CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007575	Sulfurimonas denitrificans DSM 1251, complete sequence	2 crisprs	csa3,cas3,PD-DExK,DEDDh	6	2	1	0

1. NC_007575

CRISPR-Cas detection and classification

Crispr_ID: NC_007575_1

• CRISPR_ID: NC_007575_1
• CRISPR_location: 310108-310209
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_007575_1

Consensus_repeat	Method
ATGGAAATGTTATAACTTTTGTTA	CRISPRCasFinder

spacers of NC_007575_1

>1.1|310132|54|NC_007575|CRISPRCasFinder
AAGGCAAAAATAGTGTTGATTTAGATACAAAAGGTAACGTTGCTTTCAATATAG

CRISPR arrays and Neighbor proteins around NC_007575_1

CRISPR arrays

The CRISPR arrays of NC_007575_1

>merge|NC_007575|1|310108-310209|CRISPRCasFinder
ATGGAAATGTTATAACTTTTGTTAAAGGCAAAAATAGTGTTGATTTAGATACAAAAGGTAACGTTGCTTTCAATATAGATGGAAATGTTATAACTTTTGCTA

>NC_007575|1|1|310108-310209|CRISPRCasFinder
ATGGAAATGTTATAACTTTTGTTA	AAGGCAAAAATAGTGTTGATTTAGATACAAAAGGTAACGTTGCTTTCAATATAG
ATGGAAATGTTATAACTTTTGCTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_007575.1|WP_011371931.1|307959_308208_+|30S-ribosomal-protein-S17	unknown	unknown	gnl|CDD|235532
NC_007575.1|WP_008338996.1|313850_314069_+|translation-initiation-factor-IF-1	unknown	unknown	gnl|CDD|178954
NC_007575.1|WP_011371929.1|307352_307778_+|50S-ribosomal-protein-L16	unknown	unknown	gnl|CDD|236411
NC_007575.1|WP_011371934.1|308808_309354_+|50S-ribosomal-protein-L5	unknown	unknown	gnl|CDD|178791
NC_007575.1|WP_011371943.1|314102_314840_-|rhodanese-like-protein	unknown	unknown	gnl|CDD|225450
NC_007575.1|WP_011371942.1|313075_313834_+|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|235576
NC_007575.1|WP_011371938.1|310599_310956_+|50S-ribosomal-protein-L18	unknown	unknown	gnl|CDD|235524
NC_007575.1|WP_011371939.1|310964_311405_+|30S-ribosomal-protein-S5	unknown	unknown	gnl|CDD|234790
NC_007575.1|WP_011371941.1|311809_313072_+|preprotein-translocase-subunit-SecY	unknown	unknown	gnl|CDD|236412
NC_007575.1|WP_011371936.1|309644_310040_+|30S-ribosomal-protein-S8	unknown	unknown	gnl|CDD|234658
NC_007575.1|WP_011371930.1|307764_307950_+|50S-ribosomal-protein-L29	unknown	unknown	gnl|CDD|178971
NC_007575.1|WP_011371940.1|311408_311807_+|50S-ribosomal-protein-L15	unknown	unknown	gnl|CDD|235523
NC_007575.1|WP_011371933.1|308575_308806_+|50S-ribosomal-protein-L24	unknown	unknown	gnl|CDD|183399
NC_007575.1|WP_011371946.1|315899_316106_-|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011371927.1|306305_306623_+|50S-ribosomal-protein-L22	unknown	unknown	gnl|CDD|234793
NC_007575.1|WP_011371928.1|306624_307350_+|30S-ribosomal-protein-S3	unknown	unknown	gnl|CDD|234722
NC_007575.1|WP_011371944.1|314847_315150_-|chorismate-mutase	unknown	unknown	gnl|CDD|214841
NC_007575.1|WP_011371932.1|308207_308576_+|50S-ribosomal-protein-L14	unknown	unknown	gnl|CDD|180117
NC_007575.1|WP_011371935.1|309353_309539_+|type-Z-30S-ribosomal-protein-S14	unknown	unknown	gnl|CDD|181216
NC_007575.1|WP_011371945.1|315203_315890_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_007575.1|WP_011371931.1|307959_308208_+|30S-ribosomal-protein-S17	gnl|CDD|235532	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed.	6.33414e-28
NC_007575.1|WP_008338996.1|313850_314069_+|translation-initiation-factor-IF-1	gnl|CDD|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	4.74286e-48
NC_007575.1|WP_011371929.1|307352_307778_+|50S-ribosomal-protein-L16	gnl|CDD|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.1115e-88
NC_007575.1|WP_011371934.1|308808_309354_+|50S-ribosomal-protein-L5	gnl|CDD|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	2.97991e-104
NC_007575.1|WP_011371943.1|314102_314840_-|rhodanese-like-protein	gnl|CDD|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	3.01373e-23
NC_007575.1|WP_011371942.1|313075_313834_+|type-I-methionyl-aminopeptidase	gnl|CDD|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	7.5979e-137
NC_007575.1|WP_011371938.1|310599_310956_+|50S-ribosomal-protein-L18	gnl|CDD|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	9.31301e-45
NC_007575.1|WP_011371939.1|310964_311405_+|30S-ribosomal-protein-S5	gnl|CDD|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	4.49811e-80
NC_007575.1|WP_011371941.1|311809_313072_+|preprotein-translocase-subunit-SecY	gnl|CDD|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	0
NC_007575.1|WP_011371936.1|309644_310040_+|30S-ribosomal-protein-S8	gnl|CDD|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	1.0711e-66
NC_007575.1|WP_011371930.1|307764_307950_+|50S-ribosomal-protein-L29	gnl|CDD|178971	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.	1.35606e-11
NC_007575.1|WP_011371940.1|311408_311807_+|50S-ribosomal-protein-L15	gnl|CDD|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	2.24293e-45
NC_007575.1|WP_011371933.1|308575_308806_+|50S-ribosomal-protein-L24	gnl|CDD|183399	PRK12281, rplX, 50S ribosomal protein L24; Reviewed.	8.4122e-29
NC_007575.1|WP_011371927.1|306305_306623_+|50S-ribosomal-protein-L22	gnl|CDD|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	1.7499e-43
NC_007575.1|WP_011371928.1|306624_307350_+|30S-ribosomal-protein-S3	gnl|CDD|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	6.89074e-144
NC_007575.1|WP_011371944.1|314847_315150_-|chorismate-mutase	gnl|CDD|214841	smart00830, CM_2, Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine..	7.37094e-14
NC_007575.1|WP_011371932.1|308207_308576_+|50S-ribosomal-protein-L14	gnl|CDD|180117	PRK05483, rplN, 50S ribosomal protein L14; Validated.	1.07282e-80
NC_007575.1|WP_011371935.1|309353_309539_+|type-Z-30S-ribosomal-protein-S14	gnl|CDD|181216	PRK08061, rpsN, type Z 30S ribosomal protein S14.	2.28317e-36
NC_007575.1|WP_011371945.1|315203_315890_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.52091e-38

Protein sequences

>NC_007575.1|WP_011371936.1|309644_310040_+|30S-ribosomal-protein-S8
MINDLVSDALTRIRNAGMRRLDVTTLVHSKSVEALANILVEKGYIESCNVVEDGVKKTINVVLKYSDNGKSVINEMKRISKPGRRVYKGKDEIKRFKNGYGTIIVSTSHGVLPNDKAYALGVGGEVMCTVW
>NC_007575.1|WP_011371935.1|309353_309539_+|type-Z-30S-ribosomal-protein-S14
MAKKSMIVKAAREPKFKVRGYTRCQICGRPHSVIRDFGICRVCFRKMANEGLIPGVRKSSW
>NC_007575.1|WP_011371934.1|308808_309354_+|50S-ribosomal-protein-L5
MARMKDKYLALKAELQADLGIKNPMQTPALEKIVISVGAGFAMKDNKLIQNIEDTITTIAGQKASTVIAKKSVAGFKVREGMPVGVRVTLRGEKMYNFFDRLVSMALPRVKDFRGVPRNGFDGRGNYNFGLQEQLIFPEVSYDSVMQIHGMNITVVTSAESDKAGFALLEKMGMPFSKGSN
>NC_007575.1|WP_011371933.1|308575_308806_+|50S-ribosomal-protein-L24
MAKFKFKKGDTVEIIAGDDRGTKATVLAVLPKKNKVIVEGCKIVKKAIKPTEENTKGGHLNKEMPIDVSNVRKVEA
>NC_007575.1|WP_011371932.1|308207_308576_+|50S-ribosomal-protein-L14
MIQAFTRLNVADNTGAKEVMCIKVLGGSKRRYAQVGDVIIASVKKATPTAKVKKGKVVKAVIVRTAKEIHRENGSLIRFDDNAAVILDDKREPIGTRIFGPIAREVRYSGFMKIVSLAPEVV
>NC_007575.1|WP_011371931.1|307959_308208_+|30S-ribosomal-protein-S17
MTHKREIQGNVVKISGDKTASIVVERRVMHPRYHKVVKRFKKYLVHDERNELKVGDEIVAIECRPLSKTKSYRLKSVVVGVK
>NC_007575.1|WP_011371930.1|307764_307950_+|50S-ribosomal-protein-L29
MKYSDLADKNVVELQAMLKEKKTQLFTLKIKRQMMQLQDTSELRIAKKDVARINTALSAAK
>NC_007575.1|WP_011371929.1|307352_307778_+|50S-ribosomal-protein-L16
MLMPKRTKYRKMMKGRNRGYARSGYTLAFGDIALKAVEAGRINSRQIESARISATRHIKRNGKIWIRVFPAKPLTAKPLETRMGKGKGSVDQWVMNIKPGRIIFEMAGVPEELAREALTLALHKLPFKTKIITAEMSNEIF
>NC_007575.1|WP_011371928.1|306624_307350_+|30S-ribosomal-protein-S3
MGQKVNPIGLRLGINRNWESRWFPNFKTAAAYLGEDHKIRTYLKKELYYAGVSNIVIERTAKRLRVTIIAARPGIIIGKKGSDIEKLKDTLQALVGKPLSVNIKEEKKAQISSQLVAENVATQLERRVAFRRAMKKVMQNAQRGGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGFAEAHTTYGCIGVKVWIFKGEVLTKGIPAEVKEEQQKEGARRPKRAPKRENSGKAE
>NC_007575.1|WP_011371927.1|306305_306623_+|50S-ribosomal-protein-L22
MARALLKFIRVSPIKSRLIAREIQGMNAELALASLEFTPNKAAKIIAKVVASAVANSGNEAADCIVTSCRVDNGPVLKRFRPRARGMASGIRKPTAHILVEVEGK
>NC_007575.1|WP_011371938.1|310599_310956_+|50S-ribosomal-protein-L18
MKAKVLKSKIANRLKRKRRIRAKISGCASLPRVSVFRSNRYLSVQAINDATATTLTSLSSKATGHKANKEGGAALGAAFAAKLKEVGISQIVFDRNGYQYHGVIAAFGDALRENEIKF
>NC_007575.1|WP_011371939.1|310964_311405_+|30S-ribosomal-protein-S5
MEINREDFEESIVNIGRVTKVVKGGRRFRFTALVVVGNKKGTIGFGAGKAKEVPDAIKKAVDNAFKNLSKVSIKGTTIAHDIEHKYNASRILLKPASEGTGVIAGGAVRPVLELAGIKDVLTKSIGSNNPGTLVRATVEALGRLKG
>NC_007575.1|WP_011371940.1|311408_311807_+|50S-ribosomal-protein-L15
MGIENLTPAEGSTANRKRVGRGCGSGMGKTSTRGGKGQTARSGSSRKRNFEGGQTPLARRLPKIGFTSRVVKPYVINVEKIKAVAELAEITMESIRGVHKIAAGITKVKLVGASAKDLASKIKDDNVTATGK
>NC_007575.1|WP_011371941.1|311809_313072_+|preprotein-translocase-subunit-SecY
MNKNLVNKIFITIGFLFIYRLLAYVPVPGVDAAVIASFFDSHQSDALGLFNMFSGNAVERMSIIALGIMPYITASIIMELLAATFPTLGQMKKERDGMVKYMQIIRYATIVITIIQAIGISVGLQSLTGPNGNSAILADHNTFIMLSAVSMLAGTMLLMWIGEQITQSGIGNGISLIIFAGIVSAIPSAIGQTFTMVNTGAMSFITVLAILALIFGTVAVIIYVELGERRIPVTYAKKVMLQNQNKRVMNYIPIKVNLAGVIPVIFASAILMFPMTVMSSSTNPTIMAIADYLNPNSYFFNFLTFVFVVFFAFFYASITFNSKDISENLKKQGGFIPGIRTGNATAEFLNTTASNLTFTGALYLGLVATLPFMIIKGMGVPFFFGGTAVLIVVQVALDTMRKIEAQIYMSKYETLSAVGL
>NC_007575.1|WP_011371942.1|313075_313834_+|type-I-methionyl-aminopeptidase
MAIALRQPADIEKLRAANKIVGGALELLRQNTKIGISLKELDAMAEDYIRSHEARPSFKGLYGFPNAVCTSLNHVIIHGIPTEYKLQEGDIIGYDIGTELNGWFGDAAITVAVGEVSDKDKELIACAKDSLYEAIDAIKVGMRFKELSVILENAIRSRGFVPLHSFCGHGIGKKPHEEPEIPNYLEGKDPKGGPKIKNGMVFCLEPMICQKDSKPLILENKWDVVSADGLRGSHYEHTVAVVNGKAEILSLA
>NC_007575.1|WP_008338996.1|313850_314069_+|translation-initiation-factor-IF-1
MAKSDVIEVDGKIIEALPNATFRVELENGHIILCHIAGKMRMHYIKILPGDKVKLELTPYSLDKGRITYRYK
>NC_007575.1|WP_011371943.1|314102_314840_-|rhodanese-like-protein
MKFVLILLFALHVNAYDAFIKPAQLNEILQENNLILLDVSKYSDYKKSHISGAIHTNISKFINNKYTGVSINFNQKIEDEMCNLGINENSHVVIYSRTNSIDYLNATYLASTFLQHGFENISILDGGYMAWVFKYNNKVTSIESKPLKNGTFKATYNPQILVDEEYLKDTTETTVAKSLKEIFFDDLTLRSEFELKKLFSNELTLEKERQNTIYSDTYLTALANWYVLYKMFDLKNMKIYKSDIE
>NC_007575.1|WP_011371944.1|314847_315150_-|chorismate-mutase
MSEVKKCNSLLEIRNEIDKIDDLIVELISKRSHLVRQAASFKNSIEEVKADDRVDYILQKVRHSAIKADVSPNMISDLFKIMINEMVETEISEFRNTQTF
>NC_007575.1|WP_011371945.1|315203_315890_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTLNQIKMAIYSIFLTNYYGFKLKGSNSKDKKRLRVEYSTKLLNSLNIKINIINKSKLPQDGQYLLVSNHRTIIDPLIIEFATKDSSIFGYWIAKKELYSSLFFGSFTRNAGTILLDREASQMGGFFKDIKECTKEKNSIFIFPEGTRNKSEVQLSEFKDGSEIIAIKNRLPILPVYIRSQAEKTLLLAIKDSTLERTIDIEIGDIIDYKNRELPLREAYKRVFNITE
>NC_007575.1|WP_011371946.1|315899_316106_-|hypothetical-protein
MAKNRKSIELHDKKISFELENVSYDVIRFYPTKMTLDVMVFENGAKEGIKTLPFAHLPKEIKKIIKPN

Crispr_ID: NC_007575_2

• CRISPR_ID: NC_007575_2
• CRISPR_location: 845869-846085
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NC_007575_2

Consensus_repeat	Method
AAAACCGATAACTCCGATAACTC	CRISPRCasFinder
ATAACTCCGATAACTCCGAGAAG	PILER-CR

spacers of NC_007575_2

>2.1|845892|50|NC_007575|CRISPRCasFinder
CGATAACTCCGAGAAGTCTATTTTTAGGCACTTCTGAGGGTTTAGCACTT
>2.2|845965|27|NC_007575|CRISPRCasFinder
CGATAAGTCAAGCAAAACGCAAAATAG
>2.3|846015|41|NC_007575|CRISPRCasFinder
CGAGAACCTTTAAAATAGGGGTTTATGAGGGTTTAAAAGTA
>2.4|845908|41|NC_007575|PILER-CR
TCTATTTTTAGGCACTTCTGAGGGTTTAGCACTTGATACAA
>2.5|845972|31|NC_007575|PILER-CR
TCAAGCAAAACGCAAAATAGTGAATATATTG
>2.6|846026|41|NC_007575|PILER-CR
CTTTAAAATAGGGGTTTATGAGGGTTTAAAAGTAGTTTCCG

CRISPR arrays and Neighbor proteins around NC_007575_2

CRISPR arrays

The CRISPR arrays of NC_007575_2

>merge|NC_007575|2|845869-846085|CRISPRCasFinder,PILER-CR
ATAGGCTAAAAAACCGATAACTCCGATAACTCCGAGAAGTCTATTTTTAGGCACTTCTGAGGGTTTAGCACTTGATACAAATAAAACCGATAACTCCGATAAGTCAAGCAAAACGCAAAATAGTGAATATATTGCTCCGATAACTCCGAGAACCTTTAAAATAGGGGTTTATGAGGGTTTAAAAGTAGTTTCCGATAACTCCGATAACTCCGATAAG

>NC_007575|2|2|845869-846078|CRISPRCasFinder
ATAGGCTAAAAAACCGATAACTC	CGATAACTCCGAGAAGTCTATTTTTAGGCACTTCTGAGGGTTTAGCACTT
GATACAAATAAAACCGATAACTC	CGATAAGTCAAGCAAAACGCAAAATAG
TGAATATATTGCTCCGATAACTC	CGAGAACCTTTAAAATAGGGGTTTATGAGGGTTTAAAAGTA
GTTTCCGATAACTCCGATAACTC

>NC_007575|2|1|845885-846085|PILER-CR
ATAACTCCGATAACTCCGAGAAG	TCTATTTTTAGGCACTTCTGAGGGTTTAGCACTTGATACAA
ATAAAACCGATAACTCCGATAAG	TCAAGCAAAACGCAAAATAGTGAATATATTG
CTCCGATAACTCCGAGAACCTTT	AAAATAGGGGTTTATGAGGGTTTAAAAGTAGTTTCCGATAA
CTCCGATAACTCCGATAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_007575.1|WP_011372437.1|835844_839126_-|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|369594
NC_007575.1|WP_011372448.1|846910_847891_-|cysteine-desulfurase	unknown	unknown	gnl|CDD|224029
NC_007575.1|WP_041672203.1|844846_845098_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|374224
NC_007575.1|WP_011372442.1|844490_844793_+|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011372450.1|848747_849695_-|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl|CDD|225419
NC_007575.1|WP_011372445.1|845398_845614_-|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NC_007575.1|WP_011372454.1|853553_854168_-|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|376858
NC_007575.1|WP_011372440.1|842999_843437_-|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NC_007575.1|WP_011372453.1|853253_853478_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NC_007575.1|WP_011372446.1|846135_846381_+|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011372449.1|847910_848741_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl|CDD|234823
NC_007575.1|WP_041672201.1|835276_835513_-|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011372447.1|846380_846653_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|368240
NC_007575.1|WP_011372451.1|849704_850295_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NC_007575.1|WP_011372444.1|845154_845409_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|224937
NC_007575.1|WP_011372441.1|843733_844363_-|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011372438.1|839155_842503_-|hypothetical-protein	unknown	unknown	unknown
NC_007575.1|WP_011372452.1|850304_853103_-|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239153
NC_007575.1|WP_011372455.1|854160_855834_-|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|225433
NC_007575.1|WP_011372439.1|842512_842998_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_007575.1|WP_011372437.1|835844_839126_-|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein	gnl|CDD|369594	pfam07916, TraG_N, TraG-like protein, N-terminal region. The bacterial sequences found in this family are similar to the N-terminal region of the TraG protein. This is a membrane-spanning protein, with three predicted transmembrane segments and two periplasmic regions. TraG protein is known to be essential for DNA transfer in the process of conjugation, with the N-terminal portion being required for F pilus assembly. The protein is thought to interact with the periplasmic domain of TraN to stabilize mating-cell interactions.	2.04175e-61
NC_007575.1|WP_011372448.1|846910_847891_-|cysteine-desulfurase	gnl|CDD|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	2.44107e-20
NC_007575.1|WP_041672203.1|844846_845098_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	4.9818e-11
NC_007575.1|WP_011372447.1|846380_846653_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	3.38581e-06
NC_007575.1|WP_011372455.1|854160_855834_-|4Fe-4S-binding-protein	gnl|CDD|225433	COG2878, COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion].	2.75046e-08
NC_007575.1|WP_011372451.1|849704_850295_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	2.9082e-58
NC_007575.1|WP_011372444.1|845154_845409_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	4.21103e-12
NC_007575.1|WP_011372452.1|850304_853103_-|molybdopterin-dependent-oxidoreductase	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	2.25376e-164
NC_007575.1|WP_011372454.1|853553_854168_-|molecular-chaperone-TorD-family-protein	gnl|CDD|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	1.04677e-17
NC_007575.1|WP_011372449.1|847910_848741_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl|CDD|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	4.38861e-107
NC_007575.1|WP_011372450.1|848747_849695_-|cytochrome-b/b6-domain-containing-protein	gnl|CDD|225419	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion].	8.44397e-05

Protein sequences

>NC_007575.1|WP_011372445.1|845398_845614_-|CopG-family-transcriptional-regulator
MTKKVTITLEENLIEELGLVAYETGKKKAQVIREALQEYFDVLSVTKTVQDYKMGTLKTISHKDVRAELGL
>NC_007575.1|WP_011372444.1|845154_845409_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MVYNIQYDPKALKQLKKLDKSIALLILDGIEEFASNPVLTKIKKLKTPFDGAYRLRICDYRVVFYQEDNLMLISKIAHRKDVYI
>NC_007575.1|WP_041672203.1|844846_845098_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MQYIAFMHKEDDDYVAVVPDLGFTSSYGETFAKAVEMIKEAAELYCEDLKTLPKASTLEELLQRDDLDLEPNAIPQLIDVKIS
>NC_007575.1|WP_011372442.1|844490_844793_+|hypothetical-protein
MEIVLIAIIGIIGLMIFTSGEDSSKNEVASKKSDSDDENFHRDDEASSFSSSDDDSSSAHFINPASGAPMIDEGTCGLDTLGNSYGNDDIFENTDTHSEF
>NC_007575.1|WP_011372441.1|843733_844363_-|hypothetical-protein
MSKFQKIKFDWKKDLIDKLETKEAIINDCLKEISESFFYEFAKDDVAKILRRTTNYKFIVEYSLFDELYPLATEDTREHIRKAVGIKSTFIHLDMDCLEIINKVISRIVNNFKNLFDKRYSGSVVVYQTNLLDNLVHFDDAFSILIAEEESKLEKKDEDEDEFLTAAFLKLKAKAIKKASKKLVKELIKRADELQGYRVCDTKSFVSMI
>NC_007575.1|WP_011372440.1|842999_843437_-|CopG-family-transcriptional-regulator
MEKKLTMRVPKELEDTLNKICATNNTSKSEYVRNIIVEHLNESKKEEGKIIKRLEKMEQNMNENFDKSNERIIKILTRILLYALANFHLLKLKIRNDLSENMTQETKDKTISVYVSEAKKLTNNHEVDSLQPKNNKTFFDNVIEK
>NC_007575.1|WP_011372439.1|842512_842998_-|hypothetical-protein
MKKIFVKFENILNFKFIATVFFILLLHIIYMLTPLSFGIFSEDFAMALYQIPIIGKGLFYIYYWLFNDMMINYFVEGLIFGNVIAFLIFERIKLQVALKNHQQLITIYKSTISQKEKQNLLLKAEVEDTKEELENYYDEADENEKTKIQDDLPEIETCSTN
>NC_007575.1|WP_011372438.1|839155_842503_-|hypothetical-protein
MNQEELLLWNIREKQRKKRSTDDELDEDLVFENVPKFKQAPARAANTSTNFNVDTQTNFDDNYKLSSSLTGNASLSVNDASQQSSTQNISFKNISTADITSPALVSAKVQTSSDSTTASSSASSLSSSSFATSPVIANFAIVKMTGADNFFKSAYTVGKGASIRATKAIDYIMRDGAFKDESNEATELRAQKHIDYMSRDEVKGSGGVLYDKNGNEISDSQAKSMMQDITGERRLVFSPNSNVKMTNAEFSKVITKTINTFSQDFHKNFDYTFAIHRNTDNPHAHLILTTKDVGGDGVKMFKDELFEIKQRFYENTKQLAMDKSDRYEIFYKDKSYFSEAKQIAGFTGDMPTSKFANQNTYLIKKIATAYKIPINEKALNSADKIKGFFEEHSDKYNEFITNAKNRYADTFTKYYKDSLELSEKYSLGEVPKDVEQFKAFLDENQKLFLADKIATDKGLELSSKHLKDDITINKWFTANKEKIKEWNTENEPRISKELYNRFEHLNNRVDKPFEIPQKRIDGITLNNHYKLDKMIFANDTRKALVDVVEARIKYFQQASKSNEVSKEEKKTNIERLDGLRGKIKAYDDITESSLKKYGIDTNCFSKDEKIVEMDGIRLEHGDNGVKFDSLLTKAIQNPEFTPEQKDKIEKISHVADKQQQVSVSALENAGFKREELLKEFSVEKIETKQQIINFKKSDEARGFGNINLKEWKQDNLDNFKLAKPQVSDKQINFAQKIANKLYEDVDFSKMNTLEVGKYINDNGTAFNSANLNPNEHLLSVDASKLSSEQQENYFRDLTRAEMFSAFKKDIDTLELLDLKHEKEFPQDSLVEKQIKIDLYATALDIKSKDYLEVMVKEHTHLQFEENIKKYGLDTPIGMANELKSQGLSYQDEKYRAMADLIVEKQFDKLMEKHDGTNDRELENRNSKMIGFVDGFKEQLEQTREYEAKIDEIENAVAQNDVFRAMNLVEQVEEHDMRGVELKINAAIEARFESVELELQKEFKLESKFLNEELEAAREVKIENLIENGNFRTAEIELKNGNLDSDIQQRLEMKLELFKSMQHTDEPLFDDFKMQTQKDEQQNEDNQKVKDAALQEKALEDINVEKEQIRSSGMGM
>NC_007575.1|WP_011372437.1|835844_839126_-|conjugal-transfer-protein-TraG-N-terminal-domain-containing-protein
MQKLFLFFILFSVSLFAAESSIYTWGYGELFYRVLQAVTILSQDNYIFKSAVAIGGFLLMIKNTVSGASSSDMAVTMGKYLFTITLIIGLFSTSTKRYIIEDEVTNQTFIVNNVPIGIGETFSLFTNLERNLARGFQSAMATPNSLNYTDVGLGFTMAAPLNVKSLIAADGHTRRTFNEYMGNCIFSAIAMNEISADIINFSTILKADLKVTGYLTPYYSTANPNGIDKQCEDVWELLVNTDIRQQLDVLEPLLAQEMGITQDKYQGAMAATSQLLFSTSKNSKDYLMQQTLINMTKDGIKATALAAGGDVQALAYASAAAEANQQQTLMTMGKMAQKNLPLYKAILTVLVLGIFILLVLLSVIYGDLGHIKMGFTLLFAMILWTPLAIILNAMTFITIESQLIWPQVDGGLTFFRTHKMHEDLALLIALIGYVGTMIPVLAYSIAKKSEQGFVSFFSGAGAVANSSASSAAAQTASGNISVGNSSLGKFSATDMHGTHDYLGQDSWRASHVANDGSLRTKTTNAQGIGTQTSDSAGLGQITADAHGTKITSVKDTTISAGLVNDISASTGKTLQELASNSAAFNSSFAHSLANGSTAGGTNIDTNTFSDTNTWGHATGEALTKVTQEGITNTLKQMTSNGHKFNFSSDHNANAGANANLTIGSPDGVSLFTGMSVKGNATIGYTVTGKSSDSKDFSTTITGDDAKTFGDTFSKNLTSSINENESLSLGLAKQAQKTGGFNDSDILTKADNYVKSWSDSESITKLHNITSRQGLSMTHDLLPDALNNYINNSPELSKIDLLDAGKIAIEQMRGGMHIDETRKAFEAASGTNLNLDMSGVQKAKDVIGEAEDKFKQQREHYKAQSTNVEERVEAIVPDIIKNTSNVPKNNSDMANINDSITKRYQQAHEEKRAEASGDMQDFTKQNKVNTKDEIDGGKDKIQENFYHAKDELGIWGTLKQNPMIDSTAKAIGLEGEFDKMINTIENKDYARIETAHDKALQDGLIGTKNPASSAANTRINTEKVENFSTQELKDMLTWEKMHPERDEINNAAERQLEQAVQNRENKVMQDKVQKAEKSVKTITEAVAEMKQNEQ
>NC_007575.1|WP_041672201.1|835276_835513_-|hypothetical-protein
MKNLKIPTWVFTSVGIFLLIIEIFIIIPQNNPLLVSTIGTLAIGFMITGWIFNILRCNQAIKQLKERKTGVAKKGHMI
>NC_007575.1|WP_011372446.1|846135_846381_+|hypothetical-protein
MHSLVLKVDDGFYTQLLSFLNQNKRQVNILEDIEDDGFPAISTDEAKQRVSSAVEEYRSGNMKTVPYSQGMDEIDKWVNNL
>NC_007575.1|WP_011372447.1|846380_846653_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRIEKNPFFNDRLFSILKYIAINNPANAKKFKKELDQKIINLVNMPFKYRQSIHYDDINVRDLIFKGYTIPYLIDNDMIVILDIFKWENK
>NC_007575.1|WP_011372448.1|846910_847891_-|cysteine-desulfurase
MINLNTLQYNKIEKVDISNSYSLGALSQSSDFETLCQTYKKKFGYKKLKTFSFSKEGFLGLLLELSGNICICEGESEALIECANIYEKLGFKIKWLNLNKDGKVNLSNLKDSSIDFLFLSSYVMDTFVKNDIQKIKELTNAKIISNGSAHVDLNSDALYFDNYKLTGFNLSSVLLFNDDMFTLLPIGTIDTIAVKLCKEALDEQRFNHKIKNIFLEKLMEIFEDNIYFFVQPQTTLDYSLHFGLKNIKARELIRTLALNKVFITNGEGCSLGLSKPSRIVQAMGYDEEISRNSIQLSFRDDVTIDKVDYVVNLLHVKYKQLISFNL
>NC_007575.1|WP_011372449.1|847910_848741_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MTKIMRSENFSLLYSKFDNHTKKVIIEKFDKDGISNIEDYVIKEEKVNFYLNSQKFLSVMSIAKHQDAHIVGFLLSEAVIKSFDDISSLEVSEDGLDVHVEAIVSKEGYENLFKEKTLTSGCCVGVTGNAEKIFNCAFVSSDYSKDANTILSSMKEFSQPSELFDNTGCVHKAKLVLEDGSFFVAEDIGRHNAIDKVIGLASMNKKDVTRSILYASGRLSMEMVVKCVMHKIPIVVSKAAVTFQGIKAANEHGITLVGFARDTKMNIYTHSGRIST
>NC_007575.1|WP_011372450.1|848747_849695_-|cytochrome-b/b6-domain-containing-protein
MQSNTFFTRNRAYILTLLGLGVVGFIFVAFMMIMDWEYFVKFPLHVILSGDTRGVLVEPTSNYQAMVNAAFGPSYNAIAPEIIRASNERQEFIWWVFVAEIAIFCFMYVKYGRKVAVVTNPSDEVEVFNIFHRAVIWLNIVVIVSLIITGFNITWGMRSGGGEVAFFLRGSHEMLGLVWLPLWFAMSVIAFKDAKILFNNSMTKKLILKGSYTPMKRVIFIVFILMGASLLFSGITIWYLHPDAYTHSEFIQLKRYLIYVHFGASVLIMFFLMDFVYSVMIAVKGNLKGLISGKYPREHLAQLAPDVLADIQSKR
>NC_007575.1|WP_011372451.1|849704_850295_-|4Fe-4S-dicluster-domain-containing-protein
MSKPEYARMKFYCDEDLCIDCNGCVVACKEAHEVPVGINRRKVVTINEGIVGKEMSMSMACMHCTDAPCQQVCPVDCFYIRADGIVLHDKDKCIGCGYCLFACPFGAPQFPQDGAFGTKGKMDKCTMCAGGPEETNSHEEFEKYGQNRISEGKVPMCASMCSTKALLVGDANEVAAIKTHRAVAHGKGISTQSYGW
>NC_007575.1|WP_011372452.1|850304_853103_-|molybdopterin-dependent-oxidoreductase
MQTLKSFGRRSFLKMASLATATTATSAFASNNVLRGATKDEIKNPYPGSKLIKTICTHCSVGCGVIAEVQNNVWVRQEVAHDHPISHGGHCCKGADMIDKVRGTNRLRYPTVKVDGKWARLEWDKAMSQVSNQLISIREKYGADAVQFLGSAKVSNEQAYYIRKFAAMFGTNNIDHQARIUHSPTVAGVANTWGYGAMTNHLGDMQNSKAIIIFGANPASNHPIAMQHILKSKEQNGAKIIVIDPRYSKTAAKSDIYCRIRTGTDIAFMYGMIRLIRENKWYDKSFIDNRVYGMEEIFKECEEYTPEHVEDVTGCSKELLIQATTAFATAEPGCLIWNQGWTQHTVGSSNTRLGSILQLVLGNMGKPGGGTNILRGHDNVQGSTDMGCLSDTLPGYYGLAEGSWKYFASQWKVDYDWLKGRFKSKEMMESKGFSLSLWMEGVLDETTAKNNAGTPLKALVCIGNGISTITQTQKVKEALDKLDLVVFIDPYVNDAAVITTRENNLYLLPAASQVETSGTVVNTGRSAQWRSKVVEPLYEARADHEILFDFAKRMGFYNQYIAGMDKGPNFTWPEDATDEIAKALKTIGMQGRTAERLKRHTENWHLFDTTSLKGSGAVSKEYYGLPWPCWSKDHPGSPVLYNVNLPVAQGGLGFRTRFGTERNGVSLLAADGIAPVGSHVKGGYDEITFKNIEALSGITLSEEQKKTVEGKNWKNDDSGILVATALKAGLAPYGNARARTIVWEFTDPIPKHREPLHSFRPDLIKKYPAVADKPNHYRANVRYASEQNAKNWVADHPINIVSGRVVEHMGTGTETRASKYLAELSGEMYGEVHPELGAKLGIRDGEMMWVYGTGEGKIKIKCKYSLRVDTNSVFLPQNFSGVWSGKSLESRYPAGTAPYALGENSNQVTSYGYDQQTSCPETKCSLVRLERA
>NC_007575.1|WP_011372453.1|853253_853478_-|twin-arginine-translocation-signal-domain-containing-protein
MSDEILKRRDFLKRAGIAASVLATSVVAVAATTEDKHRGHSDNMGSGVVVGTSKKKEILYTKTQAWEEFYKAAK
>NC_007575.1|WP_011372454.1|853553_854168_-|molecular-chaperone-TorD-family-protein
MRNKEIDRARLFIYNLLSLLFVESHVKSEMSKIKESLELLSINSFDDDVSEAAKTILQNIESSSNEELYNEYQELFLVPFGKFISLSASYYYEQREGGAMLLRVRNLLAKTKIRKDEAVFSAPEDHFGFIFTFTSYLIEQELQGELDEDLQKELFEAVINPFCDEIVHRMISSGTKLYSHVGAILGNFCNFERVYLDIAKIKAA
>NC_007575.1|WP_011372455.1|854160_855834_-|4Fe-4S-binding-protein
MQEFIYYSDKGLDFPLPEHIYVASTHNKDEKTNFIVSNSDEVHGEVIADEIDFYISNSKDPIAKKIKNVEKLYEINAIRFDMAQDISFSQDVSREVLLIASAKQKESFLKAMVPDEFNLFHVLPDAIKSISGHIGALKAVVNDTFKDATLNISQIVWFKRDKSQKERSGVFDPLESSIDSTLATLRKNLTNYDYKKFTLYDQNICQYHERRVEICSKCEEVCPSVAIVKDNTTKHLTFSQIDCHGCGGCISVCPSGALDYAPTSRESIFTMAKLFRSNIVLVIPRIISLKGLEVSLRENILPLKIEGEKFLHESTFLTLLQESGSQVIFYSDFLSKGVKDSISILNQIYQKKYNKDAILVAANKEELQKAIDKVELIPESKYSYNEIGSRKREVFSLRLSHMIGEEDLGVVTTGEHVHYAKVKVDQDKCTLCLACVGACNVDALVADPKTYELRLNASLCTSCGYCEPSCPEKDCLTLKRDIIELKPSWFKEVTLAKDTLFACVECGVEFATTKSVEKIAAMMGPIFASFSPIKQRTLYCCENCKPKVMIKGGLLNA

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_007575_2	2.1|845892|50|NC_007575|CRISPRCasFinder	845892-845941	50	NC_007575.1	832114-832163	0	1.0
NC_007575_2	2.2|845965|27|NC_007575|CRISPRCasFinder	845965-845991	27	NC_007575.1	832064-832090	0	1.0
NC_007575_2	2.4|845908|41|NC_007575|PILER-CR	845908-845948	41	NC_007575.1	832107-832147	0	1.0
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NC_007575.1	832053-832083	0	1.0
NC_007575_2	2.3|846015|41|NC_007575|CRISPRCasFinder	846015-846055	41	NC_007575.1	832000-832040	1	0.976
NC_007575_2	2.6|846026|41|NC_007575|PILER-CR	846026-846066	41	NC_007575.1	831993-832033	1	0.976

1. spacer 2.1|845892|50|NC_007575|CRISPRCasFinder matches to position: 832114-832163, mismatch: 0, identity: 1.0

cgataactccgagaagtctatttttaggcacttctgagggtttagcactt	CRISPR spacer
cgataactccgagaagtctatttttaggcacttctgagggtttagcactt	Protospacer
**************************************************

2. spacer 2.2|845965|27|NC_007575|CRISPRCasFinder matches to position: 832064-832090, mismatch: 0, identity: 1.0

cgataagtcaagcaaaacgcaaaatag	CRISPR spacer
cgataagtcaagcaaaacgcaaaatag	Protospacer
***************************

3. spacer 2.4|845908|41|NC_007575|PILER-CR matches to position: 832107-832147, mismatch: 0, identity: 1.0

tctatttttaggcacttctgagggtttagcacttgatacaa	CRISPR spacer
tctatttttaggcacttctgagggtttagcacttgatacaa	Protospacer
*****************************************

4. spacer 2.5|845972|31|NC_007575|PILER-CR matches to position: 832053-832083, mismatch: 0, identity: 1.0

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tcaagcaaaacgcaaaatagtgaatatattg	Protospacer
*******************************

5. spacer 2.3|846015|41|NC_007575|CRISPRCasFinder matches to position: 832000-832040, mismatch: 1, identity: 0.976

cgagaacctttaaaataggggtttatgagggtttaaaagta	CRISPR spacer
cgagaacctttaaaataggggtttatgagggtttaaatgta	Protospacer
************************************* ***

6. spacer 2.6|846026|41|NC_007575|PILER-CR matches to position: 831993-832033, mismatch: 1, identity: 0.976

ctttaaaataggggtttatgagggtttaaaagtagtttccg	CRISPR spacer
ctttaaaataggggtttatgagggtttaaatgtagtttccg	Protospacer
****************************** **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007575_2	2.2|845965|27|NC_007575|CRISPRCasFinder	845965-845991	27	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	291049-291075	6	0.778
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP026194	Enterobacteriaceae bacterium ENNIH1 plasmid pKPC-825d, complete sequence	68900-68930	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP034325	Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-CTX-M-3, complete sequence	52495-52525	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP007733	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-068, complete sequence	673-703	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP017288	Klebsiella variicola strain GJ3 plasmid pKPGJ-3d, complete sequence	23974-24004	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP017853	Klebsiella variicola strain GJ2 plasmid pKPGJ-2d, complete sequence	45473-45503	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP009852	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence	57412-57442	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP009857	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-d0d, complete sequence	60814-60844	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP026385	Serratia sp. SSNIH1 plasmid pKPC-56ce, complete sequence	34001-34031	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP026395	Klebsiella pneumoniae strain KPNIH48 plasmid pKPC-edb7, complete sequence	48525-48555	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP017282	Klebsiella variicola strain GJ1 plasmid pKPGJ-1c, complete sequence	20363-20393	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP026210	Citrobacter sp. CFNIH10 plasmid pKPC-2fe2, complete sequence	68872-68902	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP026188	Enterobacteriaceae bacterium ENNIH2 plasmid pKPC-ddab, complete sequence	70567-70597	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	MN693191	Marine virus AFVG_25M64, complete genome	31247-31277	6	0.806
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	MW012634	Bacillus phage DLc1, complete genome	27834-27864	8	0.742
NC_007575_2	2.5|845972|31|NC_007575|PILER-CR	845972-846002	31	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	76279-76309	9	0.71

1. spacer 2.2|845965|27|NC_007575|CRISPRCasFinder matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 6, identity: 0.778

cgataagtcaagcaaaacgcaaaatag	CRISPR spacer
aaatcagtaaagcaaaacgcaaaatga	Protospacer
 .** *** ****************..

2. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP026194 (Enterobacteriaceae bacterium ENNIH1 plasmid pKPC-825d, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

3. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP034325 (Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-CTX-M-3, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

4. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP007733 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-068, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

5. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP017288 (Klebsiella variicola strain GJ3 plasmid pKPGJ-3d, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

6. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP017853 (Klebsiella variicola strain GJ2 plasmid pKPGJ-2d, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

7. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP009852 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

8. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP009857 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-d0d, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

9. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP026385 (Serratia sp. SSNIH1 plasmid pKPC-56ce, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

10. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP026395 (Klebsiella pneumoniae strain KPNIH48 plasmid pKPC-edb7, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

11. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP017282 (Klebsiella variicola strain GJ1 plasmid pKPGJ-1c, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

12. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP026210 (Citrobacter sp. CFNIH10 plasmid pKPC-2fe2, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

13. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP026188 (Enterobacteriaceae bacterium ENNIH2 plasmid pKPC-ddab, complete sequence) position: , mismatch: 6, identity: 0.806

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
tctatgaaaacacaaaatagtgaaaatatta	Protospacer
** *  *****.************ *****.

14. spacer 2.5|845972|31|NC_007575|PILER-CR matches to MN693191 (Marine virus AFVG_25M64, complete genome) position: , mismatch: 6, identity: 0.806

tcaagc--aaaacgcaaaatagtgaatatattg	CRISPR spacer
--aatcttaaaacacaaaatattgaatatatta	Protospacer
  ** *  *****.******* **********.

15. spacer 2.5|845972|31|NC_007575|PILER-CR matches to MW012634 (Bacillus phage DLc1, complete genome) position: , mismatch: 8, identity: 0.742

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
acaagcaaaacgcaaaacagttaacgattta	Protospacer
 ****************.*** **..  **.

16. spacer 2.5|845972|31|NC_007575|PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 9, identity: 0.71

tcaagcaaaacgcaaaatagtgaatatattg	CRISPR spacer
actgtggtaacgccatatagtgaatatattg	Protospacer
 * .  . ***** * ***************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1857939 : 1865755	9	Bacillus_virus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_007575|1857939:1865755|DBSCAN-SWA
CTTAAGAAATTTCTCTCTCAGAGAAAAAGAAAGCGATTTCAACAGCCGCATTTTCTAAAGAGTCACTTCCATGAACAGCATTTGCATCTATATTTTCAGCAAAATCTGCACGAATTGTTCCAGCTTCCGCCTCTTTAGGATTAGTAGCTCCCATTAAGTTACGGTTTTTAATTAGTGCGCCTTCGCCCTCTAATACTGAAACAACTACTGGACCGCTAATCATAAAGTCAACTAAATCACCAAAGAAAGGTCTCTCAGAGTGAACAGCATAAAAAGCCTCTGCATCTGCGCGTGAGAGCTGCATTTTTCTAGTTGCTGCTATTTTAAGACCATTACTCTCAAAACGATCTAAAATCTTACCGACAACACCTTTAGCAACGGCATCTGGTTTTATTATTGATAGTGTGCGTTCCATCAAATCTCCTATAAATATATAAAATTAGGGTGGAATGATATCTAAAAAAGATTTGATTTTAAATTAAAAAGATAAATTTAGGATTAAAAACGGGTAAATGCGAGAATCACAAAGCGAAAATGCTTTGTGATTTTTAAAAAATTATTCTACTACAGCCTTGCCAATTCCACGCATGCTCTCTGTAATGTCTTCACGATGAGCAGGACTCTCACCTACAACATCCCAAGTAATACACCCTTCAGTTGGACATGCAGTAGCACATGCTGGTTCATCATGATGGCCAACGCACTCTACACATTTATTAGCATAAACATAGTAAACTTCTTCACCAGTCGGGTTATCATCCTCATCTACAATTGCTTCTACTGGACACTCATCAATGCAAGCGCCGCAGTTAATACATGTATCACCAATAATTACTGCCATTAGGATTCTCCTATTATTAATTTCGTGGTAAGTTTAACAAAAGATTTTTAAAGATAGCTAAAACAGCATAGATAAAAACGCAATAAGAAGAATTTGTTACGCTTTTTATATATAAAAAATGACCCAATTAAAGTTAGTTTATTTTTAGGTATTTTTTAATATCCTCTACTCTGTTTGTAAGCTCCCATGTAAAGCCCTCTTCTTCTCTTCCAAAGTGCCCATAAACAGCTGTTTTTCTGTAAATAGGACGTAACAAATCTAGAGATTTTATAATACCTTTTGGAGTTAAATCAAAGAGCTCTTTTACACAAGACTCTATCTTTTTCTCTTCAACTATCGCAGTGTTGTGCGTATCTATCATGATAGAAACAGGTGCTGAAATACCTATTGCATAGGCTATTTGTATGGTAACTCTATCACAAACTCCAGCAGCAACTAGATTTTTTGCTACATGGCGGCATGCGTATGCAGCGCTTCTATCGACTTTTGTAGGGTCTTTGCCTGAAAATGCGCCGCCACCATGAGGGCAACTTCCGCCATAAGTATCAACTATTATTTTTCGCCCTGTCAAACCTGCATCACCTTGTGGTCCGCCGATTACGAACTTTCCAGTTGGGTTGATATGAAAAAGAGTTTTTTCACTCATCAACTCAGCTGGAATAACAGCTCTTATAACATCCCTTATAACATCTTCACGTATCTTCTCTTGCGATACCTCTGGAGCATGTTGAGTTGAGACAACTACTGCTTCAACACTCACTGGTTTATCTCCAATGTACTTTACGCTTATTTGCGCTTTTCCATCTGGACGTAAATATGGAATGATGCCCTCTTTGCGAACTTCAGCTAAACGTCTGGTTAAGAGGTGAGCCAAATATATCGGTAGAGGCATTAAAACATCTGTTTCACGACAAGCATAACCAAACATAAGTCCTTGATCACCTGCTCCAATCTCTCCATCCAAGAGAGTTACACCTTGTGTTATATCTGGAGATTGCTCTCCTATGCCATTTAGCACAGCAGCAGAACGATAATCAAACCCATAAGTTGCATCCGTATAGCCTATCTCTTGAACAACTCGTCTTACAATCTCTTGCATTGGTGCATAAGCTGTAGTTTTCAGTTCGCCTGCAATTACACAAAAACCATTTGACACCAGTGTTTCACACGCTACATGTGCACTAGGATCATGTTCAATAATATAATCCAAAATTGCATCACTAATCTGATCTGCCATCTTATCAGGGTGCCCTTCTGTTACAGACTCTGAAGTGAAAATGTACTCTTTTAAAGTTTTTTCTTCTTTTGTCATCGATTTTCCTTATTGAAATATGAAGTTTCTCTTCATAAATCAGCGAAAGTATAGCAAAAAAAATTATATGAAAAATCTCAAACTTTTATTATTTCTTAAAGCTTTTTTTAACTTAAATATATTGTATTTTGATTAGCATACTTCTGTTAGAATTTTACAAATTTAACTAATTCAAGGACATAAATATGTTAGTAACAAATCAAGCTCCAGACTTCAGCGCAACGGCGGTTTTAGCAGATGGGTCAATCGTTGAAAACTTTAAACTCTCAGAAAATTTTGGAAAAAAAGGTACAGTTTTGTTTTTCTATCCACTAGACTTTACTTTTGTATGTCCATCTGAAATCATTGCGTTTTCTCATAGAATAGAGGAGTTTAAGAGTCGTGATGTAAATGTAATTGGTGTTTCAGTTGATAGCCAATTTTCACACTTTGCATGGAGAGAGACTCCAGTAAACAGCGGTGGTATCGGTCGCATAAAATACCCTCTTGTTGCAGACCTTACAAAACAAATCTCAAGAGATTATGATGTGCTCTTTGGCGAGTCTGTTGCACTTCGTGGCTCATTCTTGATTGATGGAAAAGGTGTTGTACGTCATGCTGTTATAAATGACTTGCCACTTGGAAGAAATATTGATGAGATGATTCGTATGGTTGACGCTATGCAGTTTACTGATGAGCATGGTGAAGTTTGTGCGGCAGGATGGCAAAAAGGTGATGAGGGAATGAAAGCTTCTACTGAGGGTGTTGCTGAGTACTTATCAAAGCACGAAAATAACCTATAAATTTCTCTTTATAAACTCTCACATGTAGTGAGGGTTTATTACTCTCTATCTAAGCTCTGCATCGCTTTGTCTGAAGCATTTTTTGCTCTATTGTAGTGATACTCATCCACTTTTTTTGCGCATGCACTAAAACTTACCGCTAAAATAACAGCTAAAACAGTTATAACTCTACTCATTTAAAATCTCCGTTTTAATCTATTTTACGATTATAGCATAGCGCTATTTTTTACAAACCTCATCGCCTTGTTATTTACAAAAATAATATCTCTCCACTGCCTCTTTGGAGCGATAAGATTTAATCGTTTTGGATTTGAACTTCTTGAAATCGCCACATAAAACTGAGATGGCGCAAAAATTTCATTACTCTGTATAACTAAGTCCACAATCGACATCCCTTGTGATTTGTGGATTGTTATGGCGTATGAGGGCTTGATTGGAAACTGAAAGATACTAAAGAGACTCTCTTCTACAAACTGAAGTTTTGCATCTACACTCTTTTGAACCCAATGAGATTTATTTTGCGCAACTCTCTCTAATTTTATAACAATCAAATCACTTTTTTGTACATAAACATAAGTAGCGTCAATATTTACAACAACTCCTCGCTCTCCATTAAAATAGTTCCATGAGTTTCTCGTAAAGAGAACAGGTGCACCTATCTTTATCTCTAAAGTTCTCTCAATTCTTGCATCATCCATAAAACGCTCTACATCTGCATCTTTAACACTCTTTACATGTTTGATTATTTGAGCCTCTTTTGTATGAAGTTCACTATCAAGCAGAGCTAACTGAGCTCTATTATGCATGGCTGCAGAGTCGTTTTTTGCAAATAAAAAAGTAAATTCGCTTAAATCTTGCGGTAGTGGCTTTATATAACTATTTAACTCATTATGGACATCTTCATCCACAAAACCCTCTCTTACTTTAGCTAAAAGCTCTATAAACTCCTTGTCATCTGTTCTATATATATGAGTTAGCTCAACTATCTCAAAATTAAACTTCTCCCAAATGGCAGACTCAAAAGCAAAATGCACCTCTGAATATCCACGAACAACTGGAGGAAGCTGTAAAAAATCGCCAACGACTAGAAGCATACCTTTGAAGTTGCTTTGTTCTAAACGAAGAGCTATCATCTCAAAGAGAGTGTCACTTACCATTGAAATCTCATCAATGACTATCAAATCCATACTAGAGATAAGCTTTTGCACTTTTGTTTTTATCTCATACTTAGAGTTTTTTTGAAGCTCCTCTATATCTTTAGCGATTCCCAAATCCAAAAAACTATGCAGTGTTTGACCACCTATCAAAGTAGCTGCCATACCAGTTGAAGCGAGTTTAGCAACTTTTTTTGCATCTTGTTCATAGTGTGAAATAACACTCTTTGTGAGTGTAGTTTTACCAACACCTGCACCACCCGTTAAAAAAACTTTTTTTTTAGATTCTAATTTATCTACTATCTCATTTAAAAAATTCATAAAAAATTATACTATAATTGCAAAAAATATTTACGAGGAAAGCCTATTTTATGGAGAAAATATTAGTTGTAGAAGATAATAAGACATTAGCTAAATTGATTGCTAAAAAGATAAATTTAGAGCTTGGTTTTGAAGTTGAAGTTGCCTATAACTTTTTAGAAGCCAAACTATTTTTAAAAAGATATAGTTACTTTTTAACACTAATTGATCTAAATCTTCCAGACTCACCAAATGGCGAAATTGTGGACTATGTACTTGAATCTGGAAATCGTGTTATCGTGTTGAGTGGAAATATTGATAAAACATTTCGTGCTAATATCCTCAAAAAAAACATAATTGACTATGTAAATAAGGGTGGAGTTAATGATATAAACTTCATCATCAACACAATTGCAAGGCTCAAAAAAAATCAAAATCATAAAATATTACTCGTTGATGACTCTATGGTTTTTAGAAAACAGATGACTCACATGCTTGAGAATATGTTTTTCAAAGTCATAACAGTTGCTCACGGGGAAGAGGCTCTTGGGATTTTAGATAATGTGCCAGACATAAGTTTAGTTTTAACAGACTATCATATGCCTGTGATGGATGGACTTGAGCTAACAACTGAGATTAGAAAAAAATATACAAAAAATGATTTAACAATCATCACAATCTCTGGGGATAATGATGAGGACACAACTGCAATGTTTTTAAAAATTGGAGCAAATGACTACATTAAAAAACCTTTCTCAAAAGAGGAGTTTTCATGTCGCATAAACAACTCTATCGAAGCGTTAGAAAATATACATGCAATCACAAATAATGCAAATAGAGATTTTTTAACGGGTCTTTACAATAGAAGATATTTTTTCAACAACATGTATCCATATTTTGAAAAAGCTCTAACCAATGGCAATCATTTTGCAATTGCTATGATAGATATTGACTTCTTTAAAAAGATAAATGATACTTATGGGCATGAAATGGGTGATAAAACGATAAATAAACTAGCAGATATTTTAAGAGCAAACACCTCTCAAGATGATATAGTTGCAAGATTTGGCGGTGAGGAGTTTTGTATTGTTTTAAAAAACAAAACTCCTCAGCAGGCTCTGTCTCATTTTGAAAATTTAAGAGAAAAGGTTGAAAATAGTTTTCTTTCACTTGGCGATGAAGAAAAAATCACATTTACTATCTCAATAGGTGTGCTTTTATCTCCAGAAGATACGCTTGATGAGAGCATAAATCAAGCAGATATGTTGCTATACAACGCAAAACAAAACGGAAGAAACCGCATAGAACATAACTAAGGCTCCATAACTATTACCTCTCCAAAAGGGACTTGGCTCTCTTTTGGTGCTATCCATTTAACCTCATACATTGGAGAGTTTTTTGGAAAAATCCCATCCAAATCACTAAAATAGAGAAGCAGTTTTACATCTTCTTGCCCTTTTTCTATAAACTCAAAAACAGCTCTAAAATCAGTCGCTCCGCCACCATTTAGCTCTACTTCTAAAATATCTCCACTGTAAAAAGTTTTATGTGTTTGAATCTTATCATCACACACAAGCAAATCAAGATGAAAGTTTGAAAAGGTGTTCATAATGAAATTTAGTTCACTTAAAAATGTACCTAAGAGAATCTCATCAACAGAGCCTGAACTATCTATGGCAACAACAAATCTAAATGTTTGACTCTTTGAGGATGGAAGATATATGCCGCTATATAGAAGCTTTTTACTTGGAGGAAGAAGTGTGTAGTCATCTCTGTAAAACTTATCTAGAGCAACTCTCAACTCATCTCGCCAATCTATTTTACTATTACATGTAAGAGTAAAAAATCTCTCCATTGACGCTGGAATCTCGTTATTTTTTTGAGACTCATCAAACTTAGCCTTTGCAAACTCTTCAAATAATTGCTCTTCTTGAATAAATTCTGGATTTTTAGAGCTGTTTTGATTATCGGAGTCACTTTTTGTATCTTCTATATCATCTGCCTCATACTCTAGCTCATCACGTAAAATATCATCTTTAAGCTCGGCATAAATCTCCTCAGCATACATACCGCTAAATCTCTTTGAATAGTGCGCTCCATGAGGTCTAAGAAGAGAATTTTTAACCAACATATCGTTTATTGCATAATCAGTTGCGAGTTGCCAAAGCCACCCACTTCTACCGTTTCGTCTGGATTCATGAGCTAAAGAAGCATGCATAGCTCCGTTTGCAAATACAAACTCCATCTCACCATCGCTTAGCTCTGCTAAAAAATCACTGTTGTACTCAAGCTTGATACCATTACTTTTAAAACTCTCTATATCATCGTTTACACTTAACTCCAGCTTTGAAGCAAGTGCACCAAATAAGGGATAATTAACTAAAAGTTTAGCTTTTGCTTGAGAGATTTTTTGATCAATTGACATCTAACTTTTACCCCAAAAGATAAGCGAACTTTTTAACCCACTCTCTAAAGGACGCTGAGTGTCCCATAGTGATGCCATTTCTTTGTAAATCTTGGACTATCATAACCGCAAATTCTGACTTTAAATCAAAAGTGTATTTGAGTAAGTTCTCTAACTTTTCATCACTTTTATCTCTAAGATATGCACTAACAAGTCCGCTACTTAGTGCGTAGAGAACATCTACTTCATCACTATAATCGCCATTTGAAGTTTCCAATATCTCATTTATATCTGGCAATCTATCTATTACTTTTATAAAAGATAAAAAAGAGACTGCGACATCTCTTCCAACTGCGCCGCTTATGGTCTCAAGCAGAAGTGATTTTGGCATATTTGCTTTTAGGATGCTATCTACATACTCCCAACTTCTAGGAGTTGCAAAACTTTTTGTATCACTTTTTGCATCAAAGGTAAAGAGATGCTCGTTTTTATATGAGATATAAGATATTACACGCTCATCAAGACCGCTTTTATAAGCCCAAAGTCGCCAATCTTCTACATGTACATCCATCTCAAAGTGGACAAATCTGTTTGCTAAAGGGCTGGGCATACGGTATGTTACACCTCTATCACTATCACGATTTCCAGCTGCCACAATTGCCCAACCATCAGGGAGTTCATACTCGCCAACTTTTCTATCAAGAATTAACTGATACGCTGAAGCTTGGACACTTGGCGGTGCTGAGTTTAACTCATCCAAAAACAGAACTCCCTCGCCATTTTTTGGTAAAAACGCAGGAGGTGCCCAGAGTGCAGTGTGTGACTCCTTATCGTAAAATGGTATTCCTTTTAAATCAGTTGGGTCCATAAGGGCTAATCTTAAATCTATAAAACCAATATCTCTGCTTGAGGCTATCTGCTTTATAATGGAGGATTTTCCAATCCCTGGTGCGCCCCATAAAAAAGTAGGAACTCTCTGCTCTATTAAAGAGCCAATAGTTGCTATCAAATCAGTTGCTCTCAT

Protein sequences of DBSCAN-SWA_1

>NC_007575|1857939:1865755|1862398_1863643_+|WP_011373394.1|DBSCAN-SWA
MEKILVVEDNKTLAKLIAKKINLELGFEVEVAYNFLEAKLFLKRYSYFLTLIDLNLPDSPNGEIVDYVLESGNRVIVLSGNIDKTFRANILKKNIIDYVNKGGVNDINFIINTIARLKKNQNHKILLVDDSMVFRKQMTHMLENMFFKVITVAHGEEALGILDNVPDISLVLTDYHMPVMDGLELTTEIRKKYTKNDLTIITISGDNDEDTTAMFLKIGANDYIKKPFSKEEFSCRINNSIEALENIHAITNNANRDFLTGLYNRRYFFNNMYPYFEKALTNGNHFAIAMIDIDFFKKINDTYGHEMGDKTINKLADILRANTSQDDIVARFGGEEFCIVLKNKTPQQALSHFENLREKVENSFLSLGDEEKITFTISIGVLLSPEDTLDESINQADMLLYNAKQNGRNRIEHN
>NC_007575|1857939:1865755|1858494_1858779_-|WP_011373390.1|DBSCAN-SWA
MAVIIGDTCINCGACIDECPVEAIVDEDDNPTGEEVYYVYANKCVECVGHHDEPACATACPTEGCITWDVVGESPAHREDITESMRGIGKAVVE
>NC_007575|1857939:1865755|1864759_1865755_-|WP_011373396.1|DBSCAN-SWA
MRATDLIATIGSLIEQRVPTFLWGAPGIGKSSIIKQIASSRDIGFIDLRLALMDPTDLKGIPFYDKESHTALWAPPAFLPKNGEGVLFLDELNSAPPSVQASAYQLILDRKVGEYELPDGWAIVAAGNRDSDRGVTYRMPSPLANRFVHFEMDVHVEDWRLWAYKSGLDERVISYISYKNEHLFTFDAKSDTKSFATPRSWEYVDSILKANMPKSLLLETISGAVGRDVAVSFLSFIKVIDRLPDINEILETSNGDYSDEVDVLYALSSGLVSAYLRDKSDEKLENLLKYTFDLKSEFAVMIVQDLQRNGITMGHSASFREWVKKFAYLLG
>NC_007575|1857939:1865755|1858912_1860091_-|WP_011373391.1|DBSCAN-SWA
MTKEEKTLKEYIFTSESVTEGHPDKMADQISDAILDYIIEHDPSAHVACETLVSNGFCVIAGELKTTAYAPMQEIVRRVVQEIGYTDATYGFDYRSAAVLNGIGEQSPDITQGVTLLDGEIGAGDQGLMFGYACRETDVLMPLPIYLAHLLTRRLAEVRKEGIIPYLRPDGKAQISVKYIGDKPVSVEAVVVSTQHAPEVSQEKIREDVIRDVIRAVIPAELMSEKTLFHINPTGKFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPTKVDRSAAYACRHVAKNLVAAGVCDRVTIQIAYAIGISAPVSIMIDTHNTAIVEEKKIESCVKELFDLTPKGIIKSLDLLRPIYRKTAVYGHFGREEEGFTWELTNRVEDIKKYLKIN
>NC_007575|1857939:1865755|1857939_1858353_-|WP_011373389.1|DBSCAN-SWA
MERTLSIIKPDAVAKGVVGKILDRFESNGLKIAATRKMQLSRADAEAFYAVHSERPFFGDLVDFMISGPVVVSVLEGEGALIKNRNLMGATNPKEAEAGTIRADFAENIDANAVHGSDSLENAAVEIAFFFSEREIS
>NC_007575|1857939:1865755|1860276_1860873_+|WP_011373392.1|DBSCAN-SWA
MLVTNQAPDFSATAVLADGSIVENFKLSENFGKKGTVLFFYPLDFTFVCPSEIIAFSHRIEEFKSRDVNVIGVSVDSQFSHFAWRETPVNSGGIGRIKYPLVADLTKQISRDYDVLFGESVALRGSFLIDGKGVVRHAVINDLPLGRNIDEMIRMVDAMQFTDEHGEVCAAGWQKGDEGMKASTEGVAEYLSKHENNL
>NC_007575|1857939:1865755|1863639_1864752_-|WP_011373395.1|DBSCAN-SWA
MSIDQKISQAKAKLLVNYPLFGALASKLELSVNDDIESFKSNGIKLEYNSDFLAELSDGEMEFVFANGAMHASLAHESRRNGRSGWLWQLATDYAINDMLVKNSLLRPHGAHYSKRFSGMYAEEIYAELKDDILRDELEYEADDIEDTKSDSDNQNSSKNPEFIQEEQLFEEFAKAKFDESQKNNEIPASMERFFTLTCNSKIDWRDELRVALDKFYRDDYTLLPPSKKLLYSGIYLPSSKSQTFRFVVAIDSSGSVDEILLGTFLSELNFIMNTFSNFHLDLLVCDDKIQTHKTFYSGDILEVELNGGGATDFRAVFEFIEKGQEDVKLLLYFSDLDGIFPKNSPMYEVKWIAPKESQVPFGEVIVMEP
>NC_007575|1857939:1865755|1860911_1861049_-|WP_158301046.1|DBSCAN-SWA
MSRVITVLAVILAVSFSACAKKVDEYHYNRAKNASDKAMQSLDRE
>NC_007575|1857939:1865755|1861079_1862348_-|WP_011373393.1|DBSCAN-SWA
MNFLNEIVDKLESKKKVFLTGGAGVGKTTLTKSVISHYEQDAKKVAKLASTGMAATLIGGQTLHSFLDLGIAKDIEELQKNSKYEIKTKVQKLISSMDLIVIDEISMVSDTLFEMIALRLEQSNFKGMLLVVGDFLQLPPVVRGYSEVHFAFESAIWEKFNFEIVELTHIYRTDDKEFIELLAKVREGFVDEDVHNELNSYIKPLPQDLSEFTFLFAKNDSAAMHNRAQLALLDSELHTKEAQIIKHVKSVKDADVERFMDDARIERTLEIKIGAPVLFTRNSWNYFNGERGVVVNIDATYVYVQKSDLIVIKLERVAQNKSHWVQKSVDAKLQFVEESLFSIFQFPIKPSYAITIHKSQGMSIVDLVIQSNEIFAPSQFYVAISRSSNPKRLNLIAPKRQWRDIIFVNNKAMRFVKNSAML

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011373389.1|1857939_1858353_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.3e-20	43.5
WP_011373390.1|1858494_1858779_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011373391.1|1858912_1860091_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.8e-115	54.7
WP_011373392.1|1860276_1860873_+	peroxiredoxin	NA	NA	NA	NA
WP_158301046.1|1860911_1861049_-	hypothetical protein	NA	NA	NA	NA
WP_011373393.1|1861079_1862348_-	AAA family ATPase	A0A218M6E3	Flavobacterium_phage	4.4e-35	30.6
WP_011373394.1|1862398_1863643_+	diguanylate cyclase	A0A2D0W9B6	Bordetella_phage	4.7e-05	34.9
WP_011373395.1|1863639_1864752_-	hypothetical protein	G3MAV6	Bacillus_virus	1.7e-30	27.0
WP_011373396.1|1864759_1865755_-	AAA family ATPase	G3MAU6	Bacillus_virus	2.1e-61	38.5