CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007798	Neorickettsia sennetsu str. Miyayama, complete sequence	2 crisprs	NA	0	0	1	0

1. NC_007798

CRISPR-Cas detection and classification

Crispr_ID: NC_007798_1

• CRISPR_ID: NC_007798_1
• CRISPR_location: 368122-368222
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_007798_1

Consensus_repeat	Method
TGTTGTGGATCTGTCGCACCTTGTTGAGTAGT	CRISPRCasFinder

spacers of NC_007798_1

>1.1|368154|37|NC_007798|CRISPRCasFinder
CTGAGCGGCTCCTTCTGATTGGGATTCTCCTTCTTGC

CRISPR arrays and Neighbor proteins around NC_007798_1

CRISPR arrays

The CRISPR arrays of NC_007798_1

>merge|NC_007798|1|368122-368222|CRISPRCasFinder
TGTTGTGGATCTGTCGCACCTTGTTGAGTAGTCTGAGCGGCTCCTTCTGATTGGGATTCTCCTTCTTGCTGTTGTGGATCTGTTGCACCTTGTTGAGTAGT

>NC_007798|1|1|368122-368222|CRISPRCasFinder
TGTTGTGGATCTGTCGCACCTTGTTGAGTAGT	CTGAGCGGCTCCTTCTGATTGGGATTCTCCTTCTTGC
TGTTGTGGATCTGTTGCACCTTGTTGAGTAGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_007798.1|WP_041917563.1|370452_371292_+|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl|CDD|235413
NC_007798.1|WP_011451832.1|358183_358894_+|uroporphyrinogen-III-synthase	unknown	unknown	gnl|CDD|119440
NC_007798.1|WP_011451854.1|378408_379782_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NC_007798.1|WP_011451843.1|368756_369191_+|acyl-carrier-protein	unknown	unknown	gnl|CDD|179197
NC_007798.1|WP_041917499.1|358986_360159_+|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|238923
NC_007798.1|WP_011451849.1|374462_374999_-|iron-sulfur-binding-protein	unknown	unknown	gnl|CDD|272875
NC_007798.1|WP_011451852.1|376570_377284_+|DNA-repair-protein-RecO	unknown	unknown	gnl|CDD|234622
NC_007798.1|WP_011451839.1|364993_365716_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl|CDD|379227
NC_007798.1|WP_011451838.1|363840_364764_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|234698
NC_007798.1|WP_011451837.1|363070_363745_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|212491
NC_007798.1|WP_011451827.1|355522_356650_+|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|376298
NC_007798.1|WP_011451835.1|361525_362551_-|GTPase-ObgE	unknown	unknown	gnl|CDD|274271
NC_007798.1|WP_011451834.1|360155_361325_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NC_007798.1|WP_011451847.1|372093_374184_+|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl|CDD|378762
NC_007798.1|WP_041917500.1|377766_378228_+|hypothetical-protein	unknown	unknown	gnl|CDD|226335
NC_007798.1|WP_011451844.1|369191_370439_+|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl|CDD|274452
NC_007798.1|WP_011451851.1|375358_376516_+|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl|CDD|234934
NC_007798.1|WP_011451829.1|356760_357672_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl|CDD|234893
NC_007798.1|WP_011451831.1|357890_358187_+|hypothetical-protein	unknown	unknown	unknown
NC_007798.1|WP_011451846.1|371336_371918_+|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl|CDD|131334

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_007798.1|WP_041917563.1|370452_371292_+|oxygen-dependent-coproporphyrinogen-oxidase	gnl|CDD|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	1.43318e-162
NC_007798.1|WP_011451832.1|358183_358894_+|uroporphyrinogen-III-synthase	gnl|CDD|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	3.55214e-19
NC_007798.1|WP_011451854.1|378408_379782_+|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	1.43094e-176
NC_007798.1|WP_011451843.1|368756_369191_+|acyl-carrier-protein	gnl|CDD|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.38241e-08
NC_007798.1|WP_011451829.1|356760_357672_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl|CDD|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	3.29005e-128
NC_007798.1|WP_041917499.1|358986_360159_+|EAL-domain-containing-protein	gnl|CDD|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.09755e-55
NC_007798.1|WP_011451849.1|374462_374999_-|iron-sulfur-binding-protein	gnl|CDD|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.28441e-16
NC_007798.1|WP_011451852.1|376570_377284_+|DNA-repair-protein-RecO	gnl|CDD|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	1.56381e-37
NC_007798.1|WP_011451839.1|364993_365716_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl|CDD|379227	pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase domain. This family captures members that are not found in pfam00310, pfam07685 and pfam13230.	4.24977e-60
NC_007798.1|WP_041917500.1|377766_378228_+|hypothetical-protein	gnl|CDD|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	3.62235e-29
NC_007798.1|WP_011451837.1|363070_363745_+|SDR-family-oxidoreductase	gnl|CDD|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.52662e-28
NC_007798.1|WP_011451827.1|355522_356650_+|phosphoglycerate-kinase	gnl|CDD|376298	pfam00162, PGK, Phosphoglycerate kinase.	2.77515e-133
NC_007798.1|WP_011451835.1|361525_362551_-|GTPase-ObgE	gnl|CDD|274271	TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. [Protein synthesis, Other].	9.3134e-170
NC_007798.1|WP_011451834.1|360155_361325_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	9.44741e-151
NC_007798.1|WP_011451844.1|369191_370439_+|beta-ketoacyl-ACP-synthase-II	gnl|CDD|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_007798.1|WP_011451851.1|375358_376516_+|deoxyguanosinetriphosphate-triphosphohydrolase	gnl|CDD|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	2.03185e-146
NC_007798.1|WP_011451838.1|363840_364764_+|tyrosine-type-recombinase/integrase	gnl|CDD|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.99976e-96
NC_007798.1|WP_011451847.1|372093_374184_+|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl|CDD|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.03985e-05
NC_007798.1|WP_011451846.1|371336_371918_+|TIGR02281-family-clan-AA-aspartic-protease	gnl|CDD|131334	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). [Protein fate, Degradation of proteins, peptides, and glycopeptides].	6.80464e-31

Protein sequences

>NC_007798.1|WP_011451839.1|364993_365716_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MASVLVLSGYGLNCEDETLRAFELSGFAGSVLHLDDLLNKPNKLCNHQVLAIPGGFSFADNTGAGNAFACKTIPLLEEVENFLNKDKLVIGICNGAQILTRLIKDLEVTFEANTSNQYQCGWQDIEVPESDSIWMRGIHEIRLPIAHGEGKLLPLDKTNLKVSVAMRYKQDVNGSYNRIAAVTAYGGKMLITMPHPERAVSLVQTDDYYLVREEYRRRYLPTPKDGPGMRIFKNAYDYFH
>NC_007798.1|WP_011451838.1|363840_364764_+|tyrosine-type-recombinase/integrase
MECKIDPSVFTILDEWTRWLGGVKCFSSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSKDLRAWLASRRKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRFKPNTLPRSLTFKEIIELIEKFSFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVADLTNSEIKIIGKGGRERMIRLLPIVRVALSDYIASCPFQPDAGGFLFLDRNGNKLCRTAVARAFLSIRRGFNLPDHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAESLMEKYKQFCLRDRD
>NC_007798.1|WP_011451837.1|363070_363745_+|SDR-family-oxidoreductase
MLQGKIVLVTGACNRIGASIARRFASEGASLILPVADLSDLDELNQDIKKLGGESILVQADILDVSQMESLKNAISGTSKKLDVLISTHFYTSEPNLLVDYEVDEWRRIVEENFSLNWYMLKNFDGLLKRSEHGRVVFLSLERIVGKNPLYFSPYVASSAALAQLMKGYANDVLNYGMCVNMVALEGYEEDISVEPQPKCAELFLSLSSVQCKISGRKHYVSYT
>NC_007798.1|WP_011451835.1|361525_362551_-|GTPase-ObgE
MKFIDEVKVFLKAGNGGDGCSSFRREKFVEFGGPDGGCGGDGGNVIFITDENLNTLLDYRHRVHLKAENGKPGRKSNKRGESGSDLVCKVPIGTQILTQDRVLLSDLEQPKQSFISAFGGKGGRGNATFKNSLNRAATEFTCGEPGEEKTVILNLKILADIGLIGLPNAGKSTFLSRCSNAKPKIADYPFSTLEPIVGIAKINNHEIVIADIPGIIEGAHKNLGLGVKFLKHIERCKALIYLIDGTEKDIYSVYTLLSNELSLYSKKLEIKEHFILITKSDLLGKDEVQEKCQYIREKTGKLTLHTGIDQELASSLKAAQKLVELHQPGNKSRGKYNPLEV
>NC_007798.1|WP_011451834.1|360155_361325_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKISILGSTGSVGCQSVDVVSRFYSGTIKVDALSCNSNHALLIQQARLLSPQKVFVADESSYKEVKTALGSQNIEVILDRGVEIGAALCDNDMLVVGISGIAALNPIYSAISQGIKVATSNKESLVCGGSLLLPFVDKIIPLDSEHHAVAKLLRSKPIMSVSGITLTASGGPFFRKEKRNVTVACALAHPIWKMGKKNSVDSATMMNKVLEVVEAHYLFRIPKEKISVLIHPEALIHGMVDFLDGSQHAFISLPDMRIGINNALAGLVGGGYESTYTYGRVPLATRKLTFYAAKEEEFRVLKFLGTDQEIVLSAVNDLAVEDFLAGKLDFHSIPDFISSGLDKFQYNKADVKNIGDVFSIYDKAQRVCRSDNSGSFVTKGYHPLVSGV
>NC_007798.1|WP_041917499.1|358986_360159_+|EAL-domain-containing-protein
MFEECNYLVKKRILQSKSGVFLVAKILNPLAYKVFSYEQRKCEGYLVELEKQMLSAGLNIIAFKPPVIVILESNGSSVWSIYEKLTEVASSVFQEYVSFAVGYYVFSFEVPNEVISKAFAAVSFGEKEGSGIVSYASCASRLKEFSNAVAKATVLHNALKNNELLNVFQPIVDTETSSVIFNEFLLRVKGEESIRDCIVAAEKTHLISVVDKFVFKRVVELLERHSDLRLSFNLSMLSASDELQTEEFLKSFATLQFIAKRLVVEITEGVLLHDTDRMFDFIFKLKSLGCAIALDDFGKNFYLPFSELEKLPIDYLKLDREFAGKIKTSKNASIFIKNILEIANNLNIKVVAEFVEDKSVFDLFKELGIRYMQGNYLHGASPELKDTVNA
>NC_007798.1|WP_011451832.1|358183_358894_+|uroporphyrinogen-III-synthase
MILITRPVEDAVYLQRRLQSLKIESLVEALFVVQPLWFDVATLVAAKVVVSSKNAIRALTWSNASNDLQLYTMSDNIARFAVSSGFSNVFSCSCHTAEELEAYVLSYFGKDERIIYLSGAEITRDIVSTCLEKGFRWVERRICYMMCPLKEFSGNVCVALRRKRITCVTLFSVQAAVLCKSLFLKHGISPDFFSYFVMSSRIASILDCDTVYVSSVPTLDALVDVIERHYYVEQRG
>NC_007798.1|WP_011451831.1|357890_358187_+|hypothetical-protein
MKKFGTALCQFDRDLILQYGGARFLIYYHWGKIVGEDKRFDGITVRRVSYSSTGSIIVYVCARNSGNAVKLRHCINELEERIKLYARIGGGIRVVLSL
>NC_007798.1|WP_011451829.1|356760_357672_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQIFVACPRGFCAGVERAIETVEIAIRRYPEKKIFVYHEIVHNSRVIQDFKARGVDFIEDITKVEPKSVLIFSAHGVSEEIEKYVKSLDLVLVDATCPLVSKIHREVQRFEKEGFIILVIGNRNHAEIIGTVGRTKTQAYIVQDPEDIDNLPSITGKLAYVTQSTLALEYTSTMINKIKEKFPNVVGRSDVCYATQNRQEAVKALAKEVDLMLIVGSTNSSNSRNLMQVSSKICQKAFLIDNYNEVEPDWFEGVDRVGISSGASAPEILVQDLVSFLKKRFPSAEVSDFKFKEEKVQFKLPII
>NC_007798.1|WP_011451827.1|355522_356650_+|phosphoglycerate-kinase
MVDVEDVKDCRVVLRVDFNVPVNQEGLITDFSRIAVVLPTINLLLKNGCAILLLSHFGKPTAAIKEKFSFERIIGQICQFTGLDIRVVSDLSNELLLRQGEIILLENVRFFAGEVENDSKFAMLIARHGDVYVNDAFSVSHREHASVVGIPQFLPSAMGLAFLREYQELDSAATKGTVAVIGGSKISTKLPLIRGLLKKVKMVILGGALVNVILRSRGYNVGKSMCEDCHCDITLPELFIPFDFVTSHGVEDQNFHFTDARMIPHNEMILDIGPASLIAMKGILSKAEKILWNGPIGAFEFEPFCSGTHELARFISFLTKNANIKSIIGGGDTLAAIKSLQEPCFSYISTSGGAFLKFQEEGTLPGIEAIKKCKV
>NC_007798.1|WP_011451843.1|368756_369191_+|acyl-carrier-protein
MGATQEKLRKIVLEHTVKVSVMGALNLSDEKYDEIKLETDLSSELGIDSLDAAEIIMRVEEDHDLEEIPEDYARKANTVKHIYDYLLEHCTKPLDKLVDFTKKDVLFNKFLASVAVSFNCELANLEAVSSMSDLVSVLISASAK
>NC_007798.1|WP_011451844.1|369191_370439_+|beta-ketoacyl-ACP-synthase-II
MSKRVVVTGLGLLTCLSSTRERSWALILESRSGVRALSTIETEGLPVTIGGEVLENGEDGFDCKKFSDPRKHDRYISYGIAASREAVQHSQLLEYPSLDKRRVGVSIGSGIGGLPLIEKNSILLREEGIRKVSPFFIPASLINLTSGNVAIENGFTGPNDALVTACATGAHAIVNSWRIIANDEADVMIAGASEGALCRVGIAGFANMKALSRRNDEPEKASRPWDVDRDGFVMSDGAGVMVLEEYGHAKRRGARIYAELVGFGVSGDAYHVAAPNPNGDGALAAMASAIKMAGIGLDEIDYINAHGTSTPNGDAAELNALRRLFGSSLGMGVSSTKSSIGHALGAAGGIEAVLCVLAMRDSVMPPTLNLDKPDDCASGFNLVPHTSQEKNLRYVLSNSFGFGGTNVSLLFGQYS
>NC_007798.1|WP_041917563.1|370452_371292_+|oxygen-dependent-coproporphyrinogen-oxidase
MLSEKKETAAAWFRELRDCIRDEFVAIEKEFDHNFRSGFAVESWEREGGGGGEMSLMYGTVFEKIGVNISTVHGVFSEDFASKIPGALESGGNFWASGISLVAHMSSPLVPAVHMNTRMIVTDKYWFGGGADLTPMYYNEEDAKTFHAEFKETCDRHDSKYYNEFSKWADEYFYVKHRNEPRGIGGIFYDYLRTDDWEKDFAFTKDVGKCFLSVYPKIVRRNMHLSYTNEQRQFQLLKRGRYVEFNLLYDRGTEFGLKTGGNVKAILMSLPPVVEWRDF
>NC_007798.1|WP_011451846.1|371336_371918_+|TIGR02281-family-clan-AA-aspartic-protease
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGEIYEKVQSGISNEQVGFRKARDGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDPRTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSVSGVREQERSLLGMSFLKHFDFFIKKDVLFLLQK
>NC_007798.1|WP_011451847.1|372093_374184_+|inverse-autotransporter-beta-barrel-domain-containing-protein
MKNFRSVSKARLLFFLSGFCLVVPTALDASNLKNYDKSVTEGGYSEEKGVYYKKVAATGLLNKVGTTFSGLRNSKISDEKRFVDREGNAIQFNCTPHDSRGDSLQSAIQAGKSQGRVSELARNLPQAERSTLNAYRVNVFAPEKVVTQSDLNNTSRHTVGARFTVTNEFSDSNGGAVSMSEFGALLPLLSKVDNLIYIDLKSKLYDAKEGEVSTGIVFRRQMSPLLTGGINVFTDVRFLPEGNYRWYSLGGEIFFKSFSLNGNYYRSNKKTTISSVKSFEFHDPDPGKAVIVLDERAAGNGYDLGLGLTLNKYINIHGSAFFFYSPYNTEEKFSGYRAGVDLSLYLNERFSVLVSPEFVADSKRNRFLVNVGFNLPVGRDYTRLLGHVRRDRDIVLFDTNNSYNVNSAFLVADKEYQVGKLIKFSPNDQDAIKKLTNKTENPSASTAAKNEESKVGLDLFLIRDAEKSKEVSSEGVNSKEISLTEGAKELMLSDETTLKVYIPYSGGERIVNYFIPKSEVTIKLGGKDQSDSTGTTYKSLLFNGARVELDDPTKYTMEDVTFNSCFVSSNKERPFQDDKGVLLMNSKLEFSHDNLKSAFYSTKSDTKDERPVVSYILKNVHIELPKVVHDPKNPVKDDFKALFTGDLDKMGKIDVKLAGEIKVDTKTSIDARKKAEEEVKAPVSEGKGSGEASSAA
>NC_007798.1|WP_011451849.1|374462_374999_-|iron-sulfur-binding-protein
METEKKISLTDAALKRILAITESEECLSVTVEPGGCNGFEYKFEIKSCDKTVLRPNRNLFKENNSLNTADPLMHEQSMIFKCDVEAARSTASRSQSEGEPYHNQNPTGTIQDEMIHTSKEGKYYVTWNGRTILEIDNASLELIRFAKLDYVRELVGERFVIKNPNSQSTCSCGNSFSI
>NC_007798.1|WP_011451851.1|375358_376516_+|deoxyguanosinetriphosphate-triphosphohydrolase
MLSSYSSFPERSKGRLFLEKEDPQRDCYQRDRDRLIHSSAFRRLMYKTQVFSHCGDDHYRTRLTHSLEVAQIARSIARLLGLNEDLTETIALAHDIGHPPFAHIGEEALQEVAAEHYRFEHNAQVLRILGEFEHQYMDFDGLNLTWETIEGLAKHNGPIQEPHQIIEEYNGLLDLELNKQPSLEAQIVSLADDIAYSSHDIDDGLLSGVITYQDLRHLPIIGENILKFEKTFPEASKSQVMYKARRRMIRFLIYDVVDVARENIKRYLLKTVDDIRELGFPAANFSEKVGKEMKEIKAFLYNNLYFYYSIRKSRVKLKRIVKELFEVFFHDPQCLPKDYYERFRIADSMNKKAQLVCDFIANLTDSSAIREHRQFFSTCVLERDY
>NC_007798.1|WP_011451852.1|376570_377284_+|DNA-repair-protein-RecO
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQLGYFRVEVKEIISPFLFTDYKKLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNTLCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYISPKTGRAVTKAVGEAYKDKLLLLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI
>NC_007798.1|WP_041917500.1|377766_378228_+|hypothetical-protein
MKEIKYKALVNAAMLGIVRSVMKDVSAGEAANFFITFSTRNTSLSDGLKKKYPREMSIILQNQFSDLQVSYEKFSVVLSFSGVEECITVPFSSILYFLDRECNFALEFHDLASEGSVDEVDFCNAGGAYVPGTNAKGEQQGKIIDITNMLKKK
>NC_007798.1|WP_011451854.1|378408_379782_+|dihydrolipoyl-dehydrogenase
MYDVIVVGGGPAGYPAAIRASRSGLKVALVEKNKLGGVCLNCGCIPTKALLHIAEKYHFVKTGAAELGINVSNVFLTFSSAIAYAQEKIKKLAAGVSYLMKKNKVELFYSSGRILPGKQVKLEDLGKTISAKNIILATGSTPKEITGLEYDHELIWNYNDAMTATKMPKSLLVVGAGAIGVEFACIYNVFGSKVTVIEMQNQILPAEDTEISNLAEAAFKESGITIRKGTTIQSLKKDKDKVLVTLSDGTNLEVERILVAGGVEASSQNLGLEQIPTIRMNKGFVSVDKYCETGEPGVYAIGDLRGFPCVAHKAIYDAYVCTAKIAGKEPVPLEMDSIPSCIYSFPSIASVGLTEEAAIRMGHKVKIGRAKAEGNGKSVVLGKDKGLVKTVFDAKTGELLGAHIIGYEATEILNGYIIAKASEATVESLKAVVFPHPTISEMMYEAVLAADNEEVHS

Crispr_ID: NC_007798_2

• CRISPR_ID: NC_007798_2
• CRISPR_location: 828107-828257
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_007798_2

Consensus_repeat	Method
AAAACAACTAACACCTGCAAGTTAAGCTAGGATCGCTGAACATTCTAATACAGC	CRISPRCasFinder

spacers of NC_007798_2

>2.1|828161|43|NC_007798|CRISPRCasFinder
TGCTGACAGGAGTATACTACTGAATATTTAAAAAAGCCCTATG

CRISPR arrays and Neighbor proteins around NC_007798_2

CRISPR arrays

The CRISPR arrays of NC_007798_2

>merge|NC_007798|2|828107-828257|CRISPRCasFinder
AAAACAACTAACACCTGCAAGTTAAGCTAGGATCGCTGAACATTCTAATACAGCTGCTGACAGGAGTATACTACTGAATATTTAAAAAAGCCCTATGAAAACAACTAACACCTGCAAGTTAAGCTAGGATCGCTGAACATTCCAATACAGC

>NC_007798|2|2|828107-828257|CRISPRCasFinder
AAAACAACTAACACCTGCAAGTTAAGCTAGGATCGCTGAACATTCTAATACAGC	TGCTGACAGGAGTATACTACTGAATATTTAAAAAAGCCCTATG
AAAACAACTAACACCTGCAAGTTAAGCTAGGATCGCTGAACATTCCAATACAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_007798.1|WP_011452316.1|833728_834430_-|UMP-kinase	unknown	unknown	gnl|CDD|239787
NC_007798.1|WP_011452304.1|824861_825506_+|HAD-IA-family-hydrolase	unknown	unknown	gnl|CDD|372595
NC_007798.1|WP_011452299.1|822372_823299_+|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
NC_007798.1|WP_011452314.1|832469_833162_-|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl|CDD|259850
NC_007798.1|WP_081430827.1|826333_827101_+|VacJ-family-lipoprotein	unknown	unknown	gnl|CDD|377309
NC_007798.1|WP_011452318.1|835331_836228_-|30S-ribosomal-protein-S2	unknown	unknown	gnl|CDD|235396
NC_007798.1|WP_011452317.1|834436_835309_-|translation-elongation-factor-Ts	unknown	unknown	gnl|CDD|236491
NC_007798.1|WP_011452297.1|821997_822132_-|50S-ribosomal-protein-L36	unknown	unknown	gnl|CDD|179138
NC_007798.1|WP_011452315.1|833158_833716_-|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NC_007798.1|WP_011452308.1|827747_828050_-|DUF2610-domain-containing-protein	unknown	unknown	gnl|CDD|371344
NC_007798.1|WP_011452309.1|828563_830048_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|130902
NC_007798.1|WP_011452302.1|824043_824565_+|cytochrome-b	unknown	unknown	gnl|CDD|225580
NC_007798.1|WP_011452311.1|831329_831578_+|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl|CDD|377166
NC_007798.1|WP_011452296.1|821204_821948_-|hypothetical-protein	unknown	unknown	unknown
NC_007798.1|WP_049821618.1|820416_821181_-|hypothetical-protein	unknown	unknown	unknown
NC_007798.1|WP_011452307.1|827084_827693_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|377516
NC_007798.1|WP_011452312.1|831655_832273_-|phosphatidate-cytidylyltransferase	unknown	unknown	gnl|CDD|366491
NC_007798.1|WP_157858732.1|825600_826344_+|uracil-DNA-glycosylase	unknown	unknown	gnl|CDD|381680
NC_007798.1|WP_157858692.1|830194_831325_+|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|341454
NC_007798.1|WP_011452320.1|836411_837104_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl|CDD|234689

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_007798.1|WP_011452316.1|833728_834430_-|UMP-kinase	gnl|CDD|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	5.28012e-125
NC_007798.1|WP_011452304.1|824861_825506_+|HAD-IA-family-hydrolase	gnl|CDD|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	3.56432e-30
NC_007798.1|WP_011452299.1|822372_823299_+|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.76031e-81
NC_007798.1|WP_011452314.1|832469_833162_-|di-trans,poly-cis-decaprenylcistransferase	gnl|CDD|259850	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases. Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.	1.14479e-109
NC_007798.1|WP_081430827.1|826333_827101_+|VacJ-family-lipoprotein	gnl|CDD|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	1.55949e-51
NC_007798.1|WP_011452318.1|835331_836228_-|30S-ribosomal-protein-S2	gnl|CDD|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.71981e-138
NC_007798.1|WP_011452317.1|834436_835309_-|translation-elongation-factor-Ts	gnl|CDD|236491	PRK09377, tsf, elongation factor Ts; Provisional.	9.95171e-96
NC_007798.1|WP_011452297.1|821997_822132_-|50S-ribosomal-protein-L36	gnl|CDD|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	0.000169728
NC_007798.1|WP_011452315.1|833158_833716_-|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.41414e-71
NC_007798.1|WP_011452308.1|827747_828050_-|DUF2610-domain-containing-protein	gnl|CDD|371344	pfam11020, DUF2610, Domain of unknown function (DUF2610). This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed. This domain is related to the Ribbon-helix-helix superfamily so may be a DNA-binding protein.	1.3701e-48
NC_007798.1|WP_011452309.1|828563_830048_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl|CDD|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.20868e-100
NC_007798.1|WP_011452302.1|824043_824565_+|cytochrome-b	gnl|CDD|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	8.98248e-36
NC_007798.1|WP_011452311.1|831329_831578_+|succinate-dehydrogenase-assembly-factor-2	gnl|CDD|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.12843e-19
NC_007798.1|WP_011452307.1|827084_827693_+|ABC-transporter-substrate-binding-protein	gnl|CDD|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	1.23667e-19
NC_007798.1|WP_011452312.1|831655_832273_-|phosphatidate-cytidylyltransferase	gnl|CDD|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	7.16392e-34
NC_007798.1|WP_157858732.1|825600_826344_+|uracil-DNA-glycosylase	gnl|CDD|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	8.11994e-95
NC_007798.1|WP_157858692.1|830194_831325_+|iron-containing-alcohol-dehydrogenase	gnl|CDD|341454	cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer.	3.57576e-53
NC_007798.1|WP_011452320.1|836411_837104_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl|CDD|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.81908e-102

Protein sequences

>NC_007798.1|WP_011452308.1|827747_828050_-|DUF2610-domain-containing-protein
MKKFTVPCQFGSQTAPFTIYIGSPRRDTHPIYNQATWLSKERGGVVPQKVMDSLSKLRELAEENNVSFEDLCVYALKVAEQEETQPKEEEFAFDGKQTNE
>NC_007798.1|WP_011452307.1|827084_827693_+|ABC-transporter-substrate-binding-protein
MRHSNKEKWLIWLLFITLFFPSRIFAQGSTGEFISSLYTDVTTISNSNISELDKLQHMTNLIEENIDFQRVVRFVLGRNINKLSLEELQAFTEGYKRTTSIKYAKLMIKKLRYYKILREENLGNQRHLVQTVLQEKLESSVPLRIDYLVTVEDKKYKILDIIISGSISMAMADREEIESFLQDNTSEGLLAKIIETQPSDKT
>NC_007798.1|WP_081430827.1|826333_827101_+|VacJ-family-lipoprotein
MVFNFSGVNRFFLILFALASLTLTPRLGKTTEELDILFYYPKTTSTVVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLNIADNLSEPSYVINHFLQGNPKNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKTLIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLVIQHKFVPFTVYNCSQIAREIDYYDIVFENSIDPYIKLRTFLVNYDAAFK
>NC_007798.1|WP_157858732.1|825600_826344_+|uracil-DNA-glycosylase
MILKFYDRLGMDTMTADISSPNQASITQVGGMPIDMKESAESTARKHKTPERDLTYVTTLGELKALVYNFEGCQLKKSAKNTVFCDGNPDAKIMLIGEAPGEQEDKLGIPFCGRSGNLLDKMLQAIGLDRTKVYITNAVFWRPPGNRRPTPEEIEICKPFLEHHIRLVLPKLIVLLGSTAASSVLKSQDRISTLRNKLHEYKNPFIREGITTTVMFHPSYLLRQPAQKKLAWEDLKLIRSYIDTHGL
>NC_007798.1|WP_011452304.1|824861_825506_+|HAD-IA-family-hydrolase
MNEKLNTKAKVTPEAILFDWDNTIVDTRVMILNAVNKTLSHFGKPALDRDMNAPERMDFFKQTFGEEWVFAYSLFTDHLRSENPGPLQIFPGFTSFLDLIAERRIFTGIVSNKYNELLKKEVDSLGLTDRFDVIVGSGDTDQDKPSAKPLLYALSIGNITPSKETVLFIGDSATDMECARNATVRGIAYRATPIEGFENIPIIRHYDQAKILIP
>NC_007798.1|WP_011452302.1|824043_824565_+|cytochrome-b
MPSPEKYNLTLRILHWILAFAVIAMLVSGFTMSSYLTPPLKFIVYGKHKAIGMTVGVLMIIRLAIRVCFNIPETQFSRLENIVLGVVHSLLYVLTIGAVFSGYLMSCSAGKPVSWFGIFEFPSLFQQNPDIAKIAHDAHQVIIYLLACLVVLHILATLKHLIIDKENIFKRIF
>NC_007798.1|WP_011452299.1|822372_823299_+|4-hydroxy-tetrahydrodipicolinate-synthase
MQGLRSIFKGIFTAIITPFKRNTLDVESLERLIEIQVASAVDGIVIADSTGEGHSLSQSEYCTLVKNVAAVLKNRVPLVVSVPHCSTTQAIDVITHLKNKTIEAFLVAAPYYLRPQQEGIFEHYRQITNKTKANIIMCNIPHRCAINVENATTLKIMDLPAISAIVDLSGDLEYPTILRRENDRVPILTGNDTTYAAHRLNGGDGIVSTLSNLIPKEMVTLERAIYKGNYENIKKLHKLIFPLAKSMSCETNPIPLKYAVSCIYKYVTPNVRLPLTDATTLTRQLIHTLLSNLEREKQEHEILSLIQS
>NC_007798.1|WP_011452297.1|821997_822132_-|50S-ribosomal-protein-L36
MKVIGSLKSAKKRDARNSYVAKRGKRIYVYNRKNPRCNVRQGSK
>NC_007798.1|WP_011452296.1|821204_821948_-|hypothetical-protein
MLLSFFLVPLVYASFAGVVAFAVAPLQYLKIIRQETAASYSSIFFNAFGKSGAVGVFFSGVFPYVTMNFLANLSFGLSDRISEIVLPVQYGILVGIFVRAFLGGAIETVLTIYPEVREIVRNKGDLAFGKGRALSILFPAFLRNSVAWLGATSSYEIATRLYLSMNMSLLLSIILGLVFGILSIPLDVMVTQSCAAKEELTLVKRVLLVATDSSSKFLLGSTIRILQISIYTAVTVLTTFILRYFGI
>NC_007798.1|WP_049821618.1|820416_821181_-|hypothetical-protein
MFLQLYDVILGGVFFGSFAAVAAVLMSPLQFLKIMRQQTRASYRKIALDALSDGGVAPFFRGALPYAVMNFLSSMSFGISEAVSGIVLKLFFHPTILFVVFFRSMMGGFLETLFSMWAEMCEISRNKGALMENKATFRGIALPILLRNMIFWSASVASYEISIAYHMNLFGGTAIGLVFGIFAALFSIPLDVLATRNCGARVRLGILACAKSALLGEEDARYLLYGTVIRVIQIAMFTLVTLLTMFAFEAVFHS
>NC_007798.1|WP_011452309.1|828563_830048_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MIKKITDSAKSGKLKILDFLTSGFKRTLHSSVKIVDQSISFFQNKKTNELKALTKNARITGTVVLIGFFGIFGMWAVFAPIDGASLAMGEIVISSDKKSVQHLEGGIIEEIFVHEGDHVTEGQVLMTLKNVGNKAQLSILEENQISLLATEQRLLAHIGRKANMELPNIEKLEYVTEEKKSDTIKNQVLLFESNKESFANKVRIIDKKIGQIQNEVLALKAQLESAEKNIQLLEEELEAKRSLYDEHVIDKTKIVSLERERISWNGKIAEYKALIARGEQHVTEAELEKIQVENSFNSELAAQLKEVSHAIHENMQKLTAAYDLMLRTIIRAPQSGIVTGLRSLSIGGVIPPAISLMEIVPENEDMFIEAKVAPNNIEAIVSARLVKKNLSEVEGYIGVRTRVKITAFNSKKVGILKGVMTYISANTILDPRTGMHYYLAHIRIPKSEIAMINARTKLYPGMPAIVFITTESRSFLSYLLAPIIGTFDTAFRER
>NC_007798.1|WP_157858692.1|830194_831325_+|iron-containing-alcohol-dehydrogenase
MNYKLTGIKEILSGNHLISNLQDLIQLREALVVCDQNTFRFLPAWIKGEKNFKLIVLPKNVRPYEALVRKLAIHVRNCELIVALGSGTITDICKYLANLTTKELVLFPSAPSVNAYTSPTASIISLEKTRKVSVKAKMPTCIYLDYTILKSVPPRMILSGLYDLLCSRTAKVDYFIASITLKHSYIGKIFEELLPYEEILLKHSKLLIRGDTTLVSILMHALNLSGLGMWLNGDSRSASQGEHMLAHLLEKASGKYFLHGEMVAAGMLATSLLQERFFKKEQKIEFNTQVLNKYVMLKGLYPSKIDSFAESFQKLRMLSPVLSSMVSEHTQLRRHIGSTAITLPKVHNLLREAVFLKRNFTCLDIAYLAGYHTITL
>NC_007798.1|WP_011452311.1|831329_831578_+|succinate-dehydrogenase-assembly-factor-2
MNIDLRKKRILYRSTHRGCKEIDILLGSFITKNLSKLTEQEVEQVECILELSDSFIFDCYQGKVEPPEEFPILKRMVQEENR
>NC_007798.1|WP_011452312.1|831655_832273_-|phosphatidate-cytidylyltransferase
MKHYCDLKARVISAAVLLFLCALAICSGGYAVYSSVLLLAVLSYQEWQDMTANKGVVLRCLGLFVAILPNAALIGIHIEDVEILIWLIVCVVSNDVGAYFIGRIIGGVKLCKSVSPNKTVSGFLGGLLSTFVCGSTFAIVLGLSMNFVLLTLPIAVLATIGDLFESFIKRTCSVKDSGTLLPGHGGILDRVDGFIFSAPFLFFCL
>NC_007798.1|WP_011452314.1|832469_833162_-|di-trans,poly-cis-decaprenylcistransferase
MIGKELPVHIAIIMDGNARWARARGLCNSDGYKMGVEAAFSAVRASCNAGIRYLTLFLFSTENWKRNPDDVHLVFSIFEKASVTALDELCDANIKVKVIGEQVGLGESAKQVIKNLESGTAKNSGMYLCFALNYGGRSEIINAVSRMISDGLRAEEVDVQKFASYLYTDGIPDPDLIIRTAGEKRLSNFLLWQSSYSELYFCDTLWPDFTEKDLEIAMEAYKARCRRYGK
>NC_007798.1|WP_011452315.1|833158_833716_-|ribosome-recycling-factor
MLEDVIKETNDKLRSSYEVFLSDLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKMLSVQVWDKSTVGAVKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAKVAVRNIRRDAISRIKVLEKAKEISENDMHALLKKIDKIISEEDARIDDAVSKKETDILKV
>NC_007798.1|WP_011452316.1|833728_834430_-|UMP-kinase
MRRVLLKISGERLAARGVSVHDAEVIGMLARGIKRVHEMGIQVCLVIGGGNIYRGSSGIPNIDRATGDYMGMLATVINALALQGAINNLGVVSRVQSAIPMRSICEPYVRQKAISHMEKNRIVIFAAGTGNPFFTTDTAAVLRSVEMGCDVMLKGTLVDGIYSDDPRTNINAERITKLSYTDVLSKKLRVLDSSAVSIARDNGMPVVIFSLDSEMAFYEVINKQGNYSTIEGE
>NC_007798.1|WP_011452317.1|834436_835309_-|translation-elongation-factor-Ts
MSKINLEDLKSLSKETSAGLVHCKQALSEAHGDLTRAREILKELGHAVSVKKANRGARDGVVGALSSGKFGVILELNCETDFVARNEKFQQFAQSVLEAACAAKVKSVEECLSTPLPGGQKVRDAIVEQVAVFRENIVLSRCVTYEVSQSGLLGVYVHNKYTENLGKIGVAVAVVSEADPSFLSTVAKDIAIQVMSECPCAIDVARIPPNLLESEKHKYNLEVEGKPASVAEKIIAGKLSKFYKKVVLLEQPLFSDPERSVKQYISDKEMESSAKIDVVWYEVFVLGEAS
>NC_007798.1|WP_011452318.1|835331_836228_-|30S-ribosomal-protein-S2
MQSIFDRVTVKNLFEVGAHLGHKTRFWNPKMVSYIYGTSNAKTHIVDLQKTVPMLRTALNAISDVAANSGRVLFVGTKMQACDIIKEEATRCGQYYVNLRWPSGMFTNWNTVSKSVKKLVHYEKLLEQEGDVLSKKERLSINRKRERIEKYLGGVRKMGGLPNIIFVIDPKKEHIAVEEAWKLGIPVVAVVDTNCDPSKITYAIPGNDDSLRCIEYYCSLVADAVLVGIESELQRKQSKELDDKADEKAAKVSHSDGQKKGASIRAGTDKAALQKRKVSPKSEKQDNVDAAKLPENKG
>NC_007798.1|WP_011452320.1|836411_837104_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MEKDFVNEIFSSVSQKYDLMNDIMSGGIHRLWKRNLVKSIGLLPNQRVLDMAAGTGDITLRLLKTHIPVEIILCDKNHEMLEIAKDRLLDEGYVNLKVVSADAAQLPFEDCSFDHYVVAFGVRNFSNIERSLTEAYRVLKPGGRFSCLEFSKVKNKCMNSLYNLYSHTFIPWVGEKITKNRQAYTYLIESIQDFPDAETFCEIIRSAGFGRTKYRRETFGVAAIHTATKL

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	582930 : 593191	8	Erysipelothrix_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_007798|582930:593191|DBSCAN-SWA
ACTATACCATCAACATTCCGCCATTCACGTGGAAAGTCTGCCCTGTAATATAACTTGCCATATCACTGAGTAGAAGAGCGACAATACCACATAGTTCCTCAGGTAATCCAACCCGCTTCATCGGAATGGTAGGAAGTACTTGTGCAAGTTGCTCTTCGGTGAGCTTATCCGTCATGTTAGTCTTGATGAAGCCAGGCGCAATGCAATTCACCAGTACCCCTTTAGATGCAAACTCACGAGCAAAACTTTTTGACATACCTATGATCCCAGCTTTTGCGGCACAATAGTTCACCTGACCTGAGTTACCCATAACCGCAACGACTGAAGAAATGTTCACTATTCTCCCATATTTTTGACGCATCATCAGCACTGCAGCATTTTTATTGAGTATAAAACTTGACGTTAAATTGACATTGATAACCTTCTGCCACGAATCTAGCCCCATACGTAAGGACAATTTATCATCCGTGATTCCAGCATTACAAACTAAGCCGTCCAGACCACCTAGTTTTTCCTTACAGCCTTCTATGAGCAGGTGCACATTCTCCAAATCTGAAAGGTCCTGCACAATAACATGTGCTCCGCAATCAATACTTGCGTTCAGGGCGTGCAATTTCGCCTCTTTAGTGCCCGAAATAACAAGTCTGGCTCCCAAGGCATGAAGATACCTAATTAAAGCTTCTCCTATACCTCCAGATGCCCCGGTGACCAGTATGCGCTTATCACGGAGACTAAAACCCATCTCAAGACTAATAAAATAGAACCAGGAGGCAGTTTAGCACCATGCGTGCGCGAAAAACAAGAACAAATCGAGAATTATATACAACTGCTTACAAAACTTCATATTAACAAACCATTGGAAAAGCAAAATAGCTTTTGGGCGAGTTCCAATCACGTAAACTAACCATCCGTAGCAATCATAGGTCGTCAAATCCTTTCTACTGCTTTACACCATTTATAGACATCTAATTCATATAGCTTGCACACTTTGCTTATTGAAACCTTGCCCCATTCAAAGACTACGCAGAGATAGTATTAAAAGACCGTTTCATCATCCACACCACATAAAATCAGACTGCAATTCTGAACACTGGAAAGTCCCAATAGGGCGCCGTAGTCTCTACATTAGAAGAAATTAATTACCAACGACACACTTAACACAACAAAAACTTTATTCAGGTTCGCAATTCGTAAAAGAGGCAGCTTCTTTTCGTGCTACTCTATCAACAATTTCGTTATAATGATCACCATTATGAGCCTTAACCCACAACCATCGTACAGTATGTGCGGCTGCAATTCCATGTAGCCTGACCCACATTTCCTTGTTTTTTACAGCTCCTCCTGATGAGTTACGCCACTTATTTTTCATCCAACTCTCTATCCAAGCAGTGATACCTTTGTAGACATAAGTACTATCGGTGTATACAGTGACTCTTTTTCCTTTTTGTTCAAACGACTCCAGAGCTTTTATTACTGCAAGCAACTCCATTTTGTTATTTGTACTATCTGCCTCTCTCCCGGAAATTATCTTTTCGTTGGTACCTCTCTGAATTATCACTGCAGCCCAACCACCAGGACCTGGATTACCTAAACATGCACCGTCGGTGTATATCACGTATTCTTCCATACTTAAAACCCTAGATCGTCAATATCTTATCAACTCGGAATGAACAATGATATCGAATTATCCTTTTTCATGTGCATAACTTGATAACTCACCCACACCATAACAAGTACATAGCTTTTTCAGCACTGACAAAATATCGTTTGAAATGAACATACTATCCTCCATCCCATGGTGTCTCAACAAATGAGCAGCACATTCGGGCTAGAATTATTATTCATCTAGCTCAACAACAGCAGTCTATACACTATCCTTTTTTGCGCTGTCTAAATTCTAAATATATGTAGCCCATTCGGATTGAACTACGTGTCTAATTCGACAACAGCACTGACGCTATCTATTTCTGCACTATCCTAACACATTGTGTCCTATTTTGATTAGATCACCCGTATGACCCACACCTGTAACAGGGCAAGTAATGAAAGCAGACATTCAGGCACCTTTCATTGCGACAAGCACTAGTACTTCAAATGTGGCTTTGATTCCATCAAGACAAAGTCTCTCATATTCCGTTATGATTCTCTTGAGAGTGCCCATGGTAGTCATACCATAATTGATCCCTGAGATTGCACTACTTTGCGCAGTAGCATGTATGTCAGTGAAAAGCTTATATACACTCGAGTATTCGACGACTACTTTTTCACTTGTCACAATGGGAAGCACAAACCCAGCTCTTTGTATAAGTCTTCCTGCATCCTTAATGTGAATAAAAGGAGAAACTCTAGGCACAAAACCATCCCCACCCTCTGCATTGAAGATAGCTTGTTTGAGTTCTATCAATGTCTCAGGACCAAAAAGACTAACAAGACACATACCCCCAACCTTCAAAGACCTGTATATAGCTGAAAAGGCGCCTATCAAATCGTTCACATGGTGCATAAACATGCCACTTATGACAAGATCAAAATTATTCTCCCCAAGCTCAAAACTATCATCTTCGACGACAATTTTCTTACCAGATACGGACGCTAGCATTTCGTGACACACGTCCAGGTGAACAACATTTGCAAAAGAAAGATCCTCAAATTCTTTCAAACTGACAAGAAGTTCTCCCCTGTGGGCACCAAAATTGAGCACGTCACTGAAGCTACCACTTATCTTCTCAAGCAGAAGGGCATATATCTCCAGTAAAAGATAATAATGGGACGCATCCACCCCCGCAAAACGCTTCCTGCGAGCAATTATAGCTCTTGTATCGAAGAGACGCTTCAACTTTGTCTAAATTCCACACCCAAGATTTTATAGGTTTTCTTACCACTCGGGAGATCTATTTCCACGATTTCACCAACTTCCTTATTCATTACTGCCTTTCCGATTGGTGAGGACACAGATATTTTTCCTTCCTTTATATCAGACTCGAGGTTACCTACAATTTGGTAGATTAGCACGCTCTTACTTTCCATATTTTCTAGCGTCACGGAGGCACCAAATTTTACCCTTTCGCCTGTAAATTGAGAAACATCTATCACTTCTGCCTCTGAAAGACATAACTGCAATTCCCGTATTTTCCCTTCAACAAAACTTTGCTCTTTTCGTGCTTCATGGTATTCAGCATTCTCAGAAAGATCACCTAATTCTCTAGCCTGAGCAACTGCGGCTACAACTGACGGCTTCACCACTTTGACAAGCTTTTCTAGTTCCTCCTGAAGTTTACAATACCCCTCCCTAGTGATAGGTAACTTTCTCATCTTGTACCCTCCCAAAGACAAATATTATGCCAACAAAATAAAAGCAAGCGCCGTGATTCTACACCAAAATCCTCTAAGAGTACACAAATCATGGATTTCCCCTGGACCAAAATACTCAATAAAAGGGATGGTACACAAGTTTCCCTACCAGGGATTTTGCCATTGTTAGAGCAAGTCTGCGCAGCAGAGAACTACCCAAAAAGTAATTTCGGCATAATAAAGAATAGAAAAAGATTTCCAGCACAAAATTTTTGTAATACCATTTAGGCTTGTGTCACTTTTTTGTGAGAATGTCCGAGAAAGAGTTTGATGTAGTTGTCATAGGCGGCGGCCCCGCTGGATACGTGTGTAGTATAAAAGCGGCACAACTCGGTATGAAGGTTGCATGTGTAGAAAAACGCCCTTCTCTCGGTGGGACATGTCTGAACGAAGGATGTATCCCTTCCAAGGCGTTACTCCACTCATCCTACGCTTACTATTCTGCTAAAAAGTGCTTTGATGTTCTCGGAGTAGAATGCTCTGATGTAAAGTTGAACCTAACAAAAATGATGGGAAATAAATCCAGAATAGTGATGGAATTATCCCAAGGCATCGAGTTTTTATTCAAGAAAAATAAGGTTACTCGGTTTACTGGAACGGGCAGCATACTAGCCAATGGTGATACAAAAAAAAAATCCGTCATTATTGACAAAACTGAGACCATACACACAAAGTATGTTGTTCTTGCAACTGGTTCCGAGGCAGCTGAGCTTCCGTTCGCGAAGTGTGATGAGAAAAGCATCTTATCATCACGTGGCGCATTAGAGCTGGACGCTGTCCCTAAAAGCATGATTATCATTGGAGGGGGAGCAATAGGACTGGAAATGGCTTCCATTTGGTCAAGACTTGGCACTGAGGTCACCCTTATGGAATACGCGGACAGAATCGCAGCAGCCTCAGATGGTGAAGTCAGCGACTATCTTCTGAAATCACTAACAAAACAAGGTATAAAGTTCCATCTCTCCAGTAGGATTACAGAGATAAAAAAAGGAAAGCTTCTTTCTGCAACCTTTGAGAAAGATGAAAAAATAGGAAGTATATCAGCAGAAAAAATTCTAGTCGCCGTTGGCAGGCGTCCATACTCAGCCAATATTGGTGTTGAGCTGGAGAGGAACCCGTCTGGTTTCATAAAGGTAGATAAAAATTTCCAAACCAGCGTTCCTGGAGTATATGCCATAGGGGACACAATTCCGGGGGTAATGCTAGCTCACAAAGCCGAGGAAGAAGGGGTAGCTGTAGCAGAAATCCTAGCAGGTAGGACAGGCCACATTGGATGGATTCCATCTGTAATATATACTCACCCAGAAGTTGCAAGTGTAGGAAAAACCGAGGAAGAATTGAAAGTCATAGGTATAAAATACAAAGCCTCCAAATTTCCGTTTGCAGCTAATAGTCGGGCTAAAACGACTAACGACACAGGAGGTTTTGTAAAGATGTTAGTTGATGAGCACGACACCGTACTCGGTGTGCACATAGTCGGACCATCTGCTTCTTCACTTATAGCCGAAGCCGTCCTGGCAATGGAATATGGTGCTTCAGCGGAGGATATCGCGAGAACCTGCCACTCTCACCCAGACCTAAACGAAGCAATGAAAGAAGCCGCTCTAGGAGCATTTTTCAAGCCAATACATTTCTAATCATTCCAGGTCAGAATTACCTGGTATATGTTTGTTTTATAATCCACTCGCCTGGCGTGCGTTTGTTCGTTGCGTGTCGTAGAGCAATTTCTCCTCTATCTGTCATCGTAGAAAGTGTTTCCGTTACAGAACTTTGGCTAGCGAGCACATTGTCTAGAACTGAATTCAGTTTGGTAGCGTAGAACAACGACTCTCTACGGTCCACAACCGAAGGGAAAGAAGAAAATGATCCTAAAATAAAGAAAAAAACCATTAAGGTAGCGTAGCCGGGGACTGCAAGCCTTCCCTCTTTGTAAAAAAAGGTAACAACTGTAACACCAACAGTACTGGCCACCTGAGCCGCTACTTCAGCAACGAAAGTAGGTTGAGTGAATTTGTTTAGCTTTTTAGATGGAATACCGCTATCTTCTGAGGAAGACAAAATTATACAAGCTTTTTCGTATGCAGTTTTTATATTATTACACGTGCTACTTCTTGTATAACTTACGTATAGTACAGAAAAAGAAATAAAAACCTGCAGCAAAATGCTCGTTACCAGGAGTATATAAGTAACTTTCTTTTGCCCCCGAACCATGCTTAAGGCCATGGCTGCGCCCCTCAATATTGCTATAAGTAGGACTTCTACGAACACTCCACAATACTTAGTCCGTACGTTTTTCTTGCCCTTTGTACACTTCATTTTTAGACGTTCTGTTTTTTCCTCATGTTGGAATCCAATACCTTTTTACGCAACCTCAAAGACAACGGTGTCACTTCAACAAGTTCATCATCATTAATATAAGCCATCATTTCTTCTAACGTCATTAGCAAGGGTGGACTAAGCCTGACTGCCTCATCACTACCAGCAGCACGAATATTTGTGAGCTGCTTACCCTTGAGGACATTTACATCAAGGTCATTACCCCTGCTGTGTTCACCTACTATCATTCCACAGTAGACCGGATCCTGTGGCTTTACAAACATTATGCCTCTATCCTGTAAATTGAAGAGTGCATAAGCAACAGCTTCCCCTTGTCCATTCGATACCAAAACACCATTCGATCTACTATCTATCTTCCCAGAGTATGGTGCGTAGCCATAAAATACTTTATTCAGTATACCACTTCCTCTGGTATCTGAGTAGAACTTCCCATGATATCCAATCAACGAACGTGCAGGAATATGATATACCAACCTTACCCTTCCTCCCGGGTAGTTTTCCATAGATTGCATGATCCCTTTCCTTGTGTTTAGGGTCTCCATTACTATCCCTGCGTATTCTTCATCCATATCGATTGTAAGCTCTTCGATCGGCTCCATTTTTTGACCATTCTCGTCGATTTTTATCACTACCTTTGGCCGTGAAACAGATAATTCAAAGCCCTCTTTTCTCATGTTCTCGATCAGAACACCGAGCTGTAATTCTCCACGTCCCATCACTTCAAATTGTCCTTCTCCTCTTTCTTCCATTTTTATGGAAACATTTGTCTTCACCTCTTGTAGGAGGCGCGCCAAAATCATACGAGAAGTTAGTTTATTCCCCTCTTTACCAGTGAAAGGGGAAGTATTAACGGAAATGTTGATAGAGATAGTAGCGGGATCAATTGGAATAGCATCAATTGGTGTATTCACCGATGGATCGCATACAGTATCAGTGACCGATGTATCTGCTAAACCAGCGATAGCAATTATTTCGCCTGCTTCTGCATTCTCAACAACCTTCTTCACCATACCGTCAAAAATTTGCAACTTAGTTATGCGGGAATTCTCTAACAATTCCCCACTTAAATTTATTGCCTTTACGTGTGCATTCACTGAAATAGAACCCTGCTCTATCTTTCCAATTAAAATTCTTCCAAGGAAATTGTCATTTTCGAGCATCGTAACGAGCATTGAAAAAGGTGCTTCTCTATCATATTTCCGGACAGGAGTGTACCCTATTATTGTTTCCAACAGTGGTACGAGGCTTTCTCGCTGATCATTGAGATCACGGACACACCAACCATCTCTACCGGAGGCATACAGAACAGGAAAATCTAGTTGCTCATCATTCGCTTCCAGAGCAAGAAAAAGGTCAGATATTTCATTGATGACCTCTTCAATTCTCCTATCTGGACGATCAACTTTGTTTATTATCACTATAGGCCTCAATCCTACCTTAAGCGCCTTTGAGAGGACAAATTTTGTTTGCGGCATAACACCTTCTGCACTATCAACAAGTAACATAACAGAGTCTACCATTGACAGGATGCGCTCTACCTCACCTCCAAAATCCGAGTGTCCTGGTGTATCTATAAGATTGATTTTCACATTCCCATAAGATACAGAAGCAACCTTCGAGAACATTGTAATACCACGTTTCTGTTCCAATGGATTTCTGTCCATGCCGACCTCATCCAAAACATTGGCCTGCCTAAGCAGATTATTAGTTAACGTTGTTTTTCCGTGATCCACGTGAGCAATTACGGCTATGTTTAGAGTCTTGTTATTCATATAAACCCAGGGCTACTCGCGGAATTATAGCATCAAATAATCTTGAGAACATCGAGGTTTCATATAAAGATGCTATTTTTTTTATAAAAAAATGCAGTAACTTGAGAACACAGCAAATCTTGAAAACCACACGCAGTTCATCACAACGAAGAATCAAATTAATTAAGAAACTAAGAAAACCTTCCTAAAATTGAGGCAATTCCATCAAGTGAGGAGCCAACAGTACAAGCCGAGAATCCTATACAATATAAAACGTGACTAACCATCCATATGTAGTACAATTCACACTCTGATACTAGGGAAAGGTACTCAATGTCTGAAACCTTGATGATAATAGACGCATATAACTTCCTTTTTAGTGCGTACTTTGCTCTACCAAACCTTACACATAATGAACTGCCCGTAGGAGCAGTATACGGTTTCCTAAACATATTGCTAAAACACCTTCGAACCAAACCAGAATATTTAGTGGTTGCGCTGGATCATGGCAAATCGACATTTAGGGAGACTATATACAACAACTACAAAGCAAACAGACCTCCAGTTCCTGGAAACCTGACCCCACAGTTCGCTCTTCTTAGGGAATGTGTAGACGTTTTAAATCTTAATCCACTCGAAATTGAAGGCTTTGAAGCTGATGATGTCATAGCAACTCTGGTAAGAAAGTTTTCTAAAAGTGACCTAAAAATAAAAATACTTTCAACCGACAAGGATCTTATGCAACTTGTCAATGAGAATGTACATGTCATAAACCCAATAAAGAACAGGATCATAGGGGTTAACGAAGTTAAGGAAAAATTTGGTGTATTTCCAACACAAATGACAGATTTTCTCTCCCTTGTTGGTGACACATCTGATAATATTCCAGGAGTGCCTGGAATTGGTGTAAAAACAGCTGCAAAACTTCTTAACACGTTCGGTGCAATAGAAAACTTCAGACTTAACGAAATTTCCCCAGCAAGAATTAAAGAAAGTCTTCTTAGACATCACGATCAGCTTACACTATCAAAGAGACTGGTCTCGCTTGTAGATGATATAAACATTCAGTGTTCCCTCGATTGCATACGCTATCAGCAACAAGACGGTACAAAACTATTAGCCTTTCTAGAAAAATATGGCTTTAAAAACCTTATTCCAAAGCTAGTCAAAAGTACTCCTAAACAGTTACTACATATTACAAAATCAACAAATAAAATTAATGATTTTAGTCTTAGTGCCAAATATGAAGGCCAGATAACCATTTATAAAAATGGTGAGAAAACCATTTTTAGTACGCGAGAAGCCTCAATCATAGGTGACCTAAACATGCTCCAAGATCTATTTACAGATCGATCAATAAAGAAAATTTTTCATAGCGACAACATACCACATCCCGACCCTACAAATGACTCTTTTGAGGATCTAAAGGTAATCGCTTATCCTCTGAATACCTTGAACACGGATCTTGAGTACTTGTTCTCACACTACCTTGGAGAAACTTCCCGAGAAGCGTTCCATAAAAGACTAAATGAGCTCTATGAAAAACTATGCAACGCAATGTTCACAGAAAAGGTATTGACCCTCTACTATAAGGTGGACAAACCTCTGATTAATGCCATAAAACACATGGAAAAAAATGGCATATCCCTGGACGTAGAACAACTCCTCTCACTATCTACGCAAATATCAGGTAAATTAGAGGAGATAGAAAGCAAGATTTTTGATATTGCCGGAAAGACTTTTTCTCTGCAATCACCGAAGCAACTCGGGAAGGTGTTATTCGAAGAAATGCAAATACCTGTGCAGAAAAAGCTAAAAAGTGGTTTGTCCAGTACAGACAACGAAGTGTTAACCAGCCTGAGCATTCAGGGATATGAGATAGCAGATTACCTTCTCTCGTGGAGACATTATATTAAACTGAAAACTGCGTACATAGATCCACTTCTTCTGAAGGTAAATCCCAACGAAGAAAAACATCGTATTTCCACTACTTATTCTGCAACACTTACACTCACTGGCAGGCTGAGCTCGTCCAATCCAAATCTTCAAAACATACCAAGAGAAAAAGAAATACGAAAAATTTTTACAGCAAAAGAAGGACATCATTTTTTATGTGCAGATTACTCTCAAATTGAACTAAGGATTCTTGCATACATAGCAAACGTAGAGCGTTTGAAATGCGCTCTTGCCAGTGGCACAGATCTGCACACACTTACAGCAAGTCAGATTTTTAAAACGGATAAAATTACACCAGATTTGCGCAACAAAGCCAAGGCAGTTAATTTCGGCATAGTCTATGGAATAACAAACTTCGGATTATCAAAACAGCTCGCGATCTCAAAAGAGGAGGCAGCCTCATACATACAAAAATATTTCGATGAGTACCCAGAAATCAAAATCTATATGAATCACATAAGGAACCAAGCAAGAAAAGATACTTATGTTAAAACGATGATGAACCGTAAATGCCCTATTCAAAATATAAATAGCAATAATCGTACGATTTCACTCGTAGCAGAGAGGTCTGCTATAAATGCTCCTATACAGGGTACTGCCGCGGATATAATACGCACAGCAATGGTTAGGATGGCACAAGAAAAAGAACTACTCTCACATATGGTAATGCAAGTACACGACGAACTTGTATTCGAGCTTGAAACAGACGTAATCCAACAACTAGCAAAAAAAATAAAGCGAATAATGGAAGAATCTCACGGAATCCCACTCTTAGTAGAGCTGAAACACGGACCAAACCTCGGAGAACTGGAGGACTTAAAACTCGAAAGAAGCCAAGCCCCACAACAGGGAGGGCAAGGAGGATGA

Protein sequences of DBSCAN-SWA_1

>NC_007798|582930:593191|588598_590389_-|WP_011452057.1|DBSCAN-SWA
MNNKTLNIAVIAHVDHGKTTLTNNLLRQANVLDEVGMDRNPLEQKRGITMFSKVASVSYGNVKINLIDTPGHSDFGGEVERILSMVDSVMLLVDSAEGVMPQTKFVLSKALKVGLRPIVIINKVDRPDRRIEEVINEISDLFLALEANDEQLDFPVLYASGRDGWCVRDLNDQRESLVPLLETIIGYTPVRKYDREAPFSMLVTMLENDNFLGRILIGKIEQGSISVNAHVKAINLSGELLENSRITKLQIFDGMVKKVVENAEAGEIIAIAGLADTSVTDTVCDPSVNTPIDAIPIDPATISINISVNTSPFTGKEGNKLTSRMILARLLQEVKTNVSIKMEERGEGQFEVMGRGELQLGVLIENMRKEGFELSVSRPKVVIKIDENGQKMEPIEELTIDMDEEYAGIVMETLNTRKGIMQSMENYPGGRVRLVYHIPARSLIGYHGKFYSDTRGSGILNKVFYGYAPYSGKIDSRSNGVLVSNGQGEAVAYALFNLQDRGIMFVKPQDPVYCGMIVGEHSRGNDLDVNVLKGKQLTNIRAAGSDEAVRLSPPLLMTLEEMMAYINDDELVEVTPLSLRLRKKVLDSNMRKKQNV
>NC_007798|582930:593191|585761_586241_-|WP_011452053.1|DBSCAN-SWA
MRKLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEGKIRELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKISVSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEFRQS
>NC_007798|582930:593191|587933_588596_-|WP_157858679.1|DBSCAN-SWA
MKCTKGKKNVRTKYCGVFVEVLLIAILRGAAMALSMVRGQKKVTYILLVTSILLQVFISFSVLYVSYTRSSTCNNIKTAYEKACIILSSSEDSGIPSKKLNKFTQPTFVAEVAAQVASTVGVTVVTFFYKEGRLAVPGYATLMVFFFILGSFSSFPSVVDRRESLFYATKLNSVLDNVLASQSSVTETLSTMTDRGEIALRHATNKRTPGEWIIKQTYTR
>NC_007798|582930:593191|584985_585765_-|WP_049821606.1|DBSCAN-SWA
MKRLFDTRAIIARRKRFAGVDASHYYLLLEIYALLLEKISGSFSDVLNFGAHRGELLVSLKEFEDLSFANVVHLDVCHEMLASVSGKKIVVEDDSFELGENNFDLVISGMFMHHVNDLIGAFSAIYRSLKVGGMCLVSLFGPETLIELKQAIFNAEGGDGFVPRVSPFIHIKDAGRLIQRAGFVLPIVTSEKVVVEYSSVYKLFTDIHATAQSSAISGINYGMTTMGTLKRIITEYERLCLDGIKATFEVLVLVAMKGA
>NC_007798|582930:593191|582930_583671_-|WP_011452049.1|DBSCAN-SWA
MGFSLRDKRILVTGASGGIGEALIRYLHALGARLVISGTKEAKLHALNASIDCGAHVIVQDLSDLENVHLLIEGCKEKLGGLDGLVCNAGITDDKLSLRMGLDSWQKVINVNLTSSFILNKNAAVLMMRQKYGRIVNISSVVAVMGNSGQVNYCAAKAGIIGMSKSFAREFASKGVLVNCIAPGFIKTNMTDKLTEEQLAQVLPTIPMKRVGLPEELCGIVALLLSDMASYITGQTFHVNGGMLMV
>NC_007798|582930:593191|586531_587917_+|WP_041917514.1|DBSCAN-SWA
MSEKEFDVVVIGGGPAGYVCSIKAAQLGMKVACVEKRPSLGGTCLNEGCIPSKALLHSSYAYYSAKKCFDVLGVECSDVKLNLTKMMGNKSRIVMELSQGIEFLFKKNKVTRFTGTGSILANGDTKKKSVIIDKTETIHTKYVVLATGSEAAELPFAKCDEKSILSSRGALELDAVPKSMIIIGGGAIGLEMASIWSRLGTEVTLMEYADRIAAASDGEVSDYLLKSLTKQGIKFHLSSRITEIKKGKLLSATFEKDEKIGSISAEKILVAVGRRPYSANIGVELERNPSGFIKVDKNFQTSVPGVYAIGDTIPGVMLAHKAEEEGVAVAEILAGRTGHIGWIPSVIYTHPEVASVGKTEEELKVIGIKYKASKFPFAANSRAKTTNDTGGFVKMLVDEHDTVLGVHIVGPSASSLIAEAVLAMEYGASAEDIARTCHSHPDLNEAMKEAALGAFFKPIHF
>NC_007798|582930:593191|584100_584556_-|WP_011452051.1|DBSCAN-SWA
MEEYVIYTDGACLGNPGPGGWAAVIIQRGTNEKIISGREADSTNNKMELLAVIKALESFEQKGKRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWLWVKAHNGDHYNEIVDRVARKEAASFTNCEPE
>NC_007798|582930:593191|590701_593191_+|WP_011452059.1|DBSCAN-SWA
MSETLMIIDAYNFLFSAYFALPNLTHNELPVGAVYGFLNILLKHLRTKPEYLVVALDHGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVRKFSKSDLKIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLVGDTSDNIPGVPGIGVKTAAKLLNTFGAIENFRLNEISPARIKESLLRHHDQLTLSKRLVSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKSTPKQLLHITKSTNKINDFSLSAKYEGQITIYKNGEKTIFSTREASIIGDLNMLQDLFTDRSIKKIFHSDNIPHPDPTNDSFEDLKVIAYPLNTLNTDLEYLFSHYLGETSREAFHKRLNELYEKLCNAMFTEKVLTLYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGKLEEIESKIFDIAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSWRHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPREKEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKTDKITPDLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIKIYMNHIRNQARKDTYVKTMMNRKCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFELETDVIQQLAKKIKRIMEESHGIPLLVELKHGPNLGELEDLKLERSQAPQQGGQGG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011452049.1|582930_583671_-	3-oxoacyl-ACP reductase FabG	A0A0K0KVL6	Prochlorococcus_phage	1.7e-07	26.0
WP_011452051.1|584100_584556_-	ribonuclease HI	A9YW89	Ostreococcus_tauri_virus	8.6e-34	50.7
WP_049821606.1|584985_585765_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011452053.1|585761_586241_-	transcription elongation factor GreA	A0A248SJQ8	Salicola_phage	3.5e-09	26.8
WP_041917514.1|586531_587917_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-34	25.3
WP_157858679.1|587933_588596_-	hypothetical protein	NA	NA	NA	NA
WP_011452057.1|588598_590389_-	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	7.9e-22	40.0
WP_011452059.1|590701_593191_+	DNA polymerase I	S5M8J1	Bacillus_phage	5.2e-40	31.6