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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_008358 Hyphomonas neptunium ATCC 15444, complete sequence 1 crisprs csa3,cas3,WYL 0 2 4 0

Results visualization

1. NC_008358
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008358_1 664093-664218 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_008358_1 1.2|664171|24|NC_008358|CRISPRCasFinder 664171-664194 24 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 144461-144484 2 0.917
NC_008358_1 1.1|664117|30|NC_008358|CRISPRCasFinder 664117-664146 30 NZ_CP032091 Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence 569427-569456 7 0.767
NC_008358_1 1.1|664117|30|NC_008358|CRISPRCasFinder 664117-664146 30 AP014163 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C60A-MedDCM-OCT-S29-C62, *** SEQUENCING IN PROGRESS *** 22360-22389 7 0.767
NC_008358_1 1.1|664117|30|NC_008358|CRISPRCasFinder 664117-664146 30 AP014161 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C60-MedDCM-OCT-S34-C102, *** SEQUENCING IN PROGRESS *** 12820-12849 7 0.767

1. spacer 1.2|664171|24|NC_008358|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

ttcttagccggggctgctttttta	CRISPR spacer
ttcttagccggggcagcttttttc	Protospacer
************** ******** 

2. spacer 1.1|664117|30|NC_008358|CRISPRCasFinder matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gctgccttggctttcactgcaggctttttc	CRISPR spacer
tcttgcttggctttcactgcttgcttttgt	Protospacer
 **  ***************  ****** .

3. spacer 1.1|664117|30|NC_008358|CRISPRCasFinder matches to AP014163 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C60A-MedDCM-OCT-S29-C62, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

gctgccttggctttcactgcaggctttttc	CRISPR spacer
tctgccttggcattcactgcagttttcgac	Protospacer
 ********** ********** .**.  *

4. spacer 1.1|664117|30|NC_008358|CRISPRCasFinder matches to AP014161 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C60-MedDCM-OCT-S34-C102, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

gctgccttggctttcactgcaggctttttc	CRISPR spacer
tctgccttggcattcactgcagttttcgac	Protospacer
 ********** ********** .**.  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 532985 : 541944 6 Burkholderia_virus(16.67%) protease,transposase NA
DBSCAN-SWA_2 798389 : 807446 9 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_3 1995199 : 2003211 8 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_4 2130087 : 2136652 8 Staphylococcus_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage