CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007912	Saccharophagus degradans 2-40, complete sequence	2 crisprs	WYL,cas3,PD-DExK,csa3,DinG,DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007912_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007912_1

3844998-3845118

Orphan

Consensus_repeat	Method
AAATTTCTTTAACTAGTGCCTGTCTCGATTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007912_1

>merge|NC_007912|1|3844998-3845118|CRISPRCasFinder
AAATTTCTTTAACTAGTGCCTGTCTCGATTATTCTTTCTGTCTCGATTATTCTTTCTTTAACTAGTGCCTGCCCTATAAACAACAACAAAATTTCTTTAACTAGTGCCTGTCTCGATTATT

>NC_007912|1|1|3844998-3845118|CRISPRCasFinder
AAATTTCTTTAACTAGTGCCTGTCTCGATTATT	CTTTCTGTCTCGATTATTCTTTCTTTAACTAGTGCCTGCCCTATAAACAACAACA
AAATTTCTTTAACTAGTGCCTGTCTCGATTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007912.1\|WP_011469486.1\|3842005_3842311_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469487.1\|3842388_3842691_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469492.1\|3845680_3846061_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469498.1\|3864376_3865549_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NC_007912.1\|WP_011469483.1\|3839328_3839889_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469488.1\|3842970_3843342_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469485.1\|3841133_3841454_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469496.1\|3860208_3862818_-\|carbohydrate-binding-protein	unknown	unknown	gnl\|CDD\|271146
NC_007912.1\|WP_011469489.1\|3843361_3843709_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469490.1\|3843870_3844848_+\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469491.1\|3845137_3845497_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469497.1\|3863232_3863736_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_007912.1\|WP_041324789.1\|3839941_3840268_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_041324795.1\|3854852_3855206_+\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469494.1\|3855379_3857548_-\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NC_007912.1\|WP_011469484.1\|3840755_3841082_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469493.1\|3846070_3854359_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|377060
NC_007912.1\|WP_041324793.1\|3841543_3841879_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011469495.1\|3858011_3859946_-\|RICIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|366226
NC_007912.1\|WP_011469499.1\|3866543_3866915_+\|fibronectin-type-III-like-domain-contianing-protein	unknown	unknown	gnl\|CDD\|379550

Protein	Function_ID	Function_description	E-value
NC_007912.1\|WP_011469498.1\|3864376_3865549_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.27203e-20
NC_007912.1\|WP_011469494.1\|3855379_3857548_-\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.84862e-52
NC_007912.1\|WP_011469493.1\|3846070_3854359_-\|VCBS-repeat-containing-protein	gnl\|CDD\|377060	pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein.	2.188e-14
NC_007912.1\|WP_011469496.1\|3860208_3862818_-\|carbohydrate-binding-protein	gnl\|CDD\|271146	cd04080, CBM6_cellulase-like, Carbohydrate Binding Module 6 (CBM6); appended to glycoside hydrolase (GH) domains, including GH5 (cellulase). This family includes carbohydrate binding module 6 (CBM6) domains that are appended to several glycoside hydrolase (GH) domains, including GH5 (cellulase) and GH16, as well as to coagulation factor 5/8 carbohydrate-binding domains. CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. The CBM6s are appended to GHs that display a diversity of substrate specificities. For some members of this family information is available about the specific substrates of the appended GH domains. It includes the CBM domains of various enzymes involved in cell wall degradation including, an extracellular beta-1,3-glucanase from Lysobacter enzymogenes encoded by the gluC gene (its catalytic domain belongs to the GH16 family), the tandem CBM domains of Pseudomonas sp. PE2 beta-1,3(4)-glucanase A (its catalytic domain also belongs to GH16), and a family 6 CBM from Cellvibrio mixtus Endoglucanase 5A (CmCBM6) which binds to the beta1,4-beta1,3-mixed linked glucans lichenan, and barley beta-glucan, cello-oligosaccharides, insoluble forms of cellulose, the beta1,3-glucan laminarin, and xylooligosaccharides, and the CBM6 of Fibrobacter succinogenes S85 XynD xylanase, appended to a GH10 domain, and Cellvibrio japonicas Cel5G appended to a GH5 (cellulase) domain. GH5 (cellulase) family includes enzymes with several known activities such as endoglucanase, beta-mannanase, and xylanase, which are involved in the degradation of cellulose and xylans. GH16 family includes enzymes with lichenase, xyloglucan endotransglycosylase (XET), and beta-agarase activities. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. For CmCBM6 it has been shown that these two binding sites have different ligand specificities.	1.39135e-39
NC_007912.1\|WP_011469495.1\|3858011_3859946_-\|RICIN-domain-containing-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	3.44154e-17
NC_007912.1\|WP_011469497.1\|3863232_3863736_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.59246e-21
NC_007912.1\|WP_011469499.1\|3866543_3866915_+\|fibronectin-type-III-like-domain-contianing-protein	gnl\|CDD\|379550	pfam14310, Fn3-like, Fibronectin type III-like domain. This domain has a fibronectin type III-like structure. It is often found in association with pfam00933 and pfam01915. Its function is unknown.	2.8638e-24

>NC_007912.1|WP_011469490.1|3843870_3844848_+|hypothetical-protein
MPKPRKMQVCLDATPYYHCTSRCVRRAFLCGVDKITGANYEHRRQWVEERIHLLSQVFCIDICAYAVMSNHLHIVLHINAAKAEQLSFSDIADRWHAIYKGTLLTQKFAAGLPLSKVELDAVAEKLEQWREQLTSISWFMRALNEPIARQANAEDHCTGSFWESRFSSQALLDEKALAACLAYVDLNPVRAKMADTPENSDFTSIKLRAEQLKEKKSQPNCLYPFVGNPREPMPQGLPFKLNDYLNLVDWTGRILRKNKCGTIDKNLPPILHRIGIEANEWLTLTAQFEQKTSTFAGAENKIRIAAELLGYKKPPGIANAKALFA
>NC_007912.1|WP_011469489.1|3843361_3843709_-|hypothetical-protein
MKVFFLVLLACFSNWCFAGNLVPIKAKVTRVSGHTSSFTTYTESEKGVFFIFMEDLPNACGDGMGRIAISHEHPLFETVVSVALLARTTGEPIEMAYIDKCTVRENSWDFGSFTY
>NC_007912.1|WP_011469488.1|3842970_3843342_-|hypothetical-protein
MKSAIVEPVFNLKGSCMLKNILFLFVMVSPVCGAGENYVSGQITSLKGAGTNPAIRIGDRLVPGNCDGGTYGWLQFKGSTQEQQWLYSTALAMALSKKKVTVYTNNDGTSCKISNIQITSGLN
>NC_007912.1|WP_011469487.1|3842388_3842691_-|hypothetical-protein
MKFLCVMVLMMFPLEVYAVDCAAGKVKRLQPEAGGNILIFIENQNWHLLGNSKDPGVKEMFALALAAQAQDKPVIIRFLGAFDCSAYETSTPAYMLRLDA
>NC_007912.1|WP_011469486.1|3842005_3842311_-|hypothetical-protein
MFSVVGNVFAENKWHQSTIKTIYPLANGDFVLIFNTDSLLCPVDNTGKYHYVRVGQNDVTSEGARNMLSVALAAAAMGKEVDINFDITDERCFINRLFITF
>NC_007912.1|WP_041324793.1|3841543_3841879_-|hypothetical-protein
MNKLLFICAFLVLSSTAKALDAQKKGDWISVGVPESFHQGTEGVLYLHGDNHGACAGVTPSYIRLNMSHSHFKEFYSLLLYTAAQKQSLDCVVDGGCGGNEVWVKYCRGKF
>NC_007912.1|WP_011469485.1|3841133_3841454_-|hypothetical-protein
MWKIVVALLGCVLSVNAFSAADCDGVPVAVKMGEFGGQEPYAIVRVNGYDYRLGLPSDDAMKMRFSLIQTAMLAGYKVRIRFWAADTCPQASADRLIPNSVQLVKS
>NC_007912.1|WP_011469484.1|3840755_3841082_-|hypothetical-protein
MKILFLIMFLVFSNVVNADQTSWAKIRQMNYSATADFLFFITTGKWEVKSGDNITCEPTYIQVTKSVLGRDKMLSIGLAAHMAGKEVMFHGECGSNINYFEATYIVIR
>NC_007912.1|WP_041324789.1|3839941_3840268_-|hypothetical-protein
MKYLIALFVTLFATSSFAGWSGSTAITLIYPHSKNNTDGTVYVRFEKMINPADCTYDTLIALKKSNKLASEIYSMILSASYAGKELSYYVLDCDDHGYPVMEHVKLSL
>NC_007912.1|WP_011469483.1|3839328_3839889_-|hypothetical-protein
MNVCRALGFVFLVVLTSCAQHSYRNNEVIVNSTSSALSFEGRGAGAGMMLMSSMGPAGIAIGVAIDVGIAKEIEKAVNTTSVTFEQLLQRQLGMGCAKFDSKLSSTQLETVSVEKYGFRVSKGDSESVVAWFSIALNNNAEATINFPADFDELDTALPSIPFNVVKSDGEAAVQLWRNSLAVTCGG
>NC_007912.1|WP_011469491.1|3845137_3845497_-|hypothetical-protein
MKYIILVALMGLSISCLAQSGNAWVDADVAEVLVHDNGESDYAGRVHVKMVDGMSWQPDCIGDSTYYNKSFVIDLSRAPGQYQYSLLLAAKLAGKKITVQVNQRCISGIALVRNVSLVE
>NC_007912.1|WP_011469492.1|3845680_3846061_-|hypothetical-protein
MKSFILILSFFFIVGCHYESNDGREFEAYINAGLTLIEEGSSSNVEAKIYSVELVEEGVFPFQPSDMLQTVTLVYYDLKSKNDKYIDRYIVTFKLDESEMSRGRVVKEKVPLIVAKNFFTKLDTQQ
>NC_007912.1|WP_011469493.1|3846070_3854359_-|VCBS-repeat-containing-protein
MIAFTKKQLGAFVRITVLTALCAICTPVFAGYLSSDETHSYDGSFNLVIDPAAWVENEDTDEKKTLSLYEARADLVANDPVFSEEILIVPELSKGTLNYSIFKSENGTYKYILKVCSDYMETTSGGLSYPRTICSATDSNAQNDFQSTVVKVDIPLDDSPDERLDLSDYDIYYGDFNGDGVSGDIYFYGRDVFVLIAGDISIPLNIQGPPSFVLNRLPSNFGYSQPELLDLDEGYLGSFTRATLNADYFSGDMNGDREEDYFIRGYQAGEPALTALQTEIGFPQFIVANIDTETRFDPSDRRNTIALQDYNLDGRMDLVLLSGVGGYVVDVIYSNSGGVVDEGYYTANSIDEMLSVNTRTANAFGTLGGEFKVSETGAATYTISVFTPAGTAGVTPSVSFSYSSQAANGIMGTGWSLNASSAITRCRQTKFIDGVSRPLTFTNEDRFCFDGMRLLKISGVYGESGSKYRTEIDSQVVVTLHGNASSSGSYFTAVKKDGTIQYFGRVPNEFIDSQASQIFPGGKVLTWGLSRSEDSIGNAIKYYYIQENGNNFRVDRIEYAFGSGGAANTVISFGYEGRPDVQKGYLAGIYTERSVRLSSVNVDNNVTSNKNVRNYHIYYNRDTSPVAEKDRSLVTAIQECVGTSCKEATKFSWGVVDGDLLAQAGGSPDIDLRLGSSISPTTQFQPIDINGDGELDVAWLVLTNNSSDVIGKNYDHELHYAISVFGTLTKQGFVDENGDLDGMVVEFDENERSFVGLQSLDYNADGHADVAIYRSRGAKGWNIHLAKPSKNGNWRLSSNSIHTGILDKEAIFIDVNGDGLTDALTESRVYLMEQNPEEEITSDRYYRFKPNGEELVYSGVERLERRDDMPLVCWSCPYGASYLTDDQEFRFHGFGDFNGDGRLDLLVGDYIERQERRESNGKILDVSYMREKLQIVVATDSGFESWLDLGVRVSGDYDHEDSDYFPESGISVGDINADGLTDVLYHNNGQVEVYLSRGVGFNSDPDSILALPEDKVIRLLDVNGDGLLDLVSESKSDSTTKFNVYHWDRTADQFVSESKQKVIWKGGANYVFSDVNGDSHTDLITFYDERLSIHYFESSHESFESIKSIDNAGAVTNVTYEPISTSGNYSALNLKTAVEEEEFLSCVVDSWQTGTYRVCNTFDVDEVEDFYRAVNEGLNIETQNKIQTAAPILQYAAPYYVVTQVSSPAPSVQITNDPLSPSGNKGIRSIDQYSRAAVSYFYGEAKMQAGGRGFLGFHRLVTKDEQTGIETATTYRQDFPYIGSPLSTIVYAPDGGVLSEAYNVYSSKKFSAGAGAAKISKTSVGVSAKTSGTQVLGPIVPYLSATYQLTYETQSGPNQNLSVVSLSEGVNALYECTSNTQGDCPQFTAASSLQKIANQTVTLNDVDINNNPTSSVQHLIGEDVHITTTTLNEYGTGRTFNLHGETFSFGDLGRLTKSTVTHDRNGETKTEFVEFDYYTSSDGLGHPGLLKSETSLPYQEGEEALISEILTTTYEYDGLGNVSTKAVSGWNGFSDELEVRETVTRFDSTGRFVESVRDPLGHEFDIVESRNEYGAPKSIKGINGVNTLKYYDVWGRETREEIVSLGRWTATQYKNCNSSPIACPSSAKTVVLNYDNGAGYSKVKAASFMDIAGREVRTTTLGLNGYVNVDKQYDVLGRLVRVSNPYFADEGPGYWTRTYFDLMGRATLVLEPGGATTRLSYSGNTTTYINALNQHKIEVKNAAGELKSIQDTIGSTLIYEYGVKGELLSTELLSAGQGPNNAGDIEISYGTIEGLCRQPTSDFQVVICYDGLGRKTAMWDPNKGFWQYAYNAFGELIRQTSANNTYVSNQYDLLGRPVSRVDYFADSTIEGNTRWYYDEYDNLGMQKVDNALLKPTAVVYTKGRLYEPGDPTDYLVKTLYDEFGQQVSTTQQIGDGDIYETRTKYDYTNGRVLAQYNALGDFVLRNGEAIESGVRNEYNEDGFLTQIYNIEDNALLYEVTQMDARGQLEQAKLANLVTINKSYNVASGLLNSQSANSGMYAQSITYKWDDVGNLIRRYNTSGALGTESHWRESYCYDRLNRLVKTDLLQNTDYQYGIHHAPDYTCPSSDRTHDVKYDFRGNITYKQDVGTYKYDLLSGGMRAGPNAVTSTIESNGTINYRYDANGNMLGDGARVFDYTTYDMVSKITKGQTEINFSYGPDRKRYYRKDEKKSAGGAVLSTEETWYLGNVEKVKLANGNIKWRRHLMGGTLHTYYTDADGNEITSDGQSSLVSTVDVHYILKDHLGSTDIILDASGTATSLMSFDAWGFRRSADSLENLSLSAAALFNSSITPKGFTGHEMLDSVGVIHMNGRIYYPRLGRFLQADPHVQAPDNTQSLNRYSYVMNNPLNATDPSGYFAVTLAAIVMTAMEVHIAIQIAVVAVMTTLQAYAAGASPGDAIGAGIVSAWSSIAFHAVGNHFNALGRTNEALNDMSITMFGRANSAFHSFGGNLLRGSQIAKQITAHAVIGGVTADLQGGKFGHGFISAGLTKGVMGSIGPNFGNVFARTSIAALVGGTTSRISGGKFANGAITAALGHLFNAEGGAGRTAKRAYYRVAMNVGGWFNDYPNARKAFNHYLDGNGAAVVYSGESELWTEFGVLRGIDHNIDVFYYEVENIINSLAPGDSASYAGVYSSHIDGASVSEDWYYTAGTTTLQTQVNLTIDLDSGGIPKVSGSVTHLWWDIYDWDRGKSTVVPTGKRLEDTTFQGLGDTFTQYSVKYEQW
>NC_007912.1|WP_041324795.1|3854852_3855206_+|hypothetical-protein
MNKYTCKLIFIFCAVVCLPVVANTTCTGTVQFAGLNPASGLLLVNYGYGVQYHCKVGETWNDVPAESCRAFYSMLLSAQLAGKRLQASYNDDFTCSRENLGDNEPTKHVLYRAIIVD
>NC_007912.1|WP_011469494.1|3855379_3857548_-|family-16-glycosylhydrolase
MKKVFSLIIGLSLSLPVWAGWERQWIDTFDGDSVDWTNWTAQVEANYNNEVQCYTADETSANKNYDVSDGTLKIIARKQSVECAGLGGQNKTWTSGRLNSKDKQEFLYGRIESRIRFHNLEGGTWPAFWMLENRISETPRKYDDDYEQWPNPGAGEIDVWEWFSNGPNIYIINFFNANNCGDRHDYVYPNGGSDVLNWHNYAMEWDANNISFFIDGSLITSFDVSSCPQYKEKMFVLLNLAVGGNLGGTIDPNLSLATLEVDYVGYCTATNANDYASCDETTPAALQGEPSTSWVLSTVNATATLANAAQNSGAIAFETSAFGENASDPMIYQAGQNITAGKEYTLAFDVRSNTAGRAFRAFVAASAEASQGILDQEVVVANADAWQFVSLNFTSEQTFNDAVIAFQSGTAALGNGELLFKNIVLTEHSTLYSTTVVTNAGGSINPPGPTVKTVSGYSSHFTITANVTHAIGDVFIDGVSVGPVAEYTFDNIQGDHEIEVQFVALPPPEGTEILTPVAATASSSLSVASRAIDGDYATRWESRHGIEATWLELDLGTAVDLHSILINWEAANAKAYTLEGSNDGENWTVLASVTNGTFGDRADELSLTGSYSHLRINATERSAGNDWGYSIWDIVLYAYTQDQNASSSSSSSSNSTTSSSSSSSTSSSSSSSSSSSSSSSSSSGGSEPASSGSGRMDGVVFLFLMVLFGLVTQRVVLAKLVS
>NC_007912.1|WP_011469495.1|3858011_3859946_-|RICIN-domain-containing-protein
MIKINSNQSFLVSMLAPVVLAFSAITYAAEPASDRIYMGAFTDRNWSESNPCGDKQTEHWEWNQNSQWFGNTNAYFGKIFPEWFLPDGAPNIYQNWKVEVERIKAQGRIPYINWEAHGQTQDGECWHGGNGQNARADRDVISEINAGQHDDLIENLAIGLREEKTKIVIDLFHEMNGAWYDWSPSCKHSAGWPAWRQAFKHVVDIFRANNAYNVEFGTSVWFGADICGNGIQDTVDNINIPGYLDWIGIDIYGDVYGNSFSNLMDPWYSALAGTGLPIVVGEMGVALSDDDEAKRTWMTEFRDSLVNQYPRVKAFNWFDIDKGWVNNEANYHIESGNAGPHFNQLMTDPRFVGSFGSVFIKNKANNKCLAIAANSNSNTANVEAADCNGAANQVFTVTDLGDFKLELRALNSDKCVDVAGAASGDGANIQQYSCNASKAQVWVMNVINWSTMEVELSAENSEKCLDLDMASSNVQQWQCYSNINQRWFLKTTPNAPVQLDPPSISGIYELKNTATNRCLDIAGGSPDTEANAQTWSCNGSSAQRFKIVDLGGYRLLLRPLSNTNVCIDVSDVSQANGANVHQWTCNGGNNQTWKVDVKNWATMEVTLSAAHSNKCLDEDQGSNNVQQWACSNANNQIWKLDVVN
>NC_007912.1|WP_011469496.1|3860208_3862818_-|carbohydrate-binding-protein
MREKLLRALLTSAKFFGASLLLLSLFNLTACGGGSSGTKPVVEEPQPEPQPEPEPEPEPEPEPEPEPEPQPEPEPEPDFSALHTDGTKWVNANGDQVLLKGVNLGNWLLQEFWMMEQGSEDVNDQCSLEAVFDDRFGFAERERLMDLFRDNWINDRDWDIIASFGMNVIRLPFIWNLIEDENNPMTLRDDAWQYIDYAIEQAEARDMYVILDLHGAVGAQGWEHHSGCAELNEYWGSEAYQERTRWLWQQVATRYADRDAVAAYGVLNEPWGTTPENLAVEAIELFDAIREVDADKIIILPGHHSGIHAYPNPATVNQTNVAYEMHFYPGIFGWGEIGYDVNRDWLTCGPTGTSGVCEWDARLDALDSPFLIGEFQPWTGLGPELGAQITRATYDTYASFDWASTAWSYKIITSGGGQGGGTWGMVTNERGLGLLAKADTWACAGWDSSFANACGVSRTGFTPDREGEQTYYLVIKFGACCEGNLDATLDSISIIDDVTGEEIIVNGGFGAGTGWTEWYESAMPIIDYNYTGAGVPTGSDGAVLRMSGAAAINGGVYQAITLDSSKSYSFSGVFKDNGSASAWAEIFLVQSQPVDGSDVLAEGPFAAVDFLTAPIEEIENLFEAFGTTPYDIHEEMRAAMTAETAPTLFDLPGAPTGVMLAEDAGAATISWTASGDANVTGYNVYRSTISGNSYTLLAENVTATTFVDSTIDGEQTFYYTVTAVTDTAESYRSQEVATTFVAVHLPGKVEAEAHSDMMGLQTENTTDTGGGINIGFIDAGDWFEYEVTIDTAATYNIHYRLASEPGSTGFTVSINDEVLNTVAVPATGGWQTWQTESTTITLPAGEHTLRFDALGGQWNMNWWSVEAVD
>NC_007912.1|WP_011469497.1|3863232_3863736_+|RDD-family-protein
MDNPIEENIHTASGAQPTVRFIGFWLRVLAHVIDSLLVIAATLPPLLMIYGNSYLIGAHTWGVWNILIGYVLPIAAVIVFWRYKSATPGKMVIGAQVVDEKTGLAPSYGQCVIRYVGYIVSFVGLCLGFIWVAFDKKKRAWHDLMAGTVVISKKSKTLADKSKKHQE
>NC_007912.1|WP_011469498.1|3864376_3865549_-|AraC-family-transcriptional-regulator
MGFTIFNFHDVILWMTAMQCLFFACLLVATNEAKLKSTYFLAAFLFAHAFIPVHEMILWGAEFKLIVRDHMPSIYFIGGAAYYLDGPLLYLCIKALVFRDFELKKRDVWHLIPVLMFIVFMLLTFYRLPFEQRDYLIRSEEFVYGNGYVLLEFMAKSMRVVYCVLCLVLISKYKKLRESTHSDVQKMDITWVHMLVLGVLAIVSMEMVLAITKVINLFESFHWAIFEWMGLSGYYMMFILVNLLVFTGIRYFASFEPVHLAEASKKPLQEHMLNPAVAAKISDAMAKDKPFMEPDITLDNLAASLGYPPKDLSMVINRHFGVNFYEFINQYRVDEAKRMLVSEEYKNTTITDIYLMVGFNSKSVFYTFFKKKMGVTPSQYRRSGGDSPAG
>NC_007912.1|WP_011469499.1|3866543_3866915_+|fibronectin-type-III-like-domain-contianing-protein
MTLTEKIGQLQLRDWGMCGADKTGGFLNVNFDAVAGNITDDLQRVAVEDIAGSVTRPIRELKGFKKVSLIAGESKTVSFTLHTDALAFHNSDMQRVTEPGDFTLWIAAHAQTGLAAKFEVTVK

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Crispr_ID: NC_007912_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007912_2

4586786-4586889

Orphan

Consensus_repeat	Method
GAATAATCAAGACAGTCACTAGTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007912_2

>merge|NC_007912|2|4586786-4586889|CRISPRCasFinder
GAATAATCAAGACAGTCACTAGTTAAATAAATTTCTCAAATTTCAGGAAGTGTCTATTTGGGAACTCGAAATAGTACGAATAATCAAGACAGGCACTAGTTAAA

>NC_007912|2|2|4586786-4586889|CRISPRCasFinder
GAATAATCAAGACAGTCACTAGTTAAA	TAAATTTCTCAAATTTCAGGAAGTGTCTATTTGGGAACTCGAAATAGTAC
GAATAATCAAGACAGGCACTAGTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007912.1\|WP_011470090.1\|4593854_4594895_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237007
NC_007912.1\|WP_143710925.1\|4585620_4586199_+\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011470082.1\|4579872_4583433_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|350117
NC_007912.1\|WP_011470083.1\|4583853_4585011_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NC_007912.1\|WP_011470078.1\|4573413_4574667_-\|DUF3526-domain-containing-protein	unknown	unknown	gnl\|CDD\|378798
NC_007912.1\|WP_011470095.1\|4598164_4598551_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|182397
NC_007912.1\|WP_011470093.1\|4596714_4597263_-\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NC_007912.1\|WP_011470094.1\|4597476_4598145_+\|GMP/IMP-nucleotidase	unknown	unknown	gnl\|CDD\|237882
NC_007912.1\|WP_011470089.1\|4592828_4593707_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_007912.1\|WP_011470096.1\|4598645_4599539_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|238278
NC_007912.1\|WP_011470092.1\|4595869_4596685_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NC_007912.1\|WP_011470081.1\|4576850_4578950_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_007912.1\|WP_011470080.1\|4576099_4576849_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_007912.1\|WP_011470087.1\|4588081_4590079_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011470077.1\|4571116_4573219_+\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011470091.1\|4594985_4595204_-\|hypothetical-protein	unknown	unknown	unknown
NC_007912.1\|WP_011470079.1\|4574663_4576100_-\|DUF3526-domain-containing-protein	unknown	unknown	gnl\|CDD\|378798
NC_007912.1\|WP_011470088.1\|4590154_4592647_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|284995
NC_007912.1\|WP_143711015.1\|4567834_4570174_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NC_007912.1\|WP_011470076.1\|4570486_4570876_-\|DUF1761-domain-containing-protein	unknown	unknown	gnl\|CDD\|369962

Protein	Function_ID	Function_description	E-value
NC_007912.1\|WP_011470093.1\|4596714_4597263_-\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	7.23302e-110
NC_007912.1\|WP_011470082.1\|4579872_4583433_-\|endo-1,4-beta-xylanase	gnl\|CDD\|350117	cd09003, GH43_XynD-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis arabinoxylan arabinofuranohydrolase (XynD;BsAXH-m23;BSU18160). This glycosyl hydrolase family 43 (GH43) subgroup includes characterized Bacillus subtilis arabinoxylan arabinofuranohydrolase (AXH), Caldicellulosiruptor sp. Tok7B.1 beta-1,4-xylanase (EC 3.2.1.8) / alpha-L-arabinosidase (EC 3.2.1.55) XynA, Caldicellulosiruptor sp. Rt69B.1 xylanase C (EC 3.2.1.8) XynC, and Caldicellulosiruptor saccharolyticus beta-xylosidase (EC 3.2.1.37)/ alpha-L-arabinofuranosidase (EC 3.2.1.55) XynF. It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. It belongs to the GH43_AXH-like subgroup which includes enzymes that have been annotated as having beta-xylosidase, alpha-L-arabinofuranosidase and arabinoxylan alpha-L-1,3-arabinofuranohydrolase, xylanase (endo-alpha-L-arabinanase) as well as AXH activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Bacillus subtilis AXH (BsAXH-m2,3) has been shown to cleave arabinose units from O-2- or O-3-mono-substituted xylose residues and superposition of its structure with known structures of the GH43 exo-acting enzymes, beta-xylosidase and alpha-L-arabinanase, each in complex with their substrate, reveals a different orientation of the sugar backbone. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	5.65544e-138
NC_007912.1\|WP_011470083.1\|4583853_4585011_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	4.43183e-20
NC_007912.1\|WP_011470078.1\|4573413_4574667_-\|DUF3526-domain-containing-protein	gnl\|CDD\|378798	pfam12040, DUF3526, Domain of unknown function (DUF3526). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.	6.17484e-33
NC_007912.1\|WP_011470095.1\|4598164_4598551_+\|RNA-binding-protein	gnl\|CDD\|182397	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional.	7.24397e-34
NC_007912.1\|WP_011470094.1\|4597476_4598145_+\|GMP/IMP-nucleotidase	gnl\|CDD\|237882	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional.	1.56285e-68
NC_007912.1\|WP_011470089.1\|4592828_4593707_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.99717e-26
NC_007912.1\|WP_011470096.1\|4598645_4599539_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|238278	cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.	2.33869e-110
NC_007912.1\|WP_011470092.1\|4595869_4596685_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	5.76144e-114
NC_007912.1\|WP_011470081.1\|4576850_4578950_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	4.28429e-73
NC_007912.1\|WP_011470080.1\|4576099_4576849_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.8595e-73
NC_007912.1\|WP_011470079.1\|4574663_4576100_-\|DUF3526-domain-containing-protein	gnl\|CDD\|378798	pfam12040, DUF3526, Domain of unknown function (DUF3526). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.	3.06124e-33
NC_007912.1\|WP_011470090.1\|4593854_4594895_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|237007	PRK11873, arsM, arsenite methyltransferase.	9.16975e-52
NC_007912.1\|WP_011470088.1\|4590154_4592647_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	1.45463e-17
NC_007912.1\|WP_143711015.1\|4567834_4570174_+\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	2.91589e-107
NC_007912.1\|WP_011470076.1\|4570486_4570876_-\|DUF1761-domain-containing-protein	gnl\|CDD\|369962	pfam08570, DUF1761, Protein of unknown function (DUF1761). Family of conserved fungal and bacterial membrane proteins with unknown function.	1.12928e-08

>NC_007912.1|WP_143710925.1|4585620_4586199_+|hypothetical-protein
MIHGAIGGVSSVLQGGKFGHGFASAGVTKLLSPSIGNIKAGRIGNISVVQTFTAAALGGSVSKATGGKFANGAITAAYRNLFNQQGEVDRRKKMSVIKESVADYRELISTVMSDLDSGGDPRSVSLIIEGFNGETQDAAFTALLKVDQKLAQIQFQLMNESGAAFIDSVTKNIVKSAGGKLSKPQTTGGGRN
>NC_007912.1|WP_011470083.1|4583853_4585011_-|AraC-family-transcriptional-regulator
MRSPHTKTIVFVLLISSSIVGAGLSFWLATTQHSLLPAPRSQHQWTARTISDSEMGGASHIALKDSDYALDFDYQITPQLAYPYVISVLDFDHKEQASSYVDLSHYQTVSFDIKCQHTNMLSFNVATFDATVTKPSEFPTFKIVSHLFNCENKWQTIEVDLHHIPAPRWWLESFNMPLSDQSYNLKKTRALTFGASRHGPMNLVTNVKVSQLQLNGFKWPVIYAYIVILVVGWLVYAVWALRGFVRRIRQNTLPSHVGLPQAVELLPYRAKEKQQLITFLDAQYRNGELSLAYTASTLGINRNKVNDILKQEFGQTFSSYLNWLRLDEAARLLSSNDNVNISEVALYVGYKNVSYFNRLFKETYQCTPKVYKTKHIKAQSTISQL
>NC_007912.1|WP_011470082.1|4579872_4583433_-|endo-1,4-beta-xylanase
MLRSTQSTPIVKRKISAYVGWGLCVLLSVCTASISWAGNPIVSHVYTADPAARVINGRAYVMVTHDQDNQNDYGGLIDYYLFSSDDMVNWQDHGIVWNSRTDSSWASLAYAPDFIERNGKYYLYFPNGANSIGVAVADSPEGPYTDPLGRPLVDRNTPNANVDWLFDPGVFIDDDGQAFLYFGGGADGTARVIRLNNDMISTSGAAISIDVPNFFEALYMHKRNGIYYLSYSTNPSAGMSIDYMTSNNPTSGFTHRGTILPNPWENNSNNNHQSIIEFNNEWYIFYHNRAVANTRGDSTFSRSINVDRLYYNSDGSIREVNASSIGVPAVRNVNAFSINQAETFDQEGGIETEPSSEGTLNIQMGPGDWVKVANVDFGNGATQFNARVASAIDNSKLEIILGSLSNTPHASLEITNTGGWQNWQTQSTSFNAITGVHDVYLRGTSGHNLNWFEFEGENNGGSSQLTVELEDLASQSLFAPLSVRSDNMANNGAYIEWSNDGSNQILSVASEQSQGQISVPFTLSQASDVEFNVRVNLANGNDDSFYYKLNSNSWQTFNNQATTGWQVLTPNTFTGLSPGNHILTLLRREDGAKLDTLTLVASAGSIQTNNSSSSSTSSSSSTTSSSSTSSSSSSGAAPTGNVTYSINVTNDWQSGYCAELTVTNNTNNALQWQASVSMSDSVDSMWNASWSQSGNILNVSGVEWNNTLQAGQSQSGIGFCATRASSSSSSSTTSSTSGSTSSSSSSGGYTVPSNNFAVNGGVENNLQSWGATAGSVTRSTEQRYSGNASARITNRAENWHGLTFSVGELTQGNLYEVAVWVKLAAGSADTPITLTAKRQNDSDDSTYNEYTGIVTTIANDSEWVLLHGQYTQTGTAFEHFIIESESDSVSFYADEFSIGGEVTPKNEVGFFVGNITTNGNVRNDFTQYWDQLTPENEGKWGSVERTRDVYDWSGLDRAYNYAKQNNIPFKQHTMVWGSQQPNWIDSLSPAEQAAEIEEWIRDYCARYPDTEMIDVVNEATLGHAPANYAASAFGNNWIIRSFELTRQYCPNSILILNDYNVLSWNTQEFIQMATPAVNAGVVDAIGLQAHGLADWSLSDLETKLNQVAALGLPIYISEYDIEKTNDQEQLRVMQTQFPLFYNHPSVKGITIWGYVVGATWRDGTGLLHSNGTPRPALTWLMDYLNR
>NC_007912.1|WP_011470081.1|4576850_4578950_-|TonB-dependent-siderophore-receptor
MKISFNRTTRWCVSSFVTLLLSPTISYAEDAELKPVENITVIGNRQAYQGDFTVLETPQAELVISEEVLKSAGVVDLVQALDLSASVARQNNFGGLWNSFAIRGFVGDENLPSNYLVNGFNAGRGFGGPRDLSGIESVEVLKGPRAALFGRGEPGGTINLVTKRPTFERDGEIVLSAGSFNTYRTDVDWTSPVSDMVAVRLVGFYEDAESYRDTVETSKYGLNPSVAILFSDQTKLNYELEYTQQEIPFDRGVVAMNNELGVIPESRFLGEPSYGPIETGVLGHQLEFQRNLNDDWTALVGFNYRATSLEGLASENGFAVPAEDGTFARFSRSRDYDAVYQVFRAELNGSFNTGNIVHRVIVGVDADTFENDQYSLRDRSTDQSINIFNPVYGQSPADELELADNIDRVETQESSGLFIQDQISLTDNLDVRVGVRIDDYQQKLVNRLNDGVSEYSKTQASPQFGVVYKSSEVLSFYVVYGENFRPLSGATDENGLEPNLSESTELGLKFALNDGDLQGNIAIFDVKQSNIATLDADYNPTAVGEAGSQGIEFDLTGSLTDSLSVWVSYAYTETETKNDFTDAVGWASIPAGSDLLNVPDHQLSTQLVQKTELAGKPVKLIAGVLYVGDRSGEFGNPAFNLPSYTTARVAAQYEISEQIEFSFEINNLFDKSYYANSYGPTWVMPGAPRNFRLSTRFRF
>NC_007912.1|WP_011470080.1|4576099_4576849_-|ABC-transporter-ATP-binding-protein
MTILQAESLNIMRSGKQVLNGISFQVAAGEVYALLGGNGAGKSTTLLSFLGFLSPTSGSVSVNNQDVYKDVASARKAMAYLPESASLYEHLNAYENIDYFMQLAGGAVNRADIETALERVSLAQGARQNKLRGYSKGMRQKVAIALAILRDSSILLLDEPTSGLDPSAIDEFHQLVRDLADSGKAVLMVTHDVYGACQVADKIGLLHSGLLVGEFVAEHARIDTETVHKAFASTVDHASSVRSAMLEQG
>NC_007912.1|WP_011470079.1|4574663_4576100_-|DUF3526-domain-containing-protein
MKQLMLIAHDEWRYWCRSQVVLVATLIFLALILATNFISAARLSSESETRTQHQSEAEQAFLAQPDRHPHRMVHYGHYLFRTPVPLSLFDPGLDAITGQAIFLEGHRQNSLTFSEAGASADFGGLSWLSPALMYQLFAPLMIVLLGHSALVREREASVLSPILALGVSGRKLMAGKAVALTFFTTLLLVPLIIGALLAYFQGERLGALLALIAVYFFYCLVWVVLTLLVSTLVKRRSEVLIVMLSFWCVVSLVLPALAVNIVSSYKASAGKIESDLAMQRDIEKLGNGHNANDPAFLKLRSDLLEQHNVDHVEDLPVNFRGIVALEGERKLTELLNQYAEARMQAEQEQERSLAKYGFISPVLAVTFASRAIAATDLAHYHRFQREAEALRFDFVQGLNRAHAEKLSYQLDIHRYKDEASAQRARVDASNWQVLNSYEFIAADSSQRLARAASSLLNLFLWLLISMVALVWRSGSIKP
>NC_007912.1|WP_011470078.1|4573413_4574667_-|DUF3526-domain-containing-protein
MNKINGLKREIKFLARDRIIWLWLALVFCLSSAAVGFGLAEIAVQNKTIEQLIQADKTDRALQHSKKSDWGSAAYYGLHLTYDAPSDFAFAALGMRDTQPWKHRVKMLALEGQVYERDVGNPSVAILGRFDFAFFAAFVFPLVLMVLLYDLRAHERSAGRINLIEATVAQPRLFWLQRASIRTLAVLLCLIVPLIIGGLIAEVSALKLVLACLAVIAYGVFWGLVCFWFSAWRKQGQLILISLIALWVMTAVLIPSAARLAIDRAVPVPDGADILMLQRETVNDAWDLPRKMTMDAFFERHPQWADYQPVESSFEWQWYYAFQQVGDQRAEPLAMAYREGRKRRAELATWLSVFAPPSLLEQTLQALANTDAHASLEYEERVRAFHAELRAFYYPLFFRNVAFDRELLEDLPNFDVH
>NC_007912.1|WP_011470077.1|4571116_4573219_+|hypothetical-protein
MTKWILIVALALGGVIIWKFAPLTGGGASKSDLLATVPADTAFYVGGNSSEELAEFMRDYSIIPTTPTQMAQWAKMLEEISGSETPAAQFFASLQRQIAATEGSTLTALEKTGGISNTGNYALYLHGAVPVARLTLSDPAAFDAMIEKAVADSNFTYNKATIGAAEARVWRITDADEALQVDLAVAVAGSDLAITFFIGADDEATKKERIGQSKPAKSLASSGEIANIQKQYGFNDAMVTFVHIERIVQGILKPETNSFGKDLQRYLPEDAKAGLAADVTEACRTDYLSLAASMPRLVSGYSALEIKGNTLYNAGDFILELTNESVKTELGKMRGHLPLHTLNASDKLMSFSAGVNMDQLVPAVTALWNQFTQAPYSCEALVEMQNKAKETSPAMLAMAMGMAQGVKGLGVSFYDFKMDEMMMPSSLSFLASVATENPGTLASLTSMIPVPGLNELVIPADGTAVPVPVPMLPPSIEVKAAIKGKHLVVYAGAKAEAEVAKIEQEAITPNGLYAIGLNYRRFGELLELQSNGMFAQGGGQGCIAQQEMKHMMQNLKMDFAVSFDVNNQGLVGHAEASMDKPTTSTTKLPGKYQLAYLDGACNWETAGVETINADGTGSVTEKSNEGECNTYESAYTWTQAGSVVSMTATSDRYRESCDSEWDNNDLSTYECHILNVSETGFQCLFDPGSEDAAIYSYTRM
>NC_007912.1|WP_011470076.1|4570486_4570876_-|DUF1761-domain-containing-protein
MDEITLSVNWLAVAVGAFLSFLMGWLWFSPKFLGKPWAAGVGIDIEAADNKPPAAAMVTQLLGTIMLAWLVGITAVTSSLLTLLLVVITFTLLSASQGLFIKKSIAAILIEQGYVVAMAIIMVVVQGVL
>NC_007912.1|WP_143711015.1|4567834_4570174_+|PKD-domain-containing-protein
MLSAHVAYAYDCDGLATWNASSAYAGSTVVQHSNVAYKANWWTQNQNPASHSGPWQEWTNLGNCDGDGGGNTNQAPSANANGPYAAQLGAAIAFSSAGSSDSDGNIASYNWTFGDGNSSNQASPSHTYGSQGTYAVTLTVTDNEGASSSATTSASVTQGGDPGDCQAPQYSAGTQYAAGDIVANGGNLYQCNIAGWCSSSAAWAYAPGTGAHWQDAWSLTSECDDNGNTNQAPTANANGPYSGSAGISISFSSNGSADSDGTIASYSWNFGDGASSSQANPSHSYMNEGTYQVSLTVTDDDGASATAFTTANVTGNGENQEPVASISAPSSASEGASVNFSSAGSNDPDGSIVSYSWNFGDGTSSQQANPSHTYSSAGSYSVSLTVVDNEGANNVANHSITISGDTGGGTHGDKIIGYFAEWGVYGRNYHVKNIHTSGSADKLTHIVYAFGNVQNGECKIGDSYAAYDKAYSAADSVDGVADTWDDGVLRGNFGQLRRLKAMHPQIKIVWSFGGWTWSGGFGEAAANADHFANSCYDLVFDARWADVFDGIDIDWEYPNDCGLSCDNSGYDGYRVLMQALRNRFGNKLVTAAIGAGESKQNAADYGGAAQYLDFYMLMTYDFFGAFNPQGPTAPHSPLYNYPGMPIEGFSSDHGIQVLKSKGVPAEKILLGIGFYGRGWTNVTQDAPGGSANGAAPGTYEKGIEDYKVLKNTCPATGTIAGTAYAKCGSNWWGYDTPATIDSKMDYAKQQGLGGAFFWELSGDTTDGELIRAIDNGLKN
>NC_007912.1|WP_011470087.1|4588081_4590079_-|hypothetical-protein
MNTKYLLIRLTLLVFAGCGLAYANPDTTTSLKRFESEEVAIEQAEKAQSIIYKINSLAHQLYLEKLKATDIFIEDNPVFGGRTDYVHEILGELEDTRERGGSSDSMDKGAIVQRIGDYLIMLRHGHLYSIHVEKKLEKADSLRLKLGEVGQGTLFNKLFISNNTLIIVGKNNTKKQSEYVFVEFSDNGSFKRKKTYFVEEKVRCSTIRVSYIQCYSSASSQRVIDNKLIIINKNNPYLPVESGNESSVFNLQVTKVDENGAIISRSLLFDRNEIYSSIVDGKYLSIHFLAECSIDQEEFRCSGKTILGGNLDESYITQDAAYFWVSGHRWSPDLSKIKEEDIRYLASSQYGHAAITRSVLYQMPLGDQPVSAIKLTGSPLGGEAFKGTNTHLYFVALYNPNRLRVDFYNNSPGESRFISIPRKLFEPEKIIELPTEHYSRLSYDHHGNKIAIFHDNYVFFSSYIGRTQSSLKVTSIENPTEIRSTVINANFIQLYPLGQGIAVFAYNNQTETNFILTVKLGSDWGKHDELIFPKYIGESERRTIIKAGNYLTNKNGSILTVARTAREDESYSIEGITFEKDDITNMSYIWISPDLNLNLMANVEGKEEIKWNLSPCDGSCLSWDFLSRAIFWENRIFSLLKFEVIEGVRKGNEIEELQRIDIRYD
>NC_007912.1|WP_011470088.1|4590154_4592647_-|coproporphyrinogen-III-oxidase
MYTNRKYREKIQELTKETKNDRLEAMLYARFLLRMLIIVGAVVRNSKCWTVSGIERWESVSNSSENEDKGERILGYSLHDFKKLTDDERFYIGIQYIVKSILDVLSSEASESSVIDLDRLSAIAMESDTAHEDTNGLSHFVFRLAEQVVKLTRFSSDPNYQKSSLIEDDTCFIKNVDGIVSGPFDACCFEKIQRDIDLVRQKGGDELQRAPLWDVGDLDNPDFIHWRSNFVTTFEDLELKLEESGSSVFSSSDKGLYKSLVDGEALARMISATSYVSAENKEVIKDSLARDRYVSALAKIIKNKRNDWNICIGLFARWGDGKTGLLSLLSKNLRNNSTDKNKCYIANFNAWAYQGAESVRAAMAHEIVKTLTTKYYREYANEDHAERNWFMISIEKVFGFVVEIRGVFTNLVCRFILAIKFTRRKSILKLMATSIVVVLSAPFVYSGLSDFIASFFKDWRLINPSDVNYLAAVEASIGVLVSVISLLPHRKVLAQLYTSELRTYLELPSYAKDIGDVPQMSQDLKILCGIQLGAGAREKYTRRMVVIVDDLDRCEPDCIVKVFEAIKLVMDIPNVIVIISMDHRIALSALSENYQSIESYHELGCARSIARDYLGKIINYSICLPPLSSDNVKAYIAHLIEESAAETLNSQSISANGRAKETNVQPEAEQDQSGASQKRSEKDKQKNESKKLEEKSSEVEFVDRDIQRSLADWAIKLGINNPRQIKRLYNSYHMMINIYPGEQIGPKDDGAHTNLALLALMLVEKVNSESSSKVRSELWKYLCDGPTVRLPSVDGDSDLEEVIKIFHGEINGAKREEILAKASQFVLPYC
>NC_007912.1|WP_011470089.1|4592828_4593707_-|AraC-family-transcriptional-regulator
MTASAGFIRLLNAKVDIYHNAKICGNWQINAHHVGRTCFHVVTEGMCLLALPGQADCVLRTGDLVLFPKEIEHTLMPVDPLAGEQQHLPYVQAQHLEGTGLLCASVQLNHGAGRYLLDAIPEVLIIRNNSANAWLSPLTELLRIEHYQQGPLGDVVIQRLCELMFTYAMANCIEDSTVQTGLLALYAHPRLSAAIQAMHDHPAKSWSLEALAQQAAMSRTAFATAFKELSGWTPMQYLTWWRMQLAWHLLADGEPVAIVADKIGYQSEAAFSRAFKSEFKQTAGEVRRGARN
>NC_007912.1|WP_011470090.1|4593854_4594895_+|methyltransferase-domain-containing-protein
MKESVQNYYGEVLAHSDNLQTNACCTGDAPPAYMRDILSKIHDEVSSRYYGCGLVMPEALSGARILDLGSGAGRDCYALSALVGEQGSVVGVDMTPQQLAIANKHRDFHAQAFGFNKPNVTFIEGELEHLDKLDLAPNSFDVIISNCVINLCTDKTAVLKHAWHLLKEGGEFYFSDVYADRRIPTNLSQDPILYGECLSGAYYWNDFINAAKTAGFIDPRLVESSPITIENEQLEQRVGNIKFYSATYRLFKLAGLEPACEDYGQAVIYNGGIAHHPDSFSLDGHHIIEKGRIFPVCGNTFRMLNESRFKQYFTFIGNFDNHFGIFPGCGTAIPFADELSAAANCC
>NC_007912.1|WP_011470091.1|4594985_4595204_-|hypothetical-protein
MNQAQQALLAPTQRTDVIRMKAQLAREIECLERQLARLRMRDDLLDMITLRTYEEMIFSRQELLESLPWDAE
>NC_007912.1|WP_011470092.1|4595869_4596685_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MNLATLLPSIEQLAKQAGEATLAVYKKPELWDVEHKDDCSPLTQADIQSHNIIAEGLAALTPNIPVLSEEDDVPSFEVRSQWQQYWLIDPLDGTKEFINRKGEFTVNIALIQNNKAVLGVVYAPVLDVCYTGAEGIGAFKIDAKGKTPLRVKKLTQGKQTLNIVASRRHGAEEVDRLLETITSKYGEPQLTSMGSSLKLCLVAEGKADIYPRLAPTCEWDTAASQAVVEQAGGVVLDDQFKPMQYNAKPELLNGYFYVIGDQQFDWLALLK
>NC_007912.1|WP_011470093.1|4596714_4597263_-|ADP-compounds-hydrolase-NudE
MPSLPKILQCQQVAQSKLFRVEQLQLQFSNGEQRTYERLAGGKTAAVIIVPMLDNDTVLLIREYGVGVEGYELGLPKGKVDAGETHMEAANRELKEEVGYGAKDLQLMKCLSQSPNYMQHKTQIVLARNLYPERLEGDEPEPLDVVPAKLSELEQWIARDDLTEARSIAALLLARQYLQDLK
>NC_007912.1|WP_011470094.1|4597476_4598145_+|GMP/IMP-nucleotidase
MIDWNNIDTVLLDMDGTLLDLHYDNYFWLTHLPQRYAQIHNTTLEAATASLTEMIESRVGTLQWYCLDHWSELVNMDIPALKREIQHKIAVRPYTEQFLQALRAMGKKVVLITNAHPKGLDLKLEVSQIDRWLDIVISSHEFKTPKEDAAFWQQLSQREAFDPKRTLFIDDTVRILKSAEDFGIAHLVCINQPDSQKPIVRSNTYTDIVHFDEIMPQLNSEK
>NC_007912.1|WP_011470095.1|4598164_4598551_+|RNA-binding-protein
MDKVRIDKWLWAARFFKTRNLAKSAIDGGKIHINGSRVKPSKEVEVGNKLLIRVGWDEMEVLVTALSDKRRGAPEAAKLYQETQQSIDKRTTYAEQRKAIGQSQLQPATKPNTKERRQLQRVKRILSE
>NC_007912.1|WP_011470096.1|4598645_4599539_+|Hsp33-family-molecular-chaperone-HslO
MQQNNDQIQRFIFDATDIRGEIVTLDQSFLAATNHQHLSPWCKSLLGEFLAAVSLLSETLKFDGLLTLQARGDGDIPLIMAETDNLGHVRGIIKPAASAPLETLDLGDAALPDIIGNGVLVMTIDPKIGDRYQGIVPLENGTLAECLSDYFERSEQLATKFLLFSSPEKCAGMLLQALPAQKVKDQAEREDKWNTVVQLAKTVKQEELFELDHATLLYRLFNELECRLFAGKTIQFKCGCSRKRCANAITSLGKQDALELIEQQKKIDINCEFCGTNYTFKRKDIDTLFGEDNQPLH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2157762 : 2169512

Tupanvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011468169.1\|2157762_2160522_-	insulinase family protein	A0A2K9LA15	Tupanvirus	1.4e-17	24.3
WP_011468170.1\|2160655_2161366_-	arginyltransferase	NA	NA	NA	NA
WP_011468171.1\|2161391_2162123_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_011468172.1\|2162254_2163199_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.7e-60	44.0
WP_041325590.1\|2163430_2165761_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.4e-87	49.7
WP_011468174.1\|2165800_2166427_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_011468175.1\|2166431_2167766_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.9e-82	40.4
WP_041325591.1\|2167848_2168220_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.9e-08	35.6
WP_011468177.1\|2168231_2169512_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-97	45.7

DBSCAN-SWA_2

4210402 : 4279153

Bacillus_virus(18.18%)

tRNA,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011469771.1\|4210402_4211767_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_011469772.1\|4211929_4213024_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	1.5e-44	44.6
WP_011469773.1\|4213027_4213477_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_041324850.1\|4213616_4214429_+	CBS domain-containing protein	NA	NA	NA	NA
WP_011469775.1\|4214444_4216010_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_011469776.1\|4216017_4216887_+	hypothetical protein	NA	NA	NA	NA
WP_011469777.1\|4216901_4217879_-	hypothetical protein	NA	NA	NA	NA
WP_011469778.1\|4218143_4218611_+	DUF4399 domain-containing protein	NA	NA	NA	NA
WP_011469779.1\|4218799_4221259_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	6.7e-197	44.9
WP_011469780.1\|4221367_4221880_+	hypothetical protein	NA	NA	NA	NA
WP_011469781.1\|4221881_4222928_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_011469782.1\|4223026_4224232_-	EAL domain-containing protein	NA	NA	NA	NA
WP_143711008.1\|4224563_4225598_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_011469784.1\|4225866_4227771_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_158303892.1\|4228028_4228889_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_011469786.1\|4228965_4229709_-	hypothetical protein	NA	NA	NA	NA
WP_011469787.1\|4229758_4231504_-	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	5.5e-20	34.4
WP_011469788.1\|4232057_4235582_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_011469789.1\|4235683_4238548_+	TonB-dependent receptor	NA	NA	NA	NA
WP_011469790.1\|4238729_4239098_-	YciI family protein	NA	NA	NA	NA
WP_049762687.1\|4239232_4239661_-	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_011469792.1\|4239714_4240569_-	VOC family protein	NA	NA	NA	NA
WP_011469793.1\|4240776_4242039_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_011469794.1\|4242296_4252730_-	tandem-95 repeat protein	A0A2D1GMW8	Marinobacter_phage	1.3e-20	31.5
WP_011469795.1\|4252753_4253983_-	TIGR03032 family protein	NA	NA	NA	NA
WP_011469796.1\|4253975_4255238_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_011469797.1\|4255360_4255891_-\|tail	phage tail protein	A0A218M5J9	Arthrobacter_phage	1.2e-18	38.1
WP_011469798.1\|4255902_4256427_-\|tail	phage tail protein	E3T4R8	Cafeteria_roenbergensis_virus	6.3e-20	37.3
WP_011469799.1\|4256439_4256949_-\|tail	phage tail protein	A0A0U4JXW2	Arthrobacter_phage	3.9e-19	39.2
WP_011469800.1\|4256996_4257296_-	hypothetical protein	NA	NA	NA	NA
WP_011469801.1\|4257311_4257824_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011469802.1\|4258184_4259624_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_158303893.1\|4259728_4261951_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_011469804.1\|4262084_4262612_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_193339789.1\|4262686_4263679_-	lipoyl synthase	NA	NA	NA	NA
WP_011469806.1\|4263760_4264411_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_011469807.1\|4264497_4264770_-	DUF493 domain-containing protein	NA	NA	NA	NA
WP_193339775.1\|4264762_4265932_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.9e-64	39.1
WP_011469809.1\|4266065_4266959_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.1e-19	58.3
WP_011469810.1\|4267001_4268027_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_011469811.1\|4268085_4269231_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_011469812.1\|4269231_4271091_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_011469813.1\|4271106_4271574_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_011469814.1\|4271616_4271961_-	ribosome silencing factor	NA	NA	NA	NA
WP_011469815.1\|4271990_4272653_-	nicotinate-nucleotide adenylyltransferase	G3MA22	Bacillus_virus	1.8e-11	26.1
WP_041324857.1\|4272677_4273946_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.2e-98	49.0
WP_041325965.1\|4274047_4274998_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_011469818.1\|4275053_4276607_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_143710919.1\|4276615_4277413_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011469820.1\|4277570_4278236_+	HAD family phosphatase	NA	NA	NA	NA
WP_011469821.1\|4278256_4279153_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007912

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection