CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_007953	Paraburkholderia xenovorans LB400 chromosome 3, complete sequence	1 crisprs	NA	1	3
NC_007951	Paraburkholderia xenovorans LB400 chromosome 1, complete sequence	3 crisprs	WYL,cas3,RT,DinG,DEDDh,csa3	2	6
NC_007952	Paraburkholderia xenovorans LB400 chromosome 2, complete sequence	0 crisprs	csa3,WYL,RT,DinG,cas3	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007953_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007953_1

273785-273856

Orphan

Consensus_repeat	Method
TAAGCGCTAACTCCAGTCGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007953_1

>merge|NC_007953|1|273785-273856|CRISPRCasFinder
TAAGCGCTAACTCCAGTCGACAGCTTTGCATGGGACTGGAATAAGCGCTAAAGCGCTAACTCCAGTCGACAG

>NC_007953|1|1|273785-273856|CRISPRCasFinder
TAAGCGCTAACTCCAGTCGACAG	CTTTGCATGGGACTGGAATAAGCGCT
AAAGCGCTAACTCCAGTCGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007953.1\|WP_081435624.1\|277154_277634_-\|DUF3331-domain-containing-protein	unknown	unknown	gnl\|CDD\|288644
NC_007953.1\|WP_148311803.1\|286641_286980_+\|hypothetical-protein	unknown	unknown	unknown
NC_007953.1\|WP_011493430.1\|268427_269438_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_007953.1\|WP_011493446.1\|284805_286098_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_007953.1\|WP_011493444.1\|282402_283107_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_007953.1\|WP_011493442.1\|279816_281295_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_007953.1\|WP_011493428.1\|265656_267183_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NC_007953.1\|WP_011493437.1\|275710_276808_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NC_007953.1\|WP_011493433.1\|271699_272812_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|379770
NC_007953.1\|WP_011493426.1\|263122_264079_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_007953.1\|WP_011493445.1\|283173_284715_-\|hopanoid-C-3-methylase-HpnR	unknown	unknown	gnl\|CDD\|275160
NC_007953.1\|WP_011493431.1\|269648_270785_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NC_007953.1\|WP_011493429.1\|267219_268116_+\|3-hydroxyisobutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|130753
NC_007953.1\|WP_011493434.1\|273001_273751_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NC_007953.1\|WP_040123766.1\|270903_271680_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236373
NC_007953.1\|WP_011493441.1\|278559_279099_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|369534
NC_007953.1\|WP_063719384.1\|281447_282032_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NC_007953.1\|WP_011493425.1\|262063_263011_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NC_007953.1\|WP_011493435.1\|273868_274852_+\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|224936
NC_007953.1\|WP_011493427.1\|264219_265533_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927

Protein	Function_ID	Function_description	E-value
NC_007953.1\|WP_081435624.1\|277154_277634_-\|DUF3331-domain-containing-protein	gnl\|CDD\|288644	pfam11811, DUF3331, Domain of unknown function (DUF3331). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.	5.53268e-26
NC_007953.1\|WP_011493430.1\|268427_269438_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	3.15977e-48
NC_007953.1\|WP_011493446.1\|284805_286098_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.37888e-108
NC_007953.1\|WP_011493444.1\|282402_283107_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.6281e-12
NC_007953.1\|WP_011493442.1\|279816_281295_+\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	8.74798e-26
NC_007953.1\|WP_011493428.1\|265656_267183_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NC_007953.1\|WP_011493437.1\|275710_276808_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.17534e-39
NC_007953.1\|WP_011493433.1\|271699_272812_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|379770	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase. This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from pfam00378 in the structure of it's C-terminus.	1.18373e-163
NC_007953.1\|WP_011493426.1\|263122_264079_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.22042e-34
NC_007953.1\|WP_011493445.1\|283173_284715_-\|hopanoid-C-3-methylase-HpnR	gnl\|CDD\|275160	TIGR04367, protein_of_the_SAM_superfamily, hopanoid C-3 methylase HpnR. Members of this are family are a B12-binding domain/radical SAM domain protein required for 3-methylhopanoid production. Activity was confirmed by mutant phenotype by disrupting this gene in Methylococcus capsulatus strain Bath. This protein family should only occur in genomes that encode a squalene-hopene cyclase (see TIGR01507). [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_007953.1\|WP_011493431.1\|269648_270785_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NC_007953.1\|WP_011493429.1\|267219_268116_+\|3-hydroxyisobutyrate-dehydrogenase	gnl\|CDD\|130753	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase. 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). [Energy metabolism, Amino acids and amines].	1.8333e-149
NC_007953.1\|WP_011493434.1\|273001_273751_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.31912e-94
NC_007953.1\|WP_040123766.1\|270903_271680_+\|enoyl-CoA-hydratase	gnl\|CDD\|236373	PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.	4.95242e-172
NC_007953.1\|WP_011493441.1\|278559_279099_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|369534	pfam07813, LTXXQ, LTXXQ motif family protein. This protein family includes two copies of a five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP. This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy may indicate that these two proteins are functionally related.	5.61587e-09
NC_007953.1\|WP_063719384.1\|281447_282032_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.11357e-42
NC_007953.1\|WP_011493425.1\|262063_263011_+\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	1.91279e-152
NC_007953.1\|WP_011493435.1\|273868_274852_+\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.60923e-112
NC_007953.1\|WP_011493427.1\|264219_265533_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.42964e-170

>NC_007953.1|WP_011493434.1|273001_273751_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKVVVAVKRVVDYNVKVRVKADGTGVDIANVKMSMNPFDEIAVEEAVRLKEAGVATEVIAVSAGVTQAQETLRTALAIGADRAILIESNEELQPLAVAKLLKALVDREQPSLVILGKQAIDDDSNQTGQMLAALANLPQATFASKVVVADGKATVSREVDGGAETLSLTLPAVVTTDLRLNEPRYVTLPNIMKAKKKPLEVVKPEDLGVDVTPRLKTLKVVEPPKRPAGVKVPDVQTLVGKLKTEARVL
>NC_007953.1|WP_011493433.1|271699_272812_+|enoyl-CoA-hydratase/isomerase-family-protein
MNVNQQAETAAQELVIQEINHVGVVTLNRPKAHNALTHAMVLALTERLSQWKDDPAIYGVVIRGAGDRAFCAGGDIRALYQSYRDGSPLYRDFFVDEYRLDHMLHQYPKPCVAVMDGLVMGGGMGIAQGAALRVVTSRSQIAMPETAIGLFPDVGASYFLAKMPVELGLYLGITGVTLNAADALFAGLADTFAESNHLNDLDGLLSAITWTREPLADLRNAIRTGHRADSGRPSLEALMPAIQHHFDPARSIGQVIDSLDAERDPRYGEWASTTAETLRQRSPLMMCVTREQLLRGRHAELADCFRMELGMVYRAFDDGDVIEGIRALLIDKDKAPRWRAATVDEVTQPMVSRFFDSPWSRDGHPLRDLA
>NC_007953.1|WP_040123766.1|270903_271680_+|enoyl-CoA-hydratase
MIDVDRLDDGRVAVLTLRRPPANAFTPEGLSQLQRTVESLDEDERVRAVVITGEGPKFFSAGADLNAFADGNRDVARVAAQRFGAAFEALQNARPVVIAAINGYAMGGGLECALACDIRIAEEQAQLALPETAVGLLPCGCGTQTLPWLVGEGWAKRMILTGERVDAATALRIGLVEEVVGRGAARDAAVAMAQRVTTLSPQAVTFSKGLIHHARNGVPRTAALALERERFVDLFDGADQQEGVRAFLEKRAPRWHNT
>NC_007953.1|WP_011493431.1|269648_270785_+|acyl-CoA-dehydrogenase
MPDSFTDEQRMIRDAARDFATQCLAPHAAKWDRDGDIPQNIVSQLGELGLMGMTVPAEWGGTYTDYVAYALAVEEIAAGCAACATMMSVHNSVGCSPILNFGTDEQKSLYLADLASGRAIGAFCLTEPQAGSEAHNLRTRAVLRDGTWVLNGSKQFVTNGRRAAVAIVFAVTDPDAGKRGISAFIVPTHTPGFKVGKPEKKLGIRASDTCPVTLEDCAVPESTLLGRRGEGLKIALSNLEGGRIGIAAQAIGIARAAFDAARSYAAQRIQFGKPIREHQSVANMLADMITRLNAARLLVHHAARLRSAGLPCLSEASQAKLYASEVAEEVCSQAIQIHGGYGYLEDYPVERHYRDARITQIYEGTSEVQRMVIARQLD
>NC_007953.1|WP_011493430.1|268427_269438_-|AraC-family-transcriptional-regulator
MQLAAPKGTIAICFVEKALQPVRERGLDIDVLLAAAGIAPRLLALPQTRVSAASYSTLWRQINHALDDEFFGQDSRRMKVGSFAMLCHIVIHCQTLGQALRRALRYFDLLLDDLSCTVSVERADARITLHVRAGTPVRIFAHETLLVMLHGLMCWLVGRRIRIRVAHFAYPEPAYSTEYHLMYSPVLEFGCPCTDIVFDGSYLDLPVIQTEQTLKSFLRTAPENVVLKYKNQHGLAARIREKLKTQPLDRWPTFDGLATSLDLGASTLRRRLKDEGQTYQIIKDELRRDMAIGFLCDTKKNVDEIAIELGFAEPSAFHRAFRRWTGARPGAYRIRN
>NC_007953.1|WP_011493429.1|267219_268116_+|3-hydroxyisobutyrate-dehydrogenase
MKIGFIGLGNMGAPMAHNLLKAGHTVNVFDLNAQAVQALVDAGARAAGSPKAAVTDVECVVTMLPAAAHVRSVLTADDGVLAGIAKGVTIIDSSTIDPASVKALAELAAQHGNTLVDAPVSGGTGGAAAGTLTFMVGGSAAAYEQVKPVLSAMGKNIVHCGDTGTGQVAKICNNLVLGITMAGVAEAMSLGAALGIDPKVLGGIINTSTGRCWSSDTYNPFPGVIEAAPSSRGYTGGFGTDLMLKDLGLATDAARSARQPVYLGALAQQLYQTMSTKGAGRLDFSAVIKLYQFEEKPR
>NC_007953.1|WP_011493428.1|265656_267183_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MNAVTRESSGNIGTARLLIAGEFVESKTTEWRDIVNPATQEVLARVPFATAEEVDAAIRSAHAAFATWKNTPIGARMRIMLKYQALIREHMPRIAKTLSAEQGKTIPDAEGDIFRGLEVVEHAASIGTLQQGEFAENVAGGVDTYTLRQPIGVCVGITPFNFPAMIPLWMFPMAIVCGNTFVLKPSEQDPLSTMQLVELALEAGVPKGVLNVVHGGKDVVDALCTHELVKAISFVGSTAVGTHVYRLGSEHGKRVQSMMGAKNHAVVLPDANREQTLNALAGAGFGAAGQRCMATSVVVLVGAAQQWLPDLVAKAKTLKVNAGNEPNTDIGPVVSRAAKQRILDLIETGVKEGATLALDGRDVKVAGYEQGNFIGPTVFTDVTTDMEIYRQEIFGPVLVVLNAATLDDAIALVNRNPFGNGVGLFTQSGAAARKFQSEIDIGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTARWFDDDTVNDGVNTTISLR
>NC_007953.1|WP_011493427.1|264219_265533_+|MHS-family-MFS-transporter
MEMQSNPHGAAVIAPVPKRARDYLLAGWASMAGTTIEWYDFFLYGTAAALVFNKIFFPTLDPILGTMAAFATYGVGFIGRPMGGIVFGHFGDRIGRKSMLLVTLLLMGIPSMVIGLIPSYQSIGYWAAGLLVAMRFLQGMAVGGEWGGAVLMAVEHAPPGRKGFFGSLPQTGVGFGLILSSLAMAAVTALPEADLLAWGWRVPFLASILLVIIGWVIRVRVPESPDFERVKALGEPVKAPILAAMRRHPRELLIILGARTAENTWFYLVVAFALAYAANQLKIPKAAILHAITAGAVLSLFTMPFCGYLSDRIGQKRLFLIGLVIMCVFAAPFFAMLATRHPATVWWAMVLGVGVVFPILYAPESQLFASQFPAEIRYSGISLSVQIAGVLGGGVAPMIATALLALGSGNPHYVVAYMVALGIVALICTLLMRAGAE
>NC_007953.1|WP_011493426.1|263122_264079_-|LysR-family-transcriptional-regulator
MQKNTSNAHANLNWDDLRYFLEVARTQRASGAAKRLGVDHTTVARRVRELEAALGTVLFDKSRADGFVLTAEGQRLVAYADAVETSVHSASEQFAGAAQSLSGHVRIGSTEGFGCFFLSPQLTRFTARHPGISIDLLPVPHFVSLSKREADMAITLERPERGQYVFTKLCDYRLRLYGTREYLEAHAPIGAVADLRNHAFIDYVADLAFSHELLYLNRTIPNVTARLCSTSVIAQYYAALQGNALAILPCFMGAPDPRLVPILPEEIVVTRHFWLSSREDLRKLRRVASLWDYLRAAADANRPFLMGESREMHYVDFQ
>NC_007953.1|WP_011493425.1|262063_263011_+|cysteine-synthase-A
MSNFRGVIYDSIVDTIGATPLVRLSKLAAACDCRADVVGKLEFFNPLASVKDRIGIALIETAERAGRIKPGTLLIEPTSGNTGIGLAFVAAAKGYPLVLCMPESASIERRKMVGLLGAKVELTPASEGMGGAIRRAEALKRNHPDSLILQQFDNPANPDAHRHTTAEEIWNDTAGRVDIIVSGIGTGGTITGIGQTLKARKPELQMIGVEPSGSAVLSGGKPGPHKQQGIGSGFLSSILDLSVVDEIVTATDEDAIQTARQAAALEGVPIGISSGAALSVALRVGRRPGNAGKLIVVIVPSFAERYLSTELFADV
>NC_007953.1|WP_011493435.1|273868_274852_+|electron-transfer-flavoprotein-subunit-alpha
MTILVIAEHDAPKEAPLGGNASLKAATLNTVAAAAVIATLAAHDIHVLVAGHNAQGAAEEAAKIAGVTKVLLADAPQLEAGLAENVAATVLNIAKDYSHILAPATAYGKNIAPRIAAKLDVAQISDITAVDSADTFERPIYAGNAIATVQSQDPIKVITVRTTGFDAVAAEGGSATVGKIEAAADAGVSQFVSREVTKLDRPELTSAKIIVSGGRGLGNGENYTKVLEPLADRLNAALGASRAAVDAGFVPNDYQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGVVGDLFTVVPEFASQLAQLD
>NC_007953.1|WP_011493437.1|275710_276808_+|MBL-fold-metallo-hydrolase
MAEPQHTASGTVAELTYPFAGPPAPGQTREVAPGVLWIRMPMPLALDHINLWAIADGAGWTVVDTGLRNAGTAEVWERLFEEALGGRPVTRVIVTHMHPDHIGMAGWLTRRFNCRLWMTRLEYLHCRVLVADNGREAPPDAIRFLRGAGWDDSAIEGYRARFGNFGKGTYALPDSYRRLRDKEVIRIGQHDWAVVVGNGHSPEHACLWSPELKLLISGDQVLPRISSNVSVHPIEPDADPMSDWLMSLKKIAGNVPDDVLVLPGHNECFHGLHARLAGLAAGQDAAFERLRAALAKGPGRVVDVFPALFRRPITGSDAQLLGLATGESQACLNYLLYRGEISVDVDADGVRWYSLCEPGSEASGS
>NC_007953.1|WP_081435624.1|277154_277634_-|DUF3331-domain-containing-protein
MHGEHTDTWSQTVALLDHGLAHQMMDTLARIAAAHPQKTAWSHHPALTVRVIERTSARTVSVSWCDPLSGYYGYQSWHASLARRRASCVLSGEPISRGDPVYQPSSRPSRPGNAGAMILASRVDAALRVDHQPAGHEVAAGATGRTDGAGCCGLQEGAL
>NC_007953.1|WP_011493441.1|278559_279099_+|Spy/CpxP-family-protein-refolding-chaperone
MNNILRSTAAPALLVLAFTTGSAWAQTPASGAAAPASTAQTGGHAKKHQDFVEQRIDELHAALKITDQQSQQWDAFAQTMRDNAKDADQAFRERASKLGSMTADEAMKSYASITQLHAQNMQKLATAFSALYATLSDDQKKTADVLFRNEHKHGKRHGPQRQHKPAAGGAASAPVPASD
>NC_007953.1|WP_011493442.1|279816_281295_+|mechanosensitive-ion-channel
MPANLLLHMAPSCLAAALNLLLVLLGMPNRLVIRTIGRCAAFALLTAAMLHDGMVPTQAPWHLMLPEVRFVWGALEIAWWLLAASTVAAVVRTYYTLGGRLRERRFMLDVIGTLLYLSAALAIITDVFHIPLKGVLATSGALAIVLGLALQSTLSDLFSGLLINATAPYRVGDSISLDSGTEGQVVEITWRATHLAKANRDLIVVPNSTIAKSRIVNASLPRGAHASTARFQAPSRLRPSDVMHALQLAAETCVGIAARPAPVIVTRSVGLDATDYEVSFFASERWQADEALNSFYDAAHRHLESFHALISPAAQADDASAGTLEYQLIAGIRVFGLLAREERIKLAAALVRRELTPGQIVLEAGQIPDAITIVGYGVLAASPGGDDHSADILRFGPREYLGESGPIAGVPLSVRVVARTYAIVYELPGNAVAALLKEHPEVAHALSARLADREREGRALMQPQAEMPVTRHGLASWIASCIRALHQGHREP
>NC_007953.1|WP_063719384.1|281447_282032_-|cysteine-hydrolase
MTQPLSIDRKRAALLVMDFQKLIIDGYATESEPLLSRTATLLEATRDAGIMVIYVVVGFRPGYPEVSERNMTFSAIRTSGRFATDDASIEVHPAVAPRAAETVVTKHRVSAFAGTDLDMILRANSIDTLLLTGIATSGVVLSTLRHAADADYRVFVVGDCCSDSDAEVHRVLLDKIFPRQAVVSEASTIIAGLA
>NC_007953.1|WP_011493444.1|282402_283107_+|TetR/AcrR-family-transcriptional-regulator
MTTTVARPTLACAEKRSRGRPTRSATIDPDALLRSARQVFARQGFEATSVREIARDAGVDPSLMAHHFGSKEALWTAVVEQIAHQAVPMIEATRKLRMLRVTARGRVERALVILVERVFEEPDIGLFFSTAATEKGERLDVLIERLVRPYHDVFAPLLAAGMDSGELAQNDPEVMYWMLINAVSRTVSYGHVLATFSSLPRRPRDFKRAVLEIARGMLGAGPNANRRYQQKSRM
>NC_007953.1|WP_011493445.1|283173_284715_-|hopanoid-C-3-methylase-HpnR
MKVLTVHPSGLMYTRVFLRLEPLGLETVAAVLREAGHEVRLIDLQVETHRDLHRLIRNWQPDAVCFSGNYLANIPEIVDLAKSVKEKQPRCFVFVGGHSVSFTAADILRHAEGAVDCVLKGEGEASVVALLEAASHGADLLQIPGAVTQHGEGPPPHFVESLDPVRPARDLLRHRRKYFIGTLDPCASIEFARGCPWDCTFCSAWTFYGRSYRARSPEVVAGELASIREPGVFIVDDVAFVHADHGMEIGKAVQRRGIRKKYYLETRGDVLLRNREVFEFWRGLGLQYMFIGMEAIDAEGLKAFRKRINLDRNFEALAFARSLGITVAINLIADPDWDHDRFEAVRQWCLEIPEIVNISVNTPYPGTEIWLREQRRLTSLDYRLYDIQHAVLPTRLPLPEFYAELVRTQQVLNRKHLGWTALRGAAGHACHLLLRGQTNFVRMLWRFNSVFNPQLQLNDHAREVHYTMSPPPGITEQRIDVKALYVHGPIGRKGRRIDDATENFVEQTRMGAG
>NC_007953.1|WP_011493446.1|284805_286098_-|NAD(P)/FAD-dependent-oxidoreductase
MTQPVRIVIVGGGIAGLLLATRLGNRLGRRGEAHVTLVDRSPTHIWKPMLHTIAAGTTDVHQQQVFYLTHARAHGFTYRPGEMCGIDRDTQQIQLAALAMPNGEVVMGPGTLGYDILVLSTGSRANDFGTPGVPEHCHFIDSQPQAEAFNEAIRSRIVRSVVENEPLRVAIVGAGATGVELAAELSHLLDVASSYGDASIRARLHLGLYESAPRVLTAFPPDISASSEALLRRLGFEVHTRTRVTEARAQRLRLNDGSEVAADLMVWAAGVKAPDFLGKLPGIEASHANQLFVRPTLQTTHDDHIFALGDCASLTPPGNERPLPPTAQVATQQAEHLAKHLPRWLNGEPLPEFTFRDFGALVSLSDYNAFGTLGKFGFFKGGFIRGRFAQISHAMLYRRHQQALHGFGKASLLWTAERINALVQPKIRLK
>NC_007953.1|WP_148311803.1|286641_286980_+|hypothetical-protein
MADRELLRREETVPGEQQAIAAKSSACFPGGLQPVKQGDYRMRCAGPDSRGSGAASVDEAPRTHIWLSPLEDLAFEKRQPPVWKTIGDCAGFAAGRSRSARQASATQPVMLV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007953_1	1.1\|273808\|26\|NC_007953\|CRISPRCasFinder	273808-273833	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258716-1258741	2	0.923
NC_007953_1	1.1\|273808\|26\|NC_007953\|CRISPRCasFinder	273808-273833	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263385-1263410	2	0.923
NC_007953_1	1.1\|273808\|26\|NC_007953\|CRISPRCasFinder	273808-273833	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258763-1258788	3	0.885
NC_007953_1	1.1\|273808\|26\|NC_007953\|CRISPRCasFinder	273808-273833	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263432-1263457	3	0.885

1. spacer 1.1|273808|26|NC_007953|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 2, identity: 0.923

ctttgcatgggactggaataagcgct	CRISPR spacer
ctttgcatgggaccggactaagcgct	Protospacer
*************.*** ********

2. spacer 1.1|273808|26|NC_007953|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 2, identity: 0.923

ctttgcatgggactggaataagcgct	CRISPR spacer
ctttgcatgggaccggactaagcgct	Protospacer
*************.*** ********

3. spacer 1.1|273808|26|NC_007953|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 3, identity: 0.885

ctttgcatgggactggaataagcgct	CRISPR spacer
ccttgcatgggaccggactaagcgct	Protospacer
*.***********.*** ********

4. spacer 1.1|273808|26|NC_007953|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 3, identity: 0.885

ctttgcatgggactggaataagcgct	CRISPR spacer
ccttgcatgggaccggactaagcgct	Protospacer
*.***********.*** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

490459 : 550598

Emiliania_huxleyi_virus(12.5%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011493632.1\|490459_490858_-\|transposase	transposase	NA	NA	NA	NA
WP_011493633.1\|491786_492236_+	hypothetical protein	NA	NA	NA	NA
WP_011493634.1\|492245_492950_+	P-loop NTPase	NA	NA	NA	NA
WP_011493635.1\|492942_493665_+	hypothetical protein	NA	NA	NA	NA
WP_049782505.1\|493777_493984_-	hypothetical protein	NA	NA	NA	NA
WP_011493636.1\|494179_494425_-	hypothetical protein	NA	NA	NA	NA
WP_011493637.1\|494551_496816_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	5.6e-25	34.4
WP_011493638.1\|496939_497773_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	6.0e-41	35.7
WP_040123541.1\|499021_499333_-	cupin	NA	NA	NA	NA
WP_011493642.1\|499439_500234_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011493643.1\|500345_501806_+	anion permease	NA	NA	NA	NA
WP_011493644.1\|501943_502504_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011493645.1\|502699_503698_+\|transposase	IS110-like element ISBfun2 family transposase	NA	NA	NA	NA
WP_148223098.1\|503775_504303_-	hypothetical protein	NA	NA	NA	NA
WP_148223099.1\|504636_504882_-	hypothetical protein	NA	NA	NA	NA
WP_011493648.1\|504938_505964_+\|transposase	IS110-like element ISBfun1 family transposase	NA	NA	NA	NA
WP_011493649.1\|506299_507106_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011493650.1\|507568_508720_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_148311802.1\|509291_509774_-	hypothetical protein	NA	NA	NA	NA
WP_040123539.1\|509818_510181_+	hypothetical protein	NA	NA	NA	NA
WP_011493654.1\|512437_513619_+	porin	NA	NA	NA	NA
WP_011493655.1\|513680_514931_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011493656.1\|514927_515788_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011493657.1\|515784_516729_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011493658.1\|516725_517520_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	5.1e-13	26.9
WP_011493659.1\|517516_518230_+	ABC transporter ATP-binding protein	M1HRF1	Paramecium_bursaria_Chlorella_virus	4.0e-09	28.9
WP_011493660.1\|518850_519813_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_040123536.1\|519969_520881_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011493662.1\|520894_521296_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011493663.1\|521292_521673_+	AraC family ligand binding domain-containing protein	NA	NA	NA	NA
WP_148223100.1\|521669_522437_+	aldolase	NA	NA	NA	NA
WP_011493665.1\|522439_524122_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	5.0e-26	27.4
WP_011493666.1\|524118_524673_+	SRPBCC family protein	NA	NA	NA	NA
WP_011493667.1\|524734_525166_+	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA
WP_011493668.1\|525180_526350_+	lipid-transfer protein	NA	NA	NA	NA
WP_011493669.1\|526387_527368_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA
WP_011493670.1\|527369_528533_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_011493671.1\|528574_529777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011493672.1\|529973_530774_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_011493673.1\|530778_532350_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.2e-34	26.1
WP_011493674.1\|532506_533040_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_011493675.1\|533036_533594_+	DUF2889 domain-containing protein	NA	NA	NA	NA
WP_011493676.1\|534127_534847_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011493677.1\|535105_539140_+	PAS domain S-box protein	Q8QKV4	Ectocarpus_siliculosus_virus	2.6e-12	26.1
WP_011493679.1\|539898_541281_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011493680.1\|541302_542472_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_011493681.1\|542491_542854_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_011493682.1\|542864_544316_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA
WP_011493683.1\|544347_545382_+	zinc-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.7e-32	28.3
WP_148223101.1\|545399_547250_+	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_011493685.1\|547246_547987_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_011493686.1\|547983_548565_+	NADP oxidoreductase	NA	NA	NA	NA
WP_011493687.1\|548592_550107_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA
WP_011493688.1\|550103_550598_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA

DBSCAN-SWA_2

805077 : 856214

Trichoplusia_ni_ascovirus(27.27%)

integrase,transposase

attL 830075:830094|attR 858485:858504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007175956.1\|805077_806514_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_007175955.1\|806510_807368_+	ATP-binding protein	NA	NA	NA	NA
WP_007175954.1\|807369_807585_+	hypothetical protein	NA	NA	NA	NA
WP_158340959.1\|807711_807879_+	hypothetical protein	NA	NA	NA	NA
WP_011493916.1\|807875_809486_+	acyl--CoA ligase	A0A1V0SBX8	Catovirus	2.3e-12	27.7
WP_011493917.1\|809482_810670_+	CoA transferase	NA	NA	NA	NA
WP_011493918.1\|810666_811437_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-15	28.0
WP_011493919.1\|811514_812924_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_148223107.1\|813213_813363_+	CoA transferase	NA	NA	NA	NA
WP_011493921.1\|813963_815118_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_011493922.1\|815149_816343_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_011493923.1\|816360_817233_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_011493925.1\|818575_819631_-	porin	NA	NA	NA	NA
WP_148223108.1\|819774_820611_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-12	27.1
WP_148311800.1\|820492_821131_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-25	44.4
WP_011493927.1\|822210_822492_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_011493928.1\|823032_823689_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_011493930.1\|826337_826655_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_148223109.1\|826954_827404_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011493932.1\|827680_829105_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011493933.1\|829143_830154_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
830075:830094	attL	NA	NA	NA	NA
WP_011493934.1\|830159_830990_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-29	35.1
WP_040123671.1\|831004_831883_+	ABC transporter permease	NA	NA	NA	NA
WP_085953667.1\|831905_833213_+	cytosine deaminase	NA	NA	NA	NA
WP_011493937.1\|833293_834256_+	oxidoreductase	NA	NA	NA	NA
WP_011493938.1\|834287_835379_+	porin	NA	NA	NA	NA
WP_095211919.1\|836848_838388_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.4e-43	34.8
WP_049782447.1\|839165_839897_+	hypothetical protein	NA	NA	NA	NA
WP_011493942.1\|839893_840496_+	hypothetical protein	NA	NA	NA	NA
WP_011493943.1\|840492_841266_-	hypothetical protein	NA	NA	NA	NA
WP_011493944.1\|841738_842470_+	hypothetical protein	NA	NA	NA	NA
WP_011493945.1\|842886_843513_+\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	3.7e-11	29.3
WP_011493947.1\|843950_844706_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-11	28.6
WP_011493948.1\|844749_845523_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.4e-06	29.8
WP_011493949.1\|845648_846239_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_148223146.1\|847994_849341_+	hypothetical protein	NA	NA	NA	NA
WP_040123500.1\|849696_850428_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_011493954.1\|850522_850873_+	VOC family protein	NA	NA	NA	NA
WP_011493955.1\|851325_852495_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011493956.1\|852516_853392_-\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	1.2e-26	29.5
WP_011493957.1\|853593_854493_-	tetrahydrodipicolinate N-succinyltransferase	NA	NA	NA	NA
WP_011493958.1\|854640_854937_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011493960.1\|855413_856214_+\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	6.0e-22	28.6
858485:858504	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1213914 : 1259907

Micromonas_sp._RCC1109_virus(37.5%)

integrase,transposase

attL 1235573:1235632|attR 1256849:1260052

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049782490.1\|1213914_1214427_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011494268.1\|1214643_1215291_+	response regulator transcription factor	NA	NA	NA	NA
WP_011494269.1\|1215354_1215549_+	hypothetical protein	NA	NA	NA	NA
WP_011494270.1\|1215594_1216881_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_040123620.1\|1216902_1217655_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-35	43.4
WP_011494272.1\|1217663_1218623_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_011494273.1\|1218684_1219599_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_040123619.1\|1219701_1221390_-	thiamine pyrophosphate-binding protein	E5EQ70	Micromonas_sp._RCC1109_virus	1.1e-36	25.3
WP_040123618.1\|1221440_1222928_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011494277.1\|1223296_1224082_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_011494278.1\|1224078_1225422_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_011494279.1\|1225414_1226032_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_011494280.1\|1226012_1226774_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_011494281.1\|1226770_1227874_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_081435653.1\|1227895_1229365_-	EAL domain-containing protein	NA	NA	NA	NA
WP_148223153.1\|1229452_1230244_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011494284.1\|1230594_1232277_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011494285.1\|1232279_1233188_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_009288528.1\|1233184_1234402_+	TniQ family protein	NA	NA	NA	NA
1235573:1235632	attL	NA	NA	NA	NA
WP_003158660.1\|1235715_1238631_-\|transposase	Tn3-like element IS1071 family transposase	A0A1B0V7H9	Salmonella_phage	1.4e-52	24.0
WP_011494288.1\|1239540_1240584_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011494289.1\|1240816_1242019_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011494290.1\|1242042_1242384_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.7e-16	50.0
WP_011494291.1\|1242373_1242694_+	addiction module antidote protein	NA	NA	NA	NA
WP_139174265.1\|1242764_1242923_-	abortive infection family protein	NA	NA	NA	NA
WP_011494292.1\|1243197_1243755_-	OmpW family protein	NA	NA	NA	NA
WP_167540902.1\|1243670_1243847_-	hypothetical protein	NA	NA	NA	NA
WP_011494293.1\|1243993_1244854_-	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	A0A286MQ79	Mycobacterium_phage	9.4e-05	30.1
WP_003450974.1\|1244924_1245965_-	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	3.8e-45	35.4
WP_003450975.1\|1245984_1246899_-	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	7.1e-35	36.6
WP_003450985.1\|1246920_1247703_-	2-oxopent-4-enoate hydratase	NA	NA	NA	NA
WP_003450988.1\|1247785_1248397_-	glutathione transferase GstA	NA	NA	NA	NA
WP_011494295.1\|1248428_1249325_-	biphenyl-2,3-diol 1,2-dioxygenase	NA	NA	NA	NA
WP_011494296.1\|1249346_1250180_-	cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase	NA	NA	NA	NA
WP_003450997.1\|1250226_1251453_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011494297.1\|1251449_1251779_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_003451002.1\|1251853_1252273_-	BphX family protein	NA	NA	NA	NA
WP_040123616.1\|1252310_1252877_-	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_011494299.1\|1252994_1254374_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_011494300.1\|1254464_1255202_-	FCD domain-containing protein	NA	NA	NA	NA
WP_011494301.1\|1255650_1256247_+\|transposase	transposase	NA	NA	NA	NA
WP_003158660.1\|1256991_1259907_-\|transposase	Tn3-like element IS1071 family transposase	A0A1B0V7H9	Salmonella_phage	1.4e-52	24.0
1256849:1260052	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_007951

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007951_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007951_1

1087633-1087740

Orphan

Consensus_repeat	Method
TGGGGGGCGCTTCTGGAACGCCGGGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007951_1

>merge|NC_007951|1|1087633-1087740|CRISPRCasFinder
TGGGGGGCGCTTCTGGAACGCCGGGCCGCCCCAAGTTTTCTCGCCCCCCTCGGGGGGGGCTGGCGCGTAGCGACAGATGGGGGGCGCTTCTGGAACGCCGGGCCGCCC

>NC_007951|1|1|1087633-1087740|CRISPRCasFinder
TGGGGGGCGCTTCTGGAACGCCGGGCCGCCC	CAAGTTTTCTCGCCCCCCTCGGGGGGGGCTGGCGCGTAGCGACAGA
TGGGGGGCGCTTCTGGAACGCCGGGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007951.1\|WP_011487256.1\|1072738_1073572_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NC_007951.1\|WP_011487267.1\|1096340_1097594_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_007951.1\|WP_011487264.1\|1092496_1093423_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226304
NC_007951.1\|WP_007175909.1\|1095474_1096302_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_007951.1\|WP_011487263.1\|1091728_1092460_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NC_007951.1\|WP_038456767.1\|1086176_1087382_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_007951.1\|WP_007175907.1\|1097631_1098678_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NC_007951.1\|WP_011487257.1\|1075221_1077057_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_007951.1\|WP_007175917.1\|1087900_1088434_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NC_007951.1\|WP_011487265.1\|1093503_1094346_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NC_007951.1\|WP_011487262.1\|1089440_1091726_+\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NC_007951.1\|WP_011487258.1\|1077085_1081393_+\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NC_007951.1\|WP_007175923.1\|1074639_1074825_-\|DUF3460-family-protein	unknown	unknown	gnl\|CDD\|378768
NC_007951.1\|WP_007175926.1\|1072300_1072687_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NC_007951.1\|WP_007175924.1\|1073759_1074635_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NC_007951.1\|WP_011487266.1\|1094496_1095405_+\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NC_007951.1\|WP_011487260.1\|1085026_1086115_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NC_007951.1\|WP_007175915.1\|1088783_1089353_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NC_007951.1\|WP_007175919.1\|1084024_1084678_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NC_007951.1\|WP_011487259.1\|1081528_1083661_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655

Protein	Function_ID	Function_description	E-value
NC_007951.1\|WP_011487256.1\|1072738_1073572_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.22115e-154
NC_007951.1\|WP_011487267.1\|1096340_1097594_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	8.75652e-81
NC_007951.1\|WP_011487264.1\|1092496_1093423_-\|hypothetical-protein	gnl\|CDD\|226304	COG3781, COG3781, Predicted membrane protein [Function unknown].	3.28526e-146
NC_007951.1\|WP_007175909.1\|1095474_1096302_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.85351e-76
NC_007951.1\|WP_011487263.1\|1091728_1092460_+\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	4.11717e-05
NC_007951.1\|WP_038456767.1\|1086176_1087382_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.51506e-54
NC_007951.1\|WP_007175907.1\|1097631_1098678_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.8645e-74
NC_007951.1\|WP_011487257.1\|1075221_1077057_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.12591e-101
NC_007951.1\|WP_007175917.1\|1087900_1088434_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	6.51673e-31
NC_007951.1\|WP_011487265.1\|1093503_1094346_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	1.25966e-28
NC_007951.1\|WP_011487262.1\|1089440_1091726_+\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NC_007951.1\|WP_011487258.1\|1077085_1081393_+\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	1.09372e-113
NC_007951.1\|WP_007175923.1\|1074639_1074825_-\|DUF3460-family-protein	gnl\|CDD\|378768	pfam11943, DUF3460, Protein of unknown function (DUF3460). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.	5.67357e-22
NC_007951.1\|WP_007175926.1\|1072300_1072687_-\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	8.97037e-77
NC_007951.1\|WP_007175924.1\|1073759_1074635_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	4.28673e-68
NC_007951.1\|WP_011487266.1\|1094496_1095405_+\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.97604e-104
NC_007951.1\|WP_011487260.1\|1085026_1086115_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	1.14499e-159
NC_007951.1\|WP_007175915.1\|1088783_1089353_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	4.19897e-113
NC_007951.1\|WP_007175919.1\|1084024_1084678_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	5.36792e-47
NC_007951.1\|WP_011487259.1\|1081528_1083661_-\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0

>NC_007951.1|WP_038456767.1|1086176_1087382_-|IS110-family-transposase
MQENQQHSSVDVFVGVDVGKGHHHAVALDRTGKRLYNKALPNDEAKLRALITELKTHGQLLFVVDQPATIGALPVAVARDEGVLVAYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARSMPHTLRSLRLADEPLAELTMLCGFDDDLAAQITQTSNRIRGLLTQIHPALERVLGPRLDHPAVLDLLERYPSPAELAATSEKTLANRLTKLAPRMGKSLATEIVQALSEQAVIVPGTQAATIVMPRLAQQLASLRKQRDEVASEVERLVHAHPLWPVLTSMPGVGVRTAARLLTEVAHKAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKVLKRALFLSAFAALRDPVSRDYYARKVQQGKRHNQALIALARRRCDVLFAMLRDGAFYQPKSAPNA
>NC_007951.1|WP_011487260.1|1085026_1086115_+|iron-sulfur-cluster-carrier-protein-ApbC
MSIDRALVDAALAAVADPNTGLPYAAAKNIKNVAVQDDTVSVEVVLGYPAMRQFDAIRAQFSDALRAVPGVADARVQVSQQIAAHTVQRGVKLLPNVKNIVAVASGKGGVGKSTTAVNLALALASEGASVGILDADIYGPSLPMMLGIVGRPESPDEKSMNPMTGHGLQANSIGFLIEQDNPMVWRGPMATSALEQLLRQTNWHDLDYLIVDMPPGTGDIQLTLSQRVPVTGAVIVTTPQDIALLDAKKGLKMFEKVGIPILGIVENMGTHICSNCGHEEHIFGAGGGERMGKEYGVDVLGSLPLDIAIREQADSGKPTVVADPEGRIAEIYRSIARKVAIHIAERARDMTSKFPNIVVQNT
>NC_007951.1|WP_007175919.1|1084024_1084678_-|OmpA-family-protein
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGITGYNWQAIHNKLSGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSAQGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ
>NC_007951.1|WP_011487259.1|1081528_1083661_-|methionine--tRNA-ligase
MSAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYVGADDTHGTPVMLRAEKEGLTPKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSENVYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKCGAKDQYGDSCEVCGSTYLPTELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGEAKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGSKAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSVIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRFDGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQAKDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTRPINAYKHLMTRVDPKQIEALLAANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK
>NC_007951.1|WP_011487258.1|1077085_1081393_+|translocation/assembly-module-TamB-domain-containing-protein
MTTDVSAQPPAQPPGAHPPGQQPPPEGPPPRRRLGRLLLKTLAWTVAVVVLLLALAAGLLYGALTTERGTAYAWQAAVKLLGGKLSGTLESGALANGLQLRQVRWRSLDGSGTDIQIDRVAGRWALARQPWRFTVDYLHVGTVDARIGASSSGSGPMKLPQDLRLPIQLDIRDVQVDKLLLHQGASTTEFSRFVFHGRSDGRHHEAAIERLDTPFGAVTAAARLDGVRPFPLSGDIGYSGKVNNEAVQVGGHLSGSLENLIAELDASGMKLAGHARVEAEPFGDVPLRRATLTFDHINPQAFSPGAPQADLAVRAELQPVGQGVAGADAAGASAADTASAAQHAIAASGGHSAQPHASGKSTAGFAVAGHVSIVNARPGAIDQNLLPLIDAKADVRLDAETQRISNLNVRLVKSATLTGGGALSGKHGQFDLQVAGLDLNALQATVRPTQLSGPIGVRLNDDVQSVTLDLVDPKAALRAQGKITFDPARMSFNDVRITSGKGRIDLSGALKHDANSTYNLKAQLTDFDPLTLASQMPSRTPVAGPAPAASTARKSGTAQAAAQAGSTAGAKSAAPADKAAAAVKNTAKAAVRAEVVQRKTPAPKRGAPPARKIEARVNGTLTAAGMLGPVFTTRADFKLGPSVYDGLPLTGSGTVQLAGSRILPSRANLSVAGNQVDLQGSFGARGDRLKFRVDAPELERLGFGLAGLVAADGDITGSFAHPNVVLNYKADSVVFSSNRIGHAEGHAELRDGANGALVFTTDARNVSTGGVDLSTLTARLSGTRANHTLEAAATGKLQDRPLDLTLAANGKLTEAREGTRWDGTVTRLQNRGTPSFNLESPLAVSAGPQRLTLGATKLTLEGAVLSLKTFAFDHGKIQSAGSLTDISAVRLQDLRRQITGEPPIVKTDLVFDGDWDFTLGSTASGHIQLKRRSGDVTVEIGRGLASLGISDITARAEFSGGNRLNATVHAQASRIGVIDADAHTTLVMRDGFLTVSEEGALTGNVNANVPSLKTTGGLFGPSYLLDGHLALKLALGGTVAKPNLTGSLLGDGISATMVDQGVQLKDGVVRIALSQNLVDFQQVEFHGASGTLRATGRVRLDGAQPDLTASIVADKLELFAAPDRNLSLSGSATVANGGTLGGMEINGKFVVDHALFDMPEQSAPKLGDDVVVVRPDGSVAGERPRPVAGTNRPIGPFAPRANIDINLGNSFRFRGQGADLGLSGTITAMSAPNLPLRAVGNVLVTPGSTYTAFGRKLNIENGFFTFNGPVANPGINILAMRRNQQVEAGVQVTGTVQFPTAKLVSEPNVPDNEKLSWLLFGHGTDQGNNLGQQSTMTTALALLGSASGKRIAQTFGLDEFSIGRSEVGLTDPQVVMVSKAINEWLVIGYEQGLQSASNAIKATVNLTRYWSVAAYGGTFDGLDLLYTRRFDRIRW
>NC_007951.1|WP_011487257.1|1075221_1077057_+|outer-membrane-protein-assembly-factor
MAGCAIDKPRLRRGKAGFGRGPVAPMRHWLRAWLAFGLVMLTLAAGNAHAAKAAASYKVDIEATPRSLRKLLEAHLDIARFAKRPDISDDQFEFLITATPQQVRDLASTQGYFTPVVRTDVRTIDDTKRVTVSVDSGPQTVISSISLSFRGPVLTEDPAQENAARFAFSLHEGDPFSQGGWDDAKNASLKALQARRYLGAKIYHSEARVDPRTHEAKLSVTYESGPTFTMGKLDVSGTLRYPERIVENVNPISAGDIYDVQRVAELQRQLQNTPYYASVAIDVDSDPAKPVETPMHVKVSEYPYNSIRGGVGYSTDNGPLVQGAYSYLDTFGKAWPFTVEGRVDQIQQYGQIELSMPPGRRAWTNSMLASYTTTDVSDTRIYSIRGGVQRARTSQFIDYNYALLFYQDRLDQNAAAPTTSRALVPSWSWTRRNTDDPLFPRTGNLIHVEAGFAVKGVLTDQTFIRGYARGQQYLPIGKEDLVLIRAELGGVFTSGPSSGIPASLLFRAGGSNSVRGYGYQSIGNNVDGSVLPTKYLVTASAEYQHWFNHDWGAAAFFDVGTATDTWGEKVFYPGVGVGARWRSPVGPVNVDVAYGIRNRSVRPYLTLGIAF
>NC_007951.1|WP_007175923.1|1074639_1074825_-|DUF3460-family-protein
MYQSDITQFLNQLKQQKPNLEAEQRRGRALLWDKQPIDLEERAEQKASRVEQTPYSYYQNF
>NC_007951.1|WP_007175924.1|1073759_1074635_-|segregation/condensation-protein-A
MSHADEAHGAPPAPADAALAAPATDSTPDTVDGIAFARLYGEPLFKLPTDLYIPPDALEVFLETFEGPLDLLLYLIRKQNFNVLDIPMADVTVQYLGYVDQLRQTNLELASEYLLMAAMLIEIKSRMLLPVKKADSGDEAEDPRAELVRRLLEYEQMKLAAQRIDQLPQLGRDFLRAEVYIEQSITPRFPDVNSEDLRAAWADVIKRAKLVQHHRISREELSVREHMSSILRQLQNARFIEFSDLFDTSKGVPVVVVNFIAVLELCRESLVEITQAEPFAPIYVRLAYLPA
>NC_007951.1|WP_011487256.1|1072738_1073572_-|pantoate--beta-alanine-ligase
MKVISSIHELRDQLRGQNRTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTMEADIEKLQKENVYVLFAPTEKDLYPEPQEYRVHPPHDLGDILEGEFRPGFFQGVCTVVMKLMSCVQPRVAVFGKKDYQQLMIVRRMCNQFALPTDIIAAETVRDADGLALSSRNRYLQAAERAEAPRLAAELNQVREAVLGGERDFAKIERAAMAALAARGWQPDYIAVRKRSNLLPPGPEDANAELVVLAAARLGATRLIDNLEI
>NC_007951.1|WP_007175926.1|1072300_1072687_-|aspartate-1-decarboxylase
MQRNMLKSKIHRVAVTHCELHYEGSCAIDEDLLEAANIVENERIDIWNINNGERFSTYAIKGERGSGMISLNGSAARRAQLGDLVIIAAFAVVDEAELKAGWKPDLVFVDDNNRIKGSRDHVPTQNWT
>NC_007951.1|WP_007175917.1|1087900_1088434_+|superoxide-dismutase-family-protein
MGKRIDGQAVHAFIVLAATSVLLCGCSAFLRPQEKRADAQLLPTVGNQARGLVTFIERSDGVQVTYNLAGMPPNSDHALQVHERGDCNAADGSSAGQVFSPAAERLKTGARVEGDLGNIHADANGVATGFIVAPDVSLDGIRSVLQRAVLLHHDATDPYAYPQHGAGPALACGLIRQ
>NC_007951.1|WP_007175915.1|1088783_1089353_+|dCTP-deaminase
MTIKSDKWIRRMAESHKMIEPFAPDQVRVSEDGRKIVSYGTSSYGYDIRCADEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTVCLGKSTYARCGIIVNVTPFEPEWEGHVTLEFSNTTPLPAKIYANEGVAQVLFFESDEICETSYADRGGKYQGQHGVTLPRT
>NC_007951.1|WP_011487262.1|1089440_1091726_+|arginine/lysine/ornithine-decarboxylase
MKFRFPVVIIDEDFRSENISGSGIRALAEAIEKEGAEVLGLTSYGDLTSFAQQSSRASCFILSIDDDELLPYVDNVVVEGETPELAAAIVALRAFVTEVRRRNADIPIFLYGETRTSRHLPNDILRELHGFIHMFEDTPEFVARHIIRETKVYLDSLAPPFFKELVQYAEEGSYSWHCPGHSGGVAFLKSPLGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFSADHVFFVTNGTSTSNKIVWHGTVAPGDIVLVDRNCHKSILHAITMTGAIPVFLTPTRNNFGIIGPIPRSEFEPENIKKKILANPFAREALAKNPDLKPRILTITQSTYDGVIYNVEMIKEMLGDWLDTLHFDEAWLPHAEFHEFYQDMHAIGAGRPRIGAMVFATHSTHKLLAGISQASQIVVQDSKNSRFDKHRFNEAYLMHTSTSPQYAIIASCDVAAAMMEAPGGTALVEESIAEALDFRRAMSKVDAEYGDDWFFKVWGPDQFAEEGIGSREDWMLRPNDPWHGFGPLADGFNMLDPIKATIVTPGLDMDGGFGESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSMVTELQQFKDDYDNNQPLWRVLPEFVSHHPMYERVGLRDLCEQIHSVYRANDIARLTTEMYLSSMEPAMKPSDAFAKLAHREIDRVPIDELEGRVTSILLTPYPPGIPLLIPGERFNRTIVNYLRFAREFNERFPGFHTDIHGLVGETINGRIEYFVDCVRA
>NC_007951.1|WP_011487263.1|1091728_1092460_+|DUF1311-domain-containing-protein
MRRAKSPLWASGPQRAFCVLALAAAVVFGAASLPAHAEVAAADPIDASMRACLARSDMSSTAGQVQCMDNARIGWRTALDNAWQQLQQKVPPARRKQWEKSQASWQASRDAEKPLLAAVFATTRGSMYVLAEADMQLQPVRDRALALRSAVAKASAGGDPPRRVRACSADAQCEHAMFDLNRYYHRLQSKMPVRTRATLTRAQKAWTAYLNATTPVVDERGRIDIIGARVATLKRLSETVGNS
>NC_007951.1|WP_011487264.1|1092496_1093423_-|hypothetical-protein
MIIRPHLHWFRMLLAWRGSVLPQLLPRLFLIFCISIVAVAAHDHLLPISLNLNTTAPFSLIGIALAVFLGFRNNASYDRWWEARKLWGQLLNESRSLTRQVLTLPVRPLPEEDVKEFFTVLGALPHALRHQLRRSDPREDLAARLPQALFERVMASRYKPAALMLYLGEWVQRHARAGEIDPMAVIAFDRNLNGISDVIGGCERIASTPLPFAYSVMIHRTVYFFCASLPFGLVDSIGIFTPVFAVFVAYTFMAHEAIASQIEEPFGTDDNDLALHMMSVVIEDAMRDLLGEPALPLPSPEAEGYILN
>NC_007951.1|WP_011487265.1|1093503_1094346_-|EamA-family-transporter
MLSYTGGLVLLAALLHASWNAMLHGNRDRFLSMTWMSIAIATVSSFVVLFTPWPAGAAWPYIVVSGLLHIVYNMTLVRAYRRSDLAQAYPIARGSSPLLVTLGAALFAHEAIGPLHALGVAMISGGIIAIALQGGRVSRAGALAALTTGATIALYTVIDGIGVRVSEGRSLTYTAWMFLFYWLMPLLFVAKRGLAALWRPVRAAPMAVGSSLAGGLVSIAAYGIVIWAMQSGAMGAVSALRETSVVFAVLIGRVFLREAVSAKRWLACVIVAAGAVCLGV
>NC_007951.1|WP_011487266.1|1094496_1095405_+|transcriptional-regulator-GcvA
MKRVLPPLNALRAFEAAGRLGSFKEAAAELHVTHGAVSQQVRLLEEWLGAPLFERHNRRVVLTAAAKAYLGEIGPLFEQLSQATARYGFPETVSRTLSVNAPATFTLRWLVPRLAKFRAGHPDVDVKVETSNESAESLKDVYDIVIRGGPDTFYGYSMRPFLSEERLPVCSPALLQRQPLRTPDDLRQHTLLHTSSLPRLWPDWLASAKIPALRPAAALTFDHFYLTLQAAIDGIGIAMGPTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPDGKSADDLVALFRAWLEREGMRLPAETNP
>NC_007951.1|WP_007175909.1|1095474_1096302_-|ABC-transporter-permease
MQEQRNKVLTERIATRWVRLHTAVVLFFLIAPILAIIPLSFNSGSYFSYPMQGFSFRWYEQALTSADWQRSLLNSIGIGAASTLIATCLGTLAALGLSRAQFPLRSLIMPIIISPMIVPIVVVAAGFYLIFAPLGLVNSYPGVVLAHAALGTPFVVITVTASLLSFDQSLLRAASGLGAAPWVTFRRVTLPLIMPAVATGSVFAFATSFDEVIVILFIGGPDQTTVPRQMWSGIRDSIDPSILAVATMLIVFAVLLFASINWLRGRAAAASSALT
>NC_007951.1|WP_011487267.1|1096340_1097594_-|ABC-transporter-permease
MPAPARATAVGSPTRADGGASFQKARRRASVRALLLALPLIVFLVSTFIAPIALLLARSVQNHEMSNGMPALTRALDAWDGRGVPDEHMFALLAAGLREAQQSGQLGTVARRLNFDQAEFRSLLMRTARQLPADAPPAWKPALIELDERWNSPEIWRLLKRAAASPTPDYLLAAVDAQVTPQGSVAFVPDNASIYRQAFARTISISATVTLLCLVLGYPVAWLLANLPAKSSNRLMLFVIVPFWTSLLVRTTAWYVLLQPGGVINSLLTGLGLATHPLPLIFNRTGVLIGMTHVLLPYMILAIYSVMKGVSPVYVRAAQSLGAHPFTAFVRVYIPQTLPGVGAGCFLVFVLALGYYITPALLGGAGDEMISQLIAIQTNTQLNWGLAGALSAYLVIFTAIFYFLFNRIVGIDRLRFG
>NC_007951.1|WP_007175907.1|1097631_1098678_-|ABC-transporter-substrate-binding-protein
MRNNLKAQCAALAVLAFTAAATQAAETLSVVTFGGAYEAAAKKAYFEPFTQATGIGFSTESYDGGLAKLSAMEQAKNTTWDLIDLETNDAITACDEGLLQKFDKKSLGKTSDFIPGSISDCAVASMVWSTVYAYDASKLKTAPTTVNDFFDLQKFPGKRGLRKSPKVSMEWALIADGVDPKDVYKVLGTPAGVDRAFRKLDTIKKSIVWWESGAQAPQLLADGAVVMTQAYNGRIDDAAKKDNKPFKAVWDAQVYDFDWWGVPTGAKHADAAAKFIVSASQPKAYADLTKYIAYAPPRKDAIALIDKQRLADLPTSPQNFKRALQINATFWADNADQINKRFQVWLTQ

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Crispr_ID: NC_007951_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007951_2

2394432-2394609

Orphan

Consensus_repeat	Method
CTTCGTACCCGAGCGGGTACGAAAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_007951_2

>merge|NC_007951|2|2394432-2394609|CRISPRCasFinder
CTCCGTATCCGCTCTGGTACGTGAAGGCCGCCAGTCGGCCATTTTTCCGTTCTTCGTACCCGAGCGGGTACGAAATGAACTGAATAGACCTCTACCATGCCACTTCGTACCCGAGCGGGTACGAGATCAAGTCTCCATCCCGGTCACGTGGCATAATGTTCCCGAGCGGGTACGAACG

>NC_007951|2|2|2394432-2394609|CRISPRCasFinder
CTCCGTATCCGCTCTGGTACGTGAA	GGCCGCCAGTCGGCCATTTTTCCGTT
CTTCGTACCCGAGCGGGTACGAAAT	GAACTGAATAGACCTCTACCATGCCA
CTTCGTACCCGAGCGGGTACGAGAT	CAAGTCTCCATCCCGGTCACGTGGCA
TAATGTTCCCGAGCGGGTACGAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007951.1\|WP_011488317.1\|2400456_2402145_+\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235908
NC_007951.1\|WP_011488319.1\|2404537_2405716_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180843
NC_007951.1\|WP_011488306.1\|2383169_2384792_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_007951.1\|WP_011488309.1\|2388365_2389907_-\|peptidase-M35	unknown	unknown	gnl\|CDD\|199913
NC_007951.1\|WP_011488304.1\|2381148_2381490_-\|hypothetical-protein	unknown	unknown	unknown
NC_007951.1\|WP_011488313.1\|2396344_2397124_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NC_007951.1\|WP_011488318.1\|2402314_2404399_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|183293
NC_007951.1\|WP_011488312.1\|2394902_2396195_+\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|341494
NC_007951.1\|WP_011488308.1\|2386800_2388099_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NC_007951.1\|WP_011488314.1\|2397135_2397456_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601
NC_007951.1\|WP_007181992.1\|2398150_2398573_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_007951.1\|WP_007182003.1\|2382311_2382998_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226647
NC_007951.1\|WP_011488310.1\|2390231_2394317_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NC_007951.1\|WP_011488303.1\|2379122_2381060_+\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182731
NC_007951.1\|WP_171914662.1\|2381608_2382283_-\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NC_007951.1\|WP_011488307.1\|2385026_2386628_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|182554
NC_007951.1\|WP_038458856.1\|2394655_2394913_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NC_007951.1\|WP_007585907.1\|2378480_2378753_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NC_007951.1\|WP_011488316.1\|2398702_2400259_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NC_007951.1\|WP_011488315.1\|2397457_2397988_-\|septation-protein-A	unknown	unknown	gnl\|CDD\|234704

Protein	Function_ID	Function_description	E-value
NC_007951.1\|WP_011488317.1\|2400456_2402145_+\|fatty-acid--CoA-ligase	gnl\|CDD\|235908	PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.	0
NC_007951.1\|WP_011488319.1\|2404537_2405716_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180843	PRK07108, PRK07108, acetyl-CoA C-acyltransferase.	0
NC_007951.1\|WP_011488306.1\|2383169_2384792_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_007951.1\|WP_011488309.1\|2388365_2389907_-\|peptidase-M35	gnl\|CDD\|199913	cd11007, M35_like_1, Peptidase M35-like domain of uncharacterized proteins. This family contains proteins similar to the M35 Zn2+-metallopeptidases, also known as the deuterolysin family, presumably these are bacterial metalloendopeptidases that have yet to be characterized. Typically, members of this family of extracellular peptidases contain a unique zinc-binding motif (the aspzincin motif), defined by the HExxH + D motif where an aspartic acid is the third zinc ligand; however, members of this family do not contain the GTXDXXYG motif C-terminal to the His zinc ligands that is typical for the M35 proteases. Deuterolysins are highly active towards basic nuclear proteins such as histones and protamines, with a preference for a Lys or Arg residue in the P1' subsite. MEPs specifically cleave peptidyl-lysine bonds (-X-Lys-) in proteins and peptides. Many members of the M35 peptidases display unusual thermostabilities.	2.75623e-36
NC_007951.1\|WP_011488318.1\|2402314_2404399_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	2.07753e-155
NC_007951.1\|WP_011488313.1\|2396344_2397124_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	3.97947e-31
NC_007951.1\|WP_011488312.1\|2394902_2396195_+\|HipA-domain-containing-protein	gnl\|CDD\|341494	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Shewanella oneidensis HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Shewanella oneidensis HipAB:DNA promoter complex, HipB forms a dimer that binds the duplex operator DNA, with each HipB monomer interacting with separate HipA monomers. The HipAB component of the complex is composed of two HipA and two HipB subunits.	2.83571e-132
NC_007951.1\|WP_011488308.1\|2386800_2388099_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	3.50877e-70
NC_007951.1\|WP_011488314.1\|2397135_2397456_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.52708e-33
NC_007951.1\|WP_007181992.1\|2398150_2398573_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.9725e-90
NC_007951.1\|WP_007182003.1\|2382311_2382998_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	2.76252e-104
NC_007951.1\|WP_011488310.1\|2390231_2394317_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NC_007951.1\|WP_011488303.1\|2379122_2381060_+\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	7.20021e-62
NC_007951.1\|WP_171914662.1\|2381608_2382283_-\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	6.68462e-93
NC_007951.1\|WP_011488307.1\|2385026_2386628_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	1.13521e-93
NC_007951.1\|WP_038458856.1\|2394655_2394913_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	7.19088e-13
NC_007951.1\|WP_007585907.1\|2378480_2378753_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	5.49297e-41
NC_007951.1\|WP_011488316.1\|2398702_2400259_-\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NC_007951.1\|WP_011488315.1\|2397457_2397988_-\|septation-protein-A	gnl\|CDD\|234704	PRK00259, PRK00259, intracellular septation protein A; Reviewed.	8.07757e-85

>NC_007951.1|WP_011488310.1|2390231_2394317_+|phosphoribosylformylglycinamidine-synthase
MAHFSCFPGASALSDFRQTRLLETLTRIDPNITGVRGQYLHFVNAQTPLSAEDNAKIEALMHYGQPLEESKERGTAEAFLVVPRFGTVSPWASKATDIAHLCGLTQVRRIERGVEYTVTLKSGLLGGRKALSDEARAAVAAALHDRMTESVSPSRDHALHLFDELPAKPLQTVDVLGHGRGALVAANTELGLALAEDEIDYLVDAFTKLGRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEKQDISLFNMIRNTEKLNPQGTIVAYSDNSAIMAGGMAERWFPRTPANLGASELPEHYRRSTELTHTLMKVETHNHPTAISPFPGAATGAGGEIRDEGATGRGARPKAGLAGFTVSNLELPDGVEAWENARDAAQPLAHRNPGDKHEAYGRPDRIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRAYEQNVAGLVRGYHKPIMIAGGIGNISDQHTHKHDLPEGSLLIQIGGPGMRIGMGGGAASSMATGTNTAELDFDSVQRGNPEIERRAQEVINACWQLGEKNPILSIHDVGAGGLSNAFPEVVDGAGKGARFDLRKIQLEESGLSPREIWSNEAQERYVLAIAPADLPAFEAMCQRERCPFAVIGTATAERQLKLIDSELNDDNAHQPVDMPMEVLLGKAPRMHRDVKRVERKLEPVDVTGLVLADVATSVLRHPTVASKSFLITIGDRSVGGTTARDQMVGPWQVPVADVAITTMDYAGFRGEAMTMAERTPLAVIDAPASGRMAVGEAVTNIAAAPIASLDKLKLSANWMAACGAAGEDAALYDTVKAIGMELCPALGISIPVGKDSLSMRTKWEDRGVAKEVVAPVSLIISAFAPVEDVRRHLTPQLRRASDVGESVLIAIDLGRGKHRLGGSILAQVTQQVGDTVPDVDDPEDLKRFFAAIQALNQDGKLLAYHDRSDGGLWATVCEMAFAGHVGVSLNVDMLVLDPNHESDYGDAKDWAKQTSGRREDRTIRALFTEELGAVVQVRASERDAVLVALREHGLSACSHVIGKINERDTIEIYRDAKKIYEAPRTELHRTWSEVSWRISRLRDNPACADAEYDALSDAADPGIAPVLNFDPTEDVAAPFVGRSARPRVAILREQGVNSHLETAYAFDRAGFDAHDVHMSDLLAGRANLADFAGAVACGGFSYGDTLGAGEGWAKAIRFNAQLADMFAAFFGRADTFALGICNGCQMMSSLASMIPGAEAWPKFTRNKSEKFEARFSLVEVQASPSIFFNGMEGSRIPVAIAHGEGYADFSQQGDASKVAVAMRYVDHRGQATEQYPFNPNGSPNGITSVTTPDGRFTVLMPHTERVHRAVQMSWHPEGWGEGGTDASPWMRVFQNARRWLG
>NC_007951.1|WP_011488309.1|2388365_2389907_-|peptidase-M35
MNVNRYGSTHQTSHPLALMQPPWGMAAAPARPSPRIHATDGTPRAPIGNVPASPPLGKVPGRAPRVGGLADPIERTGGKAATYTVDGAGKRVRESKDANGNPVRDTWEADGRHTRDSVGADGTRIRDTWEADGKHLHETCDANGKHVLDIWDAKGKHIHEVWDASGKHVLDIWDAQGKHKRIVWHKKHDNLPTSMRTHGLSPGHAGQNGRPMPRPVAGGAPASSPLPGNGNGGSEPSTPGGGGDAGRPVAPIGGSGGQPSAPIGGGGQPSGPAGNGGGQLFAPIGNGGGQLSAPDGDGGGQTSAPIGDNEGQPSTPTGGDSGDIQAPDDNSGDTDYDQPAPGTARTPGMIGFTPAQGGIVTRAYQHVKRMIDSALDKLESGHPDGNFARWFGSPTQRNVQKVEQVFTRMQHAMSHDRFTFVLGAPHDDSELAHVQPGSPHQINLKPHFFDHAFGANTPEATIAHELSHFPYIGNTRDHLYGPAAVAGLAQRNSDMATDNAENYGMFIRAQATA
>NC_007951.1|WP_011488308.1|2386800_2388099_-|FAD-dependent-oxidoreductase
MDVIVIGGGIAGVATAYQLRAAGHRVCVVERHATVAQGATYGHSGTVLPTPLDVWFGPTFMASRQNAKNGIVNKAGFNGPARQLVKQLAELQEPNAFGHQYGLLRPLIELSRDTLADMEARFGLEFEQASGVLYLVRTEQEWQQLRPALGLLRLFEVPHHELTPEQCAAFEHSVRTEPAFAGGVLFDQERTANCPLFTKLIKQTLDTQGDVQFMLGCEVASIRLEGQRAAVELAPRPGAASRSREVDVIHADAVVVAAGHGSLALLERLGLRLPLHPLRLHTLVAPIAHEECAPHVAIVDAVKRIAISRMNHRLRIAGGAVLQSAGQIDKPLGEAVTKEALALLGQATHDWIPGAARISAALPWEGAKLLSPDGLPVIGNALHPRLFVNIGHGPAGWGLACGSGKLVADLISGSAPELPADTLAALRADRFR
>NC_007951.1|WP_011488307.1|2385026_2386628_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MTEADPTPPTLISPHNRALPLLTLTDLRIAESQAQATLPKHTLMSRAGKSAASFLQEQITRDISIEKSRHKVWLIAGPGNNGGDALVLATELHRAGIAVELCMPVEVKPDDARWALETARAAGVAIGAAVPASLDDYTWLVDGMFGIGLTRPLEGVFADVARRLSQRTQARPRKGGVLALDVPSGLDSDTGTAVGNGNVIGEGAAVHATHTITFIGAKPGLFTAQGRDLAGAVTVAPIGVDTRGRTAVQLNAPELFAAFLPPRDFATNKGSFGSLAVVGGDTGMCGAPILASRAALYTGAGKVHVALLGEGAPPYDPPHPELMLHAIDDLPLDHMDALAVGCGMGHRERATRVMHDVLHLYVPKLFDADALNLISKDPALAAEVTARGVQGDPCILTPHPLEAARLLGTDAPGVQRDRLTAARALAARFASVVVLKGTGTVVAAPDGRLAINPTGNAALATGGTGDVLGGIIGALLAQRLPRYEAALAGVYLHGLAADTLSAQGHGPAGLTAGELAPMVRTLLNRLFYPAADC
>NC_007951.1|WP_011488306.1|2383169_2384792_-|glucose-6-phosphate-isomerase
MTQNSLPSWSSLQTHYEKIRDAHMRDWFAPENDPAPTRAERFAFAGGGLAADFSKNRITDETLKLLVQLAREAGVEKRRDAMFAGAVVNPTEGRAALHTALRATDPKAPFYDQVQAERARMAAFADQVRSGEWKGYTGKRIRYVVNIGIGGSDLGPKMVVHALHHLATPEITTHFVSNVDGADLYNVMQQIDPEETLAIIVSKTFTTLETMTNARSLRDWFVEKGCPESALAKHFVGVSANPAEVVKFGIAKENVFEMWDWVGGRYSLWSAVGLSIMIAVGPQQFGELLAGANEMDQHFRDAPLEKNLPVLLGMIGIWYRNFFGSQSYLVAPYSEALHFLPSYLQQLEMESNGKSARLDGVMVDYPTAAVTWGEPGTNGQHAFFQMLHQGPTIVPIDFIAVLTPEHPLVSHHPKLLANCFAQSEALMLGRTLEEAKKVAGADKPELAPHLVFPGNRPTSTLLVDALTARSLGALIALYEHKVLVQASVWDINPFDQWGVELGKILGKVVEADLTAPSVDEKKHDSSTSALIARARAALKK
>NC_007951.1|WP_007182003.1|2382311_2382998_+|ABC-transporter-ATP-binding-protein
MLNKTDPVIEVRGLCKKVKDATGELTILDDIDLAIAAGSSVAIVGASGSGKSTLLGLLAGLDSASSGSVRLLGRELGELNEDERAALRSGSVGFVFQSFQLMPHLTALENVTLPLELQGGISTREAATRARGLLEQVGLGKRTGHYPKLLSGGEQQRVALARAFVTHPAILFADEPTGSLDAATGHAVIDLMFEMNRANGATLILVTHDIELARRCDTTVTIEAGRLV
>NC_007951.1|WP_171914662.1|2381608_2382283_-|arylesterase
MTSHATALTTACGCAVMAATLFSASFAARAANAPEPARPVIVVLGDSISAEYGLPRDTGWVALMRQRLTDERIDYSVANASISGDTTSGGRARLPALMQRLKPSIVIVELGANDALRGVPLSTTEDNLRTIIEQAQQGHAKVVLVGMYVPPNYGPDYTQKFHGLYGELSKQLRVPLVPFLLAGIADKPDMFQADQIHPTQQAQPVLLNNVWPAVKPLLRTSSPH
>NC_007951.1|WP_011488304.1|2381148_2381490_-|hypothetical-protein
MKYLPLIALTVAISACAAQPPAGVQSVGQSQQPPKAVATCIAQKWADSSQQQVVSQDTLANDQAMDVYVPGQQPPNGAAAVVRPSYTGKGTWVGFRGNGAAGSDATGAISGCL
>NC_007951.1|WP_011488303.1|2379122_2381060_+|SurA-N-terminal-domain-containing-protein
MLDFFRNHKRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAMRQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSGIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKAKSLQPAADKYKLQLQTATVTPQPDPKLAPDSPLNNAKFLAAVFASDAVTAHNNTQAIDVGGNTLIAARVIDYKAAAVPSLDAVKDAVRQKVIAVQSDEAAHKDGAAKLAEFEKSKSTAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIYRVNAVVAGAAVDPQRLAAAQQQIAQVDAQSEAEAYLQALRARSKVKFYGSLDSSNAQASSE
>NC_007951.1|WP_007585907.1|2378480_2378753_+|HU-family-DNA-binding-protein
MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTGRNPRTGAAIKIKAAKVPKFRPGKALKDALN
>NC_007951.1|WP_038458856.1|2394655_2394913_+|helix-turn-helix-transcriptional-regulator
MTALGDLVRASRLAQGLTRDDLAIAAGLSPKFITHIEAGKPTAQIGKVLHLLAELGITLRAQVSVDIPPASATKALQRRRTTHGR
>NC_007951.1|WP_011488312.1|2394902_2396195_+|HipA-domain-containing-protein
MAARTLVAYANGRRVGIVSDDSGIWSFTYDKDWLAREDAFELSPAFPLAAGSFVDGSSQRPVQWFFDNLLPEAEMRIALAREARVEAGDAWGLLAYYGRESAGALTLLAEGEHEASGGLQPLSYANLEARIQAMPQHALTATAPKRMSAAGAQQKLLLTLRGDAPDYELFEPVGSEPSMHLLKPDMRSTGYPHSAINEFFCMRLARAMGVRVPPTHFIRVPSACYVIDRFDRDTTTEPARRLHTVDAMQLLNYDRSFKYQNATAQVLSDAIEKTSTRAVARLDVFRWAVFNVLIGNADSHLKNLSFFVSPRGYMLAPFYDLVSTVVYHTPTYQPQQRDRWPHCDLTMPVGDATRFADISRRNMLAFGEALHLAPRGSERLLDDMLAILDARVMDTRRAVGEIAQPNAGEVRLLDSIVAMPLAEMSAALRK
>NC_007951.1|WP_011488313.1|2396344_2397124_-|peptidylprolyl-isomerase
MTLKKTRLWVLLAAFAAAPAFAQNIAVVNGTPIPKARADALIDQLVHQGQQNTPQLQMAVREELVNREILMQEALRRGLPNRPDIKAQIAVAQQTVVLRALIEDFVKNNTPTDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ
>NC_007951.1|WP_011488314.1|2397135_2397456_-|BolA-family-transcriptional-regulator
MTSNADVFMHATTAERAALIETRLAAALAPVESIRITDDSAQHAGHAGASAGGHFSVTIVAAAFAGKARVARHRMVYDALADAMQRGIHALAITAYTPEEFALLPR
>NC_007951.1|WP_011488315.1|2397457_2397988_-|septation-protein-A
MKFLFDLFPIILFFVAFKIWGIFTATAVAIVATLVQIAWVAFRHRKVDPMLWVSLGVVTVFGGATLVLHNDTFIKWKPTVLYWAFSVALIVSQLAFNKNLIEAMMGKQITLPHAIWGKLNVVWGVFFVLLGLVNLFVAYNYTTDQWVNFKLFGATGCLVVFIVGQSLWLSKYMKEE
>NC_007951.1|WP_007181992.1|2398150_2398573_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MNKPDDLNTDAPAVQKDDAEWRKQLSDVEYQVTRHAATERPFTGRYHDHWDRGIYDCVCCGTPLFESDTKFDAGCGWPSYFKPINGEVIAEKTDRSHGMLRIEVQCKNCGAHLGHVFEDGPAPTGLRYCINSAALQFEPK
>NC_007951.1|WP_011488316.1|2398702_2400259_-|YdiU-family-protein
MSFSPSIAGLSGPLSALSDALTTAPESAFASLGSVFLTRLPAAPLSAPYVVGFSAETAALLGLEPGIENDPAFAELFSGNATREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEHGGRRFELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALCVIGSDQPVRRETVETAAVVTRVAPSFVRFGHFEHFYSNDRTDALRALADHVIERFYPHCREADDPYLALLNEAVISTADLMVEWQAVGFCHGVMNTDNMSILGLTIDYGPFGFMDGFDAGYICNHSDSQGRYAYRMQPQIAYWNLFCLAQGLLPLLGEKHEESVRGDKAIEDAQRVLGGFKDRFAPALERRMRAKLGLETERAGDDALANRLFEVMHANRADFTLTFRNLARVSKHDASGDAAVRDLFLDRAAFDAWVNDYRARLSEETREDAARAIAMNRVNPKFVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHEAYAGLPPDWASSLEVSCSS
>NC_007951.1|WP_011488317.1|2400456_2402145_+|fatty-acid--CoA-ligase
MTTPLAGQMMDVPLTVPSLLAHAARHFGSTEIVSRRIEGDLHRYTYRDCEKRAKQLAQALIALGVEPGERVATLAWNGYRHLEAYYGTTGFGAVCHTINPRLFPDQIAYIINHADDAYVLFDTTFAPLVDVLAPQCPKVRGWIALADEAHLPAMQTPVLSYETLVTAQDGNYEWPPLDERQASYLCYTSGTTGNPKGALYSHRSTVLHAFGAALPDAMSLSARDCVLPVVPMFHVNAWGIPHSAPLTGAKLVFPGKDLDGKSLYELMESERVTYSAGVPTVWLGLLNYLREAKVRFSSLNRTVIGGSACPPAMLRTFEDDYGVQVIHAWGMTEMSPLGTLSRLTWEQSQRPLEEQRKLLEKQGHVLYGVDMKIVGEDGRELPWDGVAFGDLHVRGPWVIDRYFRKDDSPLVDGWFPTGDVATIDRDSFLHITDRSKDVIKSGGEWISSIDIENVAIAHPAVAEAACIACAHPKWTERPLLVVVKRPGFEVTRDELIAFYEGKVARWWIPDDVAFVDELPHTATGKLQKLKLRDIFRDHVLPSALEDEKDCPLTPLARGNPVS
>NC_007951.1|WP_011488318.1|2402314_2404399_+|enoyl-CoA-hydratase/isomerase-family-protein
MAVDYTTHDGVAVITLNNPPVNGLGLSTRAGIVEGIERAQNDPGIEAIVLTGAGKAFSGGADITEFNTPKATQEPTLATVIKIVEGSAKPVVAAIHSVAMGGGLELALGAHYRVAAPGAQIALPEVKLGILPGAGGTQRLPRAIGLEAALNMIVSGTPVMSEKLADSGLFDELAQGDLAEAALAFARKVGAKEGPHPKLRDRRIEHPNAAGFIQFARNSVAAVAKHFPAPHKCIDAVEAGVQNGFDKGLAFERECFIALVQTPESRALRHAFFGERAASKIPDVPSDTPVRDINQVAVIGAGTMGGGIAMNFINAGIPVTLLETRQEALDRGLATIRKNYEASVRKGKLKPEALEQRMALITPTLSYDDLKNADLIVEAVFEELDVKEQVFRRLDEVAKQGAILASNTSTLDVDRIAAFTKRPQDVVGMHFFSPANVMKLLEVVRGRETAKDVLATVMKLAKKIRKTAVVSGVCDGFIGNRMIEQYIRQALFMLEEGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYQEHPDMHYSKIADRLCETGRFGQKTGGGWYDYKAGDRTAYPSKVVDDMIVAFSKEANAGRRKISDEEIVERLVFSLVNEGAKILEEGIASKASDIDMVYLAGYGFPLYRGGPMLYADTVGLYNVERAIRRYAAQPNGDAWQLASGIAALAAQGRGFNG
>NC_007951.1|WP_011488319.1|2404537_2405716_+|acetyl-CoA-C-acyltransferase
MTDAVIVSTARTGLAKSWRGGFNMTHGATLGGHVTQAAVERAKLDPARVEDVIMGCANPEGATGMNIARQIALRAGLPVSVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVYVAGGVESISCVQNEMNHHMLTEGWLSENKPEIYWSMLQTAENVAKRYSISKERQDEYGVRSQQRAAAALEAGRFKDEIVPLTVLAGVTDKAGGRLFTKEVTVSGDEGIRADTTLEGVSKIRTALPGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCEPDEMGIGPVFAVPKLLRQAGLKVEDIDLWELNEAFAVQVLYCADKLGIPQDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKRRGAKLVVVTMCIGGGQGAAGLFEVV

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Crispr_ID: NC_007951_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007951_3

3372291-3372362

Orphan

Consensus_repeat	Method
AGCGCTTACTCTGGTCCCATGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007951_3

>merge|NC_007951|3|3372291-3372362|CRISPRCasFinder
AGCGCTTACTCTGGTCCCATGCACCGCTGTCGACCAGAGTTAGCGCTTTAGCGCTTACTCTGGTCCCATGCA

>NC_007951|3|3|3372291-3372362|CRISPRCasFinder
AGCGCTTACTCTGGTCCCATGCA	CCGCTGTCGACCAGAGTTAGCGCTTT
AGCGCTTACTCTGGTCCCATGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007951.1\|WP_011489128.1\|3374430_3374955_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_007951.1\|WP_011489127.1\|3373996_3374407_+\|DUF2000-domain-containing-protein	unknown	unknown	gnl\|CDD\|378176
NC_007951.1\|WP_011489125.1\|3373204_3373603_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|272886
NC_007951.1\|WP_011489131.1\|3377713_3378418_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_007951.1\|WP_011489129.1\|3374951_3376622_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341275
NC_007951.1\|WP_171912445.1\|3361640_3362753_-\|MSMEG_0568-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|274940
NC_007951.1\|WP_038457636.1\|3381734_3382943_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|132248
NC_007951.1\|WP_011489119.1\|3366224_3368024_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NC_007951.1\|WP_011489117.1\|3362703_3363750_-\|Nit6803-family-nitriliase	unknown	unknown	gnl\|CDD\|188563
NC_007951.1\|WP_011489120.1\|3368046_3369627_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_007951.1\|WP_011489118.1\|3364604_3365996_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_007951.1\|WP_011489122.1\|3370167_3370518_-\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226771
NC_007951.1\|WP_038457639.1\|3378478_3379387_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_007951.1\|WP_011489130.1\|3376618_3377539_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187627
NC_007951.1\|WP_011489124.1\|3372377_3373091_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236641
NC_007951.1\|WP_011489123.1\|3370663_3372250_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_007951.1\|WP_007181138.1\|3363769_3364252_-\|MSMEG_0572-family-nitrogen-starvation-response-protein	unknown	unknown	gnl\|CDD\|188559
NC_007951.1\|WP_011489133.1\|3379532_3381653_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236864
NC_007951.1\|WP_011489115.1\|3361032_3361638_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274941
NC_007951.1\|WP_011489121.1\|3369687_3370068_-\|DUF5594-family-protein	unknown	unknown	gnl\|CDD\|375523

Protein	Function_ID	Function_description	E-value
NC_007951.1\|WP_011489128.1\|3374430_3374955_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.14092e-32
NC_007951.1\|WP_011489127.1\|3373996_3374407_+\|DUF2000-domain-containing-protein	gnl\|CDD\|378176	pfam09391, DUF2000, Protein of unknown function (DUF2000). This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold.	8.72203e-53
NC_007951.1\|WP_011489125.1\|3373204_3373603_-\|VOC-family-protein	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	2.15479e-27
NC_007951.1\|WP_011489131.1\|3377713_3378418_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.77058e-11
NC_007951.1\|WP_011489129.1\|3374951_3376622_-\|AMP-binding-protein	gnl\|CDD\|341275	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NC_007951.1\|WP_171912445.1\|3361640_3362753_-\|MSMEG_0568-family-radical-SAM-protein	gnl\|CDD\|274940	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family. Members of this protein family are radical SAM proteins related to MSMEG_0568 from Mycobacterium smegmatis. Members occur within 8-gene operons in species as diverse as M. smegmatis, Rhizobium leguminosarum, Synechococcus elongatus, and Sorangium cellulosum. The function of the operon is unknown, but similarity of MSMEG_0568 to some cofactor biosynthesis radical SAM proteins suggests a similar biosynthetic function. [Unknown function, Enzymes of unknown specificity].	0
NC_007951.1\|WP_038457636.1\|3381734_3382943_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	1.75375e-158
NC_007951.1\|WP_011489119.1\|3366224_3368024_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.831e-95
NC_007951.1\|WP_011489117.1\|3362703_3363750_-\|Nit6803-family-nitriliase	gnl\|CDD\|188563	TIGR04048, nitrilase_sll0784_family, putative nitrilase, sll0784 family. This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165. [Unknown function, Enzymes of unknown specificity].	0
NC_007951.1\|WP_011489120.1\|3368046_3369627_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.40793e-89
NC_007951.1\|WP_011489118.1\|3364604_3365996_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.67916e-90
NC_007951.1\|WP_011489122.1\|3370167_3370518_-\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|226771	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only].	1.18615e-33
NC_007951.1\|WP_038457639.1\|3378478_3379387_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.64894e-54
NC_007951.1\|WP_011489130.1\|3376618_3377539_-\|SDR-family-oxidoreductase	gnl\|CDD\|187627	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR. TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.95664e-94
NC_007951.1\|WP_011489124.1\|3372377_3373091_-\|hypothetical-protein	gnl\|CDD\|236641	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA.	4.73879e-06
NC_007951.1\|WP_011489123.1\|3370663_3372250_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.00722e-58
NC_007951.1\|WP_007181138.1\|3363769_3364252_-\|MSMEG_0572-family-nitrogen-starvation-response-protein	gnl\|CDD\|188559	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein. This model describes a family of proteins with remote similarity to the DsrE/DsrF-like family (see pfam02635). All members are found in a context of at least seven genes that includes a radical SAM protein, suggesting biosynthesis. The system is sparsely but broadly distributed in bacteria, including Actinobacteria, Proteobacteria, and Cyanobacteria.	3.7232e-104
NC_007951.1\|WP_011489133.1\|3379532_3381653_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	4.14221e-157
NC_007951.1\|WP_011489115.1\|3361032_3361638_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|274941	TIGR04045, acetyltransferase_GNAT_family_protein, putative N-acetyltransferase, MSMEG_0567 N-terminal domain family. Members of this family belong to the GNAT family (pfam00583), in which numerous characterized examples, though not all, are are shown to be N-acetyltransferases or to interact with acetyl-CoA. This family occurs in a sparsely distributed biosynthetic cluster that occurs in Actinobacteria, Cyanobacteria, and Proteobacteria.	2.34344e-92
NC_007951.1\|WP_011489121.1\|3369687_3370068_-\|DUF5594-family-protein	gnl\|CDD\|375523	pfam18057, DUF5594, Domain of unknown function (DUF5594). This domain was first discovered in BPSL1050, a highly immunoreactive protein found in Burkholderia pseudomallei. The domain's structure consists of three helical regions which pack onto an antiparallel beta sheet, formed by four strands. The beta sheet is solvent exposed on one side and packs tightly against the three helices on the other side, generating a network of hydrophobic and aromatic interactions that contribute to tight packing of the protein. Is is thought that the small loop L1, the main loop L2, and part of helix alpha-3 extending until Leu120 are the three main immunogenic sequences.	3.73589e-66

>NC_007951.1|WP_011489123.1|3370663_3372250_-|GMC-family-oxidoreductase
MNQDNNKVRFSHNDDKVVVIIGSGAGGGTLANELAQKGIDVVVLEAGRLHTQADFTTDEWGAFQMLSWLDKRTTSGTWRVAKDFPNLPAWICKTVGGTTTHWAGASLRIKPHEFKAKTTYGDIKDANLLDWPLTREELDPYYDRAQLKMGVTRTNGLPGLPGNNNFKVMSAGAMKVGYKDCNTGHMAINSVVRDDRAHCFQRGFCFQGCRTGAKWSTLYTELPRAQATGHMELRTQAHVVRIETDARGKAKEVLYYDGNGKLQRQKARIVAVAGNSIETPRLLLNSHSSRFPQGLANGSGQVGRNYMRHTTGSVYAAFNDKVDMFKGTTMAGIIEDEAVFNPQRGFAGGYHMETISLGLPFYAAFLDPGAWGPTFTQAMDQYAYTAGMWIVGEDMPRETNRVTLNTDVKDQYGQPVANVHFDDHPNDEAMREHAFRQGSAVYEAAGAKTVYRVPPYPSTHNLGTARMSARAEDGVCNSFGQTHEVSNLFISDGSQFTTGAAENPTMTIVTLAIRQADHIAAQMNKRAV
>NC_007951.1|WP_011489122.1|3370167_3370518_-|ribbon-helix-helix-domain-containing-protein
MCGIYINADPILYESRTRSLRIHGVITTVRLENLFWDVLHEIAARENMTTSQFAVQLYDELIALRGELPTNFASFLRVCCLRYLSMRTEKGADVPDTIPEPAAGSGEARPRMLKTV
>NC_007951.1|WP_011489121.1|3369687_3370068_-|DUF5594-family-protein
MRPESAARFDQQFAPRIAEALAACFATTVHTEVLPYGGHGHPTRVRIHAAPIEDLGLYPHPLNLYLTWDSDEIERLMGAEGPARFAGYLAALPRKLAAWNRARELDFVSHTQAEPVALIGGLDFES
>NC_007951.1|WP_011489120.1|3368046_3369627_+|HAMP-domain-containing-protein
MTFYRNLKIAVKLALLGAVLLAATMIVGLEGWHALSRTHALQIESARSLSQYAQAADTARVAQVEFKKQVQEWKDLLLRGADPAAFAKYRDAFNKESGTTHAALLRLKDQLSAVGANVDGVDKALATHAALQDSYLAALRHYDAADPNTAHVVDALVKGIDRAPTAAIDDIVAAVMQQAHDSSVRTSEAAEHAYTIATVLLLSVVIGSLGVGAFAVWFLSRSITVPVRQAVGVAQAVAAGDLRADVPVVSRDETGQLLVALNDMNQRLRHIVSEIREGAHTISSATQEIAAGNLDLSARTEQQAASLEETAASMQHFTDSVQRNAANAREATALAQTAAHAAREGGAVMTDAVRTMGQIDAASRRIVDIIAVVEAIAAQTNILALNAAVEAARAGTQGRGFAVVASEVRSLAQRSADAAREIKTLIRESVATIEAGTQLIDRASNTMDGVVESAGSVTRIVESIATASADQATGIAEVNDAVTQMDQVTQSNAALVEQAAAAADAVQSKASGLVQSVSFFRLGATA
>NC_007951.1|WP_011489119.1|3366224_3368024_+|methyl-accepting-chemotaxis-protein
MFTSIRARIVALCVAIVVVALAANAVLNYVVANSYNADAINSSLTAVESGHAAGISDWVASNSQMINSLQDAVLQPDPSAALKQIAAAGKFTNVYVGYADKTAKFSDPTGIPADYDPTGRPWYKQAATAGKPVVTPPYVDVGTGKLVVAFAVPVVRDGAVKGVVSGDVAMDSVIANVKAIHPTPASFGMLIDASGHIVAHPDPKLTLKPVSDVAAGLSGDKLAALFSADRPLEMDVNGSTKLMRAQAIPGTDWYAVVALDKAEATAGMRSLLTASVIALIVIAGIAAAVVAAVTAVSFQRLSKVRDAMDAIGSGEGDLTQRLPAVGNDEVAQIARSFNTFIDKLSRVMRQIRDASESVRVAANEIAAGNVDLSGRTESAAASLQQTAASMEEITSTVTQSASSAKQADDSAVSASQVASRGGVVISEVIATMGEIQHASVKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAQAAKEIKALIESTVASVSSGSGQVRQAGETMTEIVSNVANVTTIISEITQAANEQTRGIQEVNRAVSQLDEMVQQNAALVEESTAAAAALQSQAVSLAGAVTQFKLD
>NC_007951.1|WP_011489118.1|3364604_3365996_+|PLP-dependent-aminotransferase-family-protein
MSSPTHHWIKRLADIRKPAYLAIPDLIEEDLATGRLRPRDRLPGLRDLAEELALNYTTVARAYAEARKRGLLDSRAGSGTFVRGRTATLPLAGGSSIEMSMNTPPEPPDYAMRLRDSAARRMAESDPYQLLRYQDFGGSAADKDAGAEWLRRRVPHCDAQNVLVCPGIHSALVALVSQLARPGATICLDSLAYPGIKAIAAQLGVRLQALPRDDEGPLAHAFEALCKTDKPSAFYCNPTLQNPSTLTLTHKRREALADVALRYSVPIIEDDAYAMLPQSAPDALASLAPELTYYVTGLSKCFGAGLRVAHLHAPTPRQTQRLAGALRATTVMASSYTVMLATQWIADGTAADMLTAIRNESRARQAIAARMLEAWPYEAHQDGFHLWLPVPVESGWSASELALQLRNQGIAAVAGAAFSTDGNPPNAMRVCLGGSKTRDECTEALRIVAETLDHPHHLHSPVM
>NC_007951.1|WP_007181138.1|3363769_3364252_-|MSMEG_0572-family-nitrogen-starvation-response-protein
MPAVNKPLHQKGDYLVDYEEKVFEDVKAEPGEKALVTFHTVAFEGSIGFVNLLQATRLQRKGFETSVLLYGPGVTLGLQRGFPTLGDEAFPGHLNFNKQLTKFMEEGGKVYACRFALQALYGHGEASLIEGIRPISPLDVLDIQLLHRKDNALVIHTWTV
>NC_007951.1|WP_011489117.1|3362703_3363750_-|Nit6803-family-nitriliase
MSDKSTGKRIVRAAAVQIAPDFERSGGTLEKVCEAIEQAAREGVQLIVFPETFVPYYPYFSFVRPPVASGADHMKLYEEAVVVPGPVTQAVAEQARLHRMVVVLGVNERDHGSLYNTQLIFDVDGQIVLKRRKITPTFHERMIWGQGDAAGLTVARTAVARVGALACWEHYNPLARYALMTQHEEIHCSQFPGSLVGPIFADQIEVTIRHHALESGCFVVNATGWLSEAQIASVTPDTNLQRALRGGCNTAIVSPEGQHLAEPLREGEGMVIADLDMALITKRKRMMDSVGHYARPELLSLAINRRPAETVAPMQAWPAVPGADFNSTEGGCDERQRTAVGREPAIDD
>NC_007951.1|WP_171912445.1|3361640_3362753_-|MSMEG_0568-family-radical-SAM-protein
MNASEPLSAESRQLMTELQSAGLRLVSPDSGAASRRGGAGPSDHKAVTVDGVTIMVPVHTSTAWHSPFVAQTPDASGSSALLRGTIPIASISFPKAPRFYGMQTLDGVPYSHIATLHGADVLATTVLQTCIRYESRRKSCKFCAIGQSLAAGRTIARKTPEQLAEVARAAVLLDGVKHMVLTTGTPPTPDRGAQILCESAFAIKAAVDLPIQAQCEPPDDDRWFARMKASGIDTLGMHLEVVTPELRERIMPGKASVPLSRYMEAFRSAVAVFGRGQVSTYILAGLGDSAEAILTMSRELIELGVYPFVVPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSSDIKAGCGKCGACSSLSSYEA
>NC_007951.1|WP_011489115.1|3361032_3361638_-|GNAT-family-N-acetyltransferase
MFGEAIAGEALDGDMGFAPYAPSEFRIKWTTLNWEAEEAFRLRRAVFCIEQGIFIGDDRDGIDQHAQQLVAVSCLGGMPEQVVGTVRIHRDHDNVWFGSRLAVHAAFRRHGKIGATLIRLAVSSAHALGCETFLAHVQSQNVPLFRAMYWDVLAEETLLGRPHHLMQAQLDRYPPCATPYGGFVTQSQPSARRRERERSAA
>NC_007951.1|WP_011489124.1|3372377_3373091_-|hypothetical-protein
MKTTIIPIVASGHAHHAHHHEHEHPHEHPHEHSDEHSDEHGGGQRAAKAATAALRIPLTRRELLRGTGVLMGTLAVSSVLSSFAPSRAWALELQGLDTHQGEVILAFTRQLYPHPTLDNAVYALVVKDLDAKAKADPAVRQQLADGVKQLDAQAGSDWLKRAPSDQARDVAALAGTPFFNTIRSTAVVSLYANTMAYAHFGYGASEGDGGYLNKGFNSLSWLPNPPASASGPIPTDS
>NC_007951.1|WP_011489125.1|3373204_3373603_-|VOC-family-protein
MAKLIHTMIRVHDLPRSLQFYQKAFNLDVSHRLDFPDFTLVYLRNGEADAEIELTWNKGRTEPYSHGDGYGHVAFCVDDAKRERQRLLDLGMTPNDLREFHNDDGELLARYFFIQDPDGYKIEVLERYGHYQ
>NC_007951.1|WP_011489127.1|3373996_3374407_+|DUF2000-domain-containing-protein
MEFDTKVAIIVLDDLAVWQKLNVTAFLATGIAGAAPEAMGEPYEDAAGRRHARLFGQPMMVYQADNAGLLRAFRQGIERELTRAVYVRAMFSTGHDQANRDVFRAEPADAPDLVGLAVRGPKKAVDKAVKGLSLHA
>NC_007951.1|WP_011489128.1|3374430_3374955_-|Lrp/AsnC-family-transcriptional-regulator
MSTIRRSLTTRSGRALRAPGAQPGAASLDDTDRKLLALLAEDATRTYAELGKLLFLSAPAVHERARRLKKEGVIKATVAALDAAKLNRPLLAFVHVDTTSWAVTRQLLALQELSDVEEIHTVTGESAMLLKVRTRDTQSLEQLLARIHAIEGFTGTRSYIALTTYLERGPSPDL
>NC_007951.1|WP_011489129.1|3374951_3376622_-|AMP-binding-protein
MNLDGQTYESLTANFAWQIPARYNIGVDVCDKWADGSGRLALIYEDPEGTATRYTFDELKALSDRFANALLAAGAQRGDRIGIFLSQSVETAIAHLAAYKAGMVAVPLFALFGVDAIEHRLGDSGAVALITDHGGVQKVDEIRAALPSLRNVFSVDIDRDNGDPHAPVRSFWHALKSAPAGFTPVDTGADDPAVIIYTSGTTGKPKGALHGHRVLPGHLPGVEMSQQGFPAHATLIWTPADWAWIGGLFDVLLPSWHHGVPVLARRFAKFDGEAAFDLMARHAVSHTFLPPTALKMMRGVERPERWSLALRSVASGGESLGEELIGWGRKALGVTINEFYGQTECNVVVSSCAALFEPRFGAIGRAVPGHHVAIVDMDGNELPPGAIGDIAVAAPDPVMFLGYWGNEAATREKFRGKFLVTGDLGTCDADGFIRFVGRGDDVITSAGYRIGPASIEDSLLRHPAVSMAVVIGAPDRERTEIVMAFVVLNPGFAGDAALVREIQQHVKTRLAAHEYPREIRFVDSLPLTATGKVIRKALREGLEQDADNPASKPERR
>NC_007951.1|WP_011489130.1|3376618_3377539_-|SDR-family-oxidoreductase
MPAASSSTSPPSNGYRSVFREGLFAGKVIIVTGAGSGLGRCTAHELASLGATLALVGRSEDKLKAVQAELAEDHQRTSAGHKTYSCDIRNEQQVRETIASIIADLGRVDGLFNCAGGQFPAKLEKISLNGWDAVVRNNLHGTFLMSRECYTQWMEHHGGTIVNMLADIWGGMPGMGHSGAARAGVWNFTETAACEWGHAGVRVNAVAPGWIASAGMDSYNEDYQALLRTLRHKVPLQRFGTESELAGAAVFLLSEASAFINGTVIRVDGGVPNARHSWPLPPAERTIEYNGFPRYQPPTGLQEQTP
>NC_007951.1|WP_011489131.1|3377713_3378418_+|TetR/AcrR-family-transcriptional-regulator
MTASAISRRVPVQARSEQRLKAILEAARLVFSEVGYASATMTEIAGRVGVSEATIFTYFASKRDLCVRVLGNWYDEIITQVENELPLIAGTRNKFAYLVRTHLYRLTVDGTGLCALILSEGREKDDKFGDVIVELQRRYTAPMMNVLAEGVASGDVRGDMPLGLLRSAVYGPMEHVLWDAVRKQKAVDIEATAASLSDLLWQGLVPPDAQEAALRQLRSDVIGAVKRFEAAGSK
>NC_007951.1|WP_038457639.1|3378478_3379387_-|LysR-family-transcriptional-regulator
MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEIGLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSEPPQNLVARDMGPVRYVACASPAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQAVLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQAHGTGRGVPA
>NC_007951.1|WP_011489133.1|3379532_3381653_+|enoyl-CoA-hydratase/isomerase-family-protein
MTLNPSADVVTRELRGKVLLVTIDHAPVNALSADVRRGLLAAVEAADADSAVQAVLIVGAGRNFIAGADIREFGKPPLPPALPDVCNRIEACTKPVVAAIHGAALGGGLEVALAAHYRIAVEGAKLGLPEVQLGLLPGAGGTQRTPRLIGAQAALDLILSGRHASAKEALALGLIDRLGSSGDILAEGLAYVHELLAAHAPVRRTRDAVAPGDRAASLAAVTAARAETAKKSRGLFSPLKIVDAVEAAIEQPFDEGLRLERKLFLECLDSPQRAGLIHAFFAEREVLKAPETRDAKPRALNAIGVVGGGTMGAGIAVAVLDAGLPVTMIERDDASLARGLAHIEKVYDGLIARGRMSAEKKAAVMTRWNGSTSYDALTDADLVIEAVFEDLAVKQAVFAELDRVCKAGAVLATNTSYLDIDAIAASISRPADVIGLHFFSPANIMKLLEVVVPKRVSADVVATAFELAKKLRKTPVRAGVCDGFIGNRVLAVYRAAADAMMEDGASPYQIDAAVRAFGFPMGPFQVVDLAGGDIGWAARKRRAATRNPAARYVQIADRLCERGWFGQKTGRGFYLYPEGSRSGTPDPEVEAIIDAERARAGITPRSFTDDEIIRRYMAAMINEGANVVHERIALRPLDVDVTLLYGYGFPRYRGGPMKYADMVGLPKILADIREFAKEDPLFWKASPLLVELVERGADFASLNQTA
>NC_007951.1|WP_038457636.1|3381734_3382943_+|acyl-CoA-dehydrogenase-family-protein
MDLNFTPEEEAFRADVQAFLRDRLPPRLADKVHGGRRLTRDDMAGWHAILNAQGWLANHWPKEYGGPGWNPVQKFIFENECALAGAPRVVPFGVNMLGPVLIKYGSEAQKRHWLPRILDGSDWWCQGYSEPGAGSDLASVKTSAVRGTDAQGEHYIVNGQKTWTTLGHYANMIFCLVRSATDVRKQEGISFLLIDMKTPGVEVCPIITLDGEHEVNEVFFTDVRVPVENLVGEENKGWTYAKYLLTYERTNIAGVGFSVAAFNRLRKIAAKQRRNGRPLAEDPAFAARMARVEIDLENMKTTNLRVIAAVAGGGVPGAESSMLKIRGTEIRQEISSLTRRAMGPYAQPFVEEALQDGFEGTPVGPDEAASAASLYFNNRKLSIFGGSNEIQKNIISKMILGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445496-445521	3	0.885
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445545-445570	3	0.885
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	445594-445619	3	0.885
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	220705-220730	3	0.885
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	601857-601882	3	0.885
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1040813-1040838	3	0.885
NC_007951_2	2.3\|2394559\|26\|NC_007951\|CRISPRCasFinder	2394559-2394584	26	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	15529-15554	4	0.846
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1412238-1412263	4	0.846
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1416906-1416931	4	0.846
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	865576-865601	5	0.808
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1079634-1079659	5	0.808
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	870256-870281	5	0.808
NC_007951_3	3.1\|3372314\|26\|NC_007951\|CRISPRCasFinder	3372314-3372339	26	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1084314-1084339	5	0.808

1. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
aggctgtcgacgagagttagcgcttt	Protospacer
  ********* **************

2. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
aggctgtcgacgagagttagcgcttt	Protospacer
  ********* **************

3. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
cctgtgtcgacgagagttagcgcttt	Protospacer
**  ******* **************

4. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
ctcctgtcgatcagagttagcgcttt	Protospacer
*. *******.***************

5. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
cctgtgtcgaccagagttggcgcttt	Protospacer
**  **************.*******

6. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 3, identity: 0.885

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
cctgtgtcgaccagagttggcgcttt	Protospacer
**  **************.*******

7. spacer 2.3|2394559|26|NC_007951|CRISPRCasFinder matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 4, identity: 0.846

caagtctccatcccggtcacgtggca	CRISPR spacer
gaggtctccatcccggtcaagtggct	Protospacer
 *.**************** *****

8. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 4, identity: 0.846

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
tccatgtcgaccagagttggcgcttt	Protospacer
.*  **************.*******

9. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 4, identity: 0.846

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
tccatgtcgaccagagttggcgcttt	Protospacer
.*  **************.*******

10. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 5, identity: 0.808

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
agcgtgtcgaccagagttagcgctta	Protospacer
    *********************

11. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 5, identity: 0.808

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
tccttgtcgaccagagttggcgcttc	Protospacer
.* .**************.******.

12. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 5, identity: 0.808

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
agcgtgtcgaccagagttagcgctta	Protospacer
    *********************

13. spacer 3.1|3372314|26|NC_007951|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 5, identity: 0.808

ccgctgtcgaccagagttagcgcttt	CRISPR spacer
tccttgtcgaccagagttggcgcttc	Protospacer
.* .**************.******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5931 : 65536

Escherichia_phage(10.0%)

transposase,plate,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041743832.1\|5931_7446_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_085953574.1\|8407_9219_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_038458439.1\|11961_13479_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.3e-13	27.5
WP_011486406.1\|13468_14278_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.2e-35	35.6
WP_011486407.1\|14423_15005_-	flavin reductase	NA	NA	NA	NA
WP_011486408.1\|15110_16586_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011486409.1\|16648_17965_-	oxalate/formate MFS antiporter	NA	NA	NA	NA
WP_011486411.1\|18385_19111_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011486412.1\|19241_20768_-	altronate dehydratase	NA	NA	NA	NA
WP_011486413.1\|20899_21616_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_049782062.1\|22010_22595_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_011486415.1\|22754_24158_+	ethanolamine permease	NA	NA	NA	NA
WP_011486416.1\|24201_25596_+	ethanolamine ammonia-lyase subunit EutB	NA	NA	NA	NA
WP_011486417.1\|25592_26390_+	ethanolamine ammonia-lyase subunit EutC	NA	NA	NA	NA
WP_007179827.1\|26406_26802_-	DUF779 domain-containing protein	NA	NA	NA	NA
WP_011486418.1\|26867_28388_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_011486419.1\|28716_29775_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038457122.1\|29837_31937_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.5e-138	45.5
WP_011486421.1\|32343_32775_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_007179822.1\|32876_33077_+	hypothetical protein	NA	NA	NA	NA
WP_011486423.1\|33112_34516_+	ATP-dependent RNA helicase DbpA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	3.6e-46	31.2
WP_011486424.1\|34840_35995_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_011486425.1\|36116_36911_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011486426.1\|37084_38950_-	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_049782063.1\|39474_40023_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_011486428.1\|40055_41948_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038457118.1\|41947_42280_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_081435468.1\|42423_44568_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_011486430.1\|44698_46036_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_011486431.1\|46091_46448_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_148222887.1\|46776_50670_+	RHS domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	5.7e-33	43.5
WP_011486433.1\|51140_51545_+	PaaI family thioesterase	NA	NA	NA	NA
WP_011486434.1\|51582_52461_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_038457115.1\|52546_53560_-	D-2-hydroxyacid dehydrogenase family protein	M1HBE3	Paramecium_bursaria_Chlorella_virus	6.0e-11	24.4
WP_011486436.1\|53940_55797_+	phosphoenolpyruvate carboxykinase (GTP)	NA	NA	NA	NA
WP_011486438.1\|56136_57240_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011486439.1\|57406_60073_-	DNA topoisomerase III	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	2.4e-19	24.3
WP_011486440.1\|60320_60698_-	thioredoxin family protein	NA	NA	NA	NA
WP_011486441.1\|60787_62053_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.9e-26	36.1
WP_011486442.1\|62297_62801_+	peptide deformylase	A0A0E3FIY1	Synechococcus_phage	1.4e-13	35.8
WP_011486443.1\|62832_63819_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.9e-07	38.9
WP_011486444.1\|63932_64574_+	LysE family translocator	NA	NA	NA	NA
WP_007179712.1\|64678_65536_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_2

740634 : 800066

Escherichia_phage(18.18%)

transposase,integrase

attL 785365:785380|attR 800657:800672

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007178983.1\|740634_741546_+	GDP-mannose 4,6-dehydratase	E5ES47	Bathycoccus_sp._RCC1105_virus	4.3e-08	25.2
WP_011486991.1\|742011_743064_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.3e-85	47.8
WP_011486992.1\|743056_743974_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	7.8e-26	35.7
WP_011486993.1\|743983_744862_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	9.0e-96	60.3
WP_011486994.1\|744858_745410_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.5e-51	59.1
WP_011486995.1\|745406_746237_+	ABC transporter permease	NA	NA	NA	NA
WP_011486996.1\|746226_747573_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_011486997.1\|747569_751904_+	glycosyltransferase	Q854P7	Mycobacterium_phage	5.6e-13	43.5
WP_011486998.1\|752027_753653_+	hypothetical protein	NA	NA	NA	NA
WP_148222975.1\|753757_754723_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_038456920.1\|754880_756461_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.9e-121	46.6
WP_011488195.1\|756524_756863_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085953601.1\|756859_757237_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011487002.1\|757691_758519_+	hypothetical protein	NA	NA	NA	NA
WP_148222894.1\|758830_761104_+	hypothetical protein	NA	NA	NA	NA
WP_011487004.1\|761172_761598_-	GtrA family protein	NA	NA	NA	NA
WP_011487005.1\|761594_762878_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011487006.1\|762892_763831_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_011487007.1\|763947_765660_-	hypothetical protein	NA	NA	NA	NA
WP_011487008.1\|765673_766414_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011487009.1\|766410_767727_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011487010.1\|767730_769155_-	UbiA family prenyltransferase	NA	NA	NA	NA
WP_011487011.1\|769501_770347_+	glycosyltransferase	NA	NA	NA	NA
WP_011487012.1\|770343_771300_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011487013.1\|771308_772331_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011487014.1\|772343_774221_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_011487015.1\|774801_775914_-	acyltransferase	NA	NA	NA	NA
WP_011487016.1\|776445_778044_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-150	54.1
WP_011487017.1\|778095_778443_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.3e-33	62.9
WP_011487018.1\|778439_778835_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_158340926.1\|779264_780305_+	methyltransferase	NA	NA	NA	NA
WP_085953577.1\|782521_783704_+\|transposase	IS3-like element ISBxe2 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.7e-53	37.0
WP_038456906.1\|783941_785270_-	putative sugar O-methyltransferase	NA	NA	NA	NA
785365:785380	attL	NA	NA	NA	NA
WP_011487026.1\|788687_789713_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_158340923.1\|791138_791297_-	hypothetical protein	NA	NA	NA	NA
WP_011487035.1\|794357_795872_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011487036.1\|795868_796720_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.7e-30	33.7
WP_011487039.1\|798590_798959_-	hypothetical protein	NA	NA	NA	NA
WP_011487040.1\|798968_800066_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
800657:800672	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1515674 : 1521827

Bradyrhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011487610.1\|1515674_1516250_+	hypothetical protein	A0A1X9SGP3	Bradyrhizobium_phage	6.2e-05	35.4
WP_011487611.1\|1516246_1517353_+	hypothetical protein	C5IHL2	Burkholderia_virus	4.1e-29	50.7
WP_011487612.1\|1517349_1517574_+	hypothetical protein	NA	NA	NA	NA
WP_011487613.1\|1517573_1517990_+	hypothetical protein	NA	NA	NA	NA
WP_011487614.1\|1517986_1518253_+	hypothetical protein	NA	NA	NA	NA
WP_038456576.1\|1518249_1518450_+	hypothetical protein	NA	NA	NA	NA
WP_011487615.1\|1518446_1518740_+	hypothetical protein	NA	NA	NA	NA
WP_049782226.1\|1519126_1519432_+	hypothetical protein	T1SA23	Salmonella_phage	3.8e-25	59.6
WP_085953603.1\|1519484_1519694_+	hypothetical protein	NA	NA	NA	NA
WP_038456573.1\|1519752_1520067_+	hypothetical protein	A2I2Y8	Vibrio_virus	1.3e-09	38.7
WP_038456571.1\|1520069_1520387_+	hypothetical protein	NA	NA	NA	NA
WP_148222917.1\|1520383_1520737_+	hypothetical protein	NA	NA	NA	NA
WP_049782103.1\|1520730_1521201_+	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	1.4e-07	45.8
WP_049782104.1\|1521404_1521827_+	hypothetical protein	A0A173GFA2	Erwinia_phage	2.1e-18	37.3

DBSCAN-SWA_4

1525267 : 1546202

Shigella_phage(21.43%)

terminase,tail,portal,capsid,plate,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011487627.1\|1525267_1527370_+\|terminase	phage terminase large subunit family protein	A0A1U8QQD3	Salmonella_virus	4.2e-75	29.7
WP_085953604.1\|1527408_1527642_+	hypothetical protein	NA	NA	NA	NA
WP_011487629.1\|1527641_1529297_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	3.0e-76	34.8
WP_011487630.1\|1529293_1530175_+	S49 family peptidase	A0A1I9KF73	Aeromonas_phage	3.5e-55	38.3
WP_011487631.1\|1530200_1530806_+	hypothetical protein	NA	NA	NA	NA
WP_011487632.1\|1530846_1531503_+\|head	head decoration protein	NA	NA	NA	NA
WP_011487633.1\|1531579_1532617_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	5.5e-60	37.0
WP_011487634.1\|1532620_1532971_+	hypothetical protein	NA	NA	NA	NA
WP_148222918.1\|1532990_1533572_+	hypothetical protein	NA	NA	NA	NA
WP_011487636.1\|1533581_1533782_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_011487637.1\|1533778_1535275_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	3.1e-112	47.6
WP_148222919.1\|1535435_1535879_+	hypothetical protein	Q6J1P3	Burkholderia_virus	4.1e-12	56.5
WP_011487639.1\|1535942_1536311_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_011487640.1\|1536314_1536875_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_011487641.1\|1537040_1538765_+	hypothetical protein	Q4L1H3	Burkholderia_phage	1.3e-13	29.6
WP_011487642.1\|1538761_1540189_+	DNA circularization N-terminal domain-containing protein	U5P4I0	Shigella_phage	3.9e-24	27.7
WP_011487643.1\|1540191_1541265_+\|tail	phage tail protein	U5P0H6	Shigella_phage	1.8e-45	35.9
WP_011487644.1\|1541297_1541825_+\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	1.2e-26	46.5
WP_011487645.1\|1541828_1542278_+	phage GP46 family protein	A0A2P9JZK5	Alteromonadaceae_phage	4.9e-21	43.8
WP_011487646.1\|1542279_1543440_+\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	8.4e-33	30.3
WP_011487647.1\|1543446_1544094_+	DUF2313 domain-containing protein	O22003	Shigella_phage	5.0e-19	32.5
WP_011487648.1\|1544090_1545158_+	hypothetical protein	NA	NA	NA	NA
WP_148222980.1\|1545506_1546202_+	hypothetical protein	A9YX14	Burkholderia_phage	4.0e-46	53.6

DBSCAN-SWA_5

2074974 : 2123317

Stx2-converting_phage(11.11%)

transposase,integrase

attL 2092523:2092538|attR 2120788:2120803

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011488053.1\|2074974_2076549_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-131	54.2
WP_011488054.1\|2076579_2076924_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	69.6
WP_011488055.1\|2076920_2077349_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	4.5e-08	47.5
WP_038458019.1\|2078972_2079254_+	hypothetical protein	NA	NA	NA	NA
WP_081435505.1\|2079921_2080155_+	DUF3460 family protein	NA	NA	NA	NA
WP_011488060.1\|2080353_2081583_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_049782139.1\|2082024_2082258_-	hypothetical protein	NA	NA	NA	NA
WP_049782140.1\|2082232_2082520_-	hypothetical protein	NA	NA	NA	NA
WP_011488063.1\|2082782_2083220_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	1.7e-10	34.4
WP_011488064.1\|2083235_2083649_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011488065.1\|2083739_2084297_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011488066.1\|2084506_2085019_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_011488068.1\|2086225_2086690_+	hypothetical protein	NA	NA	NA	NA
WP_011488069.1\|2086699_2087392_+	protein mobD	NA	NA	NA	NA
WP_011488070.1\|2087384_2088158_+	hypothetical protein	NA	NA	NA	NA
WP_081435506.1\|2088058_2088304_-	hypothetical protein	NA	NA	NA	NA
WP_038456320.1\|2088388_2090629_-	ParB N-terminal domain-containing protein	A0A1C9EHW0	Gordonia_phage	4.8e-08	30.8
WP_011488072.1\|2090758_2091592_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	2.1e-46	38.6
WP_148311793.1\|2091963_2093670_+	hypothetical protein	NA	NA	NA	NA
2092523:2092538	attL	NA	NA	NA	NA
WP_148222986.1\|2093872_2096965_-	SIR2 family protein	NA	NA	NA	NA
WP_011488075.1\|2097538_2097829_+	hypothetical protein	NA	NA	NA	NA
WP_011488076.1\|2097830_2098151_+	helix-turn-helix transcriptional regulator	A0A1B0T6A7	Bacillus_phage	1.1e-06	34.4
WP_038456316.1\|2098150_2099005_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_011488078.1\|2099001_2099796_+	hypothetical protein	NA	NA	NA	NA
WP_049782142.1\|2099792_2100884_+	ATP-binding protein	A0A249XNQ1	Brevibacterium_phage	5.8e-36	37.1
WP_011488080.1\|2100897_2101818_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A0A0V4I6	uncultured_virus	3.0e-09	43.1
WP_167540865.1\|2102354_2102585_-	hypothetical protein	NA	NA	NA	NA
WP_011488082.1\|2102513_2104355_+	AAA family ATPase	NA	NA	NA	NA
WP_148222987.1\|2104351_2105956_+	ATP-dependent helicase	G3MA40	Bacillus_virus	2.4e-14	25.6
WP_011487035.1\|2106074_2107589_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011487036.1\|2107585_2108437_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.7e-30	33.7
WP_081435507.1\|2108533_2109004_+	ATP-binding domain-containing protein	A7KV33	Bacillus_phage	4.0e-10	50.8
WP_038456309.1\|2109543_2109990_+	hypothetical protein	NA	NA	NA	NA
WP_011488086.1\|2111073_2112312_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011487049.1\|2112953_2114534_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	5.6e-56	31.9
WP_011487048.1\|2114623_2114977_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.2e-16	37.6
WP_011490266.1\|2114976_2115444_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_085953587.1\|2115531_2116705_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.8e-74	46.0
WP_085953580.1\|2116977_2118152_-\|transposase	IS3-like element ISBxe1 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.3e-62	43.0
WP_011488088.1\|2118671_2119910_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	7.8e-61	35.6
WP_011488089.1\|2120815_2123317_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.0e-68	32.6
2120788:2120803	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3993835 : 4003405

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011489636.1\|3993835_3996133_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.2e-169	41.6
WP_006050100.1\|3996129_3996444_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	5.8e-13	44.6
WP_007180614.1\|3996994_3997201_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.4e-23	81.8
WP_011489638.1\|3997476_3998733_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.3e-12	64.8
WP_011489639.1\|3999066_3999636_+	pseudouridine synthase	NA	NA	NA	NA
WP_011489640.1\|4000092_4000287_+	hypothetical protein	NA	NA	NA	NA
WP_011489641.1\|4000432_4000939_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	9.4e-13	39.2
WP_011489642.1\|4001299_4003405_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.9e-61	26.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_007952

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1589580 : 1638052

Lysinibacillus_phage(16.67%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007177083.1\|1589580_1590483_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011491684.1\|1590490_1591489_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011491685.1\|1591592_1592528_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011491687.1\|1593163_1593679_+	hypothetical protein	NA	NA	NA	NA
WP_011491688.1\|1593968_1594484_+	hypothetical protein	NA	NA	NA	NA
WP_011491689.1\|1594537_1595068_-	hypothetical protein	NA	NA	NA	NA
WP_193352973.1\|1595064_1595523_-	hypothetical protein	NA	NA	NA	NA
WP_004574636.1\|1595544_1596834_-\|transposase	ISL3-like element ISPpu12 family transposase	A0A2D1GQC1	Lysinibacillus_phage	9.5e-86	40.4
WP_004863699.1\|1596855_1597368_-	signal peptidase II	NA	NA	NA	NA
WP_004574643.1\|1597371_1598268_-	cation transporter	NA	NA	NA	NA
WP_011487781.1\|1598363_1598771_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_011491691.1\|1598852_1599641_-	hypothetical protein	NA	NA	NA	NA
WP_011491692.1\|1599683_1600766_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011491693.1\|1601058_1602453_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_007177093.1\|1602496_1603741_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_011491694.1\|1603762_1604125_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011491695.1\|1604121_1607124_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_011491696.1\|1607113_1607770_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA
WP_035516607.1\|1607831_1608095_+	hypothetical protein	NA	NA	NA	NA
WP_011491697.1\|1608237_1609656_+	MFS transporter	NA	NA	NA	NA
WP_158340992.1\|1609660_1609837_-	hypothetical protein	NA	NA	NA	NA
WP_011491699.1\|1609995_1611171_-	class C beta-lactamase	NA	NA	NA	NA
WP_011491700.1\|1611292_1612978_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.5e-51	29.1
WP_011491701.1\|1612990_1614460_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011491702.1\|1614523_1615111_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_011491703.1\|1615401_1616601_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.3e-12	27.2
WP_148223024.1\|1617121_1617835_+	hypothetical protein	NA	NA	NA	NA
WP_040125368.1\|1617876_1619247_+	hypothetical protein	NA	NA	NA	NA
WP_011491706.1\|1619345_1620347_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011491707.1\|1620790_1622065_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.4e-105	54.8
WP_011491708.1\|1622083_1623055_+	membrane dipeptidase	NA	NA	NA	NA
WP_011491709.1\|1623105_1623642_+	4-vinyl reductase	NA	NA	NA	NA
WP_011491710.1\|1623716_1625780_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_011491711.1\|1625782_1627696_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_011491712.1\|1627700_1628873_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011491713.1\|1628869_1629646_+	drug:proton antiporter	NA	NA	NA	NA
WP_011491714.1\|1629719_1631033_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_011491715.1\|1631069_1632326_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011491716.1\|1632461_1633319_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011491717.1\|1633402_1634278_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_011491718.1\|1634416_1635331_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.2e-34	35.3
WP_011491719.1\|1635502_1637050_+\|holin	choline-sulfatase	A0A2P0VMN7	Tetraselmis_virus	8.9e-06	31.0
WP_011491720.1\|1637101_1638052_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_2

1778792 : 1784945

Lake_Baikal_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011491844.1\|1778792_1780046_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	9.7e-35	38.0
WP_011491845.1\|1780116_1780563_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.1e-49	75.0
WP_011491846.1\|1780590_1780965_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	9.6e-23	50.9
WP_011491847.1\|1780972_1781296_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	2.4e-22	49.1
WP_011491848.1\|1781319_1783194_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.6e-94	41.4
WP_011491849.1\|1783246_1783579_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_011491850.1\|1783808_1784945_+	homocitrate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	8.6e-06	35.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007951

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_007952

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection