CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007517	Geobacter metallireducens GS-15, complete sequence	3 crisprs	csa3,Cas9_archaeal,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas6,DEDDh,WYL,DinG	0	3	9	0
NC_007515	Geobacter metallireducens GS-15 plasmid unnamed, complete sequence	1 crisprs	NA	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007517_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007517_1

168779-168922

Orphan

Consensus_repeat	Method
CGTCGGTGACGGCGCCGTCGGCGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_007517_1

>merge|NC_007517|1|168779-168922|CRISPRCasFinder
CGTCGGTGACGGCGCCGTCGGCGAGCTTCGGCGTGGTCACCGCACCGAAGCCGAGTTTCTCGTCGGTGACGGCGCCGTCGACGATCTTGCTGTTGGTAACGGCGCCGGGGACGATGGCCCGGTAGGTGACGGCTCCGTCGGCGA

>NC_007517|1|1|168779-168922|CRISPRCasFinder
CGTCGGTGACGGCGCCGTCGGCGA	GCTTCGGCGTGGTCACCGCACCGAAGCCGAGTTTCT
CGTCGGTGACGGCGCCGTCGACGA	TCTTGCTGTTGGTAACGGCGCCGGGGACGATGGCCC
GGTAGGTGACGGCTCCGTCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007517.1\|WP_187148460.1\|175220_175526_+\|DUF167-domain-containing-protein	unknown	unknown	gnl\|CDD\|376843
NC_007517.1\|WP_004512720.1\|163534_164944_-\|phosphoglucomutase/phosphomannomutase-family-protein	unknown	unknown	gnl\|CDD\|100093
NC_007517.1\|WP_004512729.1\|173598_175206_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238425
NC_007517.1\|WP_004512719.1\|162482_163436_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213370
NC_007517.1\|WP_004512726.1\|170134_170854_-\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|274447
NC_007517.1\|WP_004512722.1\|165783_166383_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182824
NC_007517.1\|WP_004514134.1\|156785_157076_-\|hypothetical-protein	unknown	unknown	unknown
NC_007517.1\|WP_004512732.1\|175821_180354_+\|glutamate-synthase	unknown	unknown	gnl\|CDD\|236968
NC_007517.1\|WP_004512723.1\|166487_167897_+\|DUF4139-domain-containing-protein	unknown	unknown	gnl\|CDD\|227628
NC_007517.1\|WP_004513407.1\|159268_160225_+\|IS110-like-element-ISGme8-family-transposase	unknown	unknown	gnl\|CDD\|226077
NC_007517.1\|WP_004512721.1\|165101_165746_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NC_007517.1\|WP_004512718.1\|160294_162481_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NC_007517.1\|WP_004514135.1\|157341_157992_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_007517.1\|WP_004514136.1\|158319_158961_+\|YXWGXW-repeat-containing-protein	unknown	unknown	gnl\|CDD\|235777
NC_007517.1\|WP_004512725.1\|169143_169854_-\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NC_007517.1\|WP_004512727.1\|171025_172267_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|290183
NC_007517.1\|WP_004512731.1\|175544_175769_+\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NC_007517.1\|WP_004512728.1\|172441_173467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237874
NC_007517.1\|WP_004512734.1\|180612_181827_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NC_007517.1\|WP_004512733.1\|180390_180579_+\|ferredoxin	unknown	unknown	gnl\|CDD\|379145

Protein	Function_ID	Function_description	E-value
NC_007517.1\|WP_187148460.1\|175220_175526_+\|DUF167-domain-containing-protein	gnl\|CDD\|376843	pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872.	5.47439e-23
NC_007517.1\|WP_004512720.1\|163534_164944_-\|phosphoglucomutase/phosphomannomutase-family-protein	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
NC_007517.1\|WP_004512729.1\|173598_175206_+\|thiolase-family-protein	gnl\|CDD\|238425	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.	2.57748e-80
NC_007517.1\|WP_004512719.1\|162482_163436_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213370	cd12836, HpCorA-like, Mg2+ transporter Helicobacter pylori CorA-like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporter Helicobacter pylori CorAs (which can also transport Co2+, and Ni2+); CorA plays an important role in the viability of this pathogen. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB (members of the EcCorA_ZntB-like family) form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	7.6042e-151
NC_007517.1\|WP_004512722.1\|165783_166383_+\|peptidylprolyl-isomerase	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	1.40053e-78
NC_007517.1\|WP_004512726.1\|170134_170854_-\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	6.80057e-32
NC_007517.1\|WP_004512732.1\|175821_180354_+\|glutamate-synthase	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	3.80554e-132
NC_007517.1\|WP_004512723.1\|166487_167897_+\|DUF4139-domain-containing-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	1.47287e-85
NC_007517.1\|WP_004513407.1\|159268_160225_+\|IS110-like-element-ISGme8-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.445e-38
NC_007517.1\|WP_004512721.1\|165101_165746_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	5.09935e-54
NC_007517.1\|WP_004512718.1\|160294_162481_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NC_007517.1\|WP_004514135.1\|157341_157992_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.25707e-15
NC_007517.1\|WP_004514136.1\|158319_158961_+\|YXWGXW-repeat-containing-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	0.000246936
NC_007517.1\|WP_004512725.1\|169143_169854_-\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	2.74674e-05
NC_007517.1\|WP_004512727.1\|171025_172267_+\|cytochrome-c	gnl\|CDD\|290183	pfam13447, Multi-haem_cyto, Seven times multi-haem cytochrome CxxCH. This domain carries up to seven CxxCH repeated sequence motifs, characteristic of multi-haem cytochromes.	1.04007e-28
NC_007517.1\|WP_004512731.1\|175544_175769_+\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	1.66163e-37
NC_007517.1\|WP_004512728.1\|172441_173467_+\|hypothetical-protein	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	7.31889e-07
NC_007517.1\|WP_004512734.1\|180612_181827_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NC_007517.1\|WP_004512733.1\|180390_180579_+\|ferredoxin	gnl\|CDD\|379145	pfam13370, Fer4_13, 4Fe-4S single cluster domain of Ferredoxin I. Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteristic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.	1.63963e-12

>NC_007517.1|WP_004512723.1|166487_167897_+|DUF4139-domain-containing-protein
MRQRFLPLLALLSLLLPLPAPAAPTVSTVADQTGIALTIYNRNLGLVKDRREIRLAPGNGELRFMDVAAQIIPTSVSIASLAGGELQVLEQNYEYDLLSPQKLMDKYVGKEVKLHQKNPYTEREEVVTATLLSNNGGPVYRIGDEITFGHPGRLIFPGVPDDLIARPTLVWLLEGAAVEKRTIEASYLTGGISWRADYVVTLSEKDDQANLAGWVTIDNRSGAAYRNATLKLVAGDVNRVQEQSTRFAKSVRAEAMAPAPQFQEEAFFEYHLYTLQRPSTIKENQTKQINLVTADAVPVKKEFLLKGESFYYQSPAGEVEKQKVGVFVEMENRKEHNLGMPLPKGIVRVYKRDAGGSLQFVGEDTIDHTPEKETVRVKLGDAFDVVGERKQTEWRKVASDTYESAFEIRLRNHKKEDITVKVVEPVPGDWQMLSSSHPHEKGDAFSAVFKVPVPKDGEATLVYRVRMRY
>NC_007517.1|WP_004512722.1|165783_166383_+|peptidylprolyl-isomerase
MFKRIILALTICGLFSVLLIAGNADAAAKAEKAKNPVVLMETTLGPVKIELYPDKAPVSVKNFLDYVNSGFYNGTIFHRVIPGFMAQGGGFTADRKQKETKAPIKNEAANGLKNDRGTIAMARTANPDSATAQFFINVVNNDGLNRPNPDGFGYAVFGKVVEGMDVVDKIVATPTQRLNMVFANLPVTPVVITSMKAVK
>NC_007517.1|WP_004512721.1|165101_165746_+|50S-ribosomal-protein-L11-methyltransferase
MYGRIFTPFAIGGFTIVPEDHPEDPAAGLPLIMGKKGAFGSGEHETTASCLEEMERIPGIAGMRCLDLGSGTGILAVAAIRLGAASVVAVDIDPKAAESCAANVRLNGMEGRIFSVCGELASVGREPYDLLLANIYADIHLALAHEMVGLVRPGGWLILSGIPLQDKFDIQRRFRNLGCIEHDWQILEEYVTIVLRKPDAEGDEMIDEKAASSL
>NC_007517.1|WP_004512720.1|163534_164944_-|phosphoglucomutase/phosphomannomutase-family-protein
MQIKFGTDGWRGVIARDFTFDNLSRVAQATMEYLIREGLAPRGLVIGYDRRFLSREFAERVAEIAAGNGIRVWLTAGYAPTPAVSWAVHELGAGGGVMITASHNPPAYNGFKVKESFGGSARPSTTKILEEMVAANDAAGREIKARPLAEALADGSVATFDPKGGYFRQLARYVDLEAIRKANLPVVVDPMFGAGAGFVPELLPGVREIHGDENPSFGGQPPEPTEEHLTELAALVASGRYRIGLALDGDADRIGAVDETGEFFSSHRIFTVILRHLVERKGLTGGVVKTVSTTRMVDLLAEKFGLPLHETPIGFKHICELMLDHDILMGGEESGGLGVKGHIPERDGILMGLLLLEAMAVSGKGVRQLLDETMDEIGRFCYRRIDLPIADAAKELLIARLKQGGIASIAGRNVARENFRDGFKFIFEDGSWLLIRPSGTEPVLRLYSEAGDAQTVEELLAAAREIAGL
>NC_007517.1|WP_004512719.1|162482_163436_-|magnesium/cobalt-transporter-CorA
MIKAYLRAEDSFRTVSVEPDELVDLDVSSLIWLDLLSPSTDELATVERSLKIELPTRQESEEIEFSSRFWEDESGIDINTYFLVRQEEKFHNETVSFILRGKFVVTIRFSDHRIFTEFSRKLRLSPRSFRDGADILSGILAMRVDMDADTLEALSRGIASLGRRGPQTFENPTEYLSHITDYEDINITIRENLTDKHRVLSSLLKSASISENLKKEFSMMMKDVNSLVISANFNFERLDYIQNLFLNHLSVEQNKVIKIFTVMSVIFLPPTMIASIYGMNYKHMPELEWVFGYPFALTLIILSAVLPLYVFKKKGWL
>NC_007517.1|WP_004512718.1|160294_162481_-|polyphosphate-kinase-1
MARKPSSPKRTAPETAAGGEWSVCDLAAPELYLNRELTWLAFNRRVLHEAEDERTPLLERVKFAAIVSSNLDEFFMKRIGGLKQQVGAGIQNLTVDGRTPRQQIEECYAVVRELGERKRLLFGELLTLLRSAGIQILGYSEIPARERKGLRDYYIRNIFPLVTPQSIDPAHPFPFISNLSLNLLVTLRYPRERETSLARVKVPVGTGIPRFLRVGDKDRFVPLEEVMQHNLDLLFPEMEVVACEFFRVTRNANTERNEEQADDLLSMIESELQDRRFAPIVRLEVVAGMGAVHRGMLAAELELNEAADVFEVEGMLALRDLFEIAGLGYPELHDPSHHPVDHPRLMTDRNIFHVIRDAGAILLQHPYDSFATSVERFLFEASEDPKVRAIKMTLYRTASDSRIIDCLVNAASNGKQVAVAVELKARFDEAANIRLAERMEEAGIHVTYGVVGLKTHCKVILVVRQDYDGLRRYVHIGTGNYHPGTARLYSDLGLLTSDEAIGQDATELFNYLTTGYTPRRNYQKLLPAPKHLKRALLARIEREAELHSEKTPGLIQFKMNALEDADIVAALYRSARKGVRIDLLIRDSCRLRPGVPGLSETVRVVSVVGRFLEHSRIYYFRNNGDEEYYIGSADAMKRNLEYRVEVLAPVEAPDLRKELRAMLDAQLGDRRSAWEMQPDGSSVQRMPGEGDDPRGSHEILIALAEKRRKAGARLKKKKARGVVRRPVR
>NC_007517.1|WP_004513407.1|159268_160225_+|IS110-like-element-ISGme8-family-transposase
MEPNDAVVGVDVSKEHLDVYLMPTGDQKRVTNDDAGCAELTTWLITNAPCRIVLEATGGLEMLAVSTLSAAGLPVVVVNPRQVRNFAKACGLLAKTDILDAKIIARFAQAIKPEIRPLKDETSQNLAALLARRRQLVEMLVAEKNRVISAAPTVRKGIMTHIAWLTQQIDDVDKDISTLIQSSESWKAKEEILTSVKGIGPVTAATILAALPELGTISRQQLGALVGVCPYNRDSGKFRGKRAISGGRATVRSVLYMATLCAARFNPVIKAFYQRLTSAGKLHKVAITACMRKLLTILNAMVKNNQKWDHSKFTPLLH
>NC_007517.1|WP_004514136.1|158319_158961_+|YXWGXW-repeat-containing-protein
MTSKIIASIACLAALTGTAHAGNVDFSIGINLGNRPVAVYEPVYAPAPPPVYAPAPPVRYEPVYASAPRPVYVPAPPPVVIAEPPEFVLSPSLGFYVAIGTPYDLFYAGNRYYLSRNGVWYNGASYQGPWTTVTYRSLPRELRRYPVATIRYQRDRDYRRWCDDDHDQWRSFRPERERREIRQDEKARWREAKWREKEWRKHGRDRWDDDDRD
>NC_007517.1|WP_004514135.1|157341_157992_+|LexA-family-transcriptional-regulator
MAVSPIVPTPSTGRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWLASGEGEMYRTPRRAGQPATSPGGEGIPLLERIGPEFPHRVGEDDIRDRVALPEVSEGCYAIVAYGDFMAPTIRDGDLVIFRPGEEPQNGEVVLVTNRWGEAILRRYRVRNGDIVYSPDNATYSPFTPAPETRIIGTVAEVWRKVKL
>NC_007517.1|WP_004514134.1|156785_157076_-|hypothetical-protein
MKGAHGRFCEVSQLLAGDARGGQLADDLLNACFDHVLPEDGGEGSMKTLAHLMVTLDRFNAHVRREGGEGLFVGSPEEVAAWAEELTRQIWENRPN
>NC_007517.1|WP_004512725.1|169143_169854_-|cytochrome-c-biogenesis-protein-ResB
MIKRIYEFLASLSLGLWLMGGVMAFLAAGSFGGEDAASLNEMPLFVWLGAAPFSASWWLWGTLVLLALMVVNTLLCSVEAIRKRYGKSGLLALLAPQLMHAGFLLIVLAHLLSAKGGEKQAMQLFEGSNLRFPGGSFVMVDAIEVETDPRGMPLDYRARMRVVEQGRSTPVTVRPNEPLFHDGVGIYLKQAAPFPYPTAYVEIHREPGAGWALAGALLFTAGNVMLLAVRRERRTA
>NC_007517.1|WP_004512726.1|170134_170854_-|cytochrome-c-biogenesis-protein-CcsA
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIGLMALPFLLSPALRQQSFFSWGMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAFFSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFSASMVSGGIWGYFAWGTYWLWTPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF
>NC_007517.1|WP_004512727.1|171025_172267_+|cytochrome-c
MKGLIVRYGMVAVVAVLGIAASLGLRAAPTEAAQKSKCISCHEKVTPGVVTQFLSGKMGKTLDCSTCHGSDHQTEKDVAKVKLPTPETCAQCHEKRVKEYREGKHALAWVSMKAMPMINHQPSSVGGGDLKGCSACHKVGEKPMADLTRYGTGACDSCHTRHSFSVKEARDPRACRTCHMGFDHPQWEMWQTSKHGTIWEIEPTTGRAPTCQTCHMPDGSHGVMTAWGFLALRVPEDDKEWWDNRVTILKAIGVLDEKGQPTERFEAVKAAKIARLTKEDFDKERKKMIDVCSKCHSRSYAEANLKAGDDIIREVDKIFADSIRTVKALYDDGILKKPADWKYAPDLLQFYEAKSAAEQELYLIFLEYRQRAFQGAFHANPDYMHWYGWAKVKEASARIKEDAERLRAEAKKH
>NC_007517.1|WP_004512728.1|172441_173467_+|hypothetical-protein
MKRIIQWICLAALALAAFGCAHDPFNIPRADYEQKVKVLGVAPIFMDADSDIRHPEKDTLVTLVREYNRKNEKELAEMIKESGAYFSVRFLDAAAPDELYRTLLLRAERRDDAGVVYNKQFFKPEEIRTLVTQNNVDAVLLVTVSGLTMRDRIFSSNLVKYLDSDYNVLSASAQILDANGATLWEYPNFRAGSPSTPVLAELQYPDFDEGAANMDERINVKFKTIPGLTRYLGKKEKDLLFRERKATVPYYHLFDEMVELLKPPIKLFGDEKKGGSAPQPASYQPQPASQPSYQPAPQPAPASKAAPAPAAQPVPAPQPESVAVPEPTPIREVPIDAKPVQ
>NC_007517.1|WP_004512729.1|173598_175206_+|thiolase-family-protein
MRHPEFTPRRVYVAASYMAPVGRYDGKHREQLSFLDLAEKAKSVFNDSPVKPRAIEAVVVGSQSPVAFSGVDNTAAKIAGVVGVSGAKSVLIDTASSSGASAFENAYLQIASGRCDHVLAIGIQKMSDAPTTEATRIVAGVIDKDEAEFGLSMPACGALVARALMERHGLSIDEWTAFSALLTQRAHRYAARNPDAHLNREIPLEEYYRQIINGKNYRYWWPLRYHDFCPMSDGVAAVILTAAPQEVMVSGVGSATDIPTIADRNYFHSFPATVAAAAEAYGMAGIRDIRAFAGKIHVNMHDPFNGFGPINMVDLGFVPRGRILDALLDDACTGENGMFPTNLTGGLKGRGHPLGATGMIQVVENHRMILEGRFQAGVSHSIGGPINNNIVTLLERSDHYERRPHEPYKPWGLPSLGRLKPKEVTVDALLAETGVVEGTFVTATTRFDYRSGDPEGIITIVSCRAQSGKSYRFLFGIAGENYQQLIKLLPGDRISLERSDGQILLNRMPVKKFYQRTIDGLVDLAGSGWKRLTGW
>NC_007517.1|WP_187148460.1|175220_175526_+|DUF167-domain-containing-protein
MVKKPFYTWDGDTLVLNILGTPNAKRDAIGKVKGHQLCVSVTAIPRAGRATDHMVRFLADEFGVSVGDIQVVFGRMNVNKQLRIKAPKRLPPLIGQQEFPL
>NC_007517.1|WP_004512731.1|175544_175769_+|DUF3820-family-protein
MEQYPSNDHEQLLELATMRMPFGKYQGRRLIDLPEPYVVWFAGQGFPEGKLGTMLRAVYEIKVNGLEYLFDRLR
>NC_007517.1|WP_004512732.1|175821_180354_+|glutamate-synthase
MTNKTIDPSGLVPPERDACAIICYINKEARPTHGNVQRTIEALIKMGHRAGEINGEGDGCGVLTDIPRMIWREVLAGAGHDPNLAEMPGFAVGHLLLPKEATAADPQLQDKILARFATAGVQLLVERPGIVRSEVLSSRAREGEPLFWQVALLCPEKVAAPALLFELQTAIERDFPVHVASLSADVAAWKVHGSPEILSRYYPELKRREFLSSVTIGHSRYSTNTLPTVLRAQPFSLLGHNGEINTIARLREEARMMGIPLFADGSDSQDLNRTLEGLMFRYGLTLFEAMEVVFPPIFSAMDGMAPELKSMYTWFRRFLKASAQGPAAIIARHRELCVFSVDAMGLRPLWVGETTKEIFASSELGVVPHEEILADPKPLAPGEKVGVRIAAGRTVELVDHPALRQEIYQSFRKRTNLPAQEKALAAGAELQGGAPALAARFGRNSKLHQDNLMSAFAWKSSDLSNLREMAKNGSDPIASLGYDGPLASLSNQRQNLSDYFKEQVAVVTNPAIDREREAEHFSTRVYLGPRPQFRGPARPGVALEVPLLTGGRRTGTDPDDVAVAREFGTATLEGLVAAFGEGKGRCRVIPCFMGKDERLGDALARLTCEAVGAVTRGATMLLLDDSDCFGPGKSFIDPFLVTAVLHKGLKETTDSAGESQRRRASLVVRSGALRSLHDLIFALGMGADALCPYLMWEGAGDTAGVRNLLSVLAKGLEKVISTMGTHEIGGYGKYFASIGLCGHLAGIFETPNFCGSGQGGLTLERLEAENRSRSAVARSRQKQPVPVQFRLYPKIWKMVGAVAKMEETYADLSRLIQQLEAENPLAIRHLLDLRYTSELTVDPDEVDTSVGDHTLPILFSAMSFGSQGETPFRIYAEAAKRLNIVCMNGEGGEIADMLGQYRKNRGQQIASGRFGVNMAFLNSADFLEIKVGQGAKPGEGGHLPGFKVTAKIAAARHATPGVSLISPSNNHDIYSIEDLAQIVEELRTANPTARISVKVPAVAGIGTIALGVAKAGADIITISGYDGGTGAARKHAIKFVGLPAEIGVSEAHKALVSAGMRQKVEIWADGGARTGRDVVKLMLLGANRVGFGTMAMVVIGCTACRGCHLGTCHVGIATQIETTEEAEARGLKRFVPRVLENGVIYMCTFFRGMSREIRILTAKLGFRRTRDMVGRSDLLGQARGLDRLDLAELLRPAQSAEASSFEPEVRIIRKPLNYLTSLISGLVTDAFAAGEERVRYDDDNATSSDRAIGTHLAGAYVRGMAEGRFRPEQNALLQFHRDAIPGNGLAAFSINRINILVEGGAQDGVGKCASGGKIVILKGENREGRRVGGTVGKGLAYGAQGGTFLIQGDADSRACIRLSGADVVFGSRIREPLDDSRGDTACRANLKGFAFEYMTAGRVVVLGDPGPWICSGMTGGVVYCRLDGAMGLDREALRRRLARGAGVEIRDIGEEDVAAIGELLLKYHRELLHSHQEEEADAVERIIAAARSGFVKIVPEKNIVTPRSTE
>NC_007517.1|WP_004512733.1|180390_180579_+|ferredoxin
MARNVYVEKDVCISCGLCVETVPEVFRFDDDNLAEAYDPAGAAEEKIQEAIDACPVSCIHWG
>NC_007517.1|WP_004512734.1|180612_181827_+|acetate-kinase
MIILILNCRGFSIHFQLFDWSTRTILARGDVDRIELGDSFIVMEVPGRDPYHLDSDCSSFGAAVALILSTLTHPLEGPLDRVEQIAAVGHRVAHGGERFTSSVTINEEIIAAVRGFEELAPLHIPANLAGIEGAMATLPRTPHVAVFDSAFHQTMPLHAYIYPLPWEWYEKHGVRRYGFHGAPHCYAAQRGAALLGRDPAACNLVTVHIGNGTSLCAVEGGRSIDTSMGLTPLEGTMMGTRCGSIDPGIPPFMMQEEQLAPRDMDRILNQRSGAAGITGLKLDRAAFLARAAEGNERCLLALEMEAYRLKKHIGGYAAALGRLDAVVFSTASGEGEWLVREKTLADMEIFGIRLDRERNRAARSVEREERISADDSPVAVYVVHTEEEMVYAEEVAALLNGAGG

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Crispr_ID: NC_007517_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007517_2

329039-329214

Orphan

Consensus_repeat	Method
GCCCTCATCCGACGCTCTTCCTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_007517_2

>merge|NC_007517|2|329039-329214|CRISPRCasFinder
GCCCTCATCCGACGCTCTTCCTGCCGTCGTTCTCTCTGGCCGGGAACCGGCGCACTTTGCTCTCTCTGCTGTGCCGGGGCTCTCATCCGACGCTCTTCCTGTTTTCCCCGTTGCACGGGCAAAGTTTCTCTCGGGCCTCTTTGCTGCTCCGGGGCTCTCATGCGGCGCTCTTCCCG

>NC_007517|2|2|329039-329214|CRISPRCasFinder
GCCCTCATCCGACGCTCTTCCTG	CCGTCGTTCTCTCTGGCCGGGAACCGGCGCACTTTGCTCTCTCTGCTGTGCCGGG
GCTCTCATCCGACGCTCTTCCTG	TTTTCCCCGTTGCACGGGCAAAGTTTCTCTCGGGCCTCTTTGCTGCTCCGGG
GCTCTCATGCGGCGCTCTTCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007517.1\|WP_004514001.1\|322541_324599_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_007517.1\|WP_004513995.1\|315610_316501_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	unknown
NC_007517.1\|WP_004514013.1\|338212_338653_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|237733
NC_007517.1\|WP_004513599.1\|313582_313954_+\|hypothetical-protein	unknown	unknown	unknown
NC_007517.1\|WP_004514010.1\|335399_335927_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|377434
NC_007517.1\|WP_004514005.1\|330004_331471_-\|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552	unknown	unknown	gnl\|CDD\|367039
NC_007517.1\|WP_004514008.1\|333764_334772_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NC_007517.1\|WP_004513998.1\|319622_320759_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235715
NC_007517.1\|WP_004514002.1\|324647_325661_+\|DUF2169-domain-containing-protein	unknown	unknown	gnl\|CDD\|370755
NC_007517.1\|WP_004514007.1\|332234_333692_+\|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552	unknown	unknown	gnl\|CDD\|367039
NC_007517.1\|WP_011365649.1\|335989_337105_+\|bifunctional-molybdenum-cofactor-guanylyltransferase-MobA/molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB	unknown	unknown	gnl\|CDD\|237727
NC_007517.1\|WP_004513997.1\|317491_319621_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NC_007517.1\|WP_004513999.1\|320789_321503_+\|DUF4150-domain-containing-protein	unknown	unknown	gnl\|CDD\|372665
NC_007517.1\|WP_004514014.1\|338882_339074_+\|hypothetical-protein	unknown	unknown	unknown
NC_007517.1\|WP_004514000.1\|321536_322541_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375852
NC_007517.1\|WP_004514006.1\|331482_331944_-\|cytochrome-c-nitrite-reductase-small-subunit	unknown	unknown	gnl\|CDD\|274453
NC_007517.1\|WP_004514012.1\|337130_338111_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_007517.1\|WP_004514009.1\|334860_335310_+\|PAS-sensor-domain-containing-protein	unknown	unknown	gnl\|CDD\|272971
NC_007517.1\|WP_011365646.1\|314161_315238_-\|IS5-like-element-ISGme1-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_007517.1\|WP_004513996.1\|316523_317402_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659

Protein	Function_ID	Function_description	E-value
NC_007517.1\|WP_004514001.1\|322541_324599_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	0.000779292
NC_007517.1\|WP_004514013.1\|338212_338653_+\|MOSC-domain-containing-protein	gnl\|CDD\|237733	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein.	2.40499e-67
NC_007517.1\|WP_004514010.1\|335399_335927_+\|HPP-family-protein	gnl\|CDD\|377434	pfam04982, HPP, HPP family. These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.	8.00428e-37
NC_007517.1\|WP_004514002.1\|324647_325661_+\|DUF2169-domain-containing-protein	gnl\|CDD\|370755	pfam09937, DUF2169, Uncharacterized protein conserved in bacteria (DUF2169). This domain, found in various hypothetical prokaryotic proteins, has no known function.	8.61591e-122
NC_007517.1\|WP_004514008.1\|333764_334772_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	1.06946e-28
NC_007517.1\|WP_004513998.1\|319622_320759_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|235715	PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase; Validated.	3.32247e-132
NC_007517.1\|WP_004514005.1\|330004_331471_-\|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552	gnl\|CDD\|367039	pfam02335, Cytochrom_C552, Cytochrome c552. Cytochrome c552 (cytochrome c nitrite reductase) is a crucial enzyme in the nitrogen cycle catalyzing the reduction of nitrite to ammonia. The crystal structure of cytochrome c552 reveals it to be a dimer, with with 10 close-packed type c haem groups.	0
NC_007517.1\|WP_004514007.1\|332234_333692_+\|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552	gnl\|CDD\|367039	pfam02335, Cytochrom_C552, Cytochrome c552. Cytochrome c552 (cytochrome c nitrite reductase) is a crucial enzyme in the nitrogen cycle catalyzing the reduction of nitrite to ammonia. The crystal structure of cytochrome c552 reveals it to be a dimer, with with 10 close-packed type c haem groups.	0
NC_007517.1\|WP_011365649.1\|335989_337105_+\|bifunctional-molybdenum-cofactor-guanylyltransferase-MobA/molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB	gnl\|CDD\|237727	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional.	9.59246e-165
NC_007517.1\|WP_004513997.1\|317491_319621_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NC_007517.1\|WP_004513999.1\|320789_321503_+\|DUF4150-domain-containing-protein	gnl\|CDD\|372665	pfam13665, DUF4150, Domain of unknown function (DUF4150).	3.97561e-42
NC_007517.1\|WP_004514000.1\|321536_322541_+\|hypothetical-protein	gnl\|CDD\|375852	pfam18426, Tli4_C, Tle cognate immunity protein 4 C-terminal domain. T6SS bacteria employ toxic effectors to inhibit rival cells and concurrently use effector cognate immunity proteins to protect their sibling cells. The effector and immunity pairs (E-I pairs) endow the bacteria with a great advantage in niche competition. This is the C-terminal domain of Tli4. The Tle cognate immunity proteins (Tlis) can directly disable the transported Tle protein and thereby mediate the self-protection process. The Tle-Tli effector-immunity (E-I) pairs confer substantial advantage to the donor cell during interbacterial competition. Tli4 displays a two-domain structure, in which a large lobe and a small lobe form a crab claw-like conformation. Tli4 uses this crab claw to grasp the cap domain of Tle4, especially the lid2 region, which prevents the interfacial activation of Tle4 and thus causes enzymatic dysfunction of Tle4. Structural comparison indicates similarity between this C-terminal domain of Tli4 and Tsi3, which is the cognate immunity protein of the effector protein Tse3 in P. aeruginosa PDB:4n7s.	6.82364e-15
NC_007517.1\|WP_004514006.1\|331482_331944_-\|cytochrome-c-nitrite-reductase-small-subunit	gnl\|CDD\|274453	TIGR03153, cytochr_NrfH, cytochrome c nitrite reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrite reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones. [Energy metabolism, Electron transport].	1.27652e-57
NC_007517.1\|WP_004514012.1\|337130_338111_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	3.56284e-149
NC_007517.1\|WP_004514009.1\|334860_335310_+\|PAS-sensor-domain-containing-protein	gnl\|CDD\|272971	TIGR00229, Sensor_protein_FixL, PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions].	1.89601e-15
NC_007517.1\|WP_011365646.1\|314161_315238_-\|IS5-like-element-ISGme1-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.01495e-26
NC_007517.1\|WP_004513996.1\|316523_317402_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.18809e-14

>NC_007517.1|WP_004514002.1|324647_325661_+|DUF2169-domain-containing-protein
MDLLNSTPLIASHNILTDRNGAETLLVVVKGTWRIGRNGALSIAGEQVPIQLEPRYLGDPAASSLIYDTDLILEKPGTDCILLGYAWAPKVGVGSVDVTFGVGPLRKTVRVFGERIWMKCLGMVSMSKPAPFEKIPLVWERAFGGSDTSWPEPKEHEFCLENPVGTGLLARKTKLEIDGLRLPNLEDPAHLIKKPTDRPKPVGFGPIPPHWFPRAGYAGTYDDQWRKYVSPLPPDDLDPRFYLAAAPGLTTARHLAGTEQVLVENASRAGRLQFQLPGGTPSVSVQIRAAVLELEMRLGTVIVEPDEERLVLVWRGHQNVHGKIHDVYGVRVGYGGL
>NC_007517.1|WP_004514001.1|322541_324599_+|alpha/beta-hydrolase
MSTTLKVNHEELVRPISELKTDARQRIAFDRKVIPIIFIPGIMGSRLKNRFNKRIWDPDRPGWMLWKYGIFKAATAQTKKAMLVGKEFSPEYLRVINDDGRHNKKYFAHQYDTHRADRGWGGVLWSSYGTIIKELQTRQWDRTVNLFAEFPVHAFGYNWTASNRLAGERLAGYIDAVITKYRGMGRQCEKVILVTHSMGGLVARAACKLSGADNKVLGVIHGVQPANGSPAGYWRMKGGFERPHTIPETDPMHWLKTPKRAAAHKWNTLVTKGVEFAPGISFGKGNITAWVLGTDGREVTALLGNMPGGLQLLPNKRYRDNHGCAQWLVLRDESGKRRNLPKSDPYKEIYRAKDVYWRLVNPEWLNPGEKVKSNKKYRSKTSWINYGEYLTEAESFHDALGGKVHPNTYQFYSTGIASPDRVVFTRMRDTLRSKGKRIIDMVKGDLLGKGVGAAVDAARGELTKPVAGAAKTTLAKPFAGGSLTEYVLHPSKLVTAAKGLAGAAKQVPGAMAEAAKGLPNALPRIASGMPKAIGINAAKKAATTAIGLVVRDDKRFIDRGGYRDKVDESDLLVFKENGSPAEVAFLITLETPDGAGDGTVPESSAKALKLGANRTFAIGDVDGNEGKFVEKKAPRTKPQIPPDFDEGWFDRGHEPIYKTRSATHITVTAIENMVRELGRKALGLH
>NC_007517.1|WP_004514000.1|321536_322541_+|hypothetical-protein
MKTVFRRALLVITATILTVSFTACKGSAGNGSDHKEPGKGAQKGMNTYNIGRFSIDVPTEMKEAGRTHEFRYAEIEEFLWPKNVDREEARKEAWARRIAEINSNRPPRGIKKIIVETKESLSVGKWSKGVLYYGNDMSSKDGFWMIMADYGQVGAIFIIKGLIEYEEPMFDDLLEIARNYEPMKQDKVDSFHTAYGNITLPYLEQESSYVRFEGHPLDLMLEIEMTETNNVEESGPVERLAAAISTNFAPTVDVKKIRARKKNVAGLEGEELVVRLTDGGESELHFGWEYAGKQDSGEYPLIQIEMESPDGRVEEKLKVWDAILGSMKSLYKGK
>NC_007517.1|WP_004513999.1|320789_321503_+|DUF4150-domain-containing-protein
MSATVIVNGQTVVHKDSGGVLTTGPDVCLTPMGPSVVPIPYTNIAVSADTSQGSTSVAMDSNPIMLKGSVFSKSTGDEPGKVGGVSSGITKGKAKFVNYSSDVFADGKPVCRRLDPMVSNLSAAGNTPPAPLQQGNARARGKQAQGHLLSVALVFEHPDVVTGRTTQPLVDLKYSLNGPKTITVAKSEPYTGIQEYVPQGGYALEFDRNDLKEKLTERSVSEKQSSKGAAFRNHKTS
>NC_007517.1|WP_004513998.1|319622_320759_+|3-oxoacyl-ACP-synthase
MASQSRNQPDKTVTDRVVITGIGTVTSLGCSQWSTALALRFRKSSWCEHETVLVADDPYGAVLRGATISRIPEEIISPELDGAERAEALFHPALKECMAGLSIAEQKRLVCRIDNFIDYEQHLFPSLLQEAFPGLSLEHGQKPIELGRCSLFERIIQAGGELLAGNAERILVGCVDSLCATSWLMSVCDEDVLKDSLTPEGIIAGEAAGAVLLEREAAARRRNAPVLAILSSWGRGTEPNLWHGPIPSTGRGLTDAFLEAISPHGDGGKGVVTVIADLNGDRHRALDWAYTEGRIFIDGDREPELRHPAFIAGDCGKATGALLLADALGRFAFHPGFRGTLALSTSDESGARRVICLEHGDHEERKGFIEQLRAQLAG
>NC_007517.1|WP_004513997.1|317491_319621_+|type-VI-secretion-system-tip-protein-VgrG
MDILNLFNNSSSATFLFEVSGSAADMSVVSFTANEWMSLPYSVSVAFATPYGIESFDDIIGSEALLTIINKDLLAGGEDRYFHGIVRRLERIGSSSNNYCLYEAEIVPAVFQLSLRKNSRIFQNTMTQDIVKQLLEESGITSDRYRFALQNKERLRKFCVQYRETDLDFVTRLLEEEGMFYFFEHYSDKHVLVISDSSVVHVPINGNPSITFNSNGGMVAETESIYGFTSSQRMTSEVFVHRNFNFKNPSVDMTAKASDSQESKREIYEYPALHVTQERGSALARAHREGLKTMQKQGHGQSSSCRLTPGYNFALIGHDSASLNIEYLIVDVSHSGTQPQSLEEMSQGPFSYGNSFTVIPATTPFRPTATRQKPIVKGIQTAIVVGPKGEEIYADEYGRIKVQFHWDREGRRDEKSSCWLRIGQTWSGNGWGMINIPRIGDEVLVDFIDGDPDRPIIVGSVNNAESPALFSLPANKTQSGIRTRSYPNGGRDNYHELRFEDKKGSEEIYLQSEKDWNILVKNDKTQNVEHDEALHVANNRLKTVGVDQMVQVGANHTEIIGANKSISVGSNKTETVGLNSAETVGLAKELTIGGLYQVSVGGVMNETVIGAKAEEVGVTKAVLVGAHMTEKVAGNRSLTVGQNLSATVSQNTTVKAKAIVLEADDEIIFKTGSSTISLKSSGEIVVTGATITEKASGEIVIKGARTSVN
>NC_007517.1|WP_004513996.1|316523_317402_+|peptidoglycan-binding-protein
MYREKSKYSKLEGPLSNVNLNLTSARNQILFSILGKPRIDGMYGEKDGPLNNPQLEKLMVRGVDVGPFKVNGLGLAVESLKTVMADISKQHKDIYDRLSQEGMLVVRYQRPTAKKPIGCPNRPISNHSWGTAIDLKIDGLLDGRGDNKSQHALNVIAPIFNKYKWYWGGTFPTEDSMHFEVSKEKLLEWHNAGLLGPISKRLPEAKIPETTRPASTSSSSRHRSMFDWLQKGDRGPKVVQLQKALKSRGYNLKSDGVFGKKTETALQDFQRKQGLPDNGIVGPKAAAYLLFF
>NC_007517.1|WP_004513995.1|315610_316501_+|nuclear-transport-factor-2-family-protein
MRFIGNLITVISVLFLATTSFGADISESDVKIFLNDWLAAQNKGSYPDYAALYSESFVGIKRSGKSMRKFDHDSWLKDRKTMFKKKMLVAANSPEITISGTTALVKFEQTWESGTYKDKGYKVLDLSLEDEKLKIVREEMLFSIVDTKFSSAFTRFNKDCKNKFSDIEEGQDMPIICNGPYKYKIEINYSACCEYVQVSDNKNFVLDLPAQIISTVTNRVLEWRLANGKPFAVILKLDKYKGDLALDAKKVKEVLLIKGLKKFEDINYEVDIKGQSNPNLEARSLADQSYMRLLQK
>NC_007517.1|WP_011365646.1|314161_315238_-|IS5-like-element-ISGme1-family-transposase
MRGAETKTEALFCYLSPESYVPKDHPLRSIRAMVDKALAELSPQFEAMYSHTGRPSIPPEQLLKALLLQALYTIRSNRLLVEQISYSILFRWFVGLALDEKVWDHSSFSTNLERLIDTDVARLLLAKVVEQARRAKLLSDEHFSVDGTLIEAWASIKSFRPKDGPKPPVGRNTERDFHGEKLKNDTHASTTDPDARIARRSSGKEAKLSYHGHALMENRNGIIVDARITHATGTAERDTAVEMIADVAGNKRITMGGDKGYDTKECVKDLRALKVTPHIAQNTANRRSAIDGRTTRHEGYKTSLRIRKRIEEAFGWLKTVGNLRKTRHRGIAKVDWYFTMAIAAYNLVRLRNLGTKTA
>NC_007517.1|WP_004513599.1|313582_313954_+|hypothetical-protein
MRTDVAGLSKLIALPFPPKAAWWRIVEREGSGAMGPADWELMAVVQFSSQDVEAIISKSENQRSDPPENMAAGSPAMSEILRDHGPVGERLYGADPFVKSPLLEGFFARVKGANKLLIYLSTC
>NC_007517.1|WP_004514005.1|330004_331471_-|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552
MRRLNPVAPLIALAAAATLFVLGGCAPEKAQPVKTVQIPDGEVDPAVWGKAYPTEYEMWKKTEEPEPPGKSKYKRGFDADHVTYDKLSEFPYMALLFNGWGFGIAYNEPRGHANMVRDQLEIDSARLKSGGVCLTCKTPYAPKLEKEMGIDYFKTPFKDVLAKIPEKHKTLGVACIDCHDNKDMSLRISRGFTLGEALKKLGVDQAKLSRQEMRSLVCAQCHVTYNIPKDADKKSIGVYFPWQGSKMGNISVENIIKQIRSDASVGEWTQTVTGFKLGFIRHPEYELFSNNSVHWKAGAACTDCHMPYTRVGAFKVSDHRVMSPLKNDMKACIQCHTEKPEWLRDQVIAIQDRTVSLMLRSGYATATVAKLFEKAHAAQAQGKQIDKALYDRAKDLYEEAFYRCVFIGAENSVGFHNPTEAMRVLGDATAFATKAEALLRQALAKAGVDVPLTVNLELNKYLDQRGEKKLTFDPKVEIKDPYGVQVRF
>NC_007517.1|WP_004514006.1|331482_331944_-|cytochrome-c-nitrite-reductase-small-subunit
MGLPGTGNQAIYLAIGVIVAAVALFVLFGPPKLLAKSDTPDFCVGCHPMENEYEAWIHTGAHRRVKCVDCHLPNENLAVHYIWKSIDGAKDAIFFYSGHVPEIIRLSKHGEEVLQKNCVRCHDTTVTHIDTERQCWKCHRRVSHTRSGAMETL
>NC_007517.1|WP_004514007.1|332234_333692_+|ammonia-forming-cytochrome-c-nitrite-reductase-subunit-c552
MLMSNVKRWAAVTAFTAMAAVGTGCAPKKVEQDKSASVADGTIDPAGWKKAYPAQYELWKKTEEPTPTGKSRYKKGYDEDGVFYDKLDEYPFLALLYNGWGFGVEYKEPRGHAYMIHDQFEVDPARLKAGGSCLTCKTPYAPELQQRLGKDYFSKPYKEVHAQIPKEHQMLGVTCIDCHNGSDLSLKISRGFTLGKALEKLGVDRAKLSAQDKRTLVCAQCHVTYAIPKDGNMKSTDVYFPWDGSTYGGITIENIIKKLRSSPANGEWTQGVTGFKLAFIRHPEFELFSNNSPHWQAGVSCADCHMPSTTAGNQKVSDHRVMSPLKNDLKACAQCHTETPDQLRGKVYAIQDRTMSRFIRTGYATATVAKLFEMTNKAEAQGKQIDKTLYAQAKDHYEEAFYRVVFIGAENSVGFHNPTEATRVLEDAAMHAGKADGLLRQALAKAGVTVPAKVDLELEKYVNNRGSKKLMFKPEHEIKDPLAGK
>NC_007517.1|WP_004514008.1|333764_334772_+|4Fe-4S-binding-protein
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPIGALASTKLWLATGTVNPVHPAALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALALSAFLDAPYWAVSDVKMLHFFTRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGCSRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLLFVAGIGTGMATGNWHSSLSADDYRRLIPMVPYLSH
>NC_007517.1|WP_004514009.1|334860_335310_+|PAS-sensor-domain-containing-protein
MPDTTNDKLLRLIAEGVPDAVIFADREGIVRIWSPGAERMFGFTAAEAVGQSLDLIIPENLRARHWEGYRRVMETGETHYGTKLLSAPALCSAGGRISTEFSMALVRDCEGAMAGSGAIIRDVTERWQKEKAMKERLAELERHEAERNG
>NC_007517.1|WP_004514010.1|335399_335927_+|HPP-family-protein
MKRRIVQLPRKMRGRGGRPSSPPLSLKYAIWGVLSSTVGILAIFAATRMAGHPYLIGSFGASAVLLFGAPDATFAQPRNLIGGQLLSAAVAVVVVACGGSGPVAIALAVGLANLLMYVTRTVHPPGGAIALLGVQGHVGASYLIDPILVGVLILLTVALFTNNIVHHRQYPKYWW
>NC_007517.1|WP_011365649.1|335989_337105_+|bifunctional-molybdenum-cofactor-guanylyltransferase-MobA/molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB
MDIRPLSDVAGVILVGGRSRRMGRDKALIPLGGKPLVERVIDAFRPLFERILLVGDRGERFASYGLPVFPDIHPGSALGGLYTGLVRAGTPHVFVSACDVPWPDPRVIARLCSLREGFDVVVPRTVGGSEPLFAVYGTGCLPAMERMLREGNYRIYDFYPEVRTRYVEQAELADLVTPARTFVNVNTPEEFETIRNREEGMAIKAVSFVAKSGTGKTTLLEKVIAELKGRGYRIGVIKHDAHRFDIDHPGKDSHRLAAAGADTMLIASPEKLALVKKYDESPPLDELLATYFGDVDIVLTEGFKKSSLPKIEVHRMERSATLLCRGEEHDPTLVAVASDAALALDVPVFDLNNPAQVADFVERTFLAAGAA
>NC_007517.1|WP_004514012.1|337130_338111_+|GTP-3',8-cyclase-MoaA
MKLVDSHGRRINYLRLSVTDRCNLRCRYCMPAEGVEMLSHGEILSYEELSRIARAAVAIGIEKIRITGGEPLVRRGIVPFLAGIAALPGLRQLVLTTNGILLPEMAADLRRAGVQRLNISLDSLKPETFRDITRTGNVERVLAGIDAAVVAGFPPPKINMVVMRGVNDDEVVDFARLTLDHPYTVRFIEYMPATREENWQRLCIPAQEVLDRIAASHELEPVERGAMAGPSRDFRIRGAVGTIGVISAVSGHFCGECNRIRVTSTGMAKSCLFSDEGLDLKPFLGENAPPVLEDALRRLVGCKPARHGMDGEKVEHAAFSMAKVGG
>NC_007517.1|WP_004514013.1|338212_338653_+|MOSC-domain-containing-protein
MSAKVIAVCISENKGERKTPVASVELRENHGIVGDAHAGEWHRQVSLLAAESIEKMRKMGLDVDSGDFAENITTEGIDLPALPVGTRLAVGETLLEVTQIGKECHTRCAIYHQAGDCVMPKEGIFARVITGGVVRPGDPIAVVRGG
>NC_007517.1|WP_004514014.1|338882_339074_+|hypothetical-protein
MCGSKHHDKHLCSLKSSGEPHRPGTARVECGHCGARTDDPGKVCEPITRPAIGWFSNGSDYLD

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Crispr_ID: NC_007517_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007517_3

1195048-1195947

TypeI

NA:I-C

Consensus_repeat	Method
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	CRISPRCasFinder
GTAGCGCCCGCCTACNTAGGCGGGCGAGGATTGAAAC	CRT
AGGCGGGCGAGGATTGAAAC	PILER-CR

12 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_007517_3

>merge|NC_007517|3|1195048-1195947|CRISPRCasFinder,CRT,PILER-CR
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACACTATGCGCTCCACTTTGGCCCTGATGTTGGCCGTGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACCGCCAAATCCGCCGCGCTCCACTCCCGGCAGAAGTTGTCGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACCAAGTCCGACTTGAAGATTTGTACTGTCGGCGCCGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACACCATCACCCCAGGGATCGGCACGGCCCGCATCGGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACTTGGTGCCCCAGGAAGAGTGGAAACCGCTGATCAGCGTCCGGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACTCGACCAACACCCCCGGCACGGTCATGTCGAAGGGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACGACACCGGCCTCGACGGGTGGGACGCCGCCGCCTGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACGGGAGGGACGGTGATATCGTGCAGGGAATACCAAGTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAACACCTGATGCTGCCCCTGCGGTCTGCCGTGCGCGGGTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAACAGGTCATTGGACCGGGCGAAGATGCGGCCCTGAGTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAACGGAATCAGTTCGCCGCGTTTTGTCCGAAGGTTAGTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAACACACAGCCTCTCAATATACCGATATCTCCTATTTGTAGCGTCCGCCTACGTAGGCCGGTGAAGCAACAGAG

>NC_007517|3|3|1195048-1195947|CRISPRCasFinder
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACTATGCGCTCCACTTTGGCCCTGATGTTGGCCGT
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	CGCCAAATCCGCCGCGCTCCACTCCCGGCAGAAGTTGTC
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	CAAGTCCGACTTGAAGATTTGTACTGTCGGCGCC
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACCATCACCCCAGGGATCGGCACGGCCCGCATCG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	TTGGTGCCCCAGGAAGAGTGGAAACCGCTGATCAGCGTCCG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	TCGACCAACACCCCCGGCACGGTCATGTCGAAGG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	GACACCGGCCTCGACGGGTGGGACGCCGCCGCCT
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	GGGAGGGACGGTGATATCGTGCAGGGAATACCAA
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACCTGATGCTGCCCCTGCGGTCTGCCGTGCGCGG
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	AGGTCATTGGACCGGGCGAAGATGCGGCCCTGA
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	GGAATCAGTTCGCCGCGTTTTGTCCGAAGGTTA
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	ACACAGCCTCTCAATATACCGATATCTCCTATTT
GTAGCGTCCGCCTACGTAGGCCGGTGAAGCAACAGAG

>NC_007517|3|1|1195048-1195947|CRT
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACTATGCGCTCCACTTTGGCCCTGATGTTGGCCGT
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	CGCCAAATCCGCCGCGCTCCACTCCCGGCAGAAGTTGTC
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	CAAGTCCGACTTGAAGATTTGTACTGTCGGCGCC
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACCATCACCCCAGGGATCGGCACGGCCCGCATCG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	TTGGTGCCCCAGGAAGAGTGGAAACCGCTGATCAGCGTCCG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	TCGACCAACACCCCCGGCACGGTCATGTCGAAGG
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	GACACCGGCCTCGACGGGTGGGACGCCGCCGCCT
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	GGGAGGGACGGTGATATCGTGCAGGGAATACCAA
GTAGCGCCCGCCTACATAGGCGGGCGAGGATTGAAAC	ACCTGATGCTGCCCCTGCGGTCTGCCGTGCGCGG
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	AGGTCATTGGACCGGGCGAAGATGCGGCCCTGA
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	GGAATCAGTTCGCCGCGTTTTGTCCGAAGGTTA
GTAGCGCCCGCCTACGCAGGCGGGCGAGGATTGAAAC	ACACAGCCTCTCAATATACCGATATCTCCTATTT
GTAGCGTCCGCCTACGTAGGCCGGTGAAGCAACAGAG

>NC_007517|3|1|1195065-1195876|PILER-CR
AGGCGGGCGAGGATTGAAAC	ACTATGCGCTCCACTTTGGCCCTGATGTTGGCCGTGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	CGCCAAATCCGCCGCGCTCCACTCCCGGCAGAAGTTGTCGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	CAAGTCCGACTTGAAGATTTGTACTGTCGGCGCCGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	ACCATCACCCCAGGGATCGGCACGGCCCGCATCGGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	TTGGTGCCCCAGGAAGAGTGGAAACCGCTGATCAGCGTCCGGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	TCGACCAACACCCCCGGCACGGTCATGTCGAAGGGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	GACACCGGCCTCGACGGGTGGGACGCCGCCGCCTGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	GGGAGGGACGGTGATATCGTGCAGGGAATACCAAGTAGCGCCCGCCTACAT
AGGCGGGCGAGGATTGAAAC	ACCTGATGCTGCCCCTGCGGTCTGCCGTGCGCGGGTAGCGCCCGCCTACGC
AGGCGGGCGAGGATTGAAAC	AGGTCATTGGACCGGGCGAAGATGCGGCCCTGAGTAGCGCCCGCCTACGC
AGGCGGGCGAGGATTGAAAC	GGAATCAGTTCGCCGCGTTTTGTCCGAAGGTTAGTAGCGCCCGCCTACGC
AGGCGGGCGAGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007517.1\|WP_004513733.1\|1198305_1199208_-\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|236725
NC_007517.1\|WP_004513736.1\|1201506_1203555_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|236712
NC_007517.1\|WP_004513727.1\|1192608_1193445_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NC_007517.1\|WP_004513734.1\|1199217_1200981_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NC_007517.1\|WP_004513728.1\|1193441_1194476_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_007517.1\|WP_004513735.1\|1201009_1201480_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
NC_007517.1\|WP_004513241.1\|1186582_1187266_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_007517.1\|WP_004513244.1\|1190025_1190565_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NC_007517.1\|WP_004513243.1\|1189035_1189890_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_007517.1\|WP_004513726.1\|1191983_1192598_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_007517.1\|WP_004513737.1\|1203551_1203887_-\|anti-sigma-factor-antagonist	unknown	unknown	gnl\|CDD\|224285
NC_007517.1\|WP_004513242.1\|1187262_1189023_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_007517.1\|WP_004513729.1\|1194576_1194870_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007517.1\|WP_011365646.1\|1190734_1191811_-\|IS5-like-element-ISGme1-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_007517.1\|WP_004513731.1\|1196660_1197752_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_007517.1\|WP_004513732.1\|1197748_1198285_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237396
NC_007517.1\|WP_004513739.1\|1205545_1208506_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NC_007517.1\|WP_004513738.1\|1204134_1205553_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_007517.1\|WP_004513240.1\|1184265_1186434_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_007517.1\|WP_004513730.1\|1196150_1196654_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380313

Protein	Function_ID	Function_description	E-value
NC_007517.1\|WP_004513733.1\|1198305_1199208_-\|chemotaxis-protein-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	5.09865e-121
NC_007517.1\|WP_004513736.1\|1201506_1203555_-\|chemotaxis-protein-CheW	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
NC_007517.1\|WP_004513727.1\|1192608_1193445_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	9.20395e-21
NC_007517.1\|WP_004513734.1\|1199217_1200981_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.32845e-126
NC_007517.1\|WP_004513728.1\|1193441_1194476_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_007517.1\|WP_004513735.1\|1201009_1201480_-\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	1.10168e-72
NC_007517.1\|WP_004513241.1\|1186582_1187266_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.32142e-110
NC_007517.1\|WP_004513244.1\|1190025_1190565_+\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000380707
NC_007517.1\|WP_004513243.1\|1189035_1189890_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.99586e-157
NC_007517.1\|WP_004513726.1\|1191983_1192598_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.96501e-34
NC_007517.1\|WP_004513737.1\|1203551_1203887_-\|anti-sigma-factor-antagonist	gnl\|CDD\|224285	COG1366, SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms].	7.80037e-05
NC_007517.1\|WP_004513242.1\|1187262_1189023_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_007517.1\|WP_004513729.1\|1194576_1194870_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.88289e-28
NC_007517.1\|WP_011365646.1\|1190734_1191811_-\|IS5-like-element-ISGme1-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.01495e-26
NC_007517.1\|WP_004513731.1\|1196660_1197752_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NC_007517.1\|WP_004513732.1\|1197748_1198285_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	1.63221e-84
NC_007517.1\|WP_004513739.1\|1205545_1208506_-\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.31683e-42
NC_007517.1\|WP_004513738.1\|1204134_1205553_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	7.76686e-141
NC_007517.1\|WP_004513240.1\|1184265_1186434_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.43768e-59
NC_007517.1\|WP_004513730.1\|1196150_1196654_+\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	2.42784e-49

>NC_007517.1|WP_004513729.1|1194576_1194870_+|CRISPR-associated-endonuclease-Cas2
MWVVVCYDVNTETREGRRRLRRVAQACKNYGQRVQKSVFECQVNEMKFEDLRRKLLREINKEQDNLRFYRLTEPRENHVETHGLTRTIFFDDEPLIV
>NC_007517.1|WP_004513728.1|1193441_1194476_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKQILNTLYVMTQGAYVCLDHETVKVEVKGALQMQVPLHHLGAIVTMGNVMMSPFIMARCAEDGRALVILDRNGKFKCRVVGKTSGNVLLRQTQYEAVRDRERSAAIARNMVAGKVKNARQILMRGARETTDADESAVLRKAGDTLADALFHLKDATDIDHVRGLEGEAANAYFQVFDRMVKEEERPAFRMNGRNRRPPLDPMNALLSFLYTLLLNDCISAVEGVGLDSQMGFLHVLRPGRPSLGLDIMEEFRAVLADRLALTLINRKQITEKHFEVRPGGATYLDDAGRKEVIMAYQKRKQDEFHHPVLDQKVPFGLLPHVQARLLARHLRGDLEQYTPVLYS
>NC_007517.1|WP_004513727.1|1192608_1193445_+|Bro-N-domain-containing-protein
METKLVVFQSKEIRRLLVDNVWFFAVVDVIAALTDSDKPRDYWYRMKKRELDASGIELSTFCRQLKLESSDGKKYLTEMASTEGLFRIIQSIPSPKAEPFKRWLAKVGYERVQEIEDPELATKRIRELYKAKGYSEAWVEKRMRGIAIRAELTEEWKNRGVKGEPEYAILTAEISKAAFGMTPGEYKQFKGLGRENLRDHMTDLELIFSMLGEAATTEIARKQDAQGFPENKVAAHKGGRIAGEAREKLEVETGERVVTSENFLVEPESRKRLKGKKP
>NC_007517.1|WP_004513726.1|1191983_1192598_+|CRISPR-associated-protein-Cas4
MNEPTDPIMISALEHYSYCPRQCALIHVEQVWGENLYTMRGRDVHENVDMESSHDVAGIRYERALPLWSKRLNLIGKADLVEFHGETPYPVEYKSGRHRDGRHEALQLCAQAICLEEMFGVAVEKGALFWHGSRERREVVFTDVIREHVEKAAEGVFALIAQSTVPPPVNDKRCTHCSLKESCLPAVVAEKDRSRRVARELFEI
>NC_007517.1|WP_011365646.1|1190734_1191811_-|IS5-like-element-ISGme1-family-transposase
MRGAETKTEALFCYLSPESYVPKDHPLRSIRAMVDKALAELSPQFEAMYSHTGRPSIPPEQLLKALLLQALYTIRSNRLLVEQISYSILFRWFVGLALDEKVWDHSSFSTNLERLIDTDVARLLLAKVVEQARRAKLLSDEHFSVDGTLIEAWASIKSFRPKDGPKPPVGRNTERDFHGEKLKNDTHASTTDPDARIARRSSGKEAKLSYHGHALMENRNGIIVDARITHATGTAERDTAVEMIADVAGNKRITMGGDKGYDTKECVKDLRALKVTPHIAQNTANRRSAIDGRTTRHEGYKTSLRIRKRIEEAFGWLKTVGNLRKTRHRGIAKVDWYFTMAIAAYNLVRLRNLGTKTA
>NC_007517.1|WP_004513244.1|1190025_1190565_+|hypothetical-protein
MTYNPDIHHRRSIRLREYDYSSGGVYFVTMCVQGRECLFGGVVDGVMQLNEAGRMVVGTWHGLAERFPNMTTDEFIVMPNHVHGIMVVQENEIGGGVGAIHELPLQVARRNMVIPKIIGYFKMNTAKQINIMRGSAGIPVWQRNYYERVIRDEREFTSIREYIRCNLLKWADDEENPDP
>NC_007517.1|WP_004513243.1|1189035_1189890_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTIQNRYDFVLFFDVKDGNPNGDPDAGNLPRIDPETGHGLVTDVCLKRKVRNYVQLDKELSQGYDIFVKEKAILNNLIDEAHEQENVKAKEKGEKTEAARQFMCGKYFDVRTFGAVMSTGKNAGQVRGPVQLTFARSVDQIVPLEHSITRMAVATPAEAEKQDGDNRTMGRKFTVPYALYRCHGFISAPLAAQTGFSEEDLELFWQSLVNMFEHDRSAARGQMSARKLIVFKHDSKMGNAPAHHLFDLVSAEASETPVRSFDQYDICVPTQENMPTGVTVVEKL
>NC_007517.1|WP_004513242.1|1187262_1189023_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALHGLYVRKQDELPPEGFEQKEIPFLIVLNGDGTFGDFQDTRNRSGKKLIARQFRVPKDSGRSGKNAWQSANLLWDHYGYVLCWPKSDSDADKEMARKQHGTFVERVGELAAAYPQDKGVQAVMRFLKSDEREKLLEHPAWEECRKIPGCNLSFRLSDELSLVCESDNVREFVAKSSAQDDDEDDSTTGDVEGICLVTGESATVARLHPRTPIIGAKSNAKIVSFQKNMGFDSYGRQQSYNAPTSKGAAFAYTTALNHLLAKESRQKLLIGSDTMVFWAGEKHRVEDLFADLFGEPAKENLDQTTQAIRSLYTAPQAGTPPLDHDLTPFFVLGLAPNAARIAVRFWHAGTVGETARHIRQHFDDCAVVHGPNQPEYLSLFRLLVSTAMQGKSENIPPNLAGDLMKSILAGTPYPQSLLSAAIRRCRAEREITYPRVSVIKAVLARGTRYYTSNEQEVGMALDVTNTNPGYRLGRLFAVLEKIQEEASPGINATIRDRFYGAASGTPVAAFPHLMKLKNHHLAKLENRGRAVNLEKIVGEIMDGLDDFPTHLSLQDQGRFAVGYYHQRQDFFKKNETTTNVNP
>NC_007517.1|WP_004513241.1|1186582_1187266_+|type-I-C-CRISPR-associated-protein-Cas5
MDMASTKSRMLRLKVWGDNACFTRPEMKVERVSYDVMTPSAARGVLEAILWKPAIRWQVDRIDVLKPIRWESVRRNEVGSVMSPRTNGLFIEEQRQQRAGLFLRDVAYTIHAWFEMTVPPDERNNVIKFQEMFICRASKGKCFNQPYLGTREFSAGFELIPHDQSLPEPIVETRDLGFMLYDLCHDTSRDEGHVHTCTDGCRPSFFRAALKDGRMMVPARDSEEVRR
>NC_007517.1|WP_004513240.1|1184265_1186434_+|CRISPR-associated-helicase/endonuclease-Cas3
MRERPVAHLAEDGRVHGLEEHLCGTAYFAAAFAGEFGCAGWGRLAGIWHDLGKYSHEFQRYILDDGPRTDHSSAGALYAVQRLGKLGRVIAYLVAGHHAGLLDWADNTGSNLERRLTSTDLLARVVLSELPPNLLEQQIPAERPKPPATDLTASLWLRMLFSCLVDADFLDTEAFFNPAPVGQRSRFPTIEELLPLFDAYMADKQATAFDTPVNRLRAEILRQSVGKAFHSPGFFSLTVPTGGGKTLSSMAFALNHARAHGKRRIIYVIPYTSIIEQTADQFREVFGDSVVEHHSNVARQDSDEEGQRLRLASENWDAPVIVTTSVQFFESLFASRTSRCRKLHNIVNSVVVLDEAQLLPPDFLNPILEALKELQKNYGTTVVICTATQPALGPHQSANFDFKGIPEITEIMDDPAKLHVKLKRTRIHKLRDLAPVSWDELAEELEWQDSALCIVNRRDDARTLWEKMPKGTIHLSALMCGAHRARKIAEIKERLRNREPTRVISTQLVEAGVDVDFPIVYRAAAGLDSIAQAAGRCNREGLLEWGEVFVFTPPSKIPAGHLQQAAGIGMRLLAEAESDPLSMERFEAFFREFYWMRGDRLDRENIIGLLRNDVGLRFSFRTAARKFQLIDESAQAPVIVQFENDELLSLLERQGPERWLLRKLQRSVVNLPRYLHNRLLSEGAIRERCPGIFVQAHGALYHPDLGFCPDKSIVYEPDELIG
>NC_007517.1|WP_004513730.1|1196150_1196654_+|nitroreductase
MEVLEAIYGRRSVRQYTSEPVTREEVLEIVQAGSWAPSGLNNQPWRFAIVSDDEKRRALAGFTKYRHILEGAPVSIAVFCDRAAMYNDTKDHQSVGACLQNMLLAAHALGLGAVWLGEILKSADKVRELLALPESLELMAVVAVGRPAEFTRTGDRKDLDELIVGEY
>NC_007517.1|WP_004513731.1|1196660_1197752_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MSTQPIKVLIVDDSALIRSLLTDIINSQTDMEVVGVAPDPLVAREKIKALNPDVLTLDVEMPRMDGLVFLEKLMRLRPMPVLMVSSLTEKSSFLTLRALELGAVDFVTKPKIDISRGMQEYAREITDKLRVAAKARVRQPPHVHLSVERKNTADAVLPMEHRTFSSTEKIIVIGASTGGTEALKSFLVAMPADSPGILITQHMPEAFTRTFAQRLNSLCRISVKEAEHGERILPGHAYVAPGNRHLLLARSGANYVVELSDGPPVSRHRPSVDVLFRSAANRAGRNAVGIIMTGMGDDGAAGMLEMREAGAYTFAQDEKSCVVFGMPKEAIARGGVDEVAPLGEMPRRLFGWLESQGNRAFRV
>NC_007517.1|WP_004513732.1|1197748_1198285_-|chemoreceptor-glutamine-deamidase-CheD
MHTGRYFAKNSYYDRTFNKQAVKILPGEYHATDSDTMIVTVLGSCVSVCIRDRLSGIGGMNHYMLPGEAGTDESPSPRYGTHAMELLIDHLIQLGGRLPYLEAKVFGAGRVINGVTDVGERNAEFALRYLEEREIPVTAVDVGDIYPRKVYFAPATGRAFVRQIRTGSIDSLFIGESS
>NC_007517.1|WP_004513733.1|1198305_1199208_-|chemotaxis-protein-CheR
MPNHDIAPLTGTDADFPPRDLREFRFTDGDFARVRELIYRTAGIALSPVKRDLVYGRLARRLRVRGLTSFDDYLRIVESGDRQEREAFVNALTTNLTSFFREPHHFPILADHLKGLGGRRQLSIWCCAASTGEEPYSIAMTVVEQFGTFTPPVRILATDIDTSVLDRARQGIYRLDRIERLPREQVRRFFLRGDGKNAGLARVRPEAQKIITFRQLNLLDPQWPMRERFDAIFCRNVMIYFDKETQYGILKKFVPLLHPGGLLFAGHSESFHHAADLFQVRGKTVYAVRDGAPLPTGLRS
>NC_007517.1|WP_004513734.1|1199217_1200981_-|methyl-accepting-chemotaxis-protein
MKIKAFKDWKILSKILAISVATIVLIVSGIMFYVLPLVEKKLMAEKKDMVGSTVDTVVTLIGGYQEKVKSGELTEAEARKRAIDNIRKLRYDGNEYFWINTVEPVMVMHPIKPELEGKKLDDLKDPTGKAFFVEMAKVAREQGKGEVEYQWPKPGATAPSPKISHVQLVKEWGWVVGSGIYVDDVQKEVMTMKIQIIVATLICALVIFTFAYFVARRIRMALGEAITASEHIAAGDLTAAIEASSEDETGQLLRSLREMNDSLSHIVAEVRTGADSIASATEQISAGNADLSQRTEEQASALEETASSMEELTSTVKQNADNAQQANKLAVTASEVAERGGEVIGRVVNTMGAITDSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAAAAKEIKSLIEDSVAKVEDGSRLVEEAGETTREIVTSIKRVADIMAEISAASIEQSSGIEQVNTAITQMDDVTQQNAALVEEAAAAAEALEDQARSMVSTVSRFKLADGGRADTGAAPKTERKPAARVAPSARNTPAAKAAPKAKAANGYHKPAAPEHHEAELPKAVGYDDDWKEF
>NC_007517.1|WP_004513735.1|1201009_1201480_-|chemotaxis-protein-CheW
MDTPERTIPHEYLTFTLGAEEYGIDILKVQEIRGYDAVTRIANSPEFLKGVINLRGVIVPIVDMRIRFNLGTPTYDEFTVVIIMNVLNRVIGMVVDGVSDVVALEPEQIRPAPEMGSALDTRYLTGLGTVNGQMLILMDIEKLLSSSEMQLMDSAA
>NC_007517.1|WP_004513736.1|1201506_1203555_-|chemotaxis-protein-CheW
MTAPDHHNTSIDLDRFNAVFFEECAEHLADMEHILVALDPESPDSEELNALFRAAHSIKGGAGIFGFSDLTVVTHELESLLDKVRGNELRLTATMIDLFLEARDAIAMQLAGHGDGSPVDQAVIEDICRRLRGQIEGTAAVAEKSPSPQVLPTEPMTGFRRLEIVFSPDNDIFQRGVRLENLFNELAQLGDLSVKAEIPDAPPFEAFDPEVCHARWIFTLDTVVADEEIRDIFEFVAEREQLTISTRDEQATAAPSPVEEDIPAPASAPAEGAIVPMGRRAYDRDETAPGAFGRRGGEIESSIRVGVTKVDQLINQVGELVITQSMLAQMAGVLDPVLFESIHRGLLQLERNTRDLQQNVMSIRLVPISIVFSRFPRLVRDLAAKLGKQVELHTVGETTELDKGLIEKIADPLTHLVRNCLDHGLESPEARMAAGKDPVGAIMLRASQVGGRIVIDVMDDGAGLSREKILRKAAERGIPTGDAMTDEEVWQLIFAPGFSTAETVTDISGRGVGMDVVLRNVQALSGRVQVSSEPGSGTRVTISLPLTLAILDGLSVAVGGEKFIIPLNAIIESLQPKPEEIKSVNGRTVVHVRGEYLPLLPLHELFSLETSVTRPEEGITVLVDVEGEKAALLVDALLDEHQVVIKSLEANYRKVEGTAGATILGDGRVALILDVHALLRMR
>NC_007517.1|WP_004513737.1|1203551_1203887_-|anti-sigma-factor-antagonist
MPENAPGTLTIRLTGDWSMTGVTQQLLPLTEHLAALSGVHPQQVQPVIDMAEVALFDACGCQLLTILLRHLRLLGFSPVLANIPAELRGSIELLGFGHEFETMLDVTRGHA
>NC_007517.1|WP_004513738.1|1204134_1205553_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPDQQTFPILVVDDEEEILFTTSITLRSAGFPPVLTESDSRNVMGILARQEVALVLLDLYMPHLPGYELLKEITANHPEIPVIVVTAANEVGMAVECMKAGAFDYFVKPMEPPRLLATVRRALEMHSLRSQVNSLSSHILTGGLDNEEAFAPIITRSRKMHSIFQYLEAIAPSNQPLLITGETGVGKELIARTVHNISGCRGPFVAVNIAGLDDMVFSDTLFGHLKGAFTGADRQREGLIAKAAGGTLFLDEIGDLQPSSQVKLLRLLQEQEYYPLGADTPVHAAARVVVATNRDLKAIMADGSFRKDLYYRLSAHQVLIPPLRDRREDIPLLVDHFFDEAAASLSRQKPTIPPELACYLGTYAFPGNIRELRAMVFDAMARHEKGVLSLAGFREVIGNPRSPAETSPLPFIEGLREESGNAGRMPTLKEAEDALIAHALSIANGNQGIASAHLGITRQALNKRLNRKTADE
>NC_007517.1|WP_004513739.1|1205545_1208506_-|PAS-domain-S-box-protein
MRKITVNVIALNILFVIGATVITTFLFLAAMRDESERLAKVEQEQGIQTFWRLLRAKGTDFRIVDGKLMAGDYVLNGNFELPDMIQSIFGGTATVFMGDTRVATNIRREDGTRAVGTKLNGPAYDAIFRHNKPFRGEALIFGIPYFTAYDPIRNSRGEIIGVLYVGARKNEFHSRYEHYKVNVIAGAAVISTIFTVLAFVVLRDRKRHLEALQDNETKYRTLFESSSEGILLFDGVIFDCNEQLCRLFGSSRNEIIGRSPVHFSPELQSDGTPSAEKARHMLNTTLGGEAGIFPWQHRRQDGTLVDTEVSLKALTIQGRTVLQAVVRDVTEWEKAEESLRMIRLQQQAILDNIPDLVWLKDIESRFITVNAAFAQACGTLPADLVGKTDLDIWPSDLATLYREDDARVIASGKQVRTEEPLADVNGKGVWIETIKMPIYDEAGTVIGTTGIARDISERREAELKLRENEARLARAQQIAHVGNWEWDILNNSVQFSDELLRIFRIPPGQPNMTYETFLEAVHPDDRQAVNDTINATLHEQAPYGKTYRIICPDGEIRHLRAEGEVEFDAEGAPVRMQGVVKDITVSTLAEEALRESEARFREIFEQNEDAIILMARETLDIIDANRAAETLIGRDKESLNWLGPWSFIVPDDYNPFIAAIPPVDDTTPFHLNRIGVVRSDGTRLISSIWGKIIRLRDTEVVYCSIRDLTQRIRMEEEAQITHAHLIHTNKMASLGVLVSGIAHEINNPNTFIQGNASLIESFWRDTVPILDRHRTENGDFILGGLPVAEVERIFPRLLHGVKEGSRRISAIVNNLKDFAREDTAKAFVPIAVNNIVENAKMILSYQIHRYTDHFRMELAEGLPLARGKFQQIEQVVINLIMNALQALPGKDAGVTVSTSADPVASVVTISVRDEGEGMQWEVLERITEPFFSTKLEQGGTGLGLSISAAIIREHDGTLTFESTPGKGTTATVTLPLAYPAGERNHA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007517_3	3.7\|1195524\|34\|NC_007517\|CRISPRCasFinder,CRT	1195524-1195557	34	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	8401-8434	6	0.824
NC_007517_3	3.7\|1195524\|34\|NC_007517\|CRISPRCasFinder,CRT	1195524-1195557	34	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	513015-513048	6	0.824
NC_007517_3	3.7\|1195524\|34\|NC_007517\|CRISPRCasFinder,CRT	1195524-1195557	34	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	255748-255781	6	0.824
NC_007517_3	3.7\|1195524\|34\|NC_007517\|CRISPRCasFinder,CRT	1195524-1195557	34	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	312521-312554	6	0.824
NC_007517_3	3.6\|1195453\|34\|NC_007517\|CRISPRCasFinder,CRT	1195453-1195486	34	NZ_CP011506	Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence	14280-14313	7	0.794
NC_007517_3	3.6\|1195453\|34\|NC_007517\|CRISPRCasFinder,CRT	1195453-1195486	34	NC_011003	Burkholderia cenocepacia J2315 plasmid pBCJ2315, complete sequence	15149-15182	9	0.735
NC_007517_3	3.7\|1195524\|34\|NC_007517\|CRISPRCasFinder,CRT	1195524-1195557	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	224948-224981	9	0.735
NC_007517_3	3.4\|1195304\|34\|NC_007517\|CRISPRCasFinder,CRT	1195304-1195337	34	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	69280-69313	10	0.706

1. spacer 3.7|1195524|34|NC_007517|CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.824

gacaccggcc--tcgacgggtgggacgccgccgcct	CRISPR spacer
--caccgggtgatcgacggctgggacgccgccgtct	Protospacer
  ****** .  ******* *************.**

2. spacer 3.7|1195524|34|NC_007517|CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 6, identity: 0.824

gacaccggcc--tcgacgggtgggacgccgccgcct	CRISPR spacer
--caccgggtgatcgacggctgggacgccgccgtct	Protospacer
  ****** .  ******* *************.**

3. spacer 3.7|1195524|34|NC_007517|CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

gacaccggcc--tcgacgggtgggacgccgccgcct	CRISPR spacer
--caccgggtgatcgacggctgggacgccgccgtct	Protospacer
  ****** .  ******* *************.**

4. spacer 3.7|1195524|34|NC_007517|CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 6, identity: 0.824

gacaccggcc--tcgacgggtgggacgccgccgcct	CRISPR spacer
--caccgggtgatcgacggctgggacgccgccgtct	Protospacer
  ****** .  ******* *************.**

5. spacer 3.6|1195453|34|NC_007517|CRISPRCasFinder,CRT matches to NZ_CP011506 (Burkholderia pyrrocinia strain DSM 10685 plasmid p2327, complete sequence) position: , mismatch: 7, identity: 0.794

tcgaccaacacccccggcacggtca-tgtcgaagg	CRISPR spacer
tcgaccaacacacgcggcacggtcgctgccggtg-	Protospacer
*********** * **********. **.**. *

6. spacer 3.6|1195453|34|NC_007517|CRISPRCasFinder,CRT matches to NC_011003 (Burkholderia cenocepacia J2315 plasmid pBCJ2315, complete sequence) position: , mismatch: 9, identity: 0.735

tcgaccaacacccccggcacggtcatgtcgaagg	CRISPR spacer
tcgaccaacacacgcggcacggtcgctgcgggtg	Protospacer
*********** * **********..  **.. *

7. spacer 3.7|1195524|34|NC_007517|CRISPRCasFinder,CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 9, identity: 0.735

gacaccggcctcgacgggtgggacgccgccgcct	CRISPR spacer
agccacggcctcgacgggtggcaccccgccgagg	Protospacer
..*  **************** ** ******

8. spacer 3.4|1195304|34|NC_007517|CRISPRCasFinder,CRT matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 10, identity: 0.706

accatcaccccagggatcggcacggcccgcatcg	CRISPR spacer
ccgctgaccccggggatcggcaccgcccgcccga	Protospacer
 *  * *****.*********** ****** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

936567 : 945262

uncultured_Mediterranean_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004512995.1\|936567_937722_+	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	8.7e-22	31.1
WP_004512996.1\|937711_938743_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_004512997.1\|938788_939901_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.3e-91	47.4
WP_004512998.1\|939967_940288_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-12	46.9
WP_004512999.1\|940319_941921_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.2e-05	24.4
WP_004513000.1\|941930_942839_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.0e-43	40.0
WP_004513001.1\|942857_943454_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004513002.1\|943525_945262_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.0e-82	32.7

DBSCAN-SWA_2

1239804 : 1278307

Escherichia_phage(50.0%)

plate,protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004514801.1\|1239804_1240830_-\|transposase	IS21-like element ISGme4 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-83	48.2
WP_004513385.1\|1241344_1242049_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_004513386.1\|1242041_1242956_+	methylisocitrate lyase	NA	NA	NA	NA
WP_004513387.1\|1242952_1244398_+	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA
WP_004513388.1\|1244475_1245792_+	citrate (Si)-synthase	NA	NA	NA	NA
WP_004513389.1\|1245849_1247445_+	acetyl-CoA hydrolase	NA	NA	NA	NA
WP_004513390.1\|1247475_1248087_+	hypothetical protein	NA	NA	NA	NA
WP_004513391.1\|1248276_1248975_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_004513392.1\|1249211_1251128_+\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_004513393.1\|1251140_1251650_+\|tail	phage tail protein	NA	NA	NA	NA
WP_004513394.1\|1251649_1252456_+	hypothetical protein	NA	NA	NA	NA
WP_004513395.1\|1252472_1253510_+	hypothetical protein	NA	NA	NA	NA
WP_004513396.1\|1253511_1254546_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_004513397.1\|1254545_1255883_+	ATP-binding protein	A0A2D2W2A9	Stenotrophomonas_phage	2.0e-09	35.0
WP_004513398.1\|1255876_1256110_+	hypothetical protein	NA	NA	NA	NA
WP_004513399.1\|1256114_1256753_+	hypothetical protein	NA	NA	NA	NA
WP_004513400.1\|1256754_1257045_+	hypothetical protein	NA	NA	NA	NA
WP_004513401.1\|1257048_1258194_+	hypothetical protein	NA	NA	NA	NA
WP_004513402.1\|1258194_1259007_+	hypothetical protein	NA	NA	NA	NA
WP_004513403.1\|1259188_1259563_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004513404.1\|1259567_1260743_+	hypothetical protein	NA	NA	NA	NA
WP_004513405.1\|1260739_1264006_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_004513406.1\|1264018_1265527_+	hypothetical protein	NA	NA	NA	NA
WP_004513407.1\|1265808_1266765_+\|transposase	IS110-like element ISGme8 family transposase	NA	NA	NA	NA
WP_004513408.1\|1266830_1269893_+	hypothetical protein	NA	NA	NA	NA
WP_004513409.1\|1269959_1270922_+	hypothetical protein	NA	NA	NA	NA
WP_004513410.1\|1270977_1271706_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_004513411.1\|1271840_1274231_+	hypothetical protein	NA	NA	NA	NA
WP_011365774.1\|1274294_1275650_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004513414.1\|1275806_1276094_-	hypothetical protein	NA	NA	NA	NA
WP_004513415.1\|1276758_1277562_+	DsbC family protein	NA	NA	NA	NA
WP_004513416.1\|1277584_1278307_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1586275 : 1594667

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004511650.1\|1586275_1586551_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.9e-16	46.1
WP_004511649.1\|1586573_1586924_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_004511648.1\|1587091_1587850_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.1e-53	43.1
WP_004511647.1\|1587965_1588616_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.5e-34	50.0
WP_004511646.1\|1588650_1589631_+	sigma-70 family RNA polymerase sigma factor	A0A2I7SAT0	Vibrio_phage	6.2e-37	37.5
WP_004511645.1\|1589660_1590176_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.4e-32	42.3
WP_004511644.1\|1590775_1593394_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.0e-46	23.2
WP_004511643.1\|1593395_1594667_+	N-acetylmuramoyl-L-alanine amidase	Q0H257	Geobacillus_phage	6.8e-20	32.5

DBSCAN-SWA_4

1817956 : 1824973

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004511445.1\|1817956_1819414_-	RtcB family protein	A2RQD0	Archaeal_BJ1_virus	5.1e-112	44.3
WP_004511444.1\|1819515_1820061_-	HD domain-containing protein	NA	NA	NA	NA
WP_004511443.1\|1820171_1820495_+	peptide chain release factor-like protein	NA	NA	NA	NA
WP_004511442.1\|1820577_1821042_+	cytidine/deoxycytidylate deaminase family protein	A0A1D8ESY8	Mycobacterium_phage	9.1e-23	45.7
WP_004511441.1\|1821038_1821491_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_004511440.1\|1821494_1822607_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.5e-50	36.8
WP_004511439.1\|1822588_1823239_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.4e-29	37.5
WP_004511438.1\|1823279_1824482_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.8e-100	49.9
WP_004511437.1\|1824505_1824973_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.6e-35	53.3

DBSCAN-SWA_5

2532958 : 2589424

Escherichia_phage(40.0%)

integrase,transposase

attL 2577821:2577840|attR 2589985:2590004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011365646.1\|2532958_2534035_+\|transposase	IS5-like element ISGme1 family transposase	NA	NA	NA	NA
WP_148206094.1\|2534193_2534724_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041249152.1\|2534895_2535765_-	cache domain-containing protein	NA	NA	NA	NA
WP_011365997.1\|2536009_2536387_-	hypothetical protein	NA	NA	NA	NA
WP_148206095.1\|2536494_2538984_-	MMPL family transporter	NA	NA	NA	NA
WP_011365999.1\|2539016_2540075_-	repeat-containing protein	NA	NA	NA	NA
WP_011366000.1\|2540210_2541764_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	4.3e-32	29.3
WP_011366001.1\|2541910_2543245_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_011366002.1\|2543296_2544931_-	DUF1302 family protein	NA	NA	NA	NA
WP_011366003.1\|2545605_2546388_-	glucose 1-dehydrogenase	W8CYX9	Bacillus_phage	6.7e-10	45.5
WP_187148446.1\|2546457_2547276_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_011366005.1\|2547380_2548706_-	MFS transporter	NA	NA	NA	NA
WP_081431796.1\|2548738_2549461_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.5e-21	30.5
WP_011366007.1\|2551002_2551446_-	PaaI family thioesterase	NA	NA	NA	NA
WP_041249156.1\|2551513_2551984_-	ferritin family protein	NA	NA	NA	NA
WP_011366010.1\|2552506_2552689_-	hypothetical protein	NA	NA	NA	NA
WP_011366011.1\|2552712_2554680_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_011365616.1\|2554871_2556041_+\|transposase	IS481-like element ISGme9 family transposase	NA	NA	NA	NA
WP_011366012.1\|2556129_2557458_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_011366013.1\|2557623_2558439_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_011366015.1\|2559033_2559816_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_011366016.1\|2560314_2561190_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_011366017.1\|2561204_2562365_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_011366018.1\|2562439_2563345_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011366019.1\|2563530_2564307_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_011366020.1\|2564360_2566346_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011366021.1\|2566360_2567329_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011366022.1\|2567328_2568111_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_011366023.1\|2568176_2570255_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011366024.1\|2570328_2571558_-	thiolase family protein	NA	NA	NA	NA
WP_081431814.1\|2571612_2572467_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_011366026.1\|2572521_2574369_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004514801.1\|2575733_2576759_+\|transposase	IS21-like element ISGme4 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-83	48.2
WP_004514800.1\|2576755_2577550_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.2e-84	56.6
2577821:2577840	attL	NA	NA	NA	NA
WP_148206083.1\|2578047_2579079_-	hypothetical protein	NA	NA	NA	NA
WP_011366028.1\|2579355_2579748_+	hypothetical protein	NA	NA	NA	NA
WP_041249158.1\|2579762_2579945_+	hypothetical protein	NA	NA	NA	NA
WP_011366029.1\|2580078_2581260_+	plasmid replication initiation factor	NA	NA	NA	NA
WP_011366030.1\|2581249_2581591_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011366031.1\|2581669_2582980_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.2e-08	35.4
WP_011366032.1\|2583216_2584461_+\|integrase	site-specific integrase	G9L697	Escherichia_phage	2.5e-30	27.5
WP_041249159.1\|2584496_2584934_+	hypothetical protein	NA	NA	NA	NA
WP_011366034.1\|2585137_2585788_+	recombinase family protein	A0A1B1IWV2	uncultured_Mediterranean_phage	2.3e-32	42.6
WP_187148447.1\|2586503_2586704_+	hypothetical protein	NA	NA	NA	NA
WP_011366036.1\|2586947_2587427_-	HNH endonuclease	A0A2K8IF61	Lactococcus_phage	1.7e-16	37.3
WP_011365668.1\|2588200_2589424_+\|transposase	ISL3-like element ISGme5 family transposase	A4PE56	Ralstonia_virus	3.6e-119	55.4
2589985:2590004	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2681085 : 2689390

Streptococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004513248.1\|2681085_2682375_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.9e-158	65.4
WP_004513247.1\|2682522_2683953_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.1e-102	44.4
WP_004513246.1\|2683973_2684573_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	3.0e-18	35.7
WP_004513245.1\|2684672_2685740_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	2.8e-83	45.5
WP_011365668.1\|2685797_2687021_-\|transposase	ISL3-like element ISGme5 family transposase	A4PE56	Ralstonia_virus	3.6e-119	55.4
WP_004514764.1\|2687128_2687686_-	thermonuclease family protein	NA	NA	NA	NA
WP_004514763.1\|2687764_2689390_-	phosphoglycerate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	3.2e-30	30.1

DBSCAN-SWA_7

2826934 : 2880861

Acinetobacter_phage(16.67%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004514804.1\|2826934_2828188_+\|transposase	ISL3-like element ISGme6 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.2e-07	22.9
WP_011366061.1\|2828111_2828870_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_004514795.1\|2829239_2830160_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_081431798.1\|2830173_2830629_-	ATP-binding protein	NA	NA	NA	NA
WP_011365646.1\|2830721_2831798_+\|transposase	IS5-like element ISGme1 family transposase	NA	NA	NA	NA
WP_187148450.1\|2831956_2832703_-	AAA family ATPase	NA	NA	NA	NA
WP_011366063.1\|2832924_2833722_-	restriction endonuclease	A0A2H4J8H9	uncultured_Caudovirales_phage	1.5e-17	30.9
WP_004514654.1\|2834484_2835093_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004514653.1\|2835097_2836453_-	TrpB-like pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004514652.1\|2836617_2837418_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.5e-54	50.2
WP_004514651.1\|2837469_2838522_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.3e-68	41.9
WP_004514650.1\|2838518_2839088_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.1e-73	65.6
WP_004514649.1\|2839089_2840565_-	anthranilate synthase component I	S4VNU7	Pandoravirus	1.0e-51	31.9
WP_004514648.1\|2840811_2842764_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-109	36.4
WP_004514647.1\|2842902_2843172_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_004514646.1\|2843183_2843441_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_081431800.1\|2843468_2843594_+	DUF3387 domain-containing protein	NA	NA	NA	NA
WP_004514645.1\|2843787_2844042_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011366065.1\|2844029_2844359_+	type II toxin-antitoxin system PemK/MazF family toxin	Q332J9	Clostridium_botulinum_C_phage	9.4e-06	33.0
WP_004514643.1\|2844506_2844674_+	hypothetical protein	NA	NA	NA	NA
WP_004514642.1\|2844931_2845459_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_004514641.1\|2845489_2846440_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004514806.1\|2846499_2847669_-\|transposase	IS4-like element ISGme2 family transposase	NA	NA	NA	NA
WP_004514778.1\|2847871_2849263_+	MATE family efflux transporter	NA	NA	NA	NA
WP_004514777.1\|2849293_2850352_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_004514776.1\|2850521_2851484_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_004514775.1\|2851494_2852658_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_004514774.1\|2852851_2853418_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_004514773.1\|2853705_2853927_+	hypothetical protein	NA	NA	NA	NA
WP_011365652.1\|2854167_2855391_-\|transposase	ISL3-like element ISGme5 family transposase	A4PE56	Ralstonia_virus	2.3e-118	55.2
WP_004514812.1\|2855782_2856349_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_004514535.1\|2856420_2856594_-	hypothetical protein	NA	NA	NA	NA
WP_004514534.1\|2856705_2858073_-	TolC family protein	NA	NA	NA	NA
WP_004514533.1\|2858069_2861195_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.5e-100	25.4
WP_011366066.1\|2861198_2862347_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004514531.1\|2862589_2863897_-	nitrite/sulfite reductase	NA	NA	NA	NA
WP_004514530.1\|2864108_2866175_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.0e-57	26.7
WP_004514529.1\|2866288_2866726_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_004514528.1\|2866860_2867229_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_004514527.1\|2867336_2868971_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	7.9e-61	30.4
WP_004514526.1\|2869101_2869290_+	hypothetical protein	NA	NA	NA	NA
WP_004514525.1\|2869418_2869934_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	8.1e-12	30.5
WP_004514524.1\|2870080_2870326_-	hypothetical protein	NA	NA	NA	NA
WP_004514523.1\|2870549_2870657_-	hypothetical protein	NA	NA	NA	NA
WP_004514522.1\|2870656_2872096_-	insulinase family protein	NA	NA	NA	NA
WP_004514521.1\|2872114_2873599_-	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	4.7e-12	21.2
WP_004514520.1\|2873754_2874726_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_011366068.1\|2874722_2875457_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_011366069.1\|2875652_2875943_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.3e-27	60.4
WP_004514518.1\|2875952_2876249_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	2.3e-11	43.7
WP_004514517.1\|2876659_2878267_-	hypothetical protein	NA	NA	NA	NA
WP_004514800.1\|2879044_2879839_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.2e-84	56.6
WP_004514801.1\|2879835_2880861_-\|transposase	IS21-like element ISGme4 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-83	48.2

DBSCAN-SWA_8

3062881 : 3071504

Moraxella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004511748.1\|3062881_3064126_+	response regulator	W8CYM9	Bacillus_phage	2.0e-11	29.1
WP_004511747.1\|3064126_3065500_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	8.1e-27	31.1
WP_004511746.1\|3065754_3066711_+	HD domain-containing protein	NA	NA	NA	NA
WP_004511745.1\|3066801_3068112_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.4e-54	33.0
WP_004511744.1\|3068208_3068766_-	hypoxanthine-guanine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	1.2e-05	25.2
WP_187148485.1\|3068823_3070626_-	DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	8.6e-85	35.6
WP_004511742.1\|3070625_3071504_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	8.6e-38	39.9

DBSCAN-SWA_9

3691419 : 3730426

Escherichia_phage(33.33%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004514801.1\|3691419_3692445_-\|transposase	IS21-like element ISGme4 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-83	48.2
WP_148206087.1\|3692526_3693540_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011366174.1\|3694108_3694927_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_004512508.1\|3694970_3696743_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004512509.1\|3697190_3697946_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_004512510.1\|3698031_3698340_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_004512511.1\|3698349_3700317_+	cation acetate symporter	NA	NA	NA	NA
WP_004512512.1\|3700809_3701982_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_004512513.1\|3702036_3703644_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	8.6e-20	68.1
WP_011366176.1\|3703789_3704581_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_004512516.1\|3704586_3706593_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_004512517.1\|3706594_3707524_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	1.4e-43	38.8
WP_004512518.1\|3707550_3708864_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004512519.1\|3709006_3709585_+	hypothetical protein	NA	NA	NA	NA
WP_004512520.1\|3709617_3710307_+	CoA transferase subunit A	NA	NA	NA	NA
WP_004512521.1\|3710324_3710981_+	CoA transferase subunit B	NA	NA	NA	NA
WP_004512522.1\|3711014_3711545_+	hypothetical protein	NA	NA	NA	NA
WP_004512523.1\|3711680_3713027_+	hypothetical protein	NA	NA	NA	NA
WP_004512524.1\|3713108_3713885_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_004512525.1\|3713941_3714862_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004512526.1\|3714911_3716087_+	thiolase family protein	NA	NA	NA	NA
WP_004512527.1\|3716369_3717716_-	hypothetical protein	NA	NA	NA	NA
WP_004512528.1\|3717763_3719077_-	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004512529.1\|3719174_3720299_-	6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase	NA	NA	NA	NA
WP_004512530.1\|3720360_3721503_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_004512531.1\|3721549_3722692_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_004512532.1\|3722945_3724592_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_004512533.1\|3724595_3725057_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004512534.1\|3725356_3725911_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004512535.1\|3725907_3727299_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004512536.1\|3727302_3727713_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004512537.1\|3727742_3729473_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004512538.1\|3729436_3730426_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_007515

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007515_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007515_1

866-964

Orphan

Consensus_repeat	Method
GTTTTCCTTCGATTTTCTCACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007515_1

>merge|NC_007515|1|866-964|CRISPRCasFinder
GTTTTCCTTCGATTTTCTCACTCGGCAACCTAAATTTTCCTTCGATTTTCTCACTCACGCCCGAAAAAGGAGATAAATTTTCCTTCGATTTTCTCACTC

>NC_007515|1|1|866-964|CRISPRCasFinder
GTTTTCCTTCGATTTTCTCACTC	GGCAACCTAAATTTTCCTTCGATTTTCTCACTCACGCCCGAAAAAGGAGATAA
ATTTTCCTTCGATTTTCTCACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007515.1\|WP_004514728.1\|3861_4071_-\|hypothetical-protein	unknown	unknown	unknown
NC_007515.1\|WP_004514725.1\|4780_5053_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_007515.1\|WP_004514723.1\|5320_5809_-\|hypothetical-protein	unknown	unknown	unknown
NC_007515.1\|WP_004514726.1\|4574_4784_-\|hypothetical-protein	unknown	unknown	unknown
NC_007515.1\|WP_004514721.1\|6236_6956_-\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|184358
NC_007515.1\|WP_004514722.1\|6010_6196_-\|hypothetical-protein	unknown	unknown	unknown
NC_007515.1\|WP_004514724.1\|5036_5261_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|227054
NC_007515.1\|WP_011363043.1\|2392_3562_-\|IS4-like-element-ISGme2-family-transposase	unknown	unknown	gnl\|CDD\|372999
NC_007515.1\|WP_148206096.1\|2066_2378_-\|hypothetical-protein	unknown	unknown	unknown
NC_007515.1\|WP_004514727.1\|4067_4409_-\|hypothetical-protein	unknown	unknown	unknown

>NC_007515.1|WP_148206096.1|2066_2378_-|hypothetical-protein
MEYTINHEEEGPYWNRVMVNSVHDVLYAAGTLDNFKVSLFSPRYQNEDDEMSVSTITEIIEAEEEGHKAYIFKCKNGKTYLETSLGYTEDQLKNKKTLYSIAG
>NC_007515.1|WP_011363043.1|2392_3562_-|IS4-like-element-ISGme2-family-transposase
MHTGPTVFKQLLQFLPRYEFNLCVRRHRGEYREKKFSTYDQFLCLAYAQMAGRESLRDIETCLNSHQEKLYHIGFRGDVSRTTLADANERRDWRIFQDFGHVLIGIAQQLYQADAISVELTQPLYAFDSTTIDLCLTLFPWAEFRKTKAAVKMHTLIDLRGPIPTWVTITTGKVHDVRMLDHLPVAKDAIYTMDRGYVDFARLHSIHKQGAFFVVRAKDNLKCQRLYSHPKDKESGVRADQIITLVTQKSKKGYPEKLRRVSYVDKERNKRLVFLTNNFEIPAATVAAIYKQRWQVELFFKWIKQHLRIKSFIGTSVNAVKSQIWVALCIYLLVAITKKKLGVPCSLYTFLQILEVNLFEKKPISSLVAEALKRNADYPERNQLNLFNY
>NC_007515.1|WP_004514728.1|3861_4071_-|hypothetical-protein
MNGKERQTFITHLTSDHAEARKAYNAATEELRLVTWGKMLGLEAAASCAGMQTLHRDLADLRNRDCENE
>NC_007515.1|WP_004514727.1|4067_4409_-|hypothetical-protein
MANTETIDYAILQRLIEAGAIRGAEVIGQPGGWSVIFKYGMTERALGVRGGKVRIFRKIETLVAYLRELGIVQFTVNAANYDPTTTIRPGRPDTSERMKRAFAVAQDIKEGNQ
>NC_007515.1|WP_004514726.1|4574_4784_-|hypothetical-protein
MSKTPESRTDWPRIEAMKDEEIDLTDSPELDADFIREAIPWGERAKKALDNGFLTEEEGKAWLREKLEE
>NC_007515.1|WP_004514725.1|4780_5053_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MVWKVEIDPAARRELKKLDPQISGRVLKFLFERVARLDDPRSIGEALKGSRFGDFWKYRVGDYRIITSIEDEALVILVVRVGNRREVYER
>NC_007515.1|WP_004514724.1|5036_5261_-|ribbon-helix-helix-protein,-CopG-family
MLAIRLPEEIETRLDSLAKATGRSKSYYVREALVEYLDDLEDIYLAEKRLEDIRAGRTKTIPLEEVMKEYGLES
>NC_007515.1|WP_004514723.1|5320_5809_-|hypothetical-protein
MANVTITEAARLAGISRQYLYTKYIKPGVLTVKKDENEKPCIDTAELMRVFNGRLPGPKGQSTPDPSSDIHALQNMTRENDIKNAALQAEVEALREAIKAADKRETWLQGKVDELTGQLATAHRLLEHKAHPSEPPPADPVPVPDPPQEPKRGFFGRLFGRK
>NC_007515.1|WP_004514722.1|6010_6196_-|hypothetical-protein
MKKQVIMGLVVVVMGAMLVAGCNKAPEGYTADGQPAKALKKGELPKAGPEKNMLDYYKGKK
>NC_007515.1|WP_004514721.1|6236_6956_-|P-type-conjugative-transfer-protein-TrbJ
MKKALIVTVLILSMSAQAHATIPVLDYTNWAQNLFSYVQQVATAINTAEQLATQYQQLEVAIRQARQLNSDQIRGRIMNGIRQLAEIQQKTRGITYDYGRTEGAFDQYYPDMAAYNGMSGKDYAAQAAKANQQLQNSVRDAMLAQGLISNAATDQDALNALVAASNSADGQLAAAQAGNQISAMVAQQLIQLQQIMATSAREQSSYMAAQAAEKAKPLKKGDLPKGDDRNMLDYLRKKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007515_1	1.1\|889\|53\|NC_007515\|CRISPRCasFinder	889-941	53	NC_007515	Geobacter metallireducens GS-15 plasmid, complete genome	889-941	0	1.0

1. spacer 1.1|889|53|NC_007515|CRISPRCasFinder matches to NC_007515 (Geobacter metallireducens GS-15 plasmid, complete genome) position: , mismatch: 0, identity: 1.0

ggcaacctaaattttccttcgattttctcactcacgcccgaaaaaggagataa	CRISPR spacer
ggcaacctaaattttccttcgattttctcactcacgcccgaaaaaggagataa	Protospacer
*****************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007517

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007515

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection