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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007775 Synechococcus sp. JA-3-3Ab, complete sequence 12 crisprs c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1 0 6 6 0

Results visualization

1. NC_007775
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_1 733173-733709 TypeI-E I-B,III-A,III-B
8 spacers
Cas14u_CAS-V,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_2 889207-892334 TypeIII NA
41 spacers
cas6,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,cas2,cas1,Cas14u_CAS-V,WYL,csx3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_3 1139963-1140602 Orphan NA
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_4 1173743-1173841 TypeIV-A?,TypeV-U4 NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_5 1260139-1260640 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_6 1438156-1438509 Unclear NA
8 spacers
Cas14u_CAS-V

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_7 1860020-1860135 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_8 1960214-1960325 Unclear NA
1 spacers
Cas14u_CAS-V,c2c9_V-U4

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_9 2327972-2329201 Orphan NA
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_10 2496843-2496919 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_11 2557478-2558125 TypeIII NA
8 spacers
cas2,csx18,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007775_12 2559270-2559458 TypeIII NA
2 spacers
cas2,csx18,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_007775_6 6.5|1438342|24|NC_007775|CRT 1438342-1438365 24 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 1405057-1405080 2 0.917
NC_007775_6 6.2|1438216|24|NC_007775|CRT 1438216-1438239 24 MN694698 Marine virus AFVG_250M1036, complete genome 18375-18398 3 0.875
NC_007775_6 6.3|1438258|24|NC_007775|CRT 1438258-1438281 24 NC_031042 Salmonella phage NR01, complete genome 2742-2765 5 0.792
NC_007775_6 6.3|1438258|24|NC_007775|CRT 1438258-1438281 24 MG387042 Salmonella phage SP3, partial genome 31985-32008 5 0.792
NC_007775_6 6.6|1438384|24|NC_007775|CRT 1438384-1438407 24 NC_031042 Salmonella phage NR01, complete genome 2742-2765 5 0.792
NC_007775_6 6.6|1438384|24|NC_007775|CRT 1438384-1438407 24 MG387042 Salmonella phage SP3, partial genome 31985-32008 5 0.792
NC_007775_1 1.3|733328|34|NC_007775|CRT,CRISPRCasFinder 733328-733361 34 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 744023-744056 10 0.706
NC_007775_1 1.3|733328|34|NC_007775|CRT,CRISPRCasFinder 733328-733361 34 NZ_CP029730 Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed2, complete sequence 43057-43090 10 0.706
NC_007775_12 12.1|2559310|34|NC_007775|PILER-CR 2559310-2559343 34 NZ_CP040821 Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence 177031-177064 10 0.706
NC_007775_12 12.1|2559310|34|NC_007775|PILER-CR 2559310-2559343 34 MN334766 Serratia phage PCH45, complete genome 93073-93106 10 0.706

1. spacer 6.5|1438342|24|NC_007775|CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 2, identity: 0.917

tgggcaagcctttgcagccattgg	CRISPR spacer
tcggcaagcctttgcagccatcgg	Protospacer
* *******************.**

2. spacer 6.2|1438216|24|NC_007775|CRT matches to MN694698 (Marine virus AFVG_250M1036, complete genome) position: , mismatch: 3, identity: 0.875

tgggcaagtttttgcagccattgg	CRISPR spacer
tgggcatgttgttgcagccattga	Protospacer
****** *** ************.

3. spacer 6.3|1438258|24|NC_007775|CRT matches to NC_031042 (Salmonella phage NR01, complete genome) position: , mismatch: 5, identity: 0.792

tgggcgtgtttccacagttactgt	CRISPR spacer
acaccgtgtttccacagttactgg	Protospacer
  . ******************* 

4. spacer 6.3|1438258|24|NC_007775|CRT matches to MG387042 (Salmonella phage SP3, partial genome) position: , mismatch: 5, identity: 0.792

tgggcgtgtttccacagttactgt	CRISPR spacer
acaccgtgtttccacagttactgg	Protospacer
  . ******************* 

5. spacer 6.6|1438384|24|NC_007775|CRT matches to NC_031042 (Salmonella phage NR01, complete genome) position: , mismatch: 5, identity: 0.792

tgggcgtgtttccacagttactgt	CRISPR spacer
acaccgtgtttccacagttactgg	Protospacer
  . ******************* 

6. spacer 6.6|1438384|24|NC_007775|CRT matches to MG387042 (Salmonella phage SP3, partial genome) position: , mismatch: 5, identity: 0.792

tgggcgtgtttccacagttactgt	CRISPR spacer
acaccgtgtttccacagttactgg	Protospacer
  . ******************* 

7. spacer 1.3|733328|34|NC_007775|CRT,CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 10, identity: 0.706

tgaagtcctgccgtcccgcgggccgggccgactt	CRISPR spacer
caacgtcgtgccgtcccgcaggccgggcgaggtg	Protospacer
..* *** ***********.******** .. * 

8. spacer 1.3|733328|34|NC_007775|CRT,CRISPRCasFinder matches to NZ_CP029730 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

tgaagtcctgccgtcccgcgggccgggccgactt	CRISPR spacer
cgggttcctgccgtcccgcgagccgcgccttcag	Protospacer
.*.. ***************.**** ***  *  

9. spacer 12.1|2559310|34|NC_007775|PILER-CR matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 10, identity: 0.706

atgggcggtgatttcgacggtgaccgcgtaagcg	CRISPR spacer
cagggcggcgatttcggcggtgaccgacagggcc	Protospacer
  ******.*******.*********   ..** 

10. spacer 12.1|2559310|34|NC_007775|PILER-CR matches to MN334766 (Serratia phage PCH45, complete genome) position: , mismatch: 10, identity: 0.706

atgggcggtgatttcgacggtgaccgcgtaagcg	CRISPR spacer
cagggcggtgacttcgatggtgaccgtgaatctt	Protospacer
  *********.*****.********.* *  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 555610 : 668722 110 Synechococcus_phage(13.04%) transposase,holin,protease,tRNA NA
DBSCAN-SWA_2 917240 : 926623 9 Acanthocystis_turfacea_Chlorella_virus(14.29%) protease NA
DBSCAN-SWA_3 1321049 : 1386729 53 Bacillus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_4 1885068 : 2019100 114 Catovirus(10.71%) transposase,protease,tRNA NA
DBSCAN-SWA_5 2402867 : 2450786 41 Clostridium_botulinum_C_phage(21.43%) transposase,tRNA NA
DBSCAN-SWA_6 2598423 : 2711283 104 Staphylococcus_phage(13.33%) transposase,protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage