CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007799	Ehrlichia chaffeensis str. Arkansas, complete sequence	1 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_007799

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CRISPR-Cas detection and classification

Crispr_ID: NC_007799_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007799_1

1175478-1175568

Orphan

Consensus_repeat	Method
AGCTTTTGCTATAGTAAATCAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007799_1

>merge|NC_007799|1|1175478-1175568|CRISPRCasFinder
AGCTTTTGCTATAGTAAATCAAAAAGGTGGTGTAGGAAAAACAACAACTAGTATAAACTTATCAACAGCTTTTGCTATAGTAAACAAAAAA

>NC_007799|1|1|1175478-1175568|CRISPRCasFinder
AGCTTTTGCTATAGTAAATCAAAAA	GGTGGTGTAGGAAAAACAACAACTAGTATAAACTTATCAAC
AGCTTTTGCTATAGTAAACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007799.1\|WP_006010636.1\|1174463_1174871_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NC_007799.1\|WP_011453045.1\|1173191_1174457_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NC_007799.1\|WP_011453037.1\|1163967_1164813_+\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NC_007799.1\|WP_011453040.1\|1166212_1167049_-\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NC_007799.1\|WP_006010634.1\|1174867_1175332_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|223396
NC_007799.1\|WP_143485407.1\|1167526_1167892_+\|hypothetical-protein	unknown	unknown	unknown
NC_007799.1\|WP_044233249.1\|1172226_1172772_-\|hypothetical-protein	unknown	unknown	unknown
NC_007799.1\|WP_006010644.1\|1169187_1171776_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_007799.1\|WP_011453038.1\|1165214_1166030_-\|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|366729
NC_007799.1\|WP_006010646.1\|1168353_1168782_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007799.1\|WP_006010636.1\|1174463_1174871_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	8.28312e-48
NC_007799.1\|WP_011453045.1\|1173191_1174457_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NC_007799.1\|WP_011453037.1\|1163967_1164813_+\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	8.22926e-126
NC_007799.1\|WP_011453040.1\|1166212_1167049_-\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	5.37663e-42
NC_007799.1\|WP_006010634.1\|1174867_1175332_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|223396	COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only].	7.45116e-36
NC_007799.1\|WP_006010644.1\|1169187_1171776_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_007799.1\|WP_011453038.1\|1165214_1166030_-\|P44/Msp2-family-outer-membrane-protein	gnl\|CDD\|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	5.688e-100

>NC_007799.1|WP_006010634.1|1174867_1175332_+|rRNA-maturation-RNase-YbeY
MIEINIYYRKWYNIINKPKSFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLNKYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPYVPRET
>NC_007799.1|WP_006010636.1|1174463_1174871_+|EVE-domain-containing-protein
MSYWLLKTEPQDFSWDDMVRDNVTVWDNVLNYQAQNYLKTMKYNDLAFFYHSGKEKGIIGIVSIDKEFYLPNTNNKFGVVEVKTHIKLNKTVFLKDIKSNPTLKTMLILKQPRLSVSQVTEQEWNCILHLGETIL
>NC_007799.1|WP_011453045.1|1173191_1174457_+|cell-division-protein-FtsZ
MSLNICLPDQSLLRPRITVFGVGGAGGNAVNNMIQSNLHGVNFVVANTDAQALELSLSEKKIQLGIGLTKGLGAGSLPEVGRGAAEESINEIIEEISDSNMLFITAGMGGGTGTGAAPVIARVAKENKILTIGVVTKPFHFEGAHRMRTAEFGLEELQRYVDTLIVIPNQNLFRIANEKTTFADAFKLADTVLHTGVRGITDLMVMPGLINLDFADIRAIMSEMGKAMMGTGEAEGENRAIAAAEAAISNPLLDNISMKGAKGILINITGGLDMTLFEVDAAANRIREEVDSHANIIFGSTFNKESEGKIRVSVLATGIDNEEVVIQNKSALKDKEAHNDKLSETSSKPFNPLDNEIAYYKPSNPGEDMIHSINHTKKQDHNIENQKSNNKIPESAYKMQFNKNEYWDEESFNIPTFLRKK
>NC_007799.1|WP_044233249.1|1172226_1172772_-|hypothetical-protein
MNTDYDFCQVDFLIQQNGHSNIDVYHGKLHINAQGDEYYASGDIANDVTGDKGVINIINHGTNGVYGDVYCGKCDLQITLEHHDPATDIKNVTSINKTFLISILSGFDACLLVDEHNLLLTDPSKGAGVNDEPVVSILLHNGTDANMIRDSFNKDYKIFQDEGKTYKYVYVDQERMASIEK
>NC_007799.1|WP_006010644.1|1169187_1171776_+|preprotein-translocase-subunit-SecA
MLSIAHKIFGSTNSRIIKSFHKVVQDINAIEHEIQLLSNEALKHKTIEFKEELKNGKTLDDILVPAFAVVREASKRVLNMRHFDVQLIGGIVLHKGMISEMKTGEGKTLVATLAAYLNALEGKGVHIVTVNDYLAKRDAEWMGELYSALGITVGCILTETNDLERKNAYNCDILYSTNNNLGFDYLRDNMKFSRDEMVQRGFNYAIVDEVDSILIDEARTPLIISGQVDQDIKMYKKIDNLIYELAEEDYELEEKNRNIFLTEAGITKIENLLIQHNLISSNTSLYDIDNIIIMHYITQALRAHKMFAVDKDYIIKDGNIVIIDEFTGRMMDGRRYSDGLHQALEAKEKLNINSENQTLASTTFQNYFRMYTKLSGMTGTAETESEEFLGIYNLQVVQIPTNIPVQRIDLNDDIYCTEEEKFNSVIKFISECHKKLQPVLVGTVSIEKSEMLSKLLTKNKLKHSVLNARYHEQEAYIIAQAGIPGTITIATNMAGRGTDIQLGGNLKMLAKTALANITDKEAIEIKYKQLTEKVNRDKEIAIQAGGLCVIGTERHESRRIDNQLRGRSGRQGDPGLSKFFLSLEDDLLRIFGSDKIKGVLQKLGMKKDEAIQHTWISRSIEKAQHKVESRNYDIRKSLLKFDNVINEQRKVVFDQRNKILDSDSYDISIIYRDLNSDIVNSIIHDKYYNLDDDTYKALSSEFTRIYNITLDYSTISNFESKDKVLEHLNETVDEHFAQKIEEFTLKDQKAWDHVVKKVMIMSLDYLWRDHLAALDSLKCGINLRSIAQKDPLNEFKAEAFSMLENMMSKFYELIIQRLSHLKFDIELNDTQRIEYNIHHSKISRNEKCPCGSGKKFKHCHGA
>NC_007799.1|WP_006010646.1|1168353_1168782_+|hypothetical-protein
MDIFGNEFDVHVNANGTEYAGKMSIDSNGDFDVNLDLQDGVGTLGHLSGHISQSDDAANYIIEYIFDQCIIYPELPVLHSFNGQIVSPAEEGSIIFDNGDNIQISLHGLQEQPEEAIPAAEVEEAVPAEAAIPAAEVTENQQ
>NC_007799.1|WP_143485407.1|1167526_1167892_+|hypothetical-protein
MNDLDLYNETNISTETADYSHLPTSHLMNALNHDCVSRFEVKLSPTSVDNEYSVEFTFEQYKNNAEQDLLKLIVGEFGVNFDPEHHKLSLIDGDTSVILEEDMINSCLSCIKVVQKDHSAE
>NC_007799.1|WP_011453040.1|1166212_1167049_-|P44/Msp2-family-outer-membrane-protein
MRYRISVIILMLLLVPCCCFSGSLDVSDSLNSRLKPVFLGISYKLSAPLFSSFSIGETYRINGVKTDRVVGLKSDILLDADKAMKDFNNFNFSEEYVPKYDNNIFGLSFIFGYSFRNLRVELEGSYKKFDVIDTRNHLVDNNYRHIALVRSNPPTLYDYFVLKNDGVEFYSTILNICYDFAVDTNIVPFSCVGIGEDIIKIFDSIRFKPSFNSKLGINYLMSQDMLLFFDVYYHRVVGNEYNNIPVQYVSLPNPLNISTAAKLDMEYFGAEIGIKVFV
>NC_007799.1|WP_011453038.1|1165214_1166030_-|P44/Msp2-family-outer-membrane-protein
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPGLTKSIFALGLDKSSISDHAGFTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEPERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKSLNVNFCYDIAHGSIPLAPYMCAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHPATLTNVPKTTSASATLDTDYFGWEVGMRFTL
>NC_007799.1|WP_011453037.1|1163967_1164813_+|P44/Msp2-family-outer-membrane-protein
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNTTVGVFGLKQNWDGSAISNSSPNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVSYETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVFLKNEGLLDISFMLNACYDVVGEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNEFRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage