYRLVVQCLGYEPLRKELILPIKRRDSLILDLSNHVLREVVVRAKNIERKADRFIMSVMPSAGKDGTELLSQAPGVWLSDGTISINGAQGAKVFVDDREIRLTGEELLAYLRSLKSEDIKRIEVIPIAGVEYEASTKGGVIKISLRRRPDNGMQGYVSLGTSLSPSLQGYIPSASVNARVGKWSLNGAVSGTFTPRDKGEMNSNREYGTVGNKFVSQSLYDTDSKYGNGRVGAIFEIDSLNSVGAEIEYINQASDGTSWSQTDLVKNSYPMKSTGNYRQKDDYNTFSATVNYLRKMDERGSIFKVIADFVNKRSTGDNLHTIRYEQSNWSRDTVYRSHAAADYDMATTDISFQKNLREKMSLKIGAKYTYTLMDDHSLYEGLNSSGSWIPNEEYGYTLRYNENIVGAYASFSAEIKNWSFVAGVRAEYSKTSDRSEDFSRDYLDLFPNLNVTYAFDPIKRWMLVGQYARNIERPPFYTLNPNRIQSSDYSYQIGNPYLRPTYINRFSVTLVYNYRYTVTVGGNLHHDLIREFCKQDVVNPDVSYITYENHDRENHWFVAVSLPYQPFTWCNLTGNFIGVRQDIRMTELSSFSSHYLGFANAIATFTLPAGFTVEARYSGTSRLYSGNSEVAPRHTVGVMARKKLLNDKLLLAVSVDNIFNQANEYASTLDVYRTSSRYENGLTGRVFKVALTWNFNSGKKVRKSKIEIGSERSRLNEK
>NC_009615.1|WP_005854635.1|2345034_2345664_-|hypothetical-protein
MEDRKLSEKESLDIITQMINSSKRNMKVGSGNVLLYWGYFTVLLSVVISSLIVYTQNYIWSWGWMLMFAVGPVISYKQRGCEPAVVTYTDKTISSVWQVFGCMFGLTFVLIAAFCVLYEQSVNFILMLPLSLLYCGLGVSINGIILREKWMIYSPVVAFVLVIYMLMSLINHGPVTVLWYLYFGLSFVVMMIIPGHILNNKAKKQCLKN
>NC_009615.1|WP_009275783.1|2344765_2345050_-|transcriptional-regulator
MFKELDPLLHSQLRLAVMSILLSVEEAEFVYIKEKTNATAGNLSVQLDKLNEAGYIEIEKGFAGKKPRTVCRITDKGRLAMEEYVNTLRQYINI
>NC_009615.1|WP_005854639.1|2343403_2344603_+|threonine-ammonia-lyase
MLTLDKIYQASYALKTVIRRTDLISAPNINPESHIFLKPENLQVTGSFKVRGACFKIAQLTEEEKSHGVVACSAGNHAQGVALAATAHGIKSLICLPDNAPISKVEATKSYGADVCLVEGVYDDAYNKALQLKDEKGYTFIHPFDDEDVIAGQGTIGLELLEQLPEVEAVIIPIGGGGLISGVAYAIKNLNPDIRVYGVQAKGAPSMLNSIEHGKIERLEGVRTIADGIAVKEPGIHTFDLCQQYVDEIVSVTDDEISTAILALIEQHKLIAEGAGAVAVAAAMFNKVPIKGKKVICLISGGNIDVNILSRVIGRGLQKSGRSCSMTIELVDKPGQLQHVSEIIASTGANVVSVYHERVSHTADINGCYLRLEMETRNQQQINEIRQLLTVSGYKIVEG
>NC_009615.1|WP_005854641.1|2342945_2343305_-|conjugal-transfer-protein-TraF
MVVIDLTKDGFIANVGDFEANPKDWKYIGSRPCLIDFHAPWCGYCKRLSPILDEFAKEFDGKIYIYKVDVDQEEALETAFNIRTIPTLMFCPLDGPREMMIGTMGKLELKQLIQEKLLK
>NC_009615.1|WP_008780146.1|2341562_2342873_+|anaerobic-C4-dicarboxylate-transporter
MLLQLAFVLIAIIIGARIGGIGLGVLGGLGLGILTFGFGLQPTSPPIDVMLMIVAVIAAASCMQAAGGLDLMVKWAEKLLRKNPQRITILSPLVTYLFTFIAGTGHVAYSVLPVIAEVATETKIRPERPMAIAVIASQQAITASPISAATVALLSMLSGYNISLMNILMISVPCTLLGVLAGAIYSLKVGKELDQDPEYLKRVANHEFSTEHYEAKGVENQMKAALSVSIFVLATIAIVIFGSMESLRPVFTVGTEKVSMQMSHIIEVLMLTASAFILLFTKTDGIKAAQGSVFSAGMQAVVAIFGIAWMGDTFIAGNMTELKGSIEHIVTQMPWLFGLALFVMSILLFSQAATIRALLPLGIALGISPYMLIALFPAVNGYFFIPNYPTVVAAINFDRTGTTRIGKYILNHSFMMPGLIATGVSVGLGLLFIQFI
>NC_009615.1|WP_011966649.1|2338970_2341475_-|DUF4982-domain-containing-protein
MKRTSFAILIGLFCLFPALFSQVRSEFLLEKNWKFTREDRPEFINPTFNDSKWQSVTVPHDWAIYGPFSSQNDKQEVAIAQDGQTEAMEHAGRTGGLPFVGVGWYRTEFEVPQFTDGKRATILFDGAMSHAKVYVNGQEVGYWPYGYNSFYFDITKQLMPGKKNTLAVRLENLPESSRWYPGAGLYRNVHVIVTENAYIPVWGTYITTPTATKEFAKVNVQTKIVLPEGADASKYSVKTSVWNPNGQKLTEQTMPLSQIKYNDNSLSQEFIIQTPTLWSPDMPALYSAETRLYEGDQLKDIYTTPFGIRSIEIIPNKGFFLNGEKTVFKGVCNHHDLGPLGAAVNDAAIRRQIRILKDMGCNAIRTSHNMPAPELVKACDEMGMMLMAESFDEWNKAKCANGYNLIFDEWVEKDLVNLVHHYRNNPSVVMWCVGNEVPNQWDESGCKISKFLQDICHREDPTRPVTQGMDAPDAVVNNNMAAVMDVAGFNYRPFRYQVNYKKLPQQIILGSETASTVSSRGVYKFPVERKAMAVYEDHQSSSYDVEHCNWSNLPEDDFIQHEDLPYCIGEFVWTGFDYLGEPTPYYTNWPSHSSLFGIIDLAGIPKDRYYLYRSHWNKSAKTLHILPHWTWPGREGEVTPVFVYTNYPSAELFINGKSQGKRTKDLSIGIDSSYTEAAQKSFERQKRYRLMWMDTKYEPGTLKVVAYDKEGNAVAEEEVHTAGKPHHIELSADRNQLTADGKDLSFINVRVVDKNGNLCPDDTRQIQFKVRGAGAYRAAANGNSASLELFHLPEMKLFSGQLTAIVRTAEEPGTIYFEASAPGVKGATLELISK
>NC_009615.1|WP_011966648.1|2338068_2338902_+|PepSY-like-domain-containing-protein
MNTRLILFTCIAGLTLFFSGCSKNDDDHQGIIPLPPVENAFQEKYPDAKNPVFEIEGNYYVVDFNNGGSETTAWFTDQGIWMMEKIDISFAQLPAAVSTAFKQSFYSNWTVDDTYAINRLNMGIVYKIEAEQSNSEVDLYYSQYGNLIKAVDDEINNDAPIVIPKEVSNLMEITFANAELLDIQQNSLGYELDMIDNQIYKVAQLNKDYRWQSTTWAMSEQEVPQIVMQGFESSAYASDKVQSIYTLLNANGTFYLFKVSHNGQDKTITFDVFGNIV
>NC_009615.1|WP_011966645.1|2336045_2336774_+|hypothetical-protein
MKKTVTFVWSIFLLVFISIDMNAQSIKSWDYPIKPGTEAWQALSTHEDMLKACQIPAEILKTVSTEELIELCLAYPLLGDIFAYNGIQEGISKVSARFNGLQELFKRKDNASLLFEKIKKQELLKAGVLTSIEIGNEISRQMVIEALLSNETILSNTNNLLQQEISSEAVKRLLYKQNNPDIYGQYGLKTVVYLLGRSLERIDNKTITPKFKQFTIDEKLTGSNVIEELLKQYIVTFNKLRS
>NC_009615.1|WP_005864731.1|2348844_2349372_+|O-acetyl-ADP-ribose-deacetylase
MNERIIAIQADITTLDVDAIVNAANNSLLGGGGVDGAIHWAAGPELLDECRTLQGCPTGEAKITKGYRLKARHVIHTVGPIYRNGQHGEPELLENCYRNSLRLAKENRLRTIAFPSISTGVYGYPIEEAAQIAIRTIDTFLKENPEIQQVTMCCFSGYDKSVYTKALEQITTHEP
>NC_009615.1|WP_008773450.1|2349352_2350012_-|hypothetical-protein
MKMKTVFNVMLLLVVIVSATAFSSCKEKRGELKKIWYNGSYNRDFNDLNDVHLSVAKKIGIEPVSSREGAEHASRDMVEIKTNDYYEVEELTHSIPYLVPEAANLLEDIGKNFQDSLKNLNASIYKIKVTSVTRTVADVKKLRKRNTNSSLNSAHQYGTTFDVSWVRYTKIDEKDTLNIDKDRLKMVLASVLRDLRRADRCYIKHERKQGCFHITAREL
>NC_009615.1|WP_005854625.1|2350238_2351231_+|PhoH-family-protein
MIERIYILESVDPVIFYGVNNSNMQLIKTLFPKLRIVARGNVMKVIGDEDESELFLKKIREVEKYCEEFNSLSEDVILDIIKGKGPTVVKQENLIIHGMNGKPITARTENQQLLVKAFENNDLVFATGPAGSGKTFVAIALAVKALKNKEVRKIILSRPAVEAGEKLGFLPGEMKDKLDPYLQPLYDALQDMIPAAKLKEYMENNVIQIAPLAFMRGRTLNDAVIILDEAQNTTTHQIKMFLTRLGMNAKMIVTGDVTQIDLPPSTTSGLIQAMQILKGVNGIGKIEFTKKDIVRHKLVQRIVEAYDKFDDKRKKEIKEAKEKKTNIDNN
>NC_009615.1|WP_005864727.1|2351242_2352193_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MKKALVKTDFNFPRQKSVYHGKVRDVYNINDEVLVMVATDRISAFDVILPEGIPYKGQMLNQIAAKFLDATTDICPNWKMATPDPMVTVGVQCQGFPVEMIVRGYLCGSAWRAYKSGVREICGVKLPEGMRENQRFPEPIITPTTKAEIGEHDQDISKEEILAKGLVSKEDYEVLEKYTMALFKRGTEIAKERGLILVDTKYEFGHRDGKIYLIDEIHTPDSSRYFYSEGYEDRFAKGEPQKQLSKEFVREWLMENGFQGKSGQKVPEMTPEIVEGISNRYIELFEHITGETFVKGETDNLLNRIEKNVTEYLQNK
>NC_009615.1|WP_005864725.1|2352203_2352947_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MTQYGSETILPYNKEEQKGTQVKRMFDSIAETYDQLNHTLSFGIDKIWRRKGIAFLRPFSPKTILDIATGTGDLAISMYKKLRPDHIVGADISLGMMEVGRKKVAAAGYSEHISFEQQDCTALTYEENSFDAVTAAFGVRNFENIEQGISEMYRVLKPGGHIMILELSTPEHFPMRQLYQIYSKTVIPFIGRLLSKEKVAYNYLPASIKVVPQGKVMTDLLTRQGFKQARVRTFTFGICSLYTGSKE
>NC_009615.1|WP_005854619.1|2352961_2353705_+|shikimate-dehydrogenase
MQKYGLLGYPLGHSFSKTYFNQKFEAEKIDAEYLNFEIPSIKEIKNVIKENPELNGLNVTIPYKEQVIPYLDDLDDDARQIGAVNVIKFTKGLFGKLKLKGYNSDIIGFKQSIDPLLKETHRKALILGTGGASKAVFHGLKQLGVGATLVSRKPKEFCITYDEITPKTMEQYTVIVNTTPLGMFPNIDSCPDIPYDLLTPNHLLYDLLYNPDETLFMKKGKEKGAVVKNGLEMLLLQAFAAWEIWQK
>NC_009615.1|WP_005854617.1|2353814_2354432_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MALLYKQLSPLHGVWKMEESSDELLGMLEHKADYSSFLERVSAEKRRQERFASRVLLKELLGEEARVDYHSTGAPFLACVPLYISISHTKDYVAVILDKRPTGIDIEYRSDRILKIRSRFMNPEEEAGIDLEHEVEHLLIHWCAKETLFKIIGQEGVDFQKHLHVNPFPYLSSGTFKGRETRTEACREYELAYQVTPDYVLTWLK
>NC_009615.1|WP_005854615.1|2354433_2355015_-|hypothetical-protein
MKWIAAVIGGSLFLGICCISCVEYTPKPRGYVRIEPSKAQYKPLDLSYLPFNFDVSQTAVIEVPDQKKGVTGLNISYPELEAKLYCSYLPITPASLVTVETESRSFVARLIKSENRISEKAYSNPAANVYGSLFLLDGESASPIQFLLTDSVSNFFRGALYFDCKPNADSLAPAIQYIREDIIELIQTFSWKE
>NC_009615.1|WP_005854613.1|2355021_2356374_-|gliding-motility-associated-protein-GldE
MDSDYYLWGLFENVTVQALTAGPVIALSLAFLLLFVSGFVSASEVAFFSLTPGDLNEIGEENRPADPVIKRLLERSEYLLASILIANNFVNVAVVMLCTYAINAWINFSAAPLLGFVLETILLTFLLLLFGEIMPKIYAQKNSLRFVRFSASVLSGLERFCRPFSKILVNSTSVINKALAKKKYDISVDELSKALELTSTEIPEEKEMLAEIIKFYNKTADEIMTPRLDMEDIEIKISFREVVDFIIKSGYSRIPVYSETEDNIKGILYIKDLLPYIDKPDTFRWQSLIRPAYFVPETKKIDDLLEEFRTNKIHMAIVVDEFGGTSGIVTMEDILEEIVGEISDEYDEDEQQFIRLADGSLIFEAKILLTDFFRVIDADPSDFGKLTEEVETLAGLLLEIKGDFPRRREIIDFKEYRFQVLEVDNRRILKVKFNRILEDTGNDENGKDTK
>NC_009615.1|WP_005854611.1|2356399_2356909_-|single-stranded-DNA-binding-protein
MSLNKVILIGNVGKDPDVRYFDSGAAVANFPLATSERGYTLANGTVVPERTEWHNIVVRRDLVPFVEKWVRKGSGVYVEGKIRTRNYDDQSGVKRYVTEIHADRIEFYSTGSRPADGGNTTAQGGSMQPNVGQGQPAQPTTAPNTAYQQPAASQPSAFSESSDADDLPF

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	FR714877	Flavobacterium phage FL-1 DNA for ORF1 and ORF2	600-632	7	0.788
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	KY421186	Flavobacterium phage FL-1, complete genome	49789-49821	7	0.788
NC_009615_1	1.1|1380450|34|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380450-1380483	34	NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	85594-85627	9	0.735
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	139472-139504	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP019696	Shigella sonnei strain 75/02 plasmid pInv_75_02_1, complete sequence	71939-71971	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP053752	Shigella sonnei strain 506 plasmid pMHMC-001, complete sequence	7429-7461	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP010830	Shigella sonnei strain FORC_011 plasmid pFORC11.1, complete sequence	71943-71975	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP046285	Shigella sonnei strain FDAARGOS_715 plasmid unnamed1, complete sequence	45606-45638	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP000039	Shigella sonnei Ss046 plasmid pSS_046, complete sequence	197807-197839	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	HE616529	Shigella sonnei 53G plasmid A, complete genome	199185-199217	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	CP023646	Shigella sonnei strain CFSAN030807 plasmid pCFSAN030807_1, complete sequence	32022-32054	9	0.727
NC_009615_1	1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT	1380516-1380548	33	MN694164	Marine virus AFVG_250M1189, complete genome	50878-50910	9	0.727

1. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to FR714877 (Flavobacterium phage FL-1 DNA for ORF1 and ORF2) position: , mismatch: 7, identity: 0.788

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ttttcatgatattagtttttaagattattgtta	Protospacer
** .****************** .*****  * 

2. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 7, identity: 0.788

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ttttcatgatattagtttttaagattattgtta	Protospacer
** .****************** .*****  * 

3. spacer 1.1|1380450|34|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to NC_015693 (Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence) position: , mismatch: 9, identity: 0.735

caatgtcttcggggtatattccttgccttgatag----	CRISPR spacer
caatgtcttcggggtatttttct----ttgacgcgttc	Protospacer
***************** **.**    ****..     

4. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
tcttaattatattagtttttaatgatattctgt	Protospacer
*. . ** **************** ****.  *

5. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP019696 (Shigella sonnei strain 75/02 plasmid pInv_75_02_1, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

6. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP053752 (Shigella sonnei strain 506 plasmid pMHMC-001, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

7. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP010830 (Shigella sonnei strain FORC_011 plasmid pFORC11.1, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

8. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP046285 (Shigella sonnei strain FDAARGOS_715 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

9. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP000039 (Shigella sonnei Ss046 plasmid pSS_046, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

10. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to HE616529 (Shigella sonnei 53G plasmid A, complete genome) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

11. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to CP023646 (Shigella sonnei strain CFSAN030807 plasmid pCFSAN030807_1, complete sequence) position: , mismatch: 9, identity: 0.727

ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
ccggtctaataatagtgtttaatgttatttata	Protospacer
..* . *.*** **** *************** 

12. spacer 1.2|1380516|33|NC_009615|PILER-CR,CRISPRCasFinder,CRT matches to MN694164 (Marine virus AFVG_250M1189, complete genome) position: , mismatch: 9, identity: 0.727

-------ttgccatgatattagtttttaatgttatttatt	CRISPR spacer
aaaaatctt-------tattattttttaatgttctttatt	Protospacer
       **       ***** *********** ******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	767617 : 776662	8	Synechococcus_phage(42.86%)	NA	NA
DBSCAN-SWA_2	999093 : 1006646	9	uncultured_Mediterranean_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_009615|767617:776662|DBSCAN-SWA
GATGAAAAAGTACGACGCGATTATTATTGGTTTTGGGAAAGGTGGAAAAACCTTGGCGGCGGATTTGGCCAACCATGGATGGAATGTAGCTGTGGTGGAGCGTTCGACGGGTATGTACGGAGGTACTTGTATCAATATCGGCTGTATACCGACGAAAGCGCTTGTACATAACGCTCAAGTGACAGGGTATCGCAGACCTTCTACCTTCGAGCAATATGCGGAGGAGTTTAAGCAGGCGATCCTCGCCAAGGAGAAACTGACCTCTTTGCTTCGTGAGAAGAATTTCAAGAATCTGGATGATCGGGAGACCGTAACGGTCTATACCGGAGAGGCTTCTTTTCGTTCCCCTTATGAGATTGTCGTGAAAACGGATACGGACTCTTTCTTGCTGGAAGGCGAGAAGATATTCATCAATACCGGAGCCACGACGATTATTCCTACGATAAGCGGTATCGAGGATAATCCTTACGTATATACAAGTACTTCCATTATGGAACTGGAGAAACTGCCACGGCATCTGGTTATTGTCGGAGGCGGATATATCGGGCTGGAATTCGCTTCCATGTTCGCCGGTTTTGGATCGAAGGTAACGATCTTGGAGGCTGGGGAGGTGTTCATTCCTCGTGAGGACCGGGACATCGCCGATTCGGTGAAGTCCACGCTAGAGAAAAAAGGGATCACCATTCATTTGAATACGGTCGTGCAGACTATCGAGCAGGATGCCGAGCGGGCTACGGTGATCTGCCGTAACGCTATCTCGGGAGATACCTTGCGGCTGGATGCCGAGGCGGTGCTTTTGGCTACCGGCCGTAAACCGAATACGGAAAGCCTAAATCTGCAAGCCGCCGGAATACGGACGACTAATCGTGGCGCTATCGAGGTGGATAGTAAGTTGCGTACCAATATCCCTAATATCTGGGCGATCGGGGATGTACATGGCGGATTACAATTTACCTATCTGTCTTTGGATGATTACCGTATTATCCGGGAAGAGCTGTTTGGTAATGGTTTCCGGAGCTTGGACGATCGGGAAGCAGTGGCTTATTCCGTATTCATCGATCCTCCGTTGGCCCATGTCGGGTTGAACGAGACGCAAGCCCGTAAGATGGAGAAAAATATAAAGGTGGCCAGCCTGCCCGCCGCCGCCATGCCTCGTACCCGTACCATCGAGCAGACGGATGGCTTACTGAAAGCCGTGGTAGATGCGGATACCGGGAAGATCCTAGGATGTACCTTATTCTGCGCCGAGTCCAGCGAAGTCATAAATACGGTTAGCTTGGCGATGCGTCTCGGGCAAGATTACACGTTCCTCCGGGATTCGATATTCACCCATCCGTCGATGAGTGAGGCTTTAAATGATCTATTTGGATTAATAAAATAAAAACATAAATATGAAAACATCAAATATTGGATTAATCGGCTTGGCCGTGATGGGCGAGAACCTTGCGTTGAACATGGAAAGCAAGGGGTTCACCGTATCCGTTTATAATCGTACAGCGCCGGGAGAGGAAGGCGTGGTAGACCGCTTCATGAGCGGTCGTGGAAAAGGAAAGAATTTTATAGGAACCCATACGATACAGGAATTTGTCGAGTCTATCGAGCGTCCTCGCAAGATCATGCTGATGGTAAAAGCGGGTGCCCCGGTGGATGAGCTGATGGCTCAATTGATTCCTTACTTATCACCCGGTGACGTGATTATCGATGGTGGCAACTCGGACTTCCATGATACGGAACGACGGGTGAAGGAGATGGAGGCGCATGGGATGTACTTCGTAGGTACCGGAATCTCCGGAGGGGAGATCGGTGCCTTGTACGGACCTTCCGTGATGCCGGGTGGCTCGCCTGCCGCTTGGCCTTTGGTGAAGGATGTCTTGCAAAGCATCGCCGCCAAGCTGGACGACGGGACGCCTTGTTGCCAATGGATTGGTCCGGGTGGAGCCGGCCATTTCGTGAAAATGGTACACAATGGTATCGAGTATGGAGATATGCAGTTGATTTCCGAGGCGTATTCTTTATTGAAGAATCGTCTGGATCTGGACAATGAGGCCTTGGCTCGTATTTTTGAGGATTGGAACACGGGAGAGCTGGATAGCTACCTGATCGGTATTACGGCCGATATTCTCTGCTTCAAGGACGAGGCGGGAGAGGGCTATCTGCTAGATAAGATATTGGATGCCGCCGGCCAGAAGGGCACCGGTAAATGGAGCGCTATCGCCGCTATGGACGAGAATGATCCGCTGACATTGATTACCGAGGCTGTTTATGCCCGTATGCTTTCTTCCATGCAGGAAGAACGGAAAAAAGCGTCCTCGCTTTATCCGAAGAGTGGCGCGTTGGGGCAGACCTTGATCTCGGAGAAAGAGATCAAGCAGGCTTTGTATGCTGCTAAGTTGGTTTCCTACGCACAGGGATTCTCTTTGTTGTGCCAAGCCTCCAAGCGATATGATTGGCAGTTGGATTACGGTACGATCGCCAAGATCTGGCGGAAGGGATGTATCATACGCTCTGTCTTTTTGGAGAAAATTACGCAGGCTTATGAGAAGAACCGGAATCTGGAGAACCTCTTATTCGATGAGTTCTTTATTCAAAAGATCGAGTCTTCCTTGTTGGCTTGGCGGCAAGTGGTAGCCGAGGGTGCCTTGCATGGAGTGGCTTTGCCGGCAATGAGCTCGGGGTTGAGCTATTTCGATGGATTGTCTACCCCACATTCTGCCGCTAACCTGATTCAAGCTCAGCGGGATTATTTCGGGGCTCATACCTATGAGCGGGTCGATTGGGAGCGTGGTAAGTTTTTCCATACCAACTGGACGGGCGAGGGAGGAAAGACGGTTTCTGGAACTTATAACGTATAAAGGTATGAAGAAAGCAGATAATCAATTATTAGTTATATTCGGGGCGTCGGGCGATCTTACCAGTCGCAAGTTGCTTCCCTCTTTGTTCGAGTTATATGTCCGGGGCTTGCTGCCCGACCGCTTCTGCATCTTGGGGGCCGCCCGTACCGCTTATGGTGATGAGGAGTTCTGTGCGGAGCAACATACGCATATCTTGGAGGCACAGAAGGGAAAGACTTACGACGAGGGCTTGATCGATGACTTCTTGGAGAATGTCTATTACCTCGCCTTCGATTCCACGAACGCCGATGAATACTACAAATTGCGTGAGCGCATCGAGTTCTTGCAAGAGAAACATGACTTGCCGGATAAGATCATCTATTACTTGGCTACCCCGCCGGTGATGTACGAGATCGTCCCGCAATGTTTGCTGGAGAGCGGTTTGAACAAGACCGAGTCTCCAGATGGTTTCAGGCGGATCATCGTAGAGAAGCCGTTCGGTACCAGCTTGGAGTCTGCCCGCCAGTTGAACGATCATTTACGACATATCTTCCATGAGGAGGAGATTTATCGTATCGACCATTATCTGGGGAAAGAGACCGTGCAGAATATCTTGGTATTGCGCTTCTCGAACGGTATTTTCGAGCCATTGTGGAATCATAATTATATCGATTCCATCGAGATCAGCGCTACCGAGACTTTGGGGGTGGAGAATCGAGGGAAATATTATGATGGAGCCGGGGCGATGCGGGATATGATCCAGAATCACTTGATGCAATTGATGTCGTTTATCGCCATGGAATCTCCCTCTATATTCGAGCCGGAACCGATTCGTGACGAGATCGTGAAAGTATTCCGCTCCATACGTCCGTATACGGTGTTGGATATGGATAAGATGGTTGTCCGCGGACAATATATCGGTTATCGGGAAGAGAAGAACGTAGCTCCCGACTCGAATACCGAGACGTATGTGGCGATGAAATTCTTCATCGATAACTGGCGCTGGAGCGGTGTGCCCTTCTATTTCTATACGGGAAAGAAGTTGCCGGAGAAGTCATCGGAGGTAGTGATCCACTTCAAGTCTACGCCCCATCAACTGTTTGTCGGTCAATGTTCGGGAGGTTCCTGCAATAAATTGACCATCCGTATCCAACCGAACGAGAGTATATCCTTGAAGTTCGGGCTGAAAATGCCGGGAGCCGGTTTCGAGGTGAAGCAAGTCAGCATGGACTTCCGCTACGATTCCCTCTCGAAGAGCTATCTTCCTGACGCTTACGAGCGTCTGTTGCTGGATGCCATGCTGGGCGATTCCACCCTGTATGCTCGTAGCGACGCTTTGGAGGCTAGCTGGAAATTTATCGATCCGATCTTGCTCCATTGGAAAGAGGAGGGTTCGAAGAACTTATTCTTCTATGAGCCGGGCGAGGACGGACCGGAGGAAACTGTTATTTTAGGTGCGGAAAAGAAAGTCTGCGCCTGCCAAAGAAGATAATTTTATGGAAATAAAGAGATATAATGAGATGAAAGAGGCGCTTCGGTCGATGACGGAGGATATGATGGCGATGATTCGCCGGAAAGACTTCGCTCCGTTTAACCTAGCGCTCTCGGGAGGAGAGACGGCGAAGCATATGTTTTCCCTCTGGGTAGATGAGTATAAGGATAAGATTGACTGGAATAACATCCGTTTCTTCTGGGTGGACGAGCGTTGCGTTCCACCGACAAGCCCGGATAGTAATTACGGTCATGCGAATCGTTTGCTTTTTACGCCTTTGCGTATCCAGGCAGACCATATTCACCGGATCAAGGGCGAGAACGAGCCGGGTACCGAGGCGATGCGTTATTCATGGGTCGTAAAGGAATTCTTGCCGTTGTTCAATCAAATGCCTACGTTCGATTGCATCATCCTCGGCGTAGGTGAGGATTCCCATACGGCATCCATTTTCCCTACCACCATGGAGCTATTGTCGGATAGCCGTAACTATGCGGTATCCCAGCAACCTTCTACCGGCCAATACCGGATCACCATGACGGGACCGCTTATCTTGAACGGCGCCCCCTTATTGGTCCCGATACTGGGCACGAACAAGGAACCCGTAGTCCAGAGGCTCTCCAAAGGCTATTCCCCCTCAAACGATACGCCTGCGGCCTATATCTTATCGCATGCCGTACAGGCTACGATTTATGGGCTGAACCCATGATTTTGCTACATGCCGAGTCCTTCCCAAAAACATGTACGTGTTTTCGAAAAAACACGTACATATACTCCTCTCCTTGGAGAAGATATACTGCAAGTACCCTAGGAGATATACTTCACCGTCCAAGTAAGTACTACTTCTCGTGATATCCTATTAGTATATACAAGACTGTTGCCCACATTTAAAGTGAATGTATTTGTTGGATTCATGTTTTTTTGCGAAGTTTGTTGCTTGAAAAGTAAGCTTTGAGACATGAATACGAGAAATATTGTACTGTGTATATTATATTTGTTTTTGGTGCCGATGGGAGGGTTTGCCCAATCTGAGGTCGTTGTCTTGTATCCCGATACTGAAAATAAGGATTTGGATGAAGCAGTATACCAAAAAATCTTTTTGGCCGGCACGATCGATATGGGGAAAAGTGTGGATTGGCAGAAGGCTACCTGCGACTGGTTCCGAGCGCTTCCGGAGGGACGGTATCTCTTGTTCAATCCTCGTAGGGATAAAGGGTTGAGCGGGGAGATGTCCGATTTTGAGCATCAAGTGAATTGGGAACTGGAGCATCTGGAGAAAGCCGATCTGATTATCATGAACATTCTGGCGAGCAGCAAATCCCCGATAACTTTATTGGAGATGGGGCTGTTTATGCGCTCCGGAAAGTTGCGGGTGATTTGCGAGCCCGGCTTTTACCGGTATGATAATGTGCGCTTAACTTGTGCGCGCTATGGCGTCCCATTGTATCAGAATATGGACGATTTTTTGAAAACCATGCGCTAATCTATTATTATTTGTTTAACTTTGTATAGTTTTAGGGACGGTGTGGAATCGATCCTAAGCGAGTATTGTCGAACAAAATGGAAAGAATATGAAAGGTATAGTTTTAGCCGGTGGATCGGGTACCCGCTTGTATCCGATCACTAAAGGAGTTTCCAAGCAACTTCTACCTATTTATGATAAGCCGATGATTTTTTATCCGGTATCCGTGCTCATGTTGGCGGGGATACGGGAGATTCTTATTATATCGACCCCTCAGGATTTGCCGGGCTTTCGTCGTTTACTGGGCGATGGCTCCGATTATGGCGTTCGTTTTGAATATGCCGAGCAGCCTTCGCCGGACGGATTGGCGCAAGCTTTCATCATTGGAGAGCGCTTTATCGGCGATGACTCCGTTTGCTTGGTACTTGGCGATAATATCTTTTACGGACAGAGCTTTACCCGTATGTTAAAAGAGGCCGTTGACAAGGCGGAGAACGAACAAAAAGCGACCGTGTTCGGTTACTACGTAAACGATCCGGAACGCTATGGCGTGGCCGAGTTCGATGCGGATGGGAACGTCCTCAGTATCGAGGAAAAACCGAAGGAACCGAAGTCGAATTACGCCGTGGTAGGATTGTATTTCTATCCGAACAAGGTGGTGGGCGTGGCCAAGAATATCAAGCCATCCGCCCGTGGAGAGCTGGAGATCACTACCGTGAACCAGTGGTTCTTGAAGGATGGGGAGTTGAAAGTGCAGCTATTGGGACGTGGATTCGCTTGGTTGGATACCGGGACTCACGACTCGTTGTCTGAGGCATCTACTTTCGTGGAGGTGATCGAGAAGAGACAGGGACTGAAGGTGGCTTGTCTGGAGGAGATCGCTTTCAAGCAAGGATGGATTGATGAGAAGCGACTTGAGCAAGTGGCTTTGCCGATGATTAAGAATCAGTACGGCCAGTATTTGATGAGGTTGATTAATAAGTAGAAGTAGTTCAGAATACGAGATATCGATGGAAAAAGACAGTAAAATATTTGTTGCCGGTCACCGGGGCTTGGTAGGCTCCGCCATTCTGAATAATTTGCGAAGCAAAGGGTATACGAACTTCCTGCTTCGTACGCATGCGGAACTGGATCTGACGGATCAAGCCGCTGTGAACGAGTTTTTTGCCGCTGAACGGCCGGACTATGTGTTCTTGTCGGCGGCGCACGTCGGCGGTATCATGGCGAACAGTCTGTACCGTGCCGATTTTATCTACAATAATTTGATGATCCAGAATAATGTCATTCATGCCTCTTGGAAAAACGATGTAAAGAAATTATTATTCTTGGGAAGCACCTGCATCTATCCCCGTGAGGCTCCGCAGCCGATGCCGGAGGATTGCTTGCTGACATCTCCCTTGGAATATTCCAATGAGCCTTATGCGATCGCCAAGATAGCGGGTATCAAGATGTGCGAGAGTTACAACCTGCAATACGGTACGAACTATATCGCCGTGATGCCTACTAACCTCTACGGGCCGAATGATAATTTCAATCTGGAGACCTCGCATGTGTTGCCAGCCATGATCCGTAAGATCCATCTGGCGAAATGCCTGCATACAGGAGATTGGGAGGCCTTGCGTAAGGATATGGACATTCGTCCGGTAGAGGGCGTGTCTGGGAAGGCCTCCGAGCCGGAGATACTCTCCGTATTGGATAAACAGGGTATCCGTCCGGGCGAGGTGGAGCTGTGGGGAACCGGCAAGCCGCTTCGTGAGTTTTTATGGAGCGAGGAGATGGCCGACGCTTCTGTTTATATCATGGAACACGTGGATTTCGAGGATGTCCGCCAGAAGGAGGGCGAGGTCCGGAATACACATATTAATATAGGTACGGGTATCGAGCTTTCGATCCGTGAGGTCGCCGAACTGATCCGGCGAGAGATCGGGTTCGAGGGCGAGTTGAGGTTTAACTCGTCCAAGCCGGACGGTACGCTTCGTAAGCTGACGGATGTAAGCAAGTTGCATGCCTTGGGTTGGCGCCATACGATCGAGATCGAGGAGGGCGTGAAGCGACTCTATGAATGGTACTTGGGAATTGAAAAATGAGAATTGAAAATTGAAAATTAGAGAAATGGGCAAAGTAGCGTTAATAACGGGTATTACGGGACAGGATGGGGCTTATCTTACCGAGTTCTTGATCAAGAAAGGATATACGGTACACGGTATCAAGCGTCGTTCTTCCATGTTCAATACGGACCGTATCGATCATTTGTATCAAGACCCGCATGTGGAAAACCGTAATTTGATTTTGCATTATGGCGATTTAACGGATAGTTTGAATCTTACACGTATCATTGGCGAGGTTCAACCGGACGAGATCTATAATCTGGCCGCCATGAGCCATGTAAAAGTAAGTTTCGACACTCCCGAATATACTGCGAATGCGGATGGTTTGGGCGTATTGCGTATCCTAGAGGCGGTCCGTTTGCTGAACTTGATCCCGAAGACGCGTATTTACCAGGCATCTACATCCGAGTTGTATGGCTTGGTGCAAGAGGTGCCGCAGAGGGAGACTACTCCTTTCTATCCGAGAAGCCCTTATGCGGTAGCGAAACTATACGGTTACTGGATTACGGTGAATTACAGGGAGGCCTATCATATGCACGCTTCCAATGGCATCTTGTTTAATCACGAGTCTCCATTAAGGGGAGAGACATTCGTGACCCGTAAGGTAACCCGGGCGGTTTCACGTATCGTTTTGGGTATGCAAAAAAAGGTTTATATGGGTAATCTTTCCTCCAAACGGGATTGGGGACACGCAAAAGATTACGTGCGTGCCATGTACGCTATTTTGCAACAAGATGAACCCTCGGATTATGTCATAGCTACCGGGATTACTACCACGATTCGGGACTTTATCCGTATGGCTTTTGAGGAAATTGGCGTGGGAATCCGCTTTAAAGGAGAAGGGATAGACGAGGTCGCTATCATAGAGTCGATAGACGAGGGATTGTTCGTCAAGAAGGTTGGTGATGCCTATCTGGAAAACTTTAAGAAACGTGTGGGTGAGGAAGTTGTGGGAGTAGATCCGCAGTATTTCCGCCCTACGGAAGTAGAGTTGCTGATCGGTGACGCTACGAAGGCACGTACTCGTTTAGGGTGGGAACCGGAGTATTCATTAGCGGCTTTAATTGAGGATATGATGAAGAACGATATAAAACTAATGAAGAAGGAGTCTTATCTGAAAGAGGGGGGCTATAAAATTTTGAACTATTTCGAGTGA

Protein sequences of DBSCAN-SWA_1

>NC_009615|767617:776662|770472_771939_+|WP_011966109.1|DBSCAN-SWA
MKKADNQLLVIFGASGDLTSRKLLPSLFELYVRGLLPDRFCILGAARTAYGDEEFCAEQHTHILEAQKGKTYDEGLIDDFLENVYYLAFDSTNADEYYKLRERIEFLQEKHDLPDKIIYYLATPPVMYEIVPQCLLESGLNKTESPDGFRRIIVEKPFGTSLESARQLNDHLRHIFHEEEIYRIDHYLGKETVQNILVLRFSNGIFEPLWNHNYIDSIEISATETLGVENRGKYYDGAGAMRDMIQNHLMQLMSFIAMESPSIFEPEPIRDEIVKVFRSIRPYTVLDMDKMVVRGQYIGYREEKNVAPDSNTETYVAMKFFIDNWRWSGVPFYFYTGKKLPEKSSEVVIHFKSTPHQLFVGQCSGGSCNKLTIRIQPNESISLKFGLKMPGAGFEVKQVSMDFRYDSLSKSYLPDAYERLLLDAMLGDSTLYARSDALEASWKFIDPILLHWKEEGSKNLFFYEPGEDGPEETVILGAEKKVCACQRR
>NC_009615|767617:776662|773507_774383_+|WP_008772418.1|DBSCAN-SWA
MKGIVLAGGSGTRLYPITKGVSKQLLPIYDKPMIFYPVSVLMLAGIREILIISTPQDLPGFRRLLGDGSDYGVRFEYAEQPSPDGLAQAFIIGERFIGDDSVCLVLGDNIFYGQSFTRMLKEAVDKAENEQKATVFGYYVNDPERYGVAEFDADGNVLSIEEKPKEPKSNYAVVGLYFYPNKVVGVAKNIKPSARGELEITTVNQWFLKDGELKVQLLGRGFAWLDTGTHDSLSEASTFVEVIEKRQGLKVACLEEIAFKQGWIDEKRLEQVALPMIKNQYGQYLMRLINK
>NC_009615|767617:776662|767617_768997_+|WP_011966107.1|DBSCAN-SWA
MKKYDAIIIGFGKGGKTLAADLANHGWNVAVVERSTGMYGGTCINIGCIPTKALVHNAQVTGYRRPSTFEQYAEEFKQAILAKEKLTSLLREKNFKNLDDRETVTVYTGEASFRSPYEIVVKTDTDSFLLEGEKIFINTGATTIIPTISGIEDNPYVYTSTSIMELEKLPRHLVIVGGGYIGLEFASMFAGFGSKVTILEAGEVFIPREDRDIADSVKSTLEKKGITIHLNTVVQTIEQDAERATVICRNAISGDTLRLDAEAVLLATGRKPNTESLNLQAAGIRTTNRGAIEVDSKLRTNIPNIWAIGDVHGGLQFTYLSLDDYRIIREELFGNGFRSLDDREAVAYSVFIDPPLAHVGLNETQARKMEKNIKVASLPAAAMPRTRTIEQTDGLLKAVVDADTGKILGCTLFCAESSEVINTVSLAMRLGQDYTFLRDSIFTHPSMSEALNDLFGLIK
>NC_009615|767617:776662|772894_773419_+|WP_005863002.1|DBSCAN-SWA
MNTRNIVLCILYLFLVPMGGFAQSEVVVLYPDTENKDLDEAVYQKIFLAGTIDMGKSVDWQKATCDWFRALPEGRYLLFNPRRDKGLSGEMSDFEHQVNWELEHLEKADLIIMNILASSKSPITLLEMGLFMRSGKLRVICEPGFYRYDNVRLTCARYGVPLYQNMDDFLKTMR
>NC_009615|767617:776662|775510_776662_+|WP_005857703.1|DBSCAN-SWA
MGKVALITGITGQDGAYLTEFLIKKGYTVHGIKRRSSMFNTDRIDHLYQDPHVENRNLILHYGDLTDSLNLTRIIGEVQPDEIYNLAAMSHVKVSFDTPEYTANADGLGVLRILEAVRLLNLIPKTRIYQASTSELYGLVQEVPQRETTPFYPRSPYAVAKLYGYWITVNYREAYHMHASNGILFNHESPLRGETFVTRKVTRAVSRIVLGMQKKVYMGNLSSKRDWGHAKDYVRAMYAILQQDEPSDYVIATGITTTIRDFIRMAFEEIGVGIRFKGEGIDEVAIIESIDEGLFVKKVGDAYLENFKKRVGEEVVGVDPQYFRPTEVELLIGDATKARTRLGWEPEYSLAALIEDMMKNDIKLMKKESYLKEGGYKILNYFE
>NC_009615|767617:776662|769007_770468_+|WP_011966108.1|DBSCAN-SWA
MKTSNIGLIGLAVMGENLALNMESKGFTVSVYNRTAPGEEGVVDRFMSGRGKGKNFIGTHTIQEFVESIERPRKIMLMVKAGAPVDELMAQLIPYLSPGDVIIDGGNSDFHDTERRVKEMEAHGMYFVGTGISGGEIGALYGPSVMPGGSPAAWPLVKDVLQSIAAKLDDGTPCCQWIGPGGAGHFVKMVHNGIEYGDMQLISEAYSLLKNRLDLDNEALARIFEDWNTGELDSYLIGITADILCFKDEAGEGYLLDKILDAAGQKGTGKWSAIAAMDENDPLTLITEAVYARMLSSMQEERKKASSLYPKSGALGQTLISEKEIKQALYAAKLVSYAQGFSLLCQASKRYDWQLDYGTIAKIWRKGCIIRSVFLEKITQAYEKNRNLENLLFDEFFIQKIESSLLAWRQVVAEGALHGVALPAMSSGLSYFDGLSTPHSAANLIQAQRDYFGAHTYERVDWERGKFFHTNWTGEGGKTVSGTYNV
>NC_009615|767617:776662|774408_775485_+|WP_011966111.1|DBSCAN-SWA
MEKDSKIFVAGHRGLVGSAILNNLRSKGYTNFLLRTHAELDLTDQAAVNEFFAAERPDYVFLSAAHVGGIMANSLYRADFIYNNLMIQNNVIHASWKNDVKKLLFLGSTCIYPREAPQPMPEDCLLTSPLEYSNEPYAIAKIAGIKMCESYNLQYGTNYIAVMPTNLYGPNDNFNLETSHVLPAMIRKIHLAKCLHTGDWEALRKDMDIRPVEGVSGKASEPEILSVLDKQGIRPGEVELWGTGKPLREFLWSEEMADASVYIMEHVDFEDVRQKEGEVRNTHINIGTGIELSIREVAELIRREIGFEGELRFNSSKPDGTLRKLTDVSKLHALGWRHTIEIEEGVKRLYEWYLGIEK
>NC_009615|767617:776662|771943_772645_+|WP_011966110.1|DBSCAN-SWA
MEIKRYNEMKEALRSMTEDMMAMIRRKDFAPFNLALSGGETAKHMFSLWVDEYKDKIDWNNIRFFWVDERCVPPTSPDSNYGHANRLLFTPLRIQADHIHRIKGENEPGTEAMRYSWVVKEFLPLFNQMPTFDCIILGVGEDSHTASIFPTTMELLSDSRNYAVSQQPSTGQYRITMTGPLILNGAPLLVPILGTNKEPVVQRLSKGYSPSNDTPAAYILSHAVQATIYGLNP

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011966107.1|767617_768997_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.8e-106	45.8
WP_011966108.1|769007_770468_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.3e-38	27.4
WP_011966109.1|770472_771939_+	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	6.8e-88	41.4
WP_011966110.1|771943_772645_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_005863002.1|772894_773419_+	nucleoside 2-deoxyribosyltransferase domain-containing protein	K4JW05	Caulobacter_phage	1.7e-17	37.6
WP_008772418.1|773507_774383_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.6e-108	65.6
WP_011966111.1|774408_775485_+	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	6.3e-83	47.0
WP_005857703.1|775510_776662_+	GDP-mannose 4,6-dehydratase	A0A0E3F1J3	Synechococcus_phage	3.3e-122	62.3

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_009615|999093:1006646|DBSCAN-SWA
GATTATGTATTACATAAAACGAAAGACTAAAAAGAAAGATAAGCCTTTGTCCCTGTTTGATAAAGCAGGGGTGACAGTTAAGAAGAAGCCGGATCTGAAAGCGAAACTCGACAAGGAGTTTTCCCTTTTCATCCGGCTTCGTGATTGTATGCCGAACGGATATTTTAAATGTATCTCATGTGGACAGATTAAACCGTTTGAGCAGGCAGATAACGGGCATTACATAAATCGACAGCATATGAGTACCCGTTTCGATGAAATGAACTGTAACGCTCAATGTCGGCACTGTAACCGCTTCATGGAGGGTAATATTCAGAATTACCGCAAAGGATTGATTGCCAAGTATGGTGAACAGAGAGTTGTCCTACTCGAAGCAAAGCAGGGTATTAGCCGGAAGTTTACCGATTTTGAGTACGAGCAATTAATCAAGTATTACAAGGCGCTTAATAAGAAGCTTAAAAAGGAGAGAGGATTATGAGTTATGTATTGCGAGATTATCAACAGAAAGCCTCTGATGCAGCTGTTTCCTTCTTTAACAACAAGGCGAAGAAGACGAATGCTATCATGGTTCTTCCTACAGGATCAGGGAAGTCACTTATTATAGCCGACATTGCTGCAAGGCTTGACGGGCACACCTTAGTGTTTCAGCCCAGCAAGGAAATACTCGAGCAAAATTTCAAGAAGCTATGTTCTTATGGCATCTTAGATTGTTCGATATATTCAGCTTCTTTTGGAAGAAAAGAAATATCAAGGATCACATTCGCCACGATCGGTAGTGTAATAAATCATCCGGATTTGTTTTCTCATTTCCAGTCTATCATTATAGATGAGTGTCACTTGGTAAATCCTAAAGAAGGAATGTATAAGACATTCTTAGAACTTCTCAAATGCAAGGTTCTTGGTTTAACGGCAACGCCATATCGATTAAGTAGTTCGCAAGAGTTTGGTTCTATGCTGAAATTCATTACCCGAACACGTCCGGCTATATTCAAGGATGTAATCTATCATGTGCAGGTCTCGACCTTGCTTGATATGGGTTATCTTTCAAAGGTAAACTACTATTCTATGAATCCTACTGGATGGAATGAACTCAATTTGAAGATAAATACCACTGGTGCGGACTTCACAGATAAATCCGTTCAAAGGGAATATGAACGGATTGACTTTTATAGTTACATCGTTCATATCGTCCAAAGATTGATGAATCCGAAAGCAGGAGGTAAGAGGAATGGTATTTTAGTCTTTACCCGGTTCTTGAAAGAAGCAGAACGACTAACTTGGTCGATACCCGGTTGTGTTATTGTTTCCGGCGATACTCCAAAGAAAGAACGTGAAAGAATACTCGAAATGTTCAAGACCGGTGAAATACCTGTTGTTGCCAATGTTGGAGTACTCACCACCGGCTTTGACTACCCAGAGCTTGATACGGTTGTGATGGCCAGACCTACCATGTCGCTTGCGATGTATTACCAGATTGTAGGCCGTTGCATCCGTCCATACAAAGGAAAGACGGCATGGTTTGTTGATCTATGCGGTAATATCAATCGTTTTGGAAAAGTAGCTGATTTGTATTTGAAAGATTCCGGCAATGGTAAGTGGGCGGTATTTTCGAAAGGACGGCAATTGACAAACGTAAGATTTTAGTTTATGGATATACTAAGCATTATTGATTGTCTCCAGAAAAAAAGGCGATCTGAAAAGATAACACCGGATCATGTGCCGGAGGTAGAGTTGATGAATGCAATCCATACGGAAACAAGAAAAGAGTTGAATAATCTTTTTCTATCTGGTAAAATAGGGATTACAAAGACGTTAAATTCAAAGGCTATTTATATAAAGGAGTGATATGGATAAAGGATTCATAATGCTCTCACGTAAGTTTTTCTCTAATGAAATGTGGGAAGCAGCCCGGACTTTTAGCGAGTGCGAAGCGTGGCTCGATTTGATTCAGAGTGCACGATTTGATGCAACGCGGCTTACAGCCAGTATCGGAGGTAGAGAAATAACATACGGAAGAGGACAATATCCGGCATCTGTGCGCTTCCTGTCTAAACGTTGGAGGTGGGGAGAACAAAAAGTTAGGAGCTTTATTGAAAAGTTGATAAAAAAGGGAATGGTCACTACTGATAACTCACAGGGCATGACCGTTATAACATTAGTGAAATATGATGATTATAATATCAATAACACAGCAAATAACACACAAGATAACACATCTAACGTATTGGATTATAATAGAATAAAAGAGTTTGTAACACAGGTTGTAACACAGCAAATAACACAACTACAACACAGCGATAACACAAAGAAGAATAAAGAAAATAAAGAGAAAAATATAGGAGATTCTGACGAATCTCTTGTATGTGGGACTTCGCAGCCCCACACCGAACATATCGATTACTCCGAACTTGTCAAATTCTTCAATGAAGAAACAAAAGGTGTATTTGGTACGGTCAGGACTCCGCTTTCTGATAGCCGTAAAGGGATGATTAACGCACGTATAAAATCTTACGGCAAAAAGACGTTTGCCGACATGATTCGTAAGGCATACCAAAGCGATTTCCTGAAAGGGCAGAACAAAAAAGGCTGGACAGCATCTTTCGATTGGCTTATCAAACCAACGAATTTTGAGAAAGTAATATCAGGTAATTATGACAACAAGAATAGCAGAAACGATCCGGCAATTCCAAACAGGGCAAAATCACGAGAAGAACAAACAGACCGTGAAATCCTCGAATATGCCGCAAAAGCTTTCGGAAAAGGCATGGTTAGTAGTAAATAGGTACGGGGACGGTGAAAGTTTCGCTAAAAAGTTCAATCCTTCATTACAGGTTGTATGTGCTCAAAATGTGGAACGTTCGTTCAAAGGTAATGCGCCTTCATTGGCTTTGCTCGGAGAAACCTATCCGGATGAACAGGTGAATACTTGGATAATTGCTCAACTGATGGACTTGTACAAGTTTGCCGGTGTAAAGGAGAAGCCTACATTCCAACAGGTCTTGGAGCTTTCCGTGATGATACGTGTGGAATACTATTACTTGAAAGCTTCCGAATTGTTGCTTTTTTTCTTCAAGTTGAAAGCTGGCGAATATGGTACCTTTTACGGTGTTGTGGATCCTATGGTAATCATGTCTGCTTTAATAGAGTTCAAAGCATACAGAAAAAGGCAACTGGAGAAATACGACCGGGAAGAACAGGAAAGACAACGAGAAGAAAGATACGAGAAGCAAGGTAAGAACTCCGTCCCGTTTCCGGATCATTTGGAGTTTCTGAAAAAGATTATGGAATCAGAATAATCAAGCTAAAAAAATGAAAACAGTAGAAAAATTAAGAATAGTGCCTATTGGCACGATTGTAAGCGTTGCAGATCGGACACTGCGAATACAGCAAGGCTTGCATGGCCCATCTGAGGCCGGACCATGAAAGCGTAGTTTTTGCTAAAACGAGAGAGACATGACACATGGATCATTATTTTCTGGCGTGGGCGGTTTTGACCTTGCCGCCGAATGGATGGGATGGGAGAACCTGTTCCATTGCGAGATTAACGAGTGGTGCCAAAAGGTACTGAGGTTTCATTTCCCAAAAAGCATTCAATATGACGATATTACAAGAACTGATTTCACTCCGTGGAGAGGGAAGGTTGACGTACTCACAGGAGGGTTCCCTTGTCAGCCATTTTCAACGGCAGGAAAGCGAAGGGGAGCGGAAGATGACCGTTACCTCTGGCCGGAAATGCTTCGGGCAATACGGGAGATACGACCCGCTTGGGTCATTGGTGAGAACGTTGCTGGAATCACCAGCATGGTACAACCCGGCAGTGAGGTTACGGTGGAAAGTCAAGCCTCTTTGTTTGAAAAGGCTGACAAGGAAACAATACTCGAACAAGAGTACGTTATCGAAACCGTCTGCCGAGATCTTGAACGTGAGGGATATTCCGTCCAGCCGATTCTTATTCCAGCTTGCGGTGTCGGAGCGCCGCACAAGAGGGACAGGGTATGGTTTATTGCCCACTCCGAGGGCGATGGAGATCGTGGAGCATCCCATGAAGGCGGCGGAACGACTCAAGGATCGTACGGGAAAGAAATTGAACAATCTTTCATCGGGAGCGGCATTTGGACTACTTCCCACCCCAACTGCTCAAGAGGGCTTCAATTCGGGGAAAGGAGAGATATTCGTGACAAGGAACAATACGATCAGGATAAGGAACCAGAACGGCACGAGCAGCCGTCTAGGTTTGGAGGGAGCGGTGAAGCATATGTTATATCCGACACCGACAGCCCAAGATTTCAAGCGAAGGGGTCCGAACAGCAAACAACAGGGATTACCGGAGGCGGCCTACGAAAAGATGTTACCGACACCTACGGCGAGAAGCTACAAACATGGCTCAAAAATAACGGACGGGAGATCGAGGAGGAAAATATCGCAAGGCTGGACAATGGAGTTGAACGATCTTGCTGTATCAGGGCTTTTGCCGAATCCGACAAGAAGAGACGATGCCTTATGCAATATACCAGTAATGATTGGCCAGCATTGTCAGCAGAACTATGGAAAGACTTCCCAACTCAACCCCCTGTTTGTCGAAGAAATGATGGGTTACCCTTTGATGTGGACTACCTTGCCATTCCTTTCACAAAATGGAGACAAGAATCCATAAAAGCCTACGGAAACGCCATCGTCCCACAAGTAGCATTTGAGATATTCAAGGCGATAGAAACATCAACCTTTCATCATAGTTGAAAACTGCATTCATCTATGATGAGAGCAAAGAAAGAATATAAAATTATATGAGAACACCAATCACATATTATGGAGGCAAGCAAAACTTGTCCGAACGCATTGTATCAATGATGCCTAGGCATAAGATATATTGCGAGCCATTCTTTGGAGGAGGAGCGGTATTTTTTGCGAAGCCTAAAGCAGGGATAGAAGTGATCAATGACAAGAACGACTTGTTGATAAACTTTTTCAAGGTCTGCCAGTCCGCATCCAAATTTAAGGAGTTACGTGAGAGAATCCGATTATCGCTACACTCCGAGTCTGACTACATTAGGGCTAGGAACATTTATCGAGGACGATCTGAGGTCTCGGATGTAGACAAGGCTTGGGCCGTATGGATCATGGCAAATGAGTGCCATTCTGGTAGCTTGTATGGAGGATGGAAATTCTGTAACGGTACCGCCGGGACACACTTCGGGAAGGTTTTCAGGAATAAGCGTGAGGAGTTCAACGATAAATTGTACGATCGCCTATCAGAGGTGCAGATTTCCTGTAGGGACGCGTTGAAAGTTATCAAGAACAGGGATAGCGTTGATACGTTATTTTACCTTGATCCTCCTTATCCCGGGGCGGTTCAAGGTCATTATTATGGTTATGGGGAGAATGACCTTGCGGATCTGCTAGATCTTTTGTCTCGGATCAATGGTAAATTCATTCTCAGCAATTACTGGACTGACACCTTACGCTCCTTTGTCAATGAAAACAAATGGAACCATAAGGAAGTAAAAGTCACCACTCATACGGCCGTTCACTCTCGGATAAGGGAGAGTACGGAGGTTTTGGTTTACAATTACGAGATTGAGAAAACATTGTTTTGATATGAGAAATAAAGAACTAATCGCTCTTCTCCAAGAGCAAGACCCGGAAGCGGAGGTAATGATCCGCACGTCGGATAAGGAATATTACTACGATTTAGTGGACGTGTTCACGGATAAGGATGGGGATGTTATATTACAGGAGGGATAAGATGATGAGAATAAGCGATGAATAGTGCTGTATGAATTGTGCGCTCAGGAACGAGTGCCTACACGGTAAGAATTCGTACAACCTATTGGACTATTGTGATAGTTATATCGATGAAGATGACACAAACGATTCCTATACAAGGGAAGATTTGGAGGACTGGTAACCATGAACAAAGATATTGCACTATGCGGTAGTTATCCAAGCTAGGTAACCATCCCCTCCGAGAAAAGGTTTTAAATGTAAGGAATATTTTAACAATCAATGATTATATGAGTTGGGGAATGAACGTCAGGCAAACCAATGATAACGGAGAGAACACCGTTATTGAGGTCTGGTTCCATGATAATTTTATAGCCTTTCATTATCATGGATGGATAGACAAAAAGCAAAGGAAGATAGCGGAGAAATGTACACGTCACCGTTATATATGGGGTAAGTACTATGTCGCAATGGAGACAATACTACCCTTCTATGCGGTGAGAAAGTTTCTAATGACACCGAAATGCTGGGTTAACTTTATTAAGTGGTTTTATAGGGCTTGGAAATACAATAGGAGGATAAAGTATGTTGACTAAAAGTATGATTTCAGATGGTTTGCTGCAATACTACAATTGGCAAACCGATTACTGTCTTTTTACAAACACCGATTCCATGGATGACTTTTTAGAAAACGAATTGCCAGATGATTATGAAGTCATAGAACGAGATCGCAATCAATGTATAGTCGATATGGACGGAGATAAGTACGAGATAACCGCGTATGGAGATGGTGATTTTTCCCATCATGTAGCATCTATTTATAAATTAAGTTAGGAATAAAGATGAACACACAAATTTGCACGAATAAAAAACAATCATCACGCCTATTAGAGGCCGGGGTGAGACCGGATACGGCAGACATGTATTTGGATGAGTTTGAATTGCCGGTCGCATTTGAATATAGAAGGATTGAAGGGCACGTGGGTCAAGATATGGCATTCCCGGCTTGGTCTCTATCCAAGCTGATAGACATGATGCCTAAATCATACCAAGATGATATTGACGGGATGGTTTATTACCTATCCGGAAATTTCGTTGAGTTAATGTACGCATCGGACTGGATCAAGGACGGGGAAGGTGACAATACTTACAATTGCGCAAAATCCTTCGACAAAGAGAATCTGATGGACAATATGGTTGACGCTATCGAATGGCTTATCAGAGAAGGGCACTTGAATAAGAAATTCCTAACAGATAAATGCGGCGATTGCCGACTTATCGAGGATGAAGACACAAACGGAGAGGCTTGGTGCGCCTTCCATCAAAAACCGACAATGTGCGATAGTAGAGCTTGTAAGGATATTTTAAAGAAATGAGTACAAAATGAGAGAGATTAAATTCAGAGGGAAGTGTTTTGATAATGAATGGGTATTTGGAGATTTATTGCAGTCGAACATAACTCAAATTATTGCAAAAAAGGAAATATTCGATTCAAATTTAGAATTGGAAAGAATCGAATATGAATATTATGACGTAAATCACAATACCGTAGGCCAGTACACTGGCCTAAAAGACAAGAGCGGAAAGGAGATTTACGAGGGGGATTTAATAAAAGCTCCAAGCGGACGTATTTATGCCGTTATATTCTCAACATGGAAATATGAAGAGAAAAGAGAGTTTCTAAAAGTAATTGATATTTATGAACATACAGGATGGTGCATATCCCTAGATGGGGTTAATCCATGTGGACTGCTAGACTTTGAGGTGTGCCAAGGAAGTGTTATAGGCTCAGTGTATGACAACCCAGAACTACTGAAAGGAGGCACGAAATGA

Protein sequences of DBSCAN-SWA_2

>NC_009615|999093:1006646|1000938_1001874_+|WP_011966197.1|DBSCAN-SWA
MDKGFIMLSRKFFSNEMWEAARTFSECEAWLDLIQSARFDATRLTASIGGREITYGRGQYPASVRFLSKRWRWGEQKVRSFIEKLIKKGMVTTDNSQGMTVITLVKYDDYNINNTANNTQDNTSNVLDYNRIKEFVTQVVTQQITQLQHSDNTKKNKENKEKNIGDSDESLVCGTSQPHTEHIDYSELVKFFNEETKGVFGTVRTPLSDSRKGMINARIKSYGKKTFADMIRKAYQSDFLKGQNKKGWTASFDWLIKPTNFEKVISGNYDNKNSRNDPAIPNRAKSREEQTDREILEYAAKAFGKGMVSSK
>NC_009615|999093:1006646|999093_999570_+|WP_041525548.1|DBSCAN-SWA
MMYYIKRKTKKKDKPLSLFDKAGVTVKKKPDLKAKLDKEFSLFIRLRDCMPNGYFKCISCGQIKPFEQADNGHYINRQHMSTRFDEMNCNAQCRHCNRFMEGNIQNYRKGLIAKYGEQRVVLLEAKQGISRKFTDFEYEQLIKYYKALNKKLKKERGL
>NC_009615|999093:1006646|1003876_1004686_+|WP_011966200.1|DBSCAN-SWA
MRTPITYYGGKQNLSERIVSMMPRHKIYCEPFFGGGAVFFAKPKAGIEVINDKNDLLINFFKVCQSASKFKELRERIRLSLHSESDYIRARNIYRGRSEVSDVDKAWAVWIMANECHSGSLYGGWKFCNGTAGTHFGKVFRNKREEFNDKLYDRLSEVQISCRDALKVIKNRDSVDTLFYLDPPYPGAVQGHYYGYGENDLADLLDLLSRINGKFILSNYWTDTLRSFVNENKWNHKEVKVTTHTAVHSRIRESTEVLVYNYEIEKTLF
>NC_009615|999093:1006646|999566_1000736_+|WP_011966196.1|DBSCAN-SWA
MSYVLRDYQQKASDAAVSFFNNKAKKTNAIMVLPTGSGKSLIIADIAARLDGHTLVFQPSKEILEQNFKKLCSYGILDCSIYSASFGRKEISRITFATIGSVINHPDLFSHFQSIIIDECHLVNPKEGMYKTFLELLKCKVLGLTATPYRLSSSQEFGSMLKFITRTRPAIFKDVIYHVQVSTLLDMGYLSKVNYYSMNPTGWNELNLKINTTGADFTDKSVQREYERIDFYSYIVHIVQRLMNPKAGGKRNGILVFTRFLKEAERLTWSIPGCVIVSGDTPKKERERILEMFKTGEIPVVANVGVLTTGFDYPELDTVVMARPTMSLAMYYQIVGRCIRPYKGKTAWFVDLCGNINRFGKVADLYLKDSGNGKWAVFSKGRQLTNVRF
>NC_009615|999093:1006646|1002545_1003829_+|WP_011966199.1|DBSCAN-SWA
MTHGSLFSGVGGFDLAAEWMGWENLFHCEINEWCQKVLRFHFPKSIQYDDITRTDFTPWRGKVDVLTGGFPCQPFSTAGKRRGAEDDRYLWPEMLRAIREIRPAWVIGENVAGITSMVQPGSEVTVESQASLFEKADKETILEQEYVIETVCRDLEREGYSVQPILIPACGVGAPHKRDRVWFIAHSEGDGDRGASHEGGGTTQGSYGKEIEQSFIGSGIWTTSHPNCSRGLQFGERRDIRDKEQYDQDKEPERHEQPSRFGGSGEAYVISDTDSPRFQAKGSEQQTTGITGGGLRKDVTDTYGEKLQTWLKNNGREIEEENIARLDNGVERSCCIRAFAESDKKRRCLMQYTSNDWPALSAELWKDFPTQPPVCRRNDGLPFDVDYLAIPFTKWRQESIKAYGNAIVPQVAFEIFKAIETSTFHHS
>NC_009615|999093:1006646|1004687_1004834_+|WP_158303807.1|DBSCAN-SWA
MRNKELIALLQEQDPEAEVMIRTSDKEYYYDLVDVFTDKDGDVILQEG
>NC_009615|999093:1006646|1005655_1006189_+|WP_011966203.1|DBSCAN-SWA
MNTQICTNKKQSSRLLEAGVRPDTADMYLDEFELPVAFEYRRIEGHVGQDMAFPAWSLSKLIDMMPKSYQDDIDGMVYYLSGNFVELMYASDWIKDGEGDNTYNCAKSFDKENLMDNMVDAIEWLIREGHLNKKFLTDKCGDCRLIEDEDTNGEAWCAFHQKPTMCDSRACKDILKK
>NC_009615|999093:1006646|1006196_1006646_+|WP_011966204.1|DBSCAN-SWA
MREIKFRGKCFDNEWVFGDLLQSNITQIIAKKEIFDSNLELERIEYEYYDVNHNTVGQYTGLKDKSGKEIYEGDLIKAPSGRIYAVIFSTWKYEEKREFLKVIDIYEHTGWCISLDGVNPCGLLDFEVCQGSVIGSVYDNPELLKGGTK
>NC_009615|999093:1006646|1001830_1002388_+|WP_041525550.1|DBSCAN-SWA
MPQKLSEKAWLVVNRYGDGESFAKKFNPSLQVVCAQNVERSFKGNAPSLALLGETYPDEQVNTWIIAQLMDLYKFAGVKEKPTFQQVLELSVMIRVEYYYLKASELLLFFFKLKAGEYGTFYGVVDPMVIMSALIEFKAYRKRQLEKYDREEQERQREERYEKQGKNSVPFPDHLEFLKKIMESE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041525548.1|999093_999570_+	recombination protein NinG	A0A1B1IPZ2	uncultured_Mediterranean_phage	1.3e-19	40.2
WP_011966196.1|999566_1000736_+	DEAD/DEAH box helicase	A0A0S2MWK8	Cellulophaga_phage	2.4e-51	35.8
WP_011966197.1|1000938_1001874_+	hypothetical protein	A0A1L2BY83	Clostridium_phage	8.6e-12	45.1
WP_041525550.1|1001830_1002388_+	hypothetical protein	NA	NA	NA	NA
WP_011966199.1|1002545_1003829_+	DNA cytosine methyltransferase	A0A0F7L3U1	uncultured_marine_virus	1.3e-55	33.4
WP_011966200.1|1003876_1004686_+	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	1.8e-21	29.9
WP_158303807.1|1004687_1004834_+	hypothetical protein	NA	NA	NA	NA
WP_011966203.1|1005655_1006189_+	hypothetical protein	NA	NA	NA	NA
WP_011966204.1|1006196_1006646_+	YopX family protein	A0A0A0YSW1	Flavobacterium_phage	2.4e-12	34.7