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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007760 Anaeromyxobacter dehalogenans 2CP-C, complete genome 7 crisprs DEDDh,WYL,csa3,cas3HD,Cas9_archaeal,cas4,DinG,cas3 1 2 2 0

Results visualization

1. NC_007760
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_1 294880-294952 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_2 3760102-3760190 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_3 3945808-3945881 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_4 3962588-3962670 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_5 4540872-4540972 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_6 4605419-4605577 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007760_7 4613039-4613134 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_007760_6 6.1|4605438|28|NC_007760|CRT 4605438-4605465 28 NC_007760.1 4605406-4605433 0 1.0

1. spacer 6.1|4605438|28|NC_007760|CRT matches to position: 4605406-4605433, mismatch: 0, identity: 1.0

tcacctagccaattactctgggtcgggg	CRISPR spacer
tcacctagccaattactctgggtcgggg	Protospacer
****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 NZ_CP042998 Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence 10208-10232 2 0.92
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 CP000663 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence 132477-132501 2 0.92
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 NZ_CP031752 Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence 79661-79685 2 0.92
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 NZ_CP020372 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence 278611-278635 4 0.84
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 NZ_CP032676 Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence 370754-370778 4 0.84
NC_007760_1 1.1|294904|25|NC_007760|CRISPRCasFinder 294904-294928 25 NZ_CP016354 Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence 12723-12747 4 0.84
NC_007760_3 3.1|3945831|28|NC_007760|CRISPRCasFinder 3945831-3945858 28 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 151481-151508 4 0.857
NC_007760_3 3.1|3945831|28|NC_007760|CRISPRCasFinder 3945831-3945858 28 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 321982-322009 5 0.821
NC_007760_3 3.1|3945831|28|NC_007760|CRISPRCasFinder 3945831-3945858 28 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 107013-107040 5 0.821

1. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 2, identity: 0.92

gcgggccgcggccgtggggccgcgg	CRISPR spacer
ccgggccgcgcccgtggggccgcgg	Protospacer
 ********* **************

2. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 2, identity: 0.92

gcgggccgcggccgtggggccgcgg	CRISPR spacer
gcgggccgcggccgcggggccgctg	Protospacer
**************.******** *

3. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 2, identity: 0.92

gcgggccgcggccgtggggccgcgg	CRISPR spacer
gcgggccgcggccgcggggccgctg	Protospacer
**************.******** *

4. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 4, identity: 0.84

gcgggccgcggccgtggggccgcgg	CRISPR spacer
cctcgccgcggccctggggccgcgg	Protospacer
 *  ********* ***********

5. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 4, identity: 0.84

gcgggccgcggccgtggggccgcgg	CRISPR spacer
aggggccgcgacggtggggccgcgg	Protospacer
. ********.* ************

6. spacer 1.1|294904|25|NC_007760|CRISPRCasFinder matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 4, identity: 0.84

gcgggccgcggccgtggggccgcgg	CRISPR spacer
ccgggccgcggccgtccggccgcga	Protospacer
 **************  *******.

7. spacer 3.1|3945831|28|NC_007760|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 4, identity: 0.857

agcccgtgtgcgcgatttagcggccctc	CRISPR spacer
agcccgtgtgcgcgatttcgcggcgccg	Protospacer
****************** ***** *. 

8. spacer 3.1|3945831|28|NC_007760|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 5, identity: 0.821

agcccgtgtgcgcgatttagcggccctc	CRISPR spacer
accgcgcgtgcgcgatttcgcggccctt	Protospacer
* * **.*********** ********.

9. spacer 3.1|3945831|28|NC_007760|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 5, identity: 0.821

agcccgtgtgcgcgatttagcggccctc	CRISPR spacer
accgcgcgtgcgcgatttcgcggccctt	Protospacer
* * **.*********** ********.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3099821 : 3107691 9 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 4925412 : 4934441 8 Synechococcus_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage