CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007778	Rhodopseudomonas palustris HaA2, complete genome	4 crisprs	csa3,cas3	1	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007778_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007778_1

693310-693393

Orphan

Consensus_repeat	Method
GCTCCCTCTCCCGCTTGCGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007778_1

>merge|NC_007778|1|693310-693393|CRISPRCasFinder
GCTCCCTCTCCCGCTTGCGGGAGAGGGCCGGGGTGAGGTCGCCGCGAGTCGCAGCCCGCTCCCTCTCCCGCTTGCGGGAGAGGG

>NC_007778|1|1|693310-693393|CRISPRCasFinder
GCTCCCTCTCCCGCTTGCGGGAGAGGG	CCGGGGTGAGGTCGCCGCGAGTCGCAGCCC
GCTCCCTCTCCCGCTTGCGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007778.1\|WP_011439520.1\|698152_699034_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NC_007778.1\|WP_011439523.1\|701602_703060_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|172484
NC_007778.1\|WP_011439517.1\|694248_695250_+\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NC_007778.1\|WP_011439507.1\|681357_682377_+\|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl\|CDD\|378338
NC_007778.1\|WP_011439512.1\|689470_690316_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180596
NC_007778.1\|WP_011439521.1\|699168_699930_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NC_007778.1\|WP_011439522.1\|699926_701501_+\|2-polyprenylphenol-6-hydroxylase	unknown	unknown	gnl\|CDD\|273909
NC_007778.1\|WP_011439518.1\|695452_696250_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NC_007778.1\|WP_011439508.1\|682555_683290_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_007778.1\|WP_011439513.1\|690511_691738_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NC_007778.1\|WP_011439519.1\|696545_697928_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NC_007778.1\|WP_011439515.1\|692594_693083_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_007778.1\|WP_011439511.1\|686789_688988_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NC_007778.1\|WP_011439525.1\|703695_706209_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_007778.1\|WP_011439516.1\|693438_693963_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226329
NC_007778.1\|WP_011439510.1\|685601_686540_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176103
NC_007778.1\|WP_011439506.1\|678924_681081_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_007778.1\|WP_011439509.1\|683879_685568_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NC_007778.1\|WP_011439524.1\|703056_703515_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NC_007778.1\|WP_011439514.1\|691804_692335_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953

Protein	Function_ID	Function_description	E-value
NC_007778.1\|WP_011439520.1\|698152_699034_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	8.5826e-157
NC_007778.1\|WP_011439523.1\|701602_703060_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|172484	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional.	0
NC_007778.1\|WP_011439517.1\|694248_695250_+\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.27447e-147
NC_007778.1\|WP_011439507.1\|681357_682377_+\|lipid-A-deacylase-LpxR-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	6.61784e-70
NC_007778.1\|WP_011439512.1\|689470_690316_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180596	PRK06505, PRK06505, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_007778.1\|WP_011439521.1\|699168_699930_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	2.62382e-134
NC_007778.1\|WP_011439522.1\|699926_701501_+\|2-polyprenylphenol-6-hydroxylase	gnl\|CDD\|273909	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NC_007778.1\|WP_011439518.1\|695452_696250_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	4.71302e-121
NC_007778.1\|WP_011439508.1\|682555_683290_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.47288e-95
NC_007778.1\|WP_011439513.1\|690511_691738_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NC_007778.1\|WP_011439519.1\|696545_697928_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.6638e-07
NC_007778.1\|WP_011439515.1\|692594_693083_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.72596e-29
NC_007778.1\|WP_011439511.1\|686789_688988_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NC_007778.1\|WP_011439525.1\|703695_706209_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.71394e-42
NC_007778.1\|WP_011439516.1\|693438_693963_-\|hypothetical-protein	gnl\|CDD\|226329	COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown].	2.27345e-58
NC_007778.1\|WP_011439510.1\|685601_686540_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.85498e-80
NC_007778.1\|WP_011439506.1\|678924_681081_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_007778.1\|WP_011439509.1\|683879_685568_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	1.42788e-32
NC_007778.1\|WP_011439524.1\|703056_703515_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	1.73985e-88
NC_007778.1\|WP_011439514.1\|691804_692335_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.61565e-125

>NC_007778.1|WP_011439515.1|692594_693083_+|transcriptional-repressor
MDIGDRATYSREDHVTSAHAVEPHLNGCPWHDVNEMLQSVGLRPTRQRMALGWLLFSKGDRHLTAEMLYEEASQAKVPVSLATVYNTLNQLTDVGLLRQVSVDGTKTYFDTNVSAHQHFYLENNHELIDIPDQHVALRSTPEVPDGYEIARVDVVVRLRKKS
>NC_007778.1|WP_011439514.1|691804_692335_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MQDRRSSYDYEDLLACGRGELFGAGNAQLPLPPMLMFDRITEINDSGGEHGKGLIRAELDVNPDLWFFACHFKGDPVMPGCLGLDAMWQLVGFFLGWSGGLGPGRALGLGELKFSGQVQPNIKKVVYNIDVKRVMRSKLWLGIADGTMAADGEIFYRAKDLKVGLFRQDAAVQPAV
>NC_007778.1|WP_011439513.1|690511_691738_-|beta-ketoacyl-ACP-synthase-I
MRRVVVTGMGIVSSIGNNTQEVLASLHDAKSGITRAEKHAELGFRSQVQGLPSLNPADVVDRRAMRFLGEGAAWNHVAMEQALADSGLEEKDISNPRTGIVMGSGGPSARTIVEAADTTRTKGPKRVGPFAVPKAMSSTASATLATWFKIKGVNYSISSACATSNHCIGNAYELIQWGKQDVVFAGGCEELDWSLSVLFDAMGAMSSKYNDTPATASRPYDVSRDGFVIAGGAGVLVLEELEHAKARGAKIYGEIIGYGATSDGYDMVAPSGEGAERCMQMALATTGGIKIDYINPHATSTPAGDPPELQALRNVFGVGDKCPPISATKALTGHSLGATGVQEAIYSLLMMQNGFICESANITELDPAFADMPIVRKRIDNAQLGAVLSNSFGFGGTNATLVFKRLDA
>NC_007778.1|WP_011439512.1|689470_690316_-|enoyl-ACP-reductase-FabI
MQSLMQGKRGLIMGVANNHSLAWGIAKTLSAHGAELAFTYQGEALGKRVKPLAQSLNAELVLPCDVEDIASVDSVFATLNEKWGGLDFIVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAELMPESGGTMITLTYGGATRVMPNYNVMGVAKAALEASVRYLASDYGPRNIRINAISAGPVRTLAGAGIADARMMFNYQLRHAPLRRTVSIEDVGGSALYLLSGLSNGVTGEVHFVDSGYNIISMPHPEALKTVDEAETAAEQRAAKGE
>NC_007778.1|WP_011439511.1|686789_688988_+|catalase/peroxidase-HPI
MDAKTDDKDGGKCPFPHGGGRGRRNSDWWPEHLDISLLHRNSTLSDPMGKGFDYAREFESLDLDAVIKDLHALMTDSQDWWPADFGHYGGLMVRMAWHSAGTYRTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLYVLTGNVALESMGFKTFGFAGGRADTWEPEELFWGPEGSWLGDERYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDPSLIGAEPEGGALEDQGLGWKSSFGTGFGADAITGGPEVIWTQTPTQWSNHFFENLFGFEWELDKSPAGAKQWKAKGAEANIPDPFDPTKKRLPTMLTTDLSLRFDPAYEKISRRFLENPDQFADAFARAWFKLTHRDMGPKVRYRGKLVPKEDLIWQDPIPPVDHELVGDKDIAALKAKILGSGLSVSQLVSAAFASASTYRHSDKRGGANGARIRFAPQKDWEVNQPSDLAQVLSKLEAIQKEFNGAQTDGKKVSLADLIVLGGCAAVEKAAKDAGTDIQVPFTPGRMDALEEQTDADSFKVLEPRADGFRNFIGKRKQYMSPEESLVDRAQLLNLTAPEMTALLGGLRVLGGNVGHTTHGVFTERPEKLTNDFFVNLLDMKTAWSPSATTEVVYEGRDRKTGELRWTGTRVDLIFGSHSQLRALAEVYAQSDAQPKFARDFVAAWTKVMNADRFDIVAK
>NC_007778.1|WP_011439510.1|685601_686540_-|LysR-family-transcriptional-regulator
MVTLRQLRYLSALARFGHFGRAAEACAVTQPALSMQIADLERTLGVKVVERRPGEVFLTEIGREIARRGEDLLTASRDLVDFARHRAQPLTGRLTLGVIPSLAPYLLPKLLPLLQQRYPELRLELRESQTRQLVTEVGSGALDAALLALPAGNRELDAITLFDDEFLLAVPADDPRPETATVAVDEIDQSRLILLEDGHCLRDQALAFCATARNRAIAIGGTSTTTFGASSLTTVIQMVAGGYGVTLIPQIAAEIERRDTRVKFLRLRRPQPGRTIGLAFRKTSPRRQDFEALGEVVREGVGGRSSMAQPAA
>NC_007778.1|WP_011439509.1|683879_685568_+|methyl-accepting-chemotaxis-protein
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHSIFIDSQEAKSDAYRQFWAGLKSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVVKYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILDANPGFLGAMGYTLDEIKGKHHSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFKVVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKGKHHSMFVEPAERDSEAYRRFWAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKPFKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNASVREISEAMTKSRETALSAVGEVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASEVKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTVTGEMSSSMQRAAAEAAAMAAGG
>NC_007778.1|WP_011439508.1|682555_683290_+|superoxide-dismutase
MSLLSRRRLIVSATGFAAAAMAAPRAAFAQAAATPAGPFTLPPLPYPAAALEPHIDAKTMEIHHGKHHQAYVSNMNGFAKDHPKLAQMSVPDVLGKLGDVPEAIRTGVRNNLGGHANHTMFWQIMGPNGGKPSGEVAAAIDRDLGGMDKFQADFNAAGGKQFGSGWVFVTVGKDGKLAIEARPNQDTPLMDGKRVLLGNDVWEHAYYLNYQNRRADYLKAWWNTVNWSKVGERYAAAKAGTLGV
>NC_007778.1|WP_011439507.1|681357_682377_+|lipid-A-deacylase-LpxR-family-protein
MRRWTAKLATVVIATLLSHGALAQRAVLIGENDTVADTDRDYTSGFRLSFVFDNFSRDLLAGQAFDLVRPALITYGSPSGSVRQQFEWIALAQNIYTPDRDTRGTYTPGVDRPFGGWLYTGFSVAQETGRRQLDSFELQVGAVGGNASLAQAVQSSFHSVLGQASPVINGYELRNEPGILLAWDRRWKFGTAFGNGFGVDIIPSLGLTAGNVFTYGEAGAIVRFGRALSTTWGPTVIRPGVSGANFVSPDPDAPFWGFSLFGGAQARGVARNIFLDGNTFSSGLHVSRDAFVYDLVAGAEVFNQAGFLASLSWVRRSREYTTQTRAYSDYASLALAYRF
>NC_007778.1|WP_011439506.1|678924_681081_+|polyribonucleotide-nucleotidyltransferase
MFNKHSVEIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVAGTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELVVIDDSAIEKEMLGLVEQELRAAYAIPVKQERYAAVGKVKEKAIAHFFPEGEEPKYDKLRIAGVFKELEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVASSDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLASGRVQKTSDVVKEGDKVKVKLLGFDDRGKTRLSMRVVDQETGEDLEAKQKAEGEAPAQATGE
>NC_007778.1|WP_011439516.1|693438_693963_-|hypothetical-protein
MKLTKPIAGLLFAGAMVGVAAPSFAAKDSPLSTSGLPVPRYVSLKSDHVNVRIGPTKDNDVAWVYTRAGLPVEITAEFENWRRVRDSEGAEGWVYHSLLSGRRTAVITMKDKDELATLYESASTDSAVAARLQAGVVAQIKRCDAVWCRIAGQGFDGWIEKQRLWGVYADEQVK
>NC_007778.1|WP_011439517.1|694248_695250_+|D-glycerate-dehydrogenase
MSVKKKPLVVVTRKLPDSIETRMRELFDARLNLDDAPMSAEQLADAARTADVLVPTVTDSITSEMLNQPDCKLRLIANFGNGIDNIDVAAAHARGITVTNTPKVLTEDTADMTMALILAVPRRLIEGAALLTDGGEWPGWSPTWMLGRRLGGKRLGIIGMGRIGQAVARRARAFGLQIHYHNRKPVAPRIADELGATYWDSLDQMLARMDIISVNCPHTPATFHLLSARRLKLVRKDAFIVNTARGEVIDEETLTRLIESGDIAGAGLDVYEHEPAVNPKLVRLAKHGKVVLLPHMGSATIEGRVEMGEKVIINIRTFLDNHKPPDRVLPGML
>NC_007778.1|WP_011439518.1|695452_696250_-|molybdopterin-synthase-adenylyltransferase-MoeB
MLSAEELERYARHIVLREVGGPGQAALRRARVLVVGAGGLGAPVLMYLAAAGVGTLHIVDDDVVSLSNLQRQVIHATPDVGARKVDSAAARIHALNPHVQVVPHPTHLTSANALGLIGDCDLVLDGSDNFATRYLVSDACFIAKKPLITAALGQFDGSLTTIRAHEKNAQGEPNPTYRCLFPEAPPPGTVPACEEAGVMGALAGLLGSMMALEAIREIVGFGEGLVGRLLMIDARAMRFETLRYARDPANPLNGDMARIVDLSAH
>NC_007778.1|WP_011439519.1|696545_697928_+|peptidoglycan-binding-protein
MRTMLAATLMIASATGLAAAQTAPPSGAVPAVKPKPVATTPVRPALQTPAETAQAMTPAERQAIQSDLAWTGDYNGVINGEPSERMVTAIKAFQKNHGGKQTGVLNPQERAQLTEAARKLQGNVGWKLISDMVTGARLGIPAKLVPQQTSDANGSKWASSTGTIQIVLARRKEAGITIAKLADQEKKEPGRKVGYSAIKPDFFVLSGTQGLKKFYMRGAFKDSEVRILTILYDQATEGTMEPVVVAMSSAFNPFPSGALAGPPPRKKVEYSTGTIVSDDGAILADRDAVEACQSIVIAGQIAAHGNADLAATDKAHDLALLRIYGARGLKPLALGSGAAKASVDVVGIADPQNQGGGSAVSVSKAGVTPVGSNGGLALAPAPGLGFSGAPARDADGRFAGLALLRPSVVAGATNGAVAPQAALVDAETVRKFLVSNAIKPATDAPADAKASVVRVICVRK
>NC_007778.1|WP_011439520.1|698152_699034_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETVRLGLQPAMEGFRIDRAMANRCDLRFPFQPDFAARLTGQTITGLGRRAKYLLADLSSGDVLLMHLGMSGSFRVVNGAGDATPGEFHHPRSEDRTHDHVVFEMSSGARVIFNDPRRFGFMKIFARAAIDDEPHLKGLGPEPLGNAFDAAMLARACAGKQTSLKAALLDQRVVAGLGNIYVCEALWRAHLSPKRKASTLADRKGAPTDRAVRLVDAIRAVLGDAIKAGGSSLRDHRQTSGELGYFQHSFAVYDREGERCRTPGCNGTVKRLVQNGRSTFWCSGCQT
>NC_007778.1|WP_011439521.1|699168_699930_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MTEPGQTTHFGYRDVPLQDKQTLVNDVFHSVASRYDLMNDLMSGGMHRLWKDVMITTLNPPRDDQPFRLLDVAGGTGDISFRAAKASGAGFQATVCDINTDMLEVGRQRAVERHLDGQVEFVEGNAEALQFPDKSYDAYTIAFGIRNVPRIDLALKEAHRVLKPGSRFLCLEFSSVDVPGLAKIYDLFSFKVIPQIGRVVTGDAESYQYLVESIRKFPKPADFGEMMREAGFARVNWQVLSGGIVALHSGWRL
>NC_007778.1|WP_011439522.1|699926_701501_+|2-polyprenylphenol-6-hydroxylase
MIAALTHVARLARAAFVFAREGVFGVVDPSLIPPAGQLPVRLARLIERPGAKSGARLSRALTRLGPAYLKLGQFLATRPDVVGVAMARDLEALQDRLPPFAQDEAEAVIAASLERPIAQAFVSLSPPVAAASIAQVHRGVVEVGGVHKQVAVKVLRPNVSARFRRDLSDFFFVAEKAEMYSSEARRLRLVEVINTMSRSVAMEMDLRLEAAAASEMAENTKDDPDFRVPTVDWDRTTHNVLTMEWIDGIPLNDHKRLAEANVDTVELGRKVIQSFLRHALRDGFFHADMHPGNLFLDTEGRLVAVDFGIMGRLLPKERRFLAEILLGFITRNYRRVAEVHFEAGYVPPHHSVENFAQAIRAIGEPIHNRLAEEISMAKLLTLLLEVTGLFDMRTRPELILLQKTMVVVEGVARSFDPKLDIWKVADPVVREWIQRNLGPIGKVEGVLSGAGELGHTLSGLPTIVSRAVTVLNQLEGMTKDGLVLAPETIAAIGRNERGRTRGRTIALWVIAATFIGVLIALSRF
>NC_007778.1|WP_011439523.1|701602_703060_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MANLTIRKLDDALKAELRQRAAGNGRSMEDEVRVILRDAVHQRHGFATSLPQAGGAAAEPGPGDVSPENQTAFVSDRPSTARITLIVGGGIAAYKAMDLIRRLKERGAEVRVVLTKAAQHFVTPLTASALSHQRCYTDLFDPQSEFDAGHIRLARDCDLIVVAPATADLMAKIANGHADDLATAILLATNRQVLLAPAMNPLMWANAATRRNVDQLKRDGIVLVGPNAGEMAERNEAGTGRMAEPVEIAAAAQALLAPPSPRPLLGRRVLITAGPTHEPIDPVRYIANRSSGKQGYAIAAAAAAAGAEVVLISGPVDLRAPDGVTLTRVESARDMLDAVEAALPADIAIFAAAVADWRVASEGGQKIKKGEGGPPPLQLTENPDILATVAKLGDDRPPLVIGFAAETENLLANARSKLARKGCDWIVANDVSAAGGVMGGDRNTVHLLTKSADTVDVESWPLMTKDDVATALVARIARELEVHQS
>NC_007778.1|WP_011439524.1|703056_703515_+|dUTP-diphosphatase
MSPAIAVEIKRLPHAEGLPLPAYQSAHAAGLDLCAANSADAPLSLAPGCHMLVPTGLCIALPPNYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLLINHGKEPFTIRRGERIAQMIIAPVVRAELISVETLSETARGVGGFGSTGR
>NC_007778.1|WP_011439525.1|703695_706209_+|PAS-domain-containing-sensor-histidine-kinase
MSDVLGSMRRTCLSCTSLVRGLAGAGLVTASSPAFAADDPLAALTSWIIVDLNRHELVTLAMAVSVLGFSVMSAILLMRTRQRAAAQEARLRAEVQTLQAESDRFRALLFAEPQVLISWSAGDDRPQISGDIALLLPNDAHGGQPQRVLAFGTWLPPEPALQIDHAVDALLDKGEAFLLHLTTSTGRAIEAMGRAVGGQAILRIRELSGVRRELADMSRRFKMLQDETDMLRGFADAAPWPIWTRRASGELNFANAAYARAADASSPADAVGRNLELLDSTDRGNLARALAEDSEFAARLPIVVAGERRYFDVRALRLKGGSAGMAVDSSEAAALGAALVRMAEAHRRTLDQLSSGVAVFDAQRRLAFYNDSYRKLWDLDRTFLDSHPDDSSVLDRLRAARKLPEERDFREWKNRLHEAYRAVEADKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLDLQRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPAFTRMWNLSPEALNDRPHIETVEAWCRPLYDDDASWQALRGAITGIDDRKQVALKLERKDGTVLSCKTMPLPDGATMLTFQDISDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYITSSTNALLAIINNILDLASIDAGAMTLNLGPIEIRRTIAAAAEGIQDRLARDQITLDIDTDPAIGEFVGDERRVVQVLYNLLANAIGFSPNEATVKLVVRKKGTNVVFTVTDAGPGIAPALKDKVFDLFESDSQGSRHRGPGLGLALVRSFVELHGGKVEVDSVVGHGTSVICEFPIEPGAQRNAAE

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Crispr_ID: NC_007778_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007778_2

914486-914585

Orphan

Consensus_repeat	Method
GCGATCACCCTCGACAACCACGAGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007778_2

>merge|NC_007778|2|914486-914585|CRISPRCasFinder
GCGATCACCCTCGACAACCACGAGGGCGGGTCGATCGGCGCGGTCGCGCTGTCCCTCAGCGCAACCGGATCGGCGATCACCCTCGCCAACCACGAGGGCG

>NC_007778|2|2|914486-914585|CRISPRCasFinder
GCGATCACCCTCGACAACCACGAGGGCG	GGTCGATCGGCGCGGTCGCGCTGTCCCTCAGCGCAACCGGATCG
GCGATCACCCTCGCCAACCACGAGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007778.1\|WP_011439712.1\|929063_929417_-\|PRC-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|368352
NC_007778.1\|WP_011439715.1\|931823_933038_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_007778.1\|WP_011439705.1\|919004_922715_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176544
NC_007778.1\|WP_011439696.1\|893896_895351_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240553
NC_007778.1\|WP_011439699.1\|896294_897137_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_007778.1\|WP_011439709.1\|924564_925077_-\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_011439694.1\|889903_891883_-\|TIGR03768-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|163480
NC_007778.1\|WP_011439702.1\|899530_901312_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_007778.1\|WP_011439695.1\|892287_893631_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NC_007778.1\|WP_011439706.1\|922848_923283_+\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_041797934.1\|895875_896232_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_007778.1\|WP_011439708.1\|923807_924272_-\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_011439713.1\|930039_930762_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NC_007778.1\|WP_041797936.1\|901810_909799_+\|ExeM/NucH-family-extracellular-endonuclease	unknown	unknown	gnl\|CDD\|225249
NC_007778.1\|WP_011439714.1\|930833_931715_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NC_007778.1\|WP_011439711.1\|927480_928788_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NC_007778.1\|WP_011439701.1\|898197_899520_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_007778.1\|WP_011439700.1\|897296_897875_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_007778.1\|WP_041798552.1\|925466_927083_+\|DUF3459-domain-containing-protein	unknown	unknown	gnl\|CDD\|200470
NC_007778.1\|WP_011439697.1\|895358_895763_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863

Protein	Function_ID	Function_description	E-value
NC_007778.1\|WP_011439712.1\|929063_929417_-\|PRC-barrel-domain-containing-protein	gnl\|CDD\|368352	pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.	2.16404e-07
NC_007778.1\|WP_011439715.1\|931823_933038_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.51226e-60
NC_007778.1\|WP_011439705.1\|919004_922715_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176544	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.	1.98908e-36
NC_007778.1\|WP_011439696.1\|893896_895351_+\|MATE-family-efflux-transporter	gnl\|CDD\|240553	cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	7.20346e-164
NC_007778.1\|WP_011439699.1\|896294_897137_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.70982e-31
NC_007778.1\|WP_011439694.1\|889903_891883_-\|TIGR03768-family-metallophosphoesterase	gnl\|CDD\|163480	TIGR03768, RPA4764, metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region represented by this model. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.	0
NC_007778.1\|WP_011439702.1\|899530_901312_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_007778.1\|WP_011439695.1\|892287_893631_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	1.8881e-108
NC_007778.1\|WP_041797934.1\|895875_896232_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.80406e-43
NC_007778.1\|WP_011439713.1\|930039_930762_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	3.14758e-44
NC_007778.1\|WP_041797936.1\|901810_909799_+\|ExeM/NucH-family-extracellular-endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	5.27375e-155
NC_007778.1\|WP_011439714.1\|930833_931715_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	3.05923e-121
NC_007778.1\|WP_011439711.1\|927480_928788_-\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	1.93931e-10
NC_007778.1\|WP_011439701.1\|898197_899520_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.67993e-104
NC_007778.1\|WP_011439700.1\|897296_897875_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.48674e-32
NC_007778.1\|WP_041798552.1\|925466_927083_+\|DUF3459-domain-containing-protein	gnl\|CDD\|200470	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_007778.1\|WP_011439697.1\|895358_895763_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	7.71125e-29

>NC_007778.1|WP_041797936.1|901810_909799_+|ExeM/NucH-family-extracellular-endonuclease
MSTTYHVLANGDLLQDWSNANLISADDNWSGVPSIQGYLGDINSSSPTAVDPRTLTGADLGAVDVIANAASTTITNGGVAEFALANPTVALNGSGTADAPSLVIYLNATGREDVRVSFNVRDLDASTDNAIQQVAVQYRFGSSGTWTNVTGGYAADVTTVNSATQVTPFDLLLPAEVNGRADLQVRILTTNAVGNDEWIGVDDIRVTSESETPVDGQVVGFAAGSTSVSHDEGNSGSTTYQFTVERSGGTIGDVSFSGSIASPQTDAADFVGGKPVSFAGTIGAGETSATVTVTVAGDTSNEANESFTLTLDNVSNSAAVTTTVGSASQATGVIVNDDVGITKISTIQGEGASSAMVGQTVTVEAIVVGDFQNGDGDNSRNLNGFYLQEEITDSDGNVRTSEAIFVYGGSTDVQVGDRVRVTGSISEYFGLTELTASSISIVQAGAVSDINSMATVIDLPSVGTTLSQDGDYQPDLEAYEGMLVTIPETLTITEQYNLDRFNEIKLVAGDRPEQFTQENAPDAAAYQAYLAELGARTITYDDGLNTQNEAITNLDGFGPTYNTDTAPRMGDTITGLTGVLDYQWAGNSASGATWRIRSVETGTNTFEDSATPRTEAPEDVGGSLKVAGFNVLNYFKTLDIGSATTVIGEDPRGADTAAELARQTTKLVETILKMDVDVLALTELENDFLPGSSGNAIEYLVAQLNAEAGAGTYAWVNPGQQFVGGDAIAVGFIYRTADVKIADGTTVEILNDSDLPGLGLSGLLSQSTVGHIFDGENTSRNALAVTFEQISTGETFTAIANHLKSKSGTGTGADADQGDGQGNWQNQRELATVALTAWAQSDPTGSGDSDVLLLGDFNGYAKEQSIGLLEDAGYENLQTRQDDAYSYVFDGQTGTLDYAFANDSMGSQVTGVTTWHINADEADALDYNTDYGRDTAIFDGTEPVRVSDHDPVIIGLDLGDDLSNVAYTLQILHASDFEAGLNAVDRAGNFASIVDYLEETYENSITLSSGDNFIPSPFFSAGSDASLKEVYETALETYYGLATGTLNISPGFGTADISMLNIIGVQASAIGNHEFDAGTNPFAAIIRQTASFPGAQFPYLSANLDFSGDSNLSGLYTSTIQDAANYTGFPPVAGIGKKIAPATIIEEGGEKIGVVGATTQIVQSISSTGGVEVIGDNVDDMAALAAILQPTIDALIAQGINKIILVSHLQQLAFEQALAPLLHGVDIIIAGGSHTLLADETDALRAGDTAAGTYPIVTANADGNTTLIVNTSGEYSYVGRLVVDFDAEGNVIYTENAAVNGAYASTEEVVQSLYDGNTTVDVDNDGDIDADDADPFADGSRGDLVNDIAQAVGGVIDAQDGNIFGQTDVYLEGRRGEVRTEETNLGDLTADANLWYAQKVDGTVLVSIKNGGGIRDSIGYVYAVGGDAVENPPLANSDVGKEAGDVSQLDIANALRFNNSLSLVTVTAAQLLEVLEHAVKATTATATPGQFAQIGGISFSFDKDLPAGNRVQSAALIDEDGNPVMTLVADGELAVDADMAIRVVTLSFLLTGGDSYPFAAFVAANPSFANVVNLTPDLVPDAGQVAAFAAEGTEQDAFAEYMAANYSETAYDELDTDKAHDTRIQNLDYREDTVLDAQSLILVGDDDDNALTGALGDDVLTGLGGDDTLVGNGGDDQLDGGEGDDTLLGGDGDDQLAGGEGDDSLDGGAGDDILLGGEGDDTLLGGDGDDVLVGGEGYDTMEGGAGNDEFTAGAGDSVDGGEGDDLIVVSTDDYAPALIDGGDGNDTLKLIGTGTGVIAVSNVVVDVENLVVDGGSWSVDGSAAYSNITIGNDATLTSSLIIDNNDLVGIAAGGTLAVSGNAIIWQGGGDAVLDNAGEIEGSTRALTTTAGATGSLTVNNQAGGVIRGAVTPQQAGQADATITVNNAGVMEADGRVLDFRSFDGSGASAVINNLAGGIIRQYGTNTDVIRPGNDGVVNNWGTITTDPSFVAGGDLIDFQSDTGGKVNNYAGGLMEGARHVVTGDNAVTVVNHGTMIGRNGSAVNLDTDGSLEQKAVITNYGVMEGRSAELTDSDGDAIDVDGLVEVLNYGKISGLGAEGYHDGEPNVSEAIAIGGGEIRNYATGEIYGYGRAIQVDNSSNSNALGVTTITNDGLIQGDGHGPEGVSAEDAARFDLRGNEAINLVGTYADSLFNSATGRIVGGVAMGGGNDTLSNDGSITATGGSAVNMGEGDDLLVNRAVITGDVLLGAGTDELINQSSGVITGDVTFGDGNDKLGNTGKIVGDVDLGAGDDFVNIWIGSDIQGQILLGDGNDLLISNDWISTNMEIDGGAGNDEIYTSFGNDTVVGGEGNDRIYANNGNDTIDGGAGDDQLFGQAGNDVIDGGDGADTINGGDGNDVLNGGLGNDLIIAGAGDDTIDGGAGFDTLDLSEATGAVTLNLVSGTVSGAGIGTDHFSSIESFVFGAGNDVITGGNGDDSLDGGAGNDTITGGNGNDTLSGGEGNDAIDGGSGNDIVDGGLGNDTLKGGSGNDVIAAGDGDDNVDAGSGDDNVTGGAGNDTLKGGSGADIITGGAGNDILTGGSGADVFVFAAGFGKDTVTDFATTGSSADLLQFSSDMFADFADVMAHTAQVGSSVVVTLDADTSITLANVQMTSLAADDFRFV
>NC_007778.1|WP_011439702.1|899530_901312_-|type-I-secretion-system-permease/ATPase
MDSMSVPTSSEQAPRDLPTAAIASCRNAFLATGLFSAVINLLMLAGPVYMLQVYDRVIPSRSIPTLVALSIAVAACYALQGLFDFLRQRILTRIGAALHAALWEPVVSHILRSPLRGGGANRGLQLSHDLDQVRSFLSGLGPTTLFDLPWMPLYLAACFLLHPYLGWTLVVGAVLLFGIALATEFLTRAPTRDASRSGAARSVQLEAGRRNAEVVAALGMEQRLIARIGSANDDHLDAQQRNADIAGALGSLSKSLRFMLQSALLGLGAYLVIEGEASSGVMIAASILGSRALAPVELAISIWRPFLGARQSWQRLRSALTSAPAQASAVAPERAVQQLSVDQVYVAAPGTTTAIVQNATFKIESGQAVGIIGPSAAGKSTLARALVGLWPAARGEIRLDGATLDQWPAEVRGGMIGYLPQDVELFDGTVAENIARFDPDIDEAAVIAAAKAAGAYELILKLPKGFEMRIGEAGATLSGGQRQRIALARALYGDPFMVVLDEPNASLDAEGDAALTDAIRRVRARGGIAIIIAHRPSALAAVDLVLTLANGQVQAFGPKDEVLRKSLAGQYNAPGTVALQAVPESRPPTAAVS
>NC_007778.1|WP_011439701.1|898197_899520_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MTQPAVTEDRRSAPFRDVRNAVIIGVAALAIVISTAGVWAVTAPIASAVIAPAQVVVDSNVRRIQHPTGGVVAGISVNDGDYVHAGDELLRLDETLPRANLALIENQLNQFWTRRARLQAEQNGRDAMPVPVELTGRTDEPAIAQIIEGETALLLRRREAITGQQSQLGERKSQIGEEIRGLAAQIDSKREQIRLIQRELEGVRQLFDKNLIPYARLTALEREAARLTGEEGQLIADTARAKGRITETELQIIQLTQDQRREVATDLREVEIKIADLAERRIAAQDQLTRVVLRAPQDGLIHQKAVHTVGGVISPGEQLMLIVPKDSLVIEARVEPQMIDRLKPGQPAKLRFTAFDTAVTPELDGTLTRIAADLTKDQQSGAAYYVVRINLAERELARLEGKVLVPGMPVEAYIQNGVRTALAYLRKPLEDQLARAFRQR
>NC_007778.1|WP_011439700.1|897296_897875_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MVEVAYTIFDTMMGRCGIAWGLDGVLVVQLAESREIDTRRRLLKQCPDAREARPTVGIDSAIEGVAAILRGAHWDFSDVRLDLGGLPAFDCRVYDILRDIPRGETATYAEIAKRAGSPGALHAVGHAIRSNPFAVIVPCHRALPVAGDTSGSSANGGAITRRRLLAIEGALATRGPSLFDVLLTATPRQADR
>NC_007778.1|WP_011439699.1|896294_897137_-|helix-turn-helix-transcriptional-regulator
MTASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTRGRTYELVAGAVMIGRPGDDYVCSHEHHACGDECLSFALTPELAATLGDDDTLWRSGAVPPRAELMVLGEQAQAAAEGRNDLGLDEIGQVLAQRFATIGGGRAYQPPPLRARDRRRVVETALWIEAQCTEAIDLEAAAARAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVGFADLSNFIRSFRRAAGLSPRAFRKASRQDRNFVQERLGAV
>NC_007778.1|WP_041797934.1|895875_896232_-|VOC-family-protein
MYDHIGLKVGDLDVAVRFYTAALRPLGYELCSRDGDGAGFGPDGAPALWLSRSDAAKSSAHVALRAPDHDAIRRFHAAGLEAGGRDNGGAGPRPDYGPNYFAAFLIDPDGNNIEAVIS
>NC_007778.1|WP_011439697.1|895358_895763_-|SRPBCC-family-protein
MASIHQSLTITASVAEVWDAIRDFGRVHLRVAPGFVADCRLDGDGRIVTFASGTIVRETLVDCDDSRHRLVYAISPNERVAHYQGQFVVTENDDRRCRIDWTVDLLPDAIAPMIAAQMQLGVAAMRTTLERSDG
>NC_007778.1|WP_011439696.1|893896_895351_+|MATE-family-efflux-transporter
MSDIAVAELPPVQGDPPPRRDAEPPLPPPNPLLDGAILPTLLRLSWPNVVALTAGTCVVVAETSYIGRLGTEALAAMALVFPFVILTMTMSGGAMGGGVASAVSRALGSGDSDRAATLAMHALLIGLCFGLVFTVGMLTFGDTALALLGGRGNVLAQAVSYAHIFFAGAVVPWLMNTFAAILRGTGNMKLPSLMILTAAGLQIVLGGVLGLGFGPVPRFGMPGVAAGTLTAFSVGAGVMAWYIFSGRAGVTPKFKGLRIQRAMFFDILKVGAVACFTPLQSVLTITIFTHMLARFGTEILAGYGIGARLEFMLTSIAFAVGIASVPMIGMAIGAGRVARARRIAWTAALVSFLCVGVVGSAVAFFPHLWVDLFTSDPGVKLAGERYLRAAGPMYAFIGLSISLYFSAQGAARVLGPVLAQTGRLIFVVLGGWLLIAHNGSVGHFFALAAASMGVLGLATALAVLLTRWSPKQVAVTDAGSPPPG
>NC_007778.1|WP_011439695.1|892287_893631_-|sorbosone-dehydrogenase-family-protein
MRRSFTTSRLAFCAAMALPLAACGDQANFTQGEDYGPTPKLAEPANNLLPTVNIAKAVGWPQGAKPKPAEGMAVTAFATGLDHPRTLHVAPNGDVLVAETNAPERPEQGKGLKRMAAEFVMGQAGAKTPSANRITLLRDADGDGVAEVRSTFLDGLNSPFGMALVGNDLYVANTDAIMRFPYNPGDTRITAKGEKLADLPAGPRNHHWTKDLIASRDGAKLYATSGSNSNAAEHGMDEEVNRAAILEVDRATGATRLFASGLRNPNGPAWEPETGALWVVVNERDEIGSDLVPDYMTSVQDGGFYGWPYSYYGQNVDTRVEPPRPDLVAKAIVPDYALGNHTASLGLAFNTGDLFPAEMKGGAFVGQHGSWNRKPHSGYKVIYVPFQGGKPSGPPRDVLTRFLNDKDEAQGRPVGVAIDGRGALLVADDVGKSVWRVTPAGREQAAR
>NC_007778.1|WP_011439694.1|889903_891883_-|TIGR03768-family-metallophosphoesterase
MTHHLPSPAPSSGLLSTRRAFLQSSAAFIGALSLGSSLGAPAWGRDLRRYPIATPAETTVTQMLAFPATIEPGLAKTALHQVARYKDFGYGEWTLGSGLPIVTRTDLMRAGYEKPVGGESKRLIRFFAFTDVHITDKEAPNQLIGFQQTEPAAVNNTSIYSPVMPYTTQVLDAAVQTVNDLHSRDPFDFGIALGDACNSTSYNEVRWYIDVLDGQPITPSSGDHRGRDSVDFQMPFQAAGLAADLPWYQVLGNHDHFMIGSFPVDADPTIGLRQSYTADRIWAVGDVLKPNREGFPALFDYRGLKATPAYYPGVIDGASPYGAIIHTGRADDPAFAGKPPQIAADPGRRPLARAEWLAEFRNTTTRPKGHGFDLIDGAGDGFACYSFVPKSNLPLKVIVLDVTQSEQDGSRDIHGHGFLDARRWDWLKAELARGQADDQLMIIANHIPIGVSPIGSEMEWWLGDANAAPDFANAVDLAGLVTTLQAAPNLLMWIAGHRHLNVVKAFPSADPDRPEQGFWQVETCSLRDFPQQFRTFEIRLNADDTVSIEAMNVDIAVADGTPAAQSRKYAIATQQIIQNDLRPNSPNYATAGGKIPVPSMDPTRPQSDDPKATDPSIRFVDLRSADKPVQYHASSNVALLKQLSPRMVEVLERRVAMRK
>NC_007778.1|WP_011439705.1|919004_922715_+|glycerophosphoryl-diester-phosphodiesterase
MSDIVLLAHRGSNPYPDHSRDAYVWAIDCGADFIEPDLYLTKDGVLVSSHDNHNYSNLSYAEAKALEPSLLTFGEIIELVKAMSIETGRDIGIVPETKSTDYATSEAVIKELIAHDFTDPDRVVIQSFASTNLQQLHDTIMPQYGVDIPLAYLGSGIANPGQIATFADYAAPSVGSFTAADVAAAHAAGLKVVAWTILGARSDIQSLIDMGVDAVFVDDTRLARASIEAIAGANVVYGTPEIDGASGTAGNDVVYAMQGDDIVWSGAGDDLVYGDGGDDALFGGAGNDILVGGSGTDLLSGDAGRDVLDGGAGNDVVLASGDTVLFRRGSGIDLVALDAASSIDFQDIDSRAITVIRDGADLIVRIGDDALVIRNGAGNAASLPGAVSFADGVTLTATELLARATSGTDAGVTAALPALEQLLAAAPDLAVEPPVVVETNLIVNGGFEDLTGANNGASWGYRNTNPAGVIPGWVNRGDTRAEVHKDTVGGIGAAEGTYWFDLEGAPTNAKLVQTVAGVEQGATYQLSFRIADTDTAQTTDSVKVYWGGELIYTGTPKNKWQEITIDVIGGDGDGFNTLTFESVTPSPNGAGVALDDVALIRLQESPNLIVNGSFEDLTGANNGNWSGDWGYRNNSGVIPGWTQVETSAGGRAELHFDTQNGVSAADGNVWFDMDGNGNNARLVQTVAGVEAGATYRLTFSIADADASTTDDGVRVYWGGQVVYEGVPTSIWQKITIEVVGNAGDGTNQLIFQGTETSLNGYGAALDDISLRKIADAPPPNTAPVAADDGAPATDFGAALTIAAATLLANDTDADGDALVILSVAAGVGGTVALDADRNVVFTPAEGFSGEASFSYVASDGRGGTATADVTVVVARRVLSGTPGDDVIISTSGDDVIDGGDGVDTVSYAASAAGVDVDLAAGVASGDGNDTLSSIESVIGSAHDDRLSGNDAANLLDGGDGDDILSGGLGNDVLNGGLGNDIITGGAGDDTIDGGAGFDTLDLSEATGAVTLNLVSGTVSGAGIGTDHFSSIESFVFGSGNDVITGGNGDDSLDGGAGNDAIDGGNGNDTLSGGEGNDAIDGGSGNDIVDGGLGNDTLKGGSGNDVIAAGDGDDNVDAGSGDDIVTGGAGNDTLKGGSGADIITGGAGNDILTGGSGADVFVFAAGFGNDTVTDFATTGSSADLLQFSSDMFADFADVMAHTAQVGSSVVVTLDADTSITLANVQMTSLAADDFRFV
>NC_007778.1|WP_011439706.1|922848_923283_+|hypothetical-protein
MQIGPAQALIEIKFSLPVATHDRHQAIRSFELFRTRTVGIYRLSGVNQCKESVAVAASGNAHAARRAAMSRVHTGGRLMAGRTNERETDRMDQIDRTGVADTRSDRATRVWARNRLRELAESGQLGLSSGTAPRRVSASVSATR
>NC_007778.1|WP_011439708.1|923807_924272_-|hypothetical-protein
MLELGILAVIILAAVYWMALWLMGRREDVLYGSFVSPPQGGTPEQAPEPGGGAALSAPWSSELPPPELPRRPRAAPTTGLLAGHPTPLQPKTLQPTSLQPTSLKPTALQPTTTASATPATADLPPAAVLASLLETIKRDLNDAAGNEPHNQPIK
>NC_007778.1|WP_011439709.1|924564_925077_-|hypothetical-protein
MTQIVKVYDDAKKAQAAVAELKAASFDNAALVTNKDGNVVSVDPPFGKGGQAEAILNRHGPARSAAPSYASSSANLSGAPRLTDSRTTLGGIFPELTSPNFFLSSMFGPLLSSSQAPMSSLAASQKPWSSLTSSQKPFSQLAANQNGSAKLINDPTPFSSMLGLPVLLGR
>NC_007778.1|WP_041798552.1|925466_927083_+|DUF3459-domain-containing-protein
MTKETSPSWWAAGALYQIYPRSFQDSDSDGIGDLRGIIDRLDHLSDLGVDALWLSPIFPSPMADFGYDVADYVGIDPIFGTMDDFDALVLTAHARGLKVILDLVPNHSSDQHPWFVESRSSRDNPKRDWYLWRDPAPDGGPPTNWLSEFGGSGWEYDDATGQYYYHAFLKQQPDLNWRNPQVRAAIYDAMRFWLKKGVDGFRVDVIWHLIKDDRYRDNPPNPEFRPGLPPHAALLTAYSADRPETQEIVAQLRAVCDEFDQRLLIGEIYLPIERLVAYYGADLRGAHLPFNFALLSTPWRAHDIAALIDRYEAALPPGAWPNWVLGNHDRPRVASRVGPAQARVAAMLLLTLRGTPTLYYGDELGMEQVDIAPQDVQDPFEKNVPGIGVGRDGCRTPMPWDSSPNAGFSDAKPWLPLGPDAAQDNVANLRADAQSILNLYRALLRLRRARPQLSLGDYQPLAVQGELLLYRRCHQGESVLIALNLGAAPVSAASDAFGLDGEVLLSTLMDRAGERVGATLDLRGHEGVIIGRAPEPVV
>NC_007778.1|WP_011439711.1|927480_928788_-|pilus-assembly-protein
MQKLLDTRHIGRLPRRFGRDRSGNIAVIFAIALLPILGFIGAAIDYATANRIRTKLQSAQDAAVLLAVSNSEINRTTAQAKADAEQFFNATIGAYGLTATIKIEVTENDGKRSATADFTSTVTTNFLNLIGYPTLAIGNRSTSTVSRPIYQDFYLLLDNSPSMGVAATTADIATMVGNTSDKCAFACHDLSDSNNYYNLAKKLGVKMRIDVVRQAVQQLTSTATLMTAVNNQFRMAVYTLGGSCASLGLTTIASLSSAMSSVQTAAGAIDLMSIPKQNYNNDQCTDFNSALAAMNTTIPSSGTGTAAQPQKWLFFVSDGVADFNNPSGCTQPTVSGGRCQEPLTVTQCKAMKDRGIQIAVLYTTYLALPTNQWYNDHIAPFNAGPYGPSVNSQIAAKMKSCASPDFYFEVSPTQGISEAMDALFKKAVAKARLSS
>NC_007778.1|WP_011439712.1|929063_929417_-|PRC-barrel-domain-containing-protein
MTPETSETVSLIGSDKVQGTAVYGADGEKIGSIERVMIEKVSGKVSYAVLSFGGFLGIGDDHYPLPWPSLKYNVDLGGYQTMITNDQLQNAPHYGRDDEYDWKRARKVDDYYGVTLS
>NC_007778.1|WP_011439713.1|930039_930762_-|DNA-3-methyladenine-glycosylase-2-family-protein
MDARVKPAHDGASELKSTMTIHLDTQADLEAAITNLVKQDKRLRPVLKTAGMPALRRRDPGFRGLAAIVCGQQLSVASAAAIWARVDAAFDPFDHAAIQRARSDRLGRLGLSAAKIKTLKALAKELHAERLNLDVLANEDADIAHTTLTALHGIGPWTADIYLLFCLGHGDAWPAGDLAVQEAMRIGLGLEARPSVKQMAPLAEPWRPLRGAAAHLWWAYYHAVKKRDGVIAGKAKTATA
>NC_007778.1|WP_011439714.1|930833_931715_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MPPPVFRFAPSPNGFLHLGHAYSALLNFDLARASGGRLLLRIEDIDATRCRPEYEAAIVDDLAWLGIAWEPEVRRQSDHLDLYRDAVERLAARGLVYPAFESRAEIARLVAAKETTAPWPRDPDGAPLYPGSAKLLSAEQRAQLIGSGAPYALRLDMEAARALAGELFWRELSLGPDGEAGMVAARPEAWGDVVIARKETPTSYHLAVVIDDALQGVTEVVRGADLFWSTSVHRLLQTLLDLPAPVYRHHPLLRDAEGRKLSKSTGATGLRELRAAGGTPSEIRAMVGLAASA
>NC_007778.1|WP_011439715.1|931823_933038_+|response-regulator
MAVKSRALRRGRTPVKRSPIKRARKKAETAGMVETALAAFAHEVRTPLTGILAVSDLLATSDLGERERRWVDTIKAGAEHLSGLATLFVDAARLGATGLEGRSEFFDLRALARHAGDSLSGRAAAKGLRAKVTISPRLPAFVVGDMVRLRAALENLIDNAVKFTEQGDVALKVTSAAAGKDKADVSFAVSDSGIGLTLTEIRRLFRPFSQANVSIASRFGGAGLGLSSVRQIARAMQGDVAVAQGAKGGAVFTLTVRLTRTKPPQQAAPSHAAKGACVRPMRLLSVEDNPFGRVVLNAILTELGHHAEFVGSGELAPERLAQGGFDAVLMDMVLPGISGPEAIRSIRALAAPLGAVPIIGVSGRDQDEAAARMAGADAFLLKPVSPRALATALLAASRRPAAAT

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Crispr_ID: NC_007778_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007778_3

1211969-1212047

Orphan

Consensus_repeat	Method
TGGGGTGAGGGCGCGCCGAGCAC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_007778_3

>merge|NC_007778|3|1211969-1212047|CRISPRCasFinder
TGGGGTGAGGGCGCGCCGAGCACAGCGCGCTCCCTCTCCCGCTTGCGGGAGAGGGTTGGGGTGAGGGCGCGCCGAGCAG

>NC_007778|3|3|1211969-1212047|CRISPRCasFinder
TGGGGTGAGGGCGCGCCGAGCAC	AGCGCGCTCCCTCTCCCGCTTGCGGGAGAGGGT
TGGGGTGAGGGCGCGCCGAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007778.1\|WP_011439956.1\|1212174_1213812_-\|acyl--CoA-ligase	unknown	unknown	gnl\|CDD\|341286
NC_007778.1\|WP_011439954.1\|1210191_1210821_-\|DUF2478-domain-containing-protein	unknown	unknown	gnl\|CDD\|371179
NC_007778.1\|WP_011439946.1\|1203969_1204890_+\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NC_007778.1\|WP_011439957.1\|1214062_1214269_+\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_011439960.1\|1215466_1216324_+\|protocatechuate-3,4-dioxygenase-subunit-beta	unknown	unknown	gnl\|CDD\|184003
NC_007778.1\|WP_011439948.1\|1205939_1206797_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_007778.1\|WP_011439965.1\|1221671_1225136_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NC_007778.1\|WP_041797977.1\|1216493_1217681_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_007778.1\|WP_011439953.1\|1209787_1210180_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239331
NC_007778.1\|WP_011439955.1\|1211056_1211905_+\|ModD-protein	unknown	unknown	gnl\|CDD\|238807
NC_007778.1\|WP_011439958.1\|1214361_1214949_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645
NC_007778.1\|WP_041798571.1\|1209153_1209768_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_007778.1\|WP_011439947.1\|1204879_1205926_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NC_007778.1\|WP_011439951.1\|1207808_1208939_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_007778.1\|WP_011439959.1\|1215068_1215452_+\|protocatechuate-4,5-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|139527
NC_007778.1\|WP_011439949.1\|1206970_1207396_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_007778.1\|WP_011439950.1\|1207414_1207783_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238785
NC_007778.1\|WP_011439963.1\|1220020_1220401_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226765
NC_007778.1\|WP_011439964.1\|1220465_1221449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286344
NC_007778.1\|WP_011439962.1\|1217802_1219749_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926

Protein	Function_ID	Function_description	E-value
NC_007778.1\|WP_011439956.1\|1212174_1213812_-\|acyl--CoA-ligase	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	1.42528e-148
NC_007778.1\|WP_011439954.1\|1210191_1210821_-\|DUF2478-domain-containing-protein	gnl\|CDD\|371179	pfam10649, DUF2478, Protein of unknown function (DUF2478). This is a family of hypothetical bacterial proteins found in the vicinity of Molybdenum ABC transporter ATP-binding gene-products MobA MobB and MobC. However the function could not be confirmed. This family appears to belong to the P-loop superfamily by alignment to pfam03266. However, the characteristic P-loop sequence motif appears to have diverged beyond recognition in this family.	4.66912e-63
NC_007778.1\|WP_011439946.1\|1203969_1204890_+\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	4.15852e-148
NC_007778.1\|WP_011439960.1\|1215466_1216324_+\|protocatechuate-3,4-dioxygenase-subunit-beta	gnl\|CDD\|184003	PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional.	0
NC_007778.1\|WP_011439948.1\|1205939_1206797_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.29951e-29
NC_007778.1\|WP_011439965.1\|1221671_1225136_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_007778.1\|WP_041797977.1\|1216493_1217681_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.33158e-76
NC_007778.1\|WP_011439953.1\|1209787_1210180_-\|hypothetical-protein	gnl\|CDD\|239331	cd03033, ArsC_15kD, Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.	2.6635e-68
NC_007778.1\|WP_011439955.1\|1211056_1211905_+\|ModD-protein	gnl\|CDD\|238807	cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.	1.8783e-118
NC_007778.1\|WP_011439958.1\|1214361_1214949_+\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	5.26709e-34
NC_007778.1\|WP_041798571.1\|1209153_1209768_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00912e-14
NC_007778.1\|WP_011439947.1\|1204879_1205926_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.86798e-154
NC_007778.1\|WP_011439951.1\|1207808_1208939_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.4977e-32
NC_007778.1\|WP_011439959.1\|1215068_1215452_+\|protocatechuate-4,5-dioxygenase-subunit-alpha	gnl\|CDD\|139527	PRK13378, PRK13378, protocatechuate 4,5-dioxygenase subunit alpha; Provisional.	1.81831e-66
NC_007778.1\|WP_011439949.1\|1206970_1207396_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	3.95741e-17
NC_007778.1\|WP_011439950.1\|1207414_1207783_-\|sulfurtransferase	gnl\|CDD\|238785	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.	1.46057e-20
NC_007778.1\|WP_011439963.1\|1220020_1220401_-\|hypothetical-protein	gnl\|CDD\|226765	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown].	7.63665e-40
NC_007778.1\|WP_011439964.1\|1220465_1221449_-\|hypothetical-protein	gnl\|CDD\|286344	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.	2.24735e-84
NC_007778.1\|WP_011439962.1\|1217802_1219749_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0

>NC_007778.1|WP_011439955.1|1211056_1211905_+|ModD-protein
MPAAATTELERLLDDDVPHGDLTTELLGIGGEAGVMAFTARDPMVLALAEDAAAILRLCGCEVELLAATGTKLAPGAPILIARGAASGLLRGWKVAQTLIEIWSGVATATREIVEAARAVSPGIAIACTRKNTPGTKRFAVAAVKAGGAGMHRLGLSETILVFAEHRGFLDEPAAATVARLRAAAPEKKLVTEVSTIDAALAAAAAGYDVLQLEKFAPADVATLVARLAETPLRPVIAAAGGVNASNAAAYAAAGAQVLVTSAPYMAKPRDVQVRIRRATTK
>NC_007778.1|WP_011439954.1|1210191_1210821_-|DUF2478-domain-containing-protein
MTETPPDSDPARIAAIVYRAEDDVDGLLAAFAFERLRAGDRLGGLVQRNIKDATGRRVDMQLIDLMTGQAIGISQMLGGSAGSCKLDAAGLAESAQAVSRAVAAEVALVVINKFSKQEATGHGLRSEFAEAMVAGLPLLTAVPEKCADAWRDFIGDGGAELPCTRAAVEAWWREAAPADSHHALCAQAPTARTAEQPADDRDWLWRTIC
>NC_007778.1|WP_011439953.1|1209787_1210180_-|hypothetical-protein
MARLVFYEKPGCVGNARQKALLVASGHELDVRNLLSESWTPETLRPFFGSKPLAEWFNASSPKVKAGAIDFAALTDESALALMIADPLLIRRPLLQAGDRRESGFDQPTIDAWIGLKPTDIPVTDRCAMA
>NC_007778.1|WP_041798571.1|1209153_1209768_+|class-I-SAM-dependent-methyltransferase
MASDEFNRWEGRFAVEDYVFGTAPNAFLSSCRDILPKQGRALSIADGEGRNGVFLAECGLSVLSVDFSPAAQGKAQRLAAARGVTIETQTADLLTWDWPGDFDVIAGIFFQFVEADERPRIFQAIRDALKPGGLLLIEGYRPKQLIYKTGGPSRADNLYTHELLEAAFGDFDNLSIREHDSEIAEGSGHVGMSALIDLIGWKPK
>NC_007778.1|WP_011439951.1|1207808_1208939_-|pyridine-nucleotide-disulfide-oxidoreductase
MTNITIIGSGFAALTAARALRKRKVDASITMISPRRELHFLPSTIWIPAGIRSGARLKVPLGHFFEKYRIDFVEASVTGLKDGGRIVETDRGDFSNDHLIVACGARFIRKLPGIEHALIPCEGIAVGEEIGRRLDAMKGGTIAVGFSTNPEEPGAMRGGPMFEFLFIIDTLLRQRGKRPGFQIVFFSPSPRPGARLGERAVDGLLREMKDRGIATQLGRKILRIEERKVVLDGGGEIEADLILFMPGLTGPAWLANTELPLSPGGMIKADEMCRVDGLPNVWVAGDAGSFPGPDWMPKQAHQADLQALAVAANIAAVESGDAPSTRFKPELVCIVDTLDSGMLVFRNEKFNFVGPKMKLFHWLKRLFERHYLTTFR
>NC_007778.1|WP_011439950.1|1207414_1207783_-|sulfurtransferase
MGVKTISPIEAQRLLDAGAVLVDVRERHEIERERIDGAIELPLTGFRHGDLRDAHGRKAIFFCHSGGRTRMYAGQIAAKANGVCEPYVLGGGILAWRKAGFDTVKGPQPPGLFKRLFGSKAD
>NC_007778.1|WP_011439949.1|1206970_1207396_+|helix-turn-helix-transcriptional-regulator
MPVPKRARRPSTDGLTHVDTGELRDNALVASEFLKTLSNPSRLVMLCLLAEGERSVSELATTLDERQPTVSQQLARLRGERLVETRRDGQQVFYSLASDEVRSLILVLHAIFCAKPRGKAAKVTVLRPVKTVAAKKTAARR
>NC_007778.1|WP_011439948.1|1205939_1206797_-|alpha/beta-hydrolase
MQNPESRFYRSHGLRLHYADWGNDTAPPLLLIHGGADHARSWDHLARSLRADFHVVAPDLRGHGDSDWTLGGSYSLPEYVYDLTRLPAFEGRGPITIVGHSMGGMVSLIYAGTFPEQVARLVVLDGVTVRPDAAKPPVHERTRKWIGQLEALENREPRRYRDIAEAAAQMQAHNKRLAPELALHLATYGVKQNDDGSYSWKFDPHQRVMAPHRLWPDDHVALWGRITCPTLLLFAGESFLSDAAEAGIADHFPQARAETVAGAGHWLQHDRPDEVLRLIRDFLLV
>NC_007778.1|WP_011439947.1|1204879_1205926_+|sulfate-ABC-transporter-ATP-binding-protein
MTIEVRNIVKQFGSFRALDNVDLRVETGELMALLGPSGSGKTTLLRIIAGLEWPDAGSIAFDGEDALARGAAERHVGFVFQHYALFRHMSVFENVAFGLRVQPRKIRKSEAEIRKRVGDLLDLVQLGWLADRYPNQLSGGQRQRIALARALAIEPRILLLDEPFGALDAKVRKELRAWLRNLHEEIHVTSIFVTHDQEEALEVANRVVVMDKGRIEQIGSPGDVYERPASAFVHGFIGESIVLPVEVRDGRVRLGDRVLDLAPTDTASGPSKLFVRRHDVAVGPSGSGVFEGAVKSVRAFGPMQRADIVLQGVGGDTLVEIDAPRDHSLKVGDRIGLQPQRYRIFADR
>NC_007778.1|WP_011439946.1|1203969_1204890_+|sulfate-ABC-transporter-permease-subunit-CysW
MTLVATTSVRRSPRKPAVAAGARAGQPARRPAHGEPAWVRLLIIGFAVSFLTVFVVLPLILVFSEALSKGVSFYLDALAGDEALAAIRLTLVAAAISVGLNLVFGVIAAWAIAKFEFRGKTLLITLIDLPFSVSPVISGLVFVLLFGAQGFVGPWLMAHDVRILFALPAIVLATTFVTFPFVARELIPLMQEQGQHEEEAAISLGASGWKTFWRVTLPNIKWGLLYGVLLCNARAMGEFGAVSVVSGHIRGETNTMPLLVEILYNEYQMVAAFAIASLLALLALVTLIVKTILEGRIEEGLHTDDH
>NC_007778.1|WP_011439956.1|1212174_1213812_-|acyl--CoA-ligase
MKFWGDSGIGGALRRETHYGDRTMLCFAERPPTLAAMFDDLVTKFGDRPAIVDEDVTLSYRDLDGRVRSIAASLIGLGVAPGDRVALFLGNCWEFVACALACNRIGARLVPIGTRQRKAELDFLLTNSGAKVLVFEADLADQIPAQADVPTLTHRFAAHGDAAGARPFADLLAASPADAPVVAMHEDDTAVILYTSGTTGKPKGAELTHLSILHSAYAFARAHELTEHDRGLVAVPLSHVTGLVGVTYATLAAGGCVVLMRQSYKTPDFLALASREKITWSILVPAIYTLVAMAPEFDRHDLSAWRIGCFGGAPMPVPTIEMLSKRLPNLQLRNAYGATETTSPTTIMPQAHWRDHMDSVGQPIPYAQVRVVDADGNEVAPGQPGELLIAGPMVVPRYWQREDANAAEFIGGYWRSGDIGSIDAEGFVRVFDRKKDMINRGGFKIFSAEVENVICGLDGVLETAIVGTPDPVLGERVNAIVVTSEGAQLSEGDVAAYCAARMSDYKVPESIILRTEPLPRNANGKIQKTMLRETIAERAARHSAA
>NC_007778.1|WP_011439957.1|1214062_1214269_+|hypothetical-protein
MILTELKCECGAEYRCAESETLKGEPGTLNCSSCGQIVVHWASPHKRVYRCVIAPDRGYPVVVPPPSP
>NC_007778.1|WP_011439958.1|1214361_1214949_+|NUDIX-hydrolase
MRAPVLAAGGIVLRRGGEPLFAVVRMRKRNDWVLPKGKLDDGETPRQAAMREVLEETGHLVEVHEFIGTLACEAGGRTKVVHFWRMEAAPVQTHPLMKDIRAVDWLPLHQAVERLTRIHERAFLAHVGPLVLDTAARTAPPLAAAQHRAPFDDQPLDDQPLAELTVSPSLALEQPHDAQPTMLQRIRNWWRGTAR
>NC_007778.1|WP_011439959.1|1215068_1215452_+|protocatechuate-4,5-dioxygenase-subunit-alpha
MSQALAKQPEAGAYLKRDIFGTPIFGPEAAQKGYALNKMCFSFNSAAARADFVADEAAYCARYGLTATQTEAILKRDLLKLLDHGGNAYYLAKFAGILGLNMQDIGALQTGMSVEQFKAKLLAARDS
>NC_007778.1|WP_011439960.1|1215466_1216324_+|protocatechuate-3,4-dioxygenase-subunit-beta
MATIIGGLAASHVPAIGGAIAKGLQKDPYWAPFFDGFDATHRWLDAVKPDAAVVIYNDHGLNFFLDKMPTFAVGAAPEYRNDDEGWGIPVRAPFRGDTALSWHIIETLVGAEFDPVTCQEMLVDHAYSLPMELFFRERAHDIPTVPVVVNTVQHPLPSLRRCFKLGQAIGRAIESYPEDLKVVVIGTGGLSHQLEGERAGFINTAFDRRCMDAMTGDIDSLLTIDPHELVELAGSQGVEVMNWVAMRGALTGDVHELHRNYHLPISNTASGIMLLENRPKLAQAA
>NC_007778.1|WP_041797977.1|1216493_1217681_+|cytochrome-P450
MFSFDPYSPAVDADPFPLYKTLRDEHPVYWSEPAQMWVLSRYIDVASAGTNWQVFSSAKGNLMTELPGRAGATLGTTDPPRHDRLRGLVQHAFMKRNLEALAEPMRDIAREAAEALRGREQFDFIADFSSKFTVRVLFAALGLPLGDEQTVRDKAVLMVQSDPVSRAKGPEHLAAYAWMQDYAAKVIAQRRAEPQNDLISHFSMAEIDGDKLDEREVLLTTTTLIMAGIESLGGFMSMLALNLADYADARRAVVADPARLPDAVEESLRYNTSAQRFKRCLQTDLTLHGVTMKAGDFVCLAYGSANRDERQFPNPDVYDLARKPKGHLGFGGGVHGCLGSAIARMAIKIAFDEFHKVVPDYTRVQPRLDWMPSSTFRSPLRLEMAVERAESRNAA
>NC_007778.1|WP_011439962.1|1217802_1219749_-|MBL-fold-metallo-hydrolase
MSDAGHKPDSARVAKDATAPVIARHATVLNELPFSDTRDFDEARRGFLGTIDDAMITSPQGRTVWSLAPYAFLAAETAPPSVDPSLWRQSRLNMNHGLFEVVPGVYQVRGFDIANMTLIEGDRGVIVVDTLTSIEGARAALQLYYRHRGERPVSAVIFTHTHADHWGGARGVLDDAALSRGAVPIIAPDQFMEHAVSENIIAGPAMLRRAQYQFGPLLAKGPRGQVDCGLGKSMAAGSVALLRPTDLIRATGDTRTIDGVTLEFQMAPNSEAPAEMHFYVPRCKLLNLAENCTHNFHNLLPFRGADVRDALAWSKYLSEALQLWGGKAEAMCGQHHWPVWGAERIDTMIRQQRDLYKFAHDQTLRLINHGLTAAEIAETIRLPKSLDGAWHTRGYYGHIRHNVKAIYQKYLGWYDANPANLDPLPPVEAGRKYVEYMGGADALLAKARADFARGEFRFVAQALSHLVFAEPDNQDGRHLLADTFEQLGYQSESATWRNAYLFGAQELRAGMPKVPARPPMPRETLAALKTSQLWDVLGVRLNGPKAEGKTIVLNWTFTDTAERWVLTLENCALTYLEGAAADNADAGFELPRGVLDEVIAKQTSFPEAVVAGRIKVRGNPMKLAELMALMDEFPRMFEIVEPKRTIMS
>NC_007778.1|WP_011439963.1|1220020_1220401_-|hypothetical-protein
MSRTLTLFTAAVFALAASAASAMTLKTADTAAGKTFVDAKGMTLYTFDKDAGGKSMCNGPCATNWPPLAAAADAKPTADMTIVTRDDGSKMWAYKGKPLYTFAKDMKPGDTTGDGFLNGAWHIAKP
>NC_007778.1|WP_011439964.1|1220465_1221449_-|hypothetical-protein
MIPPSLPAELKAALEQALHRLPRDAAATRAAAISQTYRDGGNSSPIKTTTDALAYAGARMPATYAAVAASLNALREIRPDFAPRTLLDVGAGPGTASWAAAQAFDTLQSFTLLDANTALRALALTLAQGSPLAGADYQLGDARKLLGGAPDAALVIASYVINELDDKARDDFADAAWRKTSDTLLIVEPGTPAGYARILAVRARLIAQGARVIAPCPHEHACPLTAPDWCHFVQRLPRSRLHQHLKGAELPYEDEKFIYLALSRTAPPSRPSRVLTQPVQTKVAITAKLCTPQGLDHAVAPRRDKPSYARFRRLSWGDTISTDTARE
>NC_007778.1|WP_011439965.1|1221671_1225136_-|chromosome-segregation-protein-SMC
MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATDMDAVIFAGSGNRPSRNHAEVVMSIDNTDRTAPAALNDSEVLEISRRIEREAGSQYRINGREVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLEDAAGVAGLHARRHEAELRLKAAETNLTRVEDVIGQLSSQVDGLKKQARQAIRFREVAAKVRKTEATLYHLRWRDANTEVTTAAQVHDLGVRELAERTREQAEAARIQADRASTLPGLREAEARAAAGLQRLINARELLDREEARAKERVVELERRLAQFSSDVEREQQQAIDADAALERLQAEDIELREEILERVEKRGGVDERVGLAEEALGEAERLFAELTTQLAQLTARRNQFEQAVRSHRDRLGRLDTEIRNVDSEIERLTAETSGAGNVDELAEAVAMAQETLAELEASVQQAEAAQVAARHKLDGSRSPLVDAEKRVQRLETEAKTISKILNGETKNLWPPIIDGITVAKGYEKAIGAVLGDDLDAPVDPTAPMRWTDIGVQADDPALPDGVEALSQHVNAPPELARRLAQIGVVTKERGGELVGQLKTGQRLVSLDGDVWRWDGFVASAHAPTGAARRLAERARLVDIENELEQARIDASAKRDALEMAEAELRNAAQAESASRESLRGARREVDAARERHAAAEREINRHAARRSALTEAQSRLAADRLEAEMACETAENALAELAPNDDSEQRLSAVRGDIENHRRNAAQVRAEAQALAREAELADKRLQAIVGERNQWIQRKQSAASQIATVEERVAELIAERAELDNAPTVFAEKRSAIITEIEYAEADRRTAADALATAEQAMADTDRAAKATLEQLSRAREACARAEERMEAARRRLEDIEREIRDMLEVEPQAAASLAEIVEGTELPPLAEIEADLEKLRRDRERLGAVNLRAEEELNEVETQHGSLAAERDDLVEAIKKLRTGIQSLNKEARERLLASFEVVNGHFKRLFTTLFGGGEAELKLIESDDPLEAGLEIIAKPPGKKPQSLSLLSGGEQALTAMALIFAVFLTNPSPICVLDEVDAPLDDHNVERFCDLLNEMTATTETRFIIITHNPITMARMNRLFGVTMAERGVSQLVSVDLQGAVDILDQNVA

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Crispr_ID: NC_007778_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007778_4

3183257-3183364

Orphan

Consensus_repeat	Method
CTGGCCGGTCGCAGTCGCGTTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007778_4

>merge|NC_007778|4|3183257-3183364|CRISPRCasFinder
CTGGCCGGTCGCAGTCGCGTTCGAACCGGTCGCTCTGCTGCTTTCGCCGGTGGCGGTGGCGAATTGGCCGATGGCGTTGCTCGCCTGGCCGGTCGCGGTCGCGTTCGA

>NC_007778|4|4|3183257-3183364|CRISPRCasFinder
CTGGCCGGTCGCAGTCGCGTTCGA	ACCGGTCGCTCTGCTGCTTTCGCCGGTGGCGGTGGCGAATTGGCCGATGGCGTTGCTCGC
CTGGCCGGTCGCGGTCGCGTTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007778.1\|WP_011441671.1\|3174267_3175131_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_007778.1\|WP_011441676.1\|3178705_3179023_+\|membrane-protein	unknown	unknown	gnl\|CDD\|269827
NC_007778.1\|WP_011441685.1\|3189640_3190438_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_007778.1\|WP_011441678.1\|3180827_3181220_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_007778.1\|WP_011441675.1\|3177644_3178577_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_007778.1\|WP_041798255.1\|3185513_3186287_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_007778.1\|WP_011441686.1\|3190448_3190970_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_007778.1\|WP_011441683.1\|3186539_3188441_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372652
NC_007778.1\|WP_011441673.1\|3176027_3176354_-\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NC_007778.1\|WP_011441669.1\|3171343_3172855_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|237110
NC_007778.1\|WP_011441681.1\|3184223_3185360_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_007778.1\|WP_157038825.1\|3193614_3193755_-\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_011441670.1\|3173038_3174268_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NC_007778.1\|WP_011441689.1\|3194450_3194954_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_007778.1\|WP_011441687.1\|3191008_3193579_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_007778.1\|WP_011441679.1\|3181529_3182171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_007778.1\|WP_011441677.1\|3179029_3180661_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_007778.1\|WP_041798729.1\|3188478_3189495_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_007778.1\|WP_011441688.1\|3193705_3194194_-\|hypothetical-protein	unknown	unknown	unknown
NC_007778.1\|WP_011441672.1\|3175127_3175997_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203

Protein	Function_ID	Function_description	E-value
NC_007778.1\|WP_011441671.1\|3174267_3175131_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NC_007778.1\|WP_011441676.1\|3178705_3179023_+\|membrane-protein	gnl\|CDD\|269827	cd14742, PAAR_RHS, proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions. This PAAR (proline-alanine-alanine-arginine) repeat subfamily, which forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS), contains C- and N-terminal domain extensions. These include Rearrangement hotspot (Rhs) protein repeats and conserved Rhs repeat-associated unique core sequences at the C-terminal, and various predicted functions at N- and C-terminal extensions. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. Rhs and related YD-peptide repeat proteins are widely distributed in bacteria. Rhs shares similar architecture with distantly related WapA proteins of Bacillus and Listeria species, suggesting intercellular growth inhibition as its primary function. Additionally, a plasmid-encoded Rhs protein has been implicated in bacteriocin production in Pseudomonas savastanoi. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	2.61026e-17
NC_007778.1\|WP_011441685.1\|3189640_3190438_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.70691e-150
NC_007778.1\|WP_011441678.1\|3180827_3181220_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	8.01768e-22
NC_007778.1\|WP_011441675.1\|3177644_3178577_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.20177e-11
NC_007778.1\|WP_041798255.1\|3185513_3186287_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.84017e-126
NC_007778.1\|WP_011441686.1\|3190448_3190970_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.48312e-93
NC_007778.1\|WP_011441683.1\|3186539_3188441_+\|peptidylprolyl-isomerase	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	3.3985e-44
NC_007778.1\|WP_011441673.1\|3176027_3176354_-\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	8.51793e-32
NC_007778.1\|WP_011441669.1\|3171343_3172855_-\|L,D-transpeptidase	gnl\|CDD\|237110	PRK12472, PRK12472, hypothetical protein; Provisional.	0
NC_007778.1\|WP_011441681.1\|3184223_3185360_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	2.08923e-07
NC_007778.1\|WP_011441670.1\|3173038_3174268_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.15936e-57
NC_007778.1\|WP_011441689.1\|3194450_3194954_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	2.0211e-35
NC_007778.1\|WP_011441687.1\|3191008_3193579_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_007778.1\|WP_011441679.1\|3181529_3182171_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00869488
NC_007778.1\|WP_011441677.1\|3179029_3180661_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_007778.1\|WP_041798729.1\|3188478_3189495_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NC_007778.1\|WP_011441672.1\|3175127_3175997_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.37724e-28

>NC_007778.1|WP_011441679.1|3181529_3182171_-|hypothetical-protein
MRNLRSHDGPVRLEPLLAAALVLASAMSVAPAGAQPAKQAQTENAAPKPAQIDRNGVLILIRSTLLALDQANKTGNYTVLRDLGAAGFQINTAARLAEIFAKQRNENLDLSGVAVIEPQLNLLPQVEANGLMRMAGFFPSVPSQVNFELTFAPVNGQWRLFGLSVSIGQAAPVAPQPPAAANQPPSAEAKMPSATVPQPRSAKPNPPPAPNKP
>NC_007778.1|WP_011441678.1|3180827_3181220_-|preprotein-translocase-subunit-SecG
MQTVIIVIHLMLVLGLIATVLLQKSEGGGLGVGGGGGGGFMSSRGTANLLTRTTAFLAVGFFITSLLLSWLATYNRKPTTILPTAAPTTQQAPGVPAPPVSQGGGLLDSLKQADQPQNQAPAAPAPPQSQ
>NC_007778.1|WP_011441677.1|3179029_3180661_-|CTP-synthase
MARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGRPATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTNAIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIKNDLPRGDVIYIHLTLLPYIPSAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDADSIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTGMKDAYKSLIEALSHGGIANKVQVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAEGKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQANSTEFGPTAEPLVGLMTEWLRGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDRLEQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRSRLV
>NC_007778.1|WP_011441676.1|3178705_3179023_+|membrane-protein
MRRMLLQIGLLLVVSGSASAQTPGVVTGGSDNVIVNGKPAARAGDTTSDGAIVEGSTNVFISGKPAAVVGGRTNCGGVVVGGGSNVFINGKPMARAGDSTAGCPK
>NC_007778.1|WP_011441675.1|3177644_3178577_+|methyltransferase-domain-containing-protein
MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWRALVVDPCAAGVRAALGDLFVEDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAAHWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGIDGSAPAVALAETAYGGHRVVFRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVNRDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLEDDSQFGIVIAI
>NC_007778.1|WP_011441673.1|3176027_3176354_-|NIPSNAP-family-protein
MIYESRVYRCVPGRLPALLKRFETITLKMFEKHGIRQAGFFTTLVGASNQELTYFLAWESLAERERKWAAFASDPDWLAAKAETEADGQIVDTITNQLLLPTAFSAVR
>NC_007778.1|WP_011441672.1|3175127_3175997_-|VOC-family-protein
MPCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPENIEPHRADAFSFGAYQRDYLARREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREGQRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWNPSFQIHANGARAAAAVVMIADNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARFAGLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR
>NC_007778.1|WP_011441671.1|3174267_3175131_-|3-deoxy-8-phosphooctulonate-synthase
MNKSIAPAPVVAAGDVKFGNALPLSVIAGPCQLESRAHALEVAAALQEIGKRLGIGIVYKTSFDKANRTSAASARGIGLDGALPIFAEIRDSIGLPVLTDVHEAGQCARAAEAVDILQIPAFLCRQTDLLLAAAATGRIVNVKKGQFLAPWDMGNVVAKITSAGNPKVLVTERGVSFGYNTLVSDMRALPIMAKTTGAPVIFDATHSVQQPGGKGTSSGGEREFVPVLARAAVAVGVAGVFIETHPDPDHAPSDGPNMVPLRDFESLLRTLMEFDALAKRRSGAGTI
>NC_007778.1|WP_011441670.1|3173038_3174268_-|MFS-transporter
MSQGDSAVVRPSLPPALKIIALSGFAASLSARALDPVLPRIASEFSVSIATAAGLAAVTAFTFAVVQPAIGALADMFGKARLMIVCLALLGFASLLGAVSSSFEVLFLCRILAGIGAGGVFPVALGLTSDLVEPGRRQVAIGRVLGGSMTGNLLGASASGVIGDVLGWRGVLAVLGVLVIVAALAVSFGFRNKPMRPGAPMDLAALRRGYRTIFSNPNAPICFAAVLVEGTCVMGAFPFVAAFLHDQGQESLAVAGLVIAGFAVGGLLYTLTVARLLPRLGVRGMMIGGGALVGLQLAIIAFGPPWQAQAVAFVAMGMGFYMLHGCVQVFASELSETARGTAMSLHSFFFFLGQTTGPIAYGFGLAHAGKVPTMLIAAITMLALGFILAVVLRPRPPTDAVESPRPDPA
>NC_007778.1|WP_011441669.1|3171343_3172855_-|L,D-transpeptidase
MRRLQIAAAGAVVAMAALTTLAEAASTKRTRPAPTETVAPRPAGEPIMAIISIKSQQVTLYDADGWILRAPVSTGTTGRETPAGVFAILEKNRDHRSSMYDDAWMPHMQRITWNGIALHGGPLPGYAASHGCVRMPYGFAETLFDRTRIGMRVIVSPQDTAPVDISHPALLVPTPDASSAAPVRAQTLAREADEAAAAAVDAKKAAKAAAREVAPLKATLRALERAKARAEAELKRADKVLGSAKTDDARAKAETQQQKAAQRAGEAAAQLANAIADAEAKRALADSTKEAARAAETRKAETAHVALDAKLAQEPVSIYISRETQKLYVRRNTHKPAPDGGGEVFDASIEVPVTIRDPHRPIGTHIFTAMAKTDIGLRWSAVTIDEGDGARAALDRITIPKEVLDRIGPTALPRSSIVISDEPLSVETNYRTEFVAVLKDHPQGGFITRKPTPAVMVADRDDGWDDGGFGFFFQRGPEPQPRNYRQQRGGRVYPPQPTPGWGW
>NC_007778.1|WP_011441681.1|3184223_3185360_-|helix-turn-helix-transcriptional-regulator
MSESSALSDLIGTIYDAALDPTLWIRTLEQSCDFVGGSSAALYWHDTATVRAQALYLIGEDPHYTKLYFEKYLSLNPTFPAAAFVEPGVIFTPTDIVPESELVKTRFHREWVQPQGIVDVIGVNLEKGTTASSLFNIRRTHKHGVADAGARERTALLVPHFQRAVAIGRLFQQASKAEAVLTETLDLVEAAVFLVGVNGRISFANGPGRAMLEEGTLLRERRNMLTAVAPESNRMLREIFIAAEDGDTSVGNRGVAIPLASSPHQRWFAHVLPLTSGDRSRNGSLPSAVAAVFVRKTSPVSPPPLEALANIYKLTASELRVLDAMTKVSSVRAASELLGIAQATVKTHLHNLFRKTGSHRQSDLVKLMAGFEPPPPSS
>NC_007778.1|WP_041798255.1|3185513_3186287_-|triose-phosphate-isomerase
MPVPAVRSLIAGNWKMNGLKAASSELDAILEGAAQLSSGVDLLVCPPATLIAAFADRLAAHANSALPVAIGAQDCHTNAAGAHTGDISAEMLADAGARTIIVGHSERRADHAETDAIVRTKAQAVWRAGLVAIVCVGETQGERNAGHTLDVVAGQLAGSLPDGATAANLVVAYEPVWAIGTGMTPTAADVEEVHGFIRQTLTQRFNGEGERMRLLYGGSVKPSNASELMAVPHVNGALVGGASLKASDFLAIAAGCP
>NC_007778.1|WP_011441683.1|3186539_3188441_+|peptidylprolyl-isomerase
MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIADIFRGFGRSTLATIGGTEITTEQFRQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETMKSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSSTMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVTVTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASFDDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLNEVSQPIQGAFGTALVRVSKVEPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIEAIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTESINYQNGYVWFDVLGVTPSRERSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGKLAEVAPQGVKVETATGLKREGASAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKLKDALVQRMNDEQVGEYIAWVEKQIGTKINQQAVAQATGAATN
>NC_007778.1|WP_041798729.1|3188478_3189495_+|anthranilate-phosphoribosyltransferase
MIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEITGAVTTMRAKMLTVAAPPDAVDVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVAELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAATLIVAGKAKDLKEGVALGAQSIDSGAAEARLKKLIAVSAAA
>NC_007778.1|WP_011441685.1|3189640_3190438_+|indole-3-glycerol-phosphate-synthase-TrpC
MSDILTKIEAYKREEIAAAKRERPIASLEADARAAPPPRGFVRALRAKHAAGDYALIAEIKKASPSKGLIRADFDPPALAQAYEQGGAACLSVLTDTPSFQGSLDYLVAARAAVSLPALRKDFMYDTYQVVEARAHGADCILIIMAALDDAEARDIEDAAFDLGMDVLLEVHDRAELDRALQLRSPMIGVNNRNLRTFEVTLATSEALAPLIPKDRLMVGESGIFTPDDLARLARVGMSTFLVGESLMRQEDVATATRALLARAA
>NC_007778.1|WP_011441686.1|3190448_3190970_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSKKAKPTRAAAPALTHIGTSGEARMVDVSEKSATERVAVAEGRVVMKKATLDLILSGDAKKGDVLGTARIAGIMAAKRTSELIPLCHPLALSKVTLDIVPDKKLPGCIVRATVKVTGPTGVEMEALTAVSVACLTIYDMIKAVERGVRIDGIHLIAKTGGKSGDYVAGAASK
>NC_007778.1|WP_011441687.1|3191008_3193579_+|cation-translocating-P-type-ATPase
MPPVSTPASAPTGLSEAEAGARLAGEGPNELPSPDRRTLLGIVLEVMREPMLALLLGGGVVYLALGDFKEALILLVFASLSIVITVVQESRTERVLEALRDLTSPRALVIRDGERRRIAGREVVRGDLMVLSEGDRVAADAVLLSADDIQADESLLTGESVPVRKIARDEADAAVSHRPGGDDQPTVYSGSLVVRGGGIAEVIATGPRSEIGKIGQALGTLQIEPPRLQTQTRKLVRVFGIIGGAFSLLVVVLYGTLRGGWLDAVLAGITVGMSMLPEEFPVVLAVFMAMGAWRISQARVLTRRAAAIESLGSATVLCTDKTGTLTENRMSVAELRLTSGEMFRPREGAELPATFRALLETGLLASAPDPFDPMDRALHRLADSHLPDARGDRSMVHSYGLRRDLLAMTQVWRDHDDPGDFIVAAKGAPEAIARMCGLDDAELLRLSQTIDAMAADGLRVLGVARATHPNDDWPETPLGFGFEFLGLVGLADPLRAAVPAAVADCRAAGIRVVMITGDYPATAQAIARQAGIDADTCVSGDEIARLDDVALAQRLRDATVFARIMPEQKLRIVDALKSGGDVVAMTGDGVNDAPSLKSAHIGIAMGGRGTDVAREASAIVLLDDDFASIVKAIRLGRRIYDNLVKAMGFIFAVHVPIAGLALLPLLFGLPILLGPIHIAFLEMIIDPVCSIVFEAETAEDDVMRRPPRDPEQPLFTPALIGWGLVQGLLVFALVAGVFVIGQFRAMPENELRALTFFALVLSFVCLIFVNRSFSTSILAALRRPNPMLAVVLAIVGCVLGLSLAWPWLRDLFKFGPLHWDDLGLTAAAALAVLILLELIKPLWRGRIGSAASRRQA
>NC_007778.1|WP_157038825.1|3193614_3193755_-|hypothetical-protein
MQLARVEPRPVGRRACEFERHIYRCEDCANTSRFVIDRQAVDRLSA
>NC_007778.1|WP_011441688.1|3193705_3194194_-|hypothetical-protein
MHVTTTIPEPGVIAGSLQHPASVHDHSAQVYDDPAQVLRDNALGTAEKRAILSSWASDANAIEQQPWLRSLPGSGRTVPLAAILAALRRLDDDDPPPKGGAAIRLCGFGRDSESFEQIQPLGRRHHGLAQFSKHVRSRALPRLRRDHAARTRRAAAGRAACL
>NC_007778.1|WP_011441689.1|3194450_3194954_+|Hsp20/alpha-crystallin-family-protein
MNMRGMIPWGRNNQPLARAFDSDPFLSLHREMNRLFDDVFRGFDATPALSNRLAAFGNAWPKLEIADTDKELKVAAEIPGMEEKDIEVLLDDGALTIRGEKISTTEDKTRQFSEHFYGKFERRIPLDVPVAADKVAAAFKNGVLTVTLPKLEPVPGTSKRIAIQPGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	1550232-1550264	0	1.0
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	3988558-3988590	0	1.0
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	4702737-4702769	0	1.0
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	5320898-5320930	0	1.0
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	1333846-1333878	1	0.97
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	4778348-4778380	1	0.97
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	5147605-5147637	1	0.97
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	61975-62007	2	0.939
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	421557-421589	2	0.939
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	954506-954538	2	0.939
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	965172-965204	2	0.939
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007778.1	1137981-1138013	2	0.939

1. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 1550232-1550264, mismatch: 0, identity: 1.0

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctcccgcttgcgggagagggt	Protospacer
*********************************

2. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 3988558-3988590, mismatch: 0, identity: 1.0

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctcccgcttgcgggagagggt	Protospacer
*********************************

3. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 4702737-4702769, mismatch: 0, identity: 1.0

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctcccgcttgcgggagagggt	Protospacer
*********************************

4. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 5320898-5320930, mismatch: 0, identity: 1.0

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctcccgcttgcgggagagggt	Protospacer
*********************************

5. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 1333846-1333878, mismatch: 1, identity: 0.97

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctcccgcctgcgggagagggt	Protospacer
*******************.*************

6. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 4778348-4778380, mismatch: 1, identity: 0.97

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctctcccgcttgcgggagagggt	Protospacer
*******.*************************

7. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 5147605-5147637, mismatch: 1, identity: 0.97

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctctcccgcttgcgggagagggt	Protospacer
*******.*************************

8. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 61975-62007, mismatch: 2, identity: 0.939

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctcgcccgcttgcgggagagggt	Protospacer
*******.***** *******************

9. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 421557-421589, mismatch: 2, identity: 0.939

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctccctctccagcctgcgggagagggt	Protospacer
**************** **.*************

10. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 954506-954538, mismatch: 2, identity: 0.939

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctctcccgcctgcgggagagggt	Protospacer
*******.***********.*************

11. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 965172-965204, mismatch: 2, identity: 0.939

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctctcccgcctgcgggagagggt	Protospacer
*******.***********.*************

12. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to position: 1137981-1138013, mismatch: 2, identity: 0.939

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgccccctctcccgcctgcgggagagggt	Protospacer
*******.***********.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP054625	Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence	24833-24865	3	0.909
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	59655-59687	3	0.909
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	5503-5535	4	0.879
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	124866-124898	4	0.879
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	99596-99628	4	0.879
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	200386-200418	4	0.879
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	16673-16705	5	0.848
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	99638-99670	5	0.848
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	124747-124779	5	0.848
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	200443-200475	5	0.848
NC_007778_1	1.1\|693337\|30\|NC_007778\|CRISPRCasFinder	693337-693366	30	NZ_CP025548	Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence	74256-74285	6	0.8
NC_007778_1	1.1\|693337\|30\|NC_007778\|CRISPRCasFinder	693337-693366	30	NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	101595-101624	6	0.8
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP054625	Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence	24916-24948	6	0.818
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP054625	Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence	24826-24858	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	196610-196642	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	233771-233803	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	14-46	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	59695-59727	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	5510-5542	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	59648-59680	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	99589-99621	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	124859-124891	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	200379-200411	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	317604-317636	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	481855-481887	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1391961-1391993	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	177516-177548	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1106109-1106141	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	780507-780539	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1106231-1106263	7	0.788
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	16680-16712	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	99645-99677	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	124754-124786	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	196603-196635	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	200450-200482	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	233778-233810	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	317568-317600	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	317561-317593	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	515318-515350	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	481862-481894	8	0.758
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	21-53	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	59702-59734	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	317611-317643	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	87204-87236	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	960015-960047	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP013072	Sphingobium indicum B90A plasmid pSRL2, complete sequence	79517-79549	9	0.727
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	515325-515357	10	0.697
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	559082-559114	11	0.667
NC_007778_3	3.1\|1211992\|33\|NC_007778\|CRISPRCasFinder	1211992-1212024	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	13649-13681	11	0.667

1. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP054625 (Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.909

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ggcgttctccctctcccgcttgcgggagagggt	Protospacer
.***. ***************************

2. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 3, identity: 0.909

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ggcggactccctctcccgcttgcgggagagggt	Protospacer
.*** .***************************

3. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 4, identity: 0.879

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ctcttgctccctctcccgcttgcgggagagggt	Protospacer
  * .****************************

4. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 4, identity: 0.879

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtcttgctccctctcccgcttgcgggagagggt	Protospacer
. * .****************************

5. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 4, identity: 0.879

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtcggactccctctcccgcttgcgggagagggt	Protospacer
. ** .***************************

6. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 4, identity: 0.879

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtcggactccctctcccgcttgcgggagagggt	Protospacer
. ** .***************************

7. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.848

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ttcttgctccctctcccgcttgcgggagagggc	Protospacer
  * .***************************.

8. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.848

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ttcttgctccctctcccgcttgcgggagagggc	Protospacer
  * .***************************.

9. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.848

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtcttgctccctctcccgcttgcgggagagggc	Protospacer
. * .***************************.

10. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 5, identity: 0.848

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ctcttgctccctctcccgcttgcgggagagggc	Protospacer
  * .***************************.

11. spacer 1.1|693337|30|NC_007778|CRISPRCasFinder matches to NZ_CP025548 (Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ccggggtgaggtcgccgcgagtcgcagccc	CRISPR spacer
ccggggtggggtcgccgcgggtcaaggacc	Protospacer
********.**********.***. .* **

12. spacer 1.1|693337|30|NC_007778|CRISPRCasFinder matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggggtgaggtcgccgcgagtcgcagccc--	CRISPR spacer
acggggtgaggtcgccgcggctcg--gccggg	Protospacer
 ******************. ***  ***

13. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP054625 (Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
acccggccccctctcccgcttgcggcagagggg	Protospacer
* *  **.***************** ******

14. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP054625 (Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggttggggac	Protospacer
       **************************

15. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gctttactccctctcccgcttgcgggagagggc	Protospacer
. . ..**************************.

16. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
tttttactccctctcccgcttgcgggagagggc	Protospacer
  . ..**************************.

17. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ttcttaccccctctcccgcttgcgggagagggc	Protospacer
  * ..*.************************.

18. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ctgccaccccctctcccgcttgcgggagagggc	Protospacer
    *.*.************************.

19. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggtgggggtg	Protospacer
       **************************

20. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggtgggggtg	Protospacer
       **************************

21. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggtgggggtg	Protospacer
       **************************

22. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggtgggggtg	Protospacer
       **************************

23. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggtgggggtg	Protospacer
       **************************

24. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
cactatctccctctcccgcctgcgggagagggc	Protospacer
 .*   *************.************.

25. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
taaccattccctctcccgcctgcgggagagggt	Protospacer
 .  *..************.*************

26. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.788

---agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtttgcgc---ccctctcccgtttgcggaagagggg	Protospacer
    ****   **********.******.******

27. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.788

---agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtttgcgc---ccctctcccgtttgcggaagagggg	Protospacer
    ****   **********.******.******

28. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctcccgctcccgcttccggcggcggcg	Protospacer
*********** ********* *** .* **

29. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctcccgctcccgcttccggcggcggcg	Protospacer
*********** ********* *** .* **

30. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
agcgcgctcccgctcccgcttccggcggcggcg	Protospacer
*********** ********* *** .* **

31. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcaggggtg	Protospacer
       *************************.

32. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcaggggtg	Protospacer
       *************************.

33. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcaggggtg	Protospacer
       *************************.

34. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcgggggtg	Protospacer
       *************************.

35. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcaggggtg	Protospacer
       *************************.

36. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcttgcgggagagggcaggggtg	Protospacer
       *************************.

37. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gatcgatcccctctcccgcttgcgggagagggt	Protospacer
...  ...*************************

38. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------cccctctcccgcttgcgggagagggttagggtg	Protospacer
       .*************************

39. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
cacactaaccctctcccgcgggcgggagagggt	Protospacer
 .*.*   ***********  ************

40. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcctgcgggagagggttaaggtg	Protospacer
       ************.*************

41. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------cccctctcccgcttgcgggagagggcaggggtg	Protospacer
       .************************.

42. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------cccctctcccgcttgcgggagagggcaggggtg	Protospacer
       .************************.

43. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------tccctctcccgcctgcgggagagggccggggtg	Protospacer
       ************.************.

44. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtttgcccccctttcccgcttgcgggagagggg	Protospacer
. .   *.****.*******************

45. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
gtttgcccccctttcccgcttgcgggagagggg	Protospacer
. .   *.****.*******************

46. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP013072 (Sphingobium indicum B90A plasmid pSRL2, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
ccccctaaccccctcccgcttgcgggagggggg	Protospacer
  * *   ***.****************.***

47. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

agcgcgctccctctcccgcttgcgggagagggt-------	CRISPR spacer
-------accctctcccgcgggcgggagagggtcagggtg	Protospacer
        ***********  ************

48. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 11, identity: 0.667

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
tctatcatccccctcccgcttgcgggaggggac	Protospacer
  ...  ****.****************.**..

49. spacer 3.1|1211992|33|NC_007778|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.667

agcgcgctccctctcccgcttgcgggagagggt	CRISPR spacer
tttttcgcccctctcccgcttccaggagagggg	Protospacer
  . .  .************* *.********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1744454 : 1753835

Chrysochromulina_ericina_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011440446.1\|1744454_1746398_+	asparagine synthase (glutamine-hydrolyzing)	A0A0N9QYX6	Chrysochromulina_ericina_virus	1.9e-29	26.2
WP_041798073.1\|1746388_1747255_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041798074.1\|1747289_1748408_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_041798076.1\|1748404_1749373_+	NAD-dependent epimerase/dehydratase family protein	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	1.0e-07	23.7
WP_011440450.1\|1749349_1750324_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	2.1e-69	44.2
WP_011440451.1\|1750580_1751852_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	6.8e-20	26.3
WP_011440452.1\|1751866_1752883_+	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	8.4e-13	30.9
WP_011440453.1\|1752995_1753835_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-09	23.3

DBSCAN-SWA_2

1758034 : 1764644

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011440458.1\|1758034_1759966_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	4.6e-36	23.4
WP_041798078.1\|1759962_1760790_-	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	8.7e-16	27.5
WP_011440460.1\|1761211_1762273_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-95	52.2
WP_011440461.1\|1762294_1762852_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	6.9e-33	42.6
WP_011440462.1\|1762855_1763752_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	7.2e-32	36.1
WP_011440463.1\|1763765_1764644_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-92	56.1

DBSCAN-SWA_3

2839535 : 2848134

Mycoplasma_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011441371.1\|2839535_2841038_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.4e-48	38.8
WP_011441372.1\|2841052_2841505_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_011441373.1\|2841624_2842161_+	hypothetical protein	NA	NA	NA	NA
WP_011441374.1\|2842197_2844075_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.3e-63	30.9
WP_011441375.1\|2844251_2844674_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	9.8e-16	37.9
WP_085978197.1\|2844823_2845528_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011441377.1\|2846176_2846380_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.5e-09	45.9
WP_011441378.1\|2846399_2847056_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.6e-20	33.7
WP_011441379.1\|2847060_2848134_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.4e-58	39.7

DBSCAN-SWA_4

3122295 : 3130674

uncultured_Mediterranean_phage(100.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011441624.1\|3122295_3122949_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-25	45.7
WP_011441625.1\|3123167_3123539_+	response regulator	NA	NA	NA	NA
WP_011441626.1\|3123698_3124466_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-36	39.5
WP_011441627.1\|3124690_3124969_+	hypothetical protein	NA	NA	NA	NA
WP_041798249.1\|3125179_3125794_-\|protease	serine protease	NA	NA	NA	NA
WP_011441629.1\|3125924_3127355_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.6e-97	43.6
WP_011441630.1\|3127591_3128410_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	4.7e-54	47.2
WP_011441631.1\|3128406_3128973_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_011441632.1\|3129207_3129447_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.3e-08	63.6
WP_011441633.1\|3129597_3130674_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.4e-42	49.4

DBSCAN-SWA_5

3962313 : 3984531

Rhodobacter_phage(25.0%)

transposase,head,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011442336.1\|3962313_3963114_-	glycoside hydrolase family 19 protein	A0A2H4J3Y3	uncultured_Caudovirales_phage	1.5e-25	43.0
WP_041798318.1\|3965131_3968989_-	Gene transfer agent (GTA) orfg15-like protein	A0A0B5A7K5	Paracoccus_phage	4.2e-230	40.3
WP_011442339.1\|3969294_3969738_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.1e-32	51.5
WP_011442340.1\|3969791_3970712_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	1.9e-56	41.0
WP_011442341.1\|3970910_3971546_-	DUF2460 domain-containing protein	A0A0K1Y6G4	Rhodobacter_phage	9.5e-47	48.2
WP_011442342.1\|3971821_3972412_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	4.7e-08	47.7
WP_011442343.1\|3972408_3972612_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_011442344.1\|3972608_3972923_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011442345.1\|3973016_3973424_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	8.6e-17	37.3
WP_011442346.1\|3973437_3973848_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011442347.1\|3974026_3974347_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011442348.1\|3974343_3974913_-	hypothetical protein	NA	NA	NA	NA
WP_157038936.1\|3975037_3975742_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_011442350.1\|3976001_3976319_+	hypothetical protein	NA	NA	NA	NA
WP_011442351.1\|3976343_3976592_-	hypothetical protein	NA	NA	NA	NA
WP_157038937.1\|3976756_3977917_-	ATP-binding protein	A0A0U4IJ26	Arthrobacter_phage	2.8e-68	41.0
WP_011442353.1\|3977993_3978887_-	hypothetical protein	NA	NA	NA	NA
WP_157038851.1\|3979006_3979165_-	hypothetical protein	NA	NA	NA	NA
WP_157038852.1\|3979316_3980027_+	7-cyano-7-deazaguanine synthase QueC	NA	NA	NA	NA
WP_080507800.1\|3981885_3982551_+	hypothetical protein	NA	NA	NA	NA
WP_011442356.1\|3982547_3983402_+	hypothetical protein	NA	NA	NA	NA
WP_157038853.1\|3983373_3983574_-	hypothetical protein	NA	NA	NA	NA
WP_011442357.1\|3983586_3984531_-\|transposase	IS1595-like element ISRpa1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007778

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection