CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_008388	Roseobacter denitrificans OCh 114 plasmid pTB3, complete sequence	1 crisprs	NA	1	0
NC_008387	Roseobacter denitrificans OCh 114 plasmid pTB2, complete sequence	0 crisprs	NA	0	7
NC_008386	Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence	0 crisprs	WYL	0	0
NC_008209	Roseobacter denitrificans OCh 114, complete sequence	1 crisprs	cas3,csa3,DEDDh,RT,WYL	0	1
NC_008389	Roseobacter denitrificans OCh 114 plasmid pTB4, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008388_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008388_1

371-491

Orphan

Consensus_repeat	Method
CAAGATTCGTGTTATCAGTTACCAT	PILER-CR

2 spacers

The CRISPR arrays of NC_008388_1

>merge|NC_008388|1|371-491|PILER-CR
ATTCGTGTTATCAGTTACCATGAGTCGACATTCGTGGTTTTAGTTACCGCAGTCAAGATTCGTGTTATCAGTTACCGAAAGCAGGATTTCAGTTACCAAGATTCGTGTTATCAGTTACCAT

>NC_008388|1|1|371-491|PILER-CR
ATTCGTGTTATCAGTTACCATGAGT	CGACATTCGTGGTTTTAGTTACCGCAGTCAAG
ATTCGTGTTATCAGTTACCGAAAGC	AGGATTTCAGTTACCAAG
ATTCGTGTTATCAGTTACCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008388.1\|WP_011655531.1\|9761_10301_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_008388.1\|WP_044033636.1\|5037_5373_-\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_143090286.1\|7858_8755_+\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_044033634.1\|8865_9456_-\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_148207032.1\|10340_11681_+\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_011655522.1\|616_1168_-\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_044033631.1\|1188_2841_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NC_008388.1\|WP_011655529.1\|5622_7875_+\|hypothetical-protein	unknown	unknown	unknown
NC_008388.1\|WP_011655527.1\|3760_5044_+\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NC_008388.1\|WP_044033632.1\|2840_3119_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008388.1\|WP_011655531.1\|9761_10301_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.49838e-56
NC_008388.1\|WP_011655527.1\|3760_5044_+\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	2.49064e-70
NC_008388.1\|WP_044033631.1\|1188_2841_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	4.97402e-118

>NC_008388.1|WP_011655522.1|616_1168_-|hypothetical-protein
MSDTPASPTPLSDDDLRETLDLLATAVASISDRVDDQTRVLDRVNKTATEARSAAFAAQKQTDPEHYGEIVGATIDGRIGDTLTRVGQMASDLLRASNHTQEVLKKAEDAKADTMRQLWEREQKLDRFKSRLPWIGLCAVVLALVLTVTLPRFLASNASMCAVLGASWTTTTTGVDACVFYQQ
>NC_008388.1|WP_044033631.1|1188_2841_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MRGVMLVFGGLFRFFGRLVFTPIMLGWLIGAMAFGAMLGSLVATPFIFAFFDQTPGESGWQWLVFGPFMFVGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLQRQDGLLIGRNPHTGRLLHYDGPAHLITLAPTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVYVLDPFEVSGHPSAAYNPLDRLTPDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPEKLRALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITSVFLVLPPNRMDAYSRWLRLLVSQALQDVARDAERPQGASDGHSQRLKTPALFMLDEFAALGRLEAVERAMGLMAGYGLQLWPILQDMSQLKDLYGDRANTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQTDSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYFADPEFAGLFTPEA
>NC_008388.1|WP_044033632.1|2840_3119_-|hypothetical-protein
MAETELERAEKRYAQAKARLQALKNREATRQRKLDTRRKVILGGALMDLAERDSSATAMLDRLIRNLSREQDRKAFAEWETPSPAPSDDGAS
>NC_008388.1|WP_011655527.1|3760_5044_+|MobA/MobL-family-protein
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKKGIEETFILTPKDAPDWATDRSRLWNEVEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHVLTSTRKLEPEGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAALERGDQLSAEELDRDPELKLGPAANSMERRAKAMAEREGREYVPVTERGAVVHAARQARAAFREMRERLDIARETYGSEREAGQGRVSAGLAALRAATTKDRNRTPDDFRERLARVVGHSRDQDDTPKPESRNYARERLKEIMEKDAGRDGQSAVQKLDGHSEYGLGEDTGREARKPSVNERLKNVLNKPREKLEIEDERDQEKDQEVEKDRDIDRDPGLSH
>NC_008388.1|WP_044033636.1|5037_5373_-|hypothetical-protein
MNFEPKLEPNVTTEQGLRALAEQGHSVEVLCKTDPERKGPSWYGLWIMRTVGKDGNEKILVTARTRLTQNAIKVREFKTATGVISFLVGVGFSQASIPMKSGETTSHRLAQ
>NC_008388.1|WP_011655529.1|5622_7875_+|hypothetical-protein
MRTAFFGLSLFLFWSQQSIAQENALDIEVLATSQQNYEVDLPIRSGEEIRDLTIYGHTFAECVGSDQATSLGLQLPSQLQPIRYGVLASLGLNLTPEKVSKTVLRRLDSERTFYVAYDLLADDRARHSFHVFERSEPPFTDQDTISTSVLLRFACGYDRRNEDFYLALWKNSFERDGGYDDKISIRYAFSNWSVFGGIQLPNSPSMVDVHGNIILQHLSADIDDYIDGLEKISEYWRYVGRRQLYSWDDFLFLEQVASGPFFEAVDANVVFERPGSPEAETAVQSEFARLDAIAATIVENARTTVSVLESLQSDTRPATEFLDDLPRRKAEAASETASETWQSLHSNLSGLGPDEESALYDRLADYQRTINNRDNRERVSVEEQFERWSGSQKRSFEELRILYDVRVLEREMGQRVQALREEAQQTNFDNRWRLLQRKVDIVGSCFAVLSASGEVSQENITVLRALLNSFEENVRGGVFLLGSTFEVENYRDCALSLELGYEHRLADIQRETLLPFDRAMFLRLNELILARERYLTGLADFDEIPGGLSSHLQTLRRERGLAFALRSMLTPLVYELYWGRTVEASQTFNRTNILLPSATHDLRANEIDVFFPETSSVSTGPNRETLIVQPTFSRRVSAVADERQALAFREVWRERSGSPVRVQIRDLPMPLARCPIFLTDVELGAVQGTVVVALEWDHLCRTAEEAGLPFVDFVSLPYDELSEIDLSEVAHEVGDWIDSQDGQVVHVQID
>NC_008388.1|WP_143090286.1|7858_8755_+|hypothetical-protein
MFRSISIAVVATIGVFERAQADPHLYCAINDTPYCGTPSEAMRAYNELHQRTSIVSDLNFELMEARTDFLRDLIDARTNEFWLSEWLPDQARFIQANITFYQYFKPGSYFDPNSVDPLADSSVTDRFGNAALIHANAELAWGNANVFGSRMGSWVAGGAELLQRSRELYGSITGDGELSSRTRDYFQDMFWSPGEAFSRAFDNDPFDYLINEEIGRFHEFENRFYADQLISQWTSHFESPYSTLGVDYGFDDPGFGVPYYPLDEGYFPDSDLFFDDFYDFPYGIEDDLPDWELELQYL
>NC_008388.1|WP_044033634.1|8865_9456_-|hypothetical-protein
MSERAAYIFGALGAVFGVVVTVTNPDTLENIVRFPQNLSALLQEESDPPFDKGLALVLVEEFLQDQMSGIEEISEETRSKISSHLASKCIERAVTELSEPESNREAASPESSTSAFDQYVSEIVSQDRQGTNLLSMNEALRMCEFEVGLTLGAIGILSLPDVGLTQHVENPSGVLIKEPLSSLFGRDVLGLSEADR
>NC_008388.1|WP_011655531.1|9761_10301_+|recombinase-family-protein
MIIGYARVSTDDQNLDSQTDALSAAGVEKVFADKISGSRRARPELDRMLEQLRDGDVVAVTKYDRLARSLKDLLEIVEAIGERGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTREGLTSARKRGRVGGRPPALSAAQKKEVRRMRDEEQRAIAEIARLFKVSERTVRRA
>NC_008388.1|WP_148207032.1|10340_11681_+|hypothetical-protein
MGAFADVAAFPPRNQMVQKTGTAKGDSFRLCQRTLIERQQIMTTSIDHTLLHDQRVNCTSIMTAMTVGDYIELVDSAYQKRGGLAHQRDALKTTTARRIRSRMVDDIVKGAVLPPVVVGVVANNDFITSIQEDSTPDTVAAISSDYSEALSIIDGMQRTTALLEALDQDRDSVEERPMRVEFWIADTTESLIYRMLVLNTGQVPWNLSRQLQVVYAPLIEEMKGQVDFERVLDTNAGERRSKAGEYAPDNLVELYIAFGLRKTDIDTQETLADEFSRLDMTEALSSHQYRDFFYPVVQMMVDLDKAFSRFDADIEAAIAAQVDDTAQKLKKGRSIFDSKPARIGFVVAAATTILGRVGMEQDDDPDATNAKLAGIQSSLKALIDKLNGYDSDELQTFLKLDVLSERLYGQKRSAVGRYERAFFDSAFKVLFEEDFEVPSMEPCWRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP021046	Phaeobacter gallaeciensis strain P129 plasmid pP129_f, complete sequence	14991-15022	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP010722	Phaeobacter piscinae strain P18 plasmid pP18_g, complete sequence	36627-36658	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP045379	Sulfitobacter sp. THAF37 plasmid pTHAF37_g, complete sequence	12204-12235	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP010775	Phaeobacter piscinae strain P13 plasmid pP13_h, complete sequence	36627-36658	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP018079	Sulfitobacter sp. AM1-D1 plasmid unnamed3, complete sequence	9663-9694	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP014799	Salipiger profundus strain JLT2016 plasmid pTPRO3, complete sequence	17245-17276	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NC_008388	Roseobacter denitrificans OCh 114 plasmid pTB3, complete sequence	392-423	0	1.0
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP004397	Celeribacter indicus strain P73 plasmid pP73D, complete sequence	19231-19262	1	0.969
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP043623	Rhodobacteraceae bacterium SH-1 plasmid p5, complete sequence	3685-3716	6	0.812
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP029988	Sphingomonas sp. FARSPH plasmid p03, complete sequence	46466-46497	7	0.781
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP029988	Sphingomonas sp. FARSPH plasmid p03, complete sequence	46408-46439	9	0.719
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP049035	Fluviibacterium aquatile strain SC52 plasmid pSC52_7, complete sequence	7146-7177	10	0.688
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP015096	Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence	29512-29543	10	0.688
NC_008388_1	1.1\|396\|32\|NC_008388\|PILER-CR	396-427	32	NZ_CP034817	Paracoccus sp. Arc7-R13 plasmid unnamed7, complete sequence	14353-14384	10	0.688

1. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP021046 (Phaeobacter gallaeciensis strain P129 plasmid pP129_f, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

2. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP010722 (Phaeobacter piscinae strain P18 plasmid pP18_g, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

3. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP045379 (Sulfitobacter sp. THAF37 plasmid pTHAF37_g, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

4. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP010775 (Phaeobacter piscinae strain P13 plasmid pP13_h, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

5. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP018079 (Sulfitobacter sp. AM1-D1 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

6. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP014799 (Salipiger profundus strain JLT2016 plasmid pTPRO3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

7. spacer 1.1|396|32|NC_008388|PILER-CR matches to NC_008388 (Roseobacter denitrificans OCh 114 plasmid pTB3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgcagt	Protospacer
********************************

8. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP004397 (Celeribacter indicus strain P73 plasmid pP73D, complete sequence) position: , mismatch: 1, identity: 0.969

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gagtcgacattcgtggttttagttaccgtagt	Protospacer
****************************.***

9. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP043623 (Rhodobacteraceae bacterium SH-1 plasmid p5, complete sequence) position: , mismatch: 6, identity: 0.812

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gcagcgacattcgtgtttttagttaccggtgt	Protospacer
* . *********** ************  **

10. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP029988 (Sphingomonas sp. FARSPH plasmid p03, complete sequence) position: , mismatch: 7, identity: 0.781

-gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
cgcgccgg-attcggggtttcagttaccgcagc	Protospacer
 * *.**. ***** *****.***********.

11. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP029988 (Sphingomonas sp. FARSPH plasmid p03, complete sequence) position: , mismatch: 9, identity: 0.719

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
gggcgaggattcggggtttcagttaccgcagc	Protospacer
*.*. .. ***** *****.***********.

12. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP049035 (Fluviibacterium aquatile strain SC52 plasmid pSC52_7, complete sequence) position: , mismatch: 10, identity: 0.688

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
tgcctgatattcgtggttttaggtaccgcctg	Protospacer
 . ..**.************** ******

13. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 10, identity: 0.688

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
ttacccacattcggggtttcagttaccgcccg	Protospacer
  ..* ******* *****.*********

14. spacer 1.1|396|32|NC_008388|PILER-CR matches to NZ_CP034817 (Paracoccus sp. Arc7-R13 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.688

gagtcgacattcgtggttttagttaccgcagt	CRISPR spacer
ttaccgatattcgtgtttttagttacctgcat	Protospacer
  ..***.******* ***********   .*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1076

Roseobacter_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143090282.1\|815_1076_+	hypothetical protein	A0A191VYF1	Roseobacter_phage	4.2e-09	51.6

DBSCAN-SWA_2

13950 : 15846

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011655478.1\|13950_15846_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.0e-19	29.3

DBSCAN-SWA_3

19552 : 22928

Enterobacteria_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011655482.1\|19552_20431_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.2e-93	58.2
WP_044033606.1\|20443_21289_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.8e-32	40.7
WP_011655484.1\|21285_22362_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-88	50.9
WP_044033622.1\|22358_22928_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.7e-35	42.9

DBSCAN-SWA_4

35182 : 36895

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011655495.1\|35182_36895_-	bifunctional sulfate adenylyltransferase/adenylylsulfate kinase	A0A2P1ELS9	Moumouvirus	4.3e-118	41.8

DBSCAN-SWA_5

42759 : 47722

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011655501.1\|42759_44181_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.8e-46	28.1
WP_011655502.1\|44426_46031_+	VPLPA-CTERM-specific exosortase XrtD	NA	NA	NA	NA
WP_171960023.1\|46741_47722_+	acyltransferase family protein	A0A142KBN9	Gordonia_phage	6.7e-07	25.8

DBSCAN-SWA_6

50937 : 57590

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044033615.1\|50937_51939_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L4U8	Tupanvirus	1.1e-20	26.3
WP_011655510.1\|52411_53578_+	hypothetical protein	NA	NA	NA	NA
WP_011655511.1\|53604_54585_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_011655512.1\|54711_56103_-	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	1.3e-08	26.8
WP_011655513.1\|56582_57590_+	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	5.0e-58	39.5

DBSCAN-SWA_7

65437 : 67375

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011655519.1\|65437_67375_+	acyltransferase	B5WZU0	Pseudomonas_phage	2.7e-100	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_008209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_008209_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008209_1

3108184-3108269

Orphan

Consensus_repeat	Method
TAAAGCGTCATGCGGAAAACCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008209_1

>merge|NC_008209|1|3108184-3108269|CRISPRCasFinder
TAAAGCGTCATGCGGAAAACCTGCGGCACCCGCCGCAACATGATGTCGTAGATTTCAAGGCACTAAAGCGTCATGCGAAAAACCTG

>NC_008209|1|1|3108184-3108269|CRISPRCasFinder
TAAAGCGTCATGCGGAAAACCTG	CGGCACCCGCCGCAACATGATGTCGTAGATTTCAAGGCAC
TAAAGCGTCATGCGAAAAACCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008209.1\|WP_011569347.1\|3094169_3095054_-\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153248
NC_008209.1\|WP_011569354.1\|3105674_3106352_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NC_008209.1\|WP_011569355.1\|3106587_3108081_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NC_008209.1\|WP_011569346.1\|3093335_3094145_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|223867
NC_008209.1\|WP_105880264.1\|3108404_3108932_+\|hypothetical-protein	unknown	unknown	unknown
NC_008209.1\|WP_011569349.1\|3098693_3099599_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_008209.1\|WP_011569366.1\|3117148_3117934_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|184405
NC_008209.1\|WP_011569361.1\|3111894_3112548_+\|VPLPA-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|132413
NC_008209.1\|WP_011569359.1\|3110197_3110971_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NC_008209.1\|WP_011569348.1\|3095126_3098525_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|236404
NC_008209.1\|WP_011569351.1\|3102126_3103392_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226082
NC_008209.1\|WP_011569360.1\|3110967_3111714_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_008209.1\|WP_011569364.1\|3114830_3116315_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236384
NC_008209.1\|WP_011569365.1\|3116424_3117060_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|365877
NC_008209.1\|WP_011569353.1\|3104587_3105622_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|235474
NC_008209.1\|WP_011569350.1\|3099883_3102043_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_008209.1\|WP_011569362.1\|3112700_3114062_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_008209.1\|WP_011569358.1\|3109166_3110201_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NC_008209.1\|WP_011569363.1\|3114089_3114644_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NC_008209.1\|WP_011569352.1\|3103440_3104349_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786

Protein	Function_ID	Function_description	E-value
NC_008209.1\|WP_011569347.1\|3094169_3095054_-\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	1.35531e-82
NC_008209.1\|WP_011569354.1\|3105674_3106352_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	5.92708e-77
NC_008209.1\|WP_011569355.1\|3106587_3108081_+\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NC_008209.1\|WP_011569346.1\|3093335_3094145_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|223867	COG0796, MurI, Glutamate racemase [Cell envelope biogenesis, outer membrane].	1.74869e-65
NC_008209.1\|WP_011569349.1\|3098693_3099599_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.717e-50
NC_008209.1\|WP_011569366.1\|3117148_3117934_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|184405	PRK13931, PRK13931, 5'/3'-nucleotidase SurE.	0
NC_008209.1\|WP_011569361.1\|3111894_3112548_+\|VPLPA-CTERM-sorting-domain-containing-protein	gnl\|CDD\|132413	TIGR03370, VPLPA-CTERM, VPLPA-CTERM protein sorting domain. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (). It is predicted to interact with a putative transpeptidase we designate exosortase. This model describes a variant with conserved motif VPLPA, rather than VPEP. It appears to be the recognition sequences for exosortase D (TIGR04152). This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.	0.000781791
NC_008209.1\|WP_011569359.1\|3110197_3110971_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	4.9654e-69
NC_008209.1\|WP_011569348.1\|3095126_3098525_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|236404	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated.	0
NC_008209.1\|WP_011569351.1\|3102126_3103392_-\|VWA-domain-containing-protein	gnl\|CDD\|226082	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only].	3.10322e-107
NC_008209.1\|WP_011569360.1\|3110967_3111714_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	4.89812e-112
NC_008209.1\|WP_011569364.1\|3114830_3116315_+\|amidophosphoribosyltransferase	gnl\|CDD\|236384	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.	0
NC_008209.1\|WP_011569365.1\|3116424_3117060_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|365877	pfam00106, adh_short, short chain dehydrogenase. This family contains a wide variety of dehydrogenases.	1.60892e-25
NC_008209.1\|WP_011569353.1\|3104587_3105622_+\|dihydroorotase	gnl\|CDD\|235474	PRK05451, PRK05451, dihydroorotase; Provisional.	0
NC_008209.1\|WP_011569350.1\|3099883_3102043_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_008209.1\|WP_011569362.1\|3112700_3114062_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_008209.1\|WP_011569358.1\|3109166_3110201_+\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	3.32481e-110
NC_008209.1\|WP_011569363.1\|3114089_3114644_+\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	2.44975e-20
NC_008209.1\|WP_011569352.1\|3103440_3104349_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.62978e-47

>NC_008209.1|WP_011569355.1|3106587_3108081_+|replicative-DNA-helicase
MNEISTFNPTGVDVQSPETMPHSIEAEQQLLGAILTNNDIYDRVASIIGPQHFYDPVHARIFEIAAARIAKNSLASPVTLKAFMEDDEGLKELGGPAYLARLAGAAISAFAVKDYAQMIYDLAVRRDLIQLGRTISDKAAHVDVASEPREQIVEAEQALYALAEQGQSESGFQSFLKAVTDAVNVANAAYQRDGGMSGVSTGLIDMDKKLGGLHRSDLLILAGRPSMGKTSLATNIAFNIAKAYKRGVLPDGSEGAVDGGVVGFYSLEMSAEQLAARILSEASEVPSEQIRRGDMTETEFRRFVDAAKSLEACPLYIDDTPALPIAQLAARARRLKRTHGLDVLMVDYLQLVRGTGKSENRVNEISEITMGLKAIAKELDIPVVALSQLSRQVESREDKRPQLSDLRESGSIEQDADVVMFVFREEYYKEREKPGDHDLEAMAKWQEEMDRLHGRAEVVIGKQRHGPIGTVELSFEGRFTRFGNLVQPWQQGSDREF
>NC_008209.1|WP_011569354.1|3105674_3106352_+|orotate-phosphoribosyltransferase
MIPSAYPDAKEMARLTARMLLEIHAVHFNAKDPFTLSSGLPSPTYIDCRKLISFPRIRATLMDFLTVTVMRDVGFEAFDNIAGGETAGIPFAALVAERMALPMTYVRKKPKGYGRNARIEGAMGEGERVLLVEDLTTDGGSKLSFVDAIRETGATCGHTAVIFYYDIFPETTKTLGDHGVALHSLCTWWDVLAEAKQQGVFDEATLSEVEKFLHNPRKWQEANKK
>NC_008209.1|WP_011569353.1|3104587_3105622_+|dihydroorotase
MTKTLTIRRPDDWHLHLRDGAMLRAVLPETTAHFARAIIMPNLVPPVVTFAQAQDYHARILAALPEGAEFTPLMTLYLTEDTDPDDVAAAHANGLVHAVKLYPAGATTNSASGVANFDNIRAVLERMAEIGLPLCVHGEVTDDDIDIFDREAVFIDRVLDPIRQATPGLRVVMEHITTRNAVDYATAQDDTLGATITTHHLVINRNHILAGGIKPHYYCLPVAKREEHRLALRAAATSGDARFFLGTDSAPHTDANKLLPCGCAGCFTATNTMSILAHVFEEEQALERLEGFASLHGPAFYRLPANEARLTLTKTPATFPSHIETEDGPVTVFDPGFVPNWTVV
>NC_008209.1|WP_011569352.1|3103440_3104349_-|MoxR-family-ATPase
MITPKTIDAVQEMLADQGYVCDRALGTVVFLALQLGRPLFLEGEAGVGKTEIAKALAAGLNRRLIRLQCYEGLDASSAVYEWNFPAQMVAIRTAEATGAASRGALQSELFSDDYLIERPLLQAMRPDENGAPVLLIDELDRTDEPFEAFLLEALSDFQVTIPELGTIKAPEPPIVILTSNRTREVHDALKRRCLYHWVDYPDFEREMDILTARAPDAAAALSREVVAFVQALRTEDLFKKPGVAETIDWAKCLLALDVINLSPDVIADTLGAILKYQDDIQKLHGSEAKRILDEVKATLEPV
>NC_008209.1|WP_011569351.1|3102126_3103392_-|VWA-domain-containing-protein
MPEYAPLELPEDPKLAGNITHFARALRRAGVPIGPGRVIDAIRAVEAAGFTEKRDFYWTLHACFVNRPEHRAVFAQIFRLYWRDPRYLEHMMSYMIPAVRGVQEERKARSAEKRAAEALLDGAEAPDLSQGEEGEETEIEIDASLTMSSEERLRTLDFEQMSVAEIAEAKRMIARLSLPVKPIKSRRAQASLRGQRVDAARTLRQSMRQGGDLHKIALKQPRPRWPNLVVLCDISGSMSQYSRMVLHFLHAVANEKGAGWAKVHAFTFGTRLTNITRHLRQRDVDAALAAAGAEAQDWEGGTRIGSCLETFNRDWSRRVMGQGAVVLVITDGLDRDSPDRLAKQMERLHLSSRRLIWLNPLLRWEGFAPKAQGIAAMLPHVDSFRAGHSIASLQDLAAAISRPDDMGEKDRLMRLIGVQGV
>NC_008209.1|WP_011569350.1|3099883_3102043_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MQEPAITPDLIASHGLSPDEYDRILNIVGRTPTFTELGIFSAMWNEHCSYKSSKKWLRTLPTTGPQVICGPGENAGVVDIGDGQAVVFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPIAAMNSLSFGEISHPKTRQLVNGVVAGVGGYGNCFGVPTVGGEVRFDPAYNGNCLVNAFAAGLADADKIFYSAASGVGMPVVYLGAKTGRDGVGGATMASAEFDDTIEEKRPTVQVGDPFTEKRLMEATLELMQTGAVISIQDMGAAGLTCSAVEMGDKGNLGVRLDLEKVPVREEAMTAYEMMLSESQERMLMVLRPELEQEAKAVFDKWDLDFAIVGETIAEDRFLIVHNGEVKADLPLKTLAGTAPEYDRPWVATPAADPLGDVPDVDPIDGLRALISSPNYASKDWVFTQYDTMVMADTVRIPGIGAGIVRVHGTDKALAFTSDVTPRYVQANPVEGGKQAVAEAYRNLSAVGATPLATTDNMNFGNPEKPEIMGQFVGAIKGISAAVAALDMPIVSGNVSLYNETDGTAILPTPTIGAVGLIAHLDDVIGCDVRDGHVALVLGETHGHLGQSAILSEVYNRAEGDAPPVDLDQEKAHGDFIRANRAYIKACTDLSDGGLALAAFEMAENAGVGVCLDASDTATLFGEDQGRYLIACNFDQAEALMIAASQAGLTLTSVGKFTGQAVRFGASSAPLAELSDVYRQSFGAALA
>NC_008209.1|WP_011569349.1|3098693_3099599_+|LysR-family-transcriptional-regulator
MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQGELLFDATAAMTRRLDTAFARIRDSEEEVFGELRVTTTTGFGTLWLSPRLPKLYERYPDLKVDLMLEERVLDLPMREADVAIRMKEPSQADLIRKKLMMVRMCLYATPDYLADHAAPRTLEEIKDHRLICQNTDSDQVGAGRSLVQHLMTQNIRSMLTVNNYYGVLQGVLQNLGIGVLPDYVTEDFPDLVQVLPDLTSADVPVFLAYPEELRQSQRVSAFKDFVQDEIISYRKRLRANSDS
>NC_008209.1|WP_011569348.1|3095126_3098525_-|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MSSEKISLNDRYDLEKSPILLNGTQALVRLMLMQSARDRAQGLNTAGLVTGYRGSPLGAVDMQMQRAAQALDAHNITFQPGLNEDLAATALWGSQQAELRGEGRYDGVFGLWYGKGPGVDRSGDVMRHANMAGTSKFGGVLMAMGDDHTGESSTVLHQSEMALVDAYMPIVSPAGVQEILDYGLYGFALSRFAGLWVGVKTMKDTVEVTSVVDAEMARYDFVTPAFEMPDGGLNIRLVDERIEQEARLIDYKRFAAEAFAHANKMDKRVWGKPGARIGFAAAGKNWLDLEHALSLLNIDAAEAERIGVTTYKVAQTWPLDIKGFEAWADGLDLIVVVEEKRKLIEVQIKEALFDDRAGRRVVGGTRDGAPFFSAKWALDPVEIALKLGGLLLDEGRNTDGIVAGLALLEDAQRADNAEDIAARLPYFCSGCPHNSSTKVPEGSRAYAGIGCHFMAQWMDRETLGFTHMGGEGANWIGEAPFSTRTHVFQNIGDGTYNHSGIQAIRAAVSAGTNITYKILYNDAVAMTGGQGNDGGLTASRIVQEVRAMGVEALAVVYDDKEDVDFKAFNGVELHERADLQTVQEKFAKISGVSVIVYIQTCAAEKRRRRKRGLFPDPDKRLFINTDVCEGCGDCGIQSNCVSIVPKETELGRKRAIDQSSCNKDFSCIKGFCPSFVTLEGARIRKEPTAQFELPDLPPPDLPQIENTWNIVITGVGGTGVVTIGAILAQAAFIDGKGAGVMEMAGLAQKGGAVHIHCRLARKPSDIKAIRVSTGEAHALIGGDLMVSAGAKTLGLTAAGKTGAVVNSHEIITGDFTRDTEFRLPSERLTLALEARLQSRLDLFDASELARVVLGDSIFSNMMLLGAAWQKGHVPLSAAALRQAIELNGAAVDKNLRAFDIGRWAVLHDAQARALTTSNVVTLPKTQAEKIAVRAAHLKAYQSGRLARRYQKLLDRIDDDKVKDATLRGYHKVLSYKDEYEVARLLISSREKAMAEFEGDFKLSFNLAPPMLSRNGPDGRPQKREFGPWLERPLRLLARLKFLRATPFDPFGYTAERRMERALIRQYEADMAEVLPLVTDATRDAVAALAELPTQIKGFGPVKAANEAKAAKRREELLSVIRAGGPVVANAAE
>NC_008209.1|WP_011569347.1|3094169_3095054_-|lysophospholipid-acyltransferase-family-protein
MGALGRNITRDISYAHSAETKSGRALIRLMENSTGRLGLIKRARGYESEVAAGKDFFGVMAARYGLTLDLSAGSLDDIPRDGPLVVIANHPYGILDGLMMGHILEQTRGDFRILANSLFRKAEDINRIVLPISFDDTKEARMLNIATRKQSLHYLSQGGAIGVFPGGTVSTAARPFSKPMDPGWRGFTARMIAKSGASVLPIYFDGHTSRLFQIASHMHVTLRMGLLINEFGKRVDTPVRMSIGKPIGPETLAPLAKDSKAMMDFLRKATYELSPDPAKSFDLGYEFEDRHRVG
>NC_008209.1|WP_011569346.1|3093335_3094145_-|aspartate/glutamate-racemase-family-protein
MSVGIFDSGLGGLTVLDAVQTRLPDMPFAYLADSAHAPYGVRTADDIYDLTCQSVARLFDAGCNLVILACNTASAAALRRMQESWVPEDKRVLGVFVPLIEAMTERQWGDNSPPREVGVKHVALFATPATVASRAFQRELAFRAIGVDVEAQACGGVVDAIEDGDMMLAEALVRSHVEALQRKMPTPDAAILGCTHYPLMQDIFQKALGENVRVFSQANLVADSLADYLERHPGMRGTGSPVFLTTGDPARVSDRATQFLRRRIEFSAA
>NC_008209.1|WP_105880264.1|3108404_3108932_+|hypothetical-protein
MKHLLFLLAPLAVTACVGLEIEPVSVDDGADVGGLTLGTNTFVGQVSGTCAADMGCRTRPSGRDEFKFDVADGTAITAIRVSAVGTGPQGFAMKAVIKDLRGATERAPFLTGVTFPPNGQTRDGLVGFLDAGTVGPVPALSDYIMEVGTSDKKVPEGTFDVTYRLELDVQFVAPE
>NC_008209.1|WP_011569358.1|3109166_3110201_+|alanine-racemase
MSTAVLTIDLSALAANWRSLNALSDVETAAVVKANAYGLGVGTAASALAEAGARHFFVAVAEEGVALRQALGAGPQISVFSGHMAGDTALIRDAGLTPMINSIDQMIRHVEALPEHDFGIQLDTGMNRLGMEDGEWRAVREVATQRPPSLVMSHLACADEPSHQMNRQQLDCFVEMTQDITAPRSLAATGGILMGPDYHFDLTRPGIGLYGGLPFVDALPVVQLDVPVIQVRDVHPGETVGYANTWTATAPARIATISAGYADGLIRAMGAKARLHAGDTALPVVGRVSMDLIGVDVTALGSDPDSLQLIGRHQSVDTVAGFADTIGYEILTSLGDRYKRVYTQ
>NC_008209.1|WP_011569359.1|3110197_3110971_+|ABC-transporter-permease
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLTAVFTGGALALQIYAGGSRFNAEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIATMKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVGDIIGIFGGFAVATGTLGFNAATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAAVLILAANFVLTGVFFTL
>NC_008209.1|WP_011569360.1|3110967_3111714_+|ATP-binding-cassette-domain-containing-protein
MIRMEGVHKSFGSNHVLRGIDLNIEKGSSMVIIGGSGTGKSIALKCILGLVTPDSGKILVDGKDATTGDRDAFLARFGMLFQGSALFDSLPVWQNVAFRLLRGSLKRPKDEARAIAIDKLRRVGLKPDVADRFPAELSGGMQKRVGLARAIAAEPEIIFFDEPTTGLDPIMSGVINDLIREIVVEMGATAMTITHDMTSVRAIADNIAMLHEGVIQWTGPVAQMDASGDPYLTQFINGSADGPIESVR
>NC_008209.1|WP_011569361.1|3111894_3112548_+|VPLPA-CTERM-sorting-domain-containing-protein
MKKLALAAALVLATAATSHAATIIDSATKGFYNAGIGSVLNSTSIAFPGVGDGDPTQSFGPGDAPDLSAAASALGDWLTTPATPGGTWSATEQAIPRNWKVNDETAVIYAFDGGANGIENLNLSIGVDNGIFVWLNGVFQGGAMAPGGARLGEFTLDLGTVQAGTNFLQLLREDHGGGTGYAIEVTGDEISAVPLPAGLPLLLAGLGIFGWMKRRAA
>NC_008209.1|WP_011569362.1|3112700_3114062_+|DNA-repair-protein-RadA
MVKSPSFSCSACGSVTTKWAGRCESCGEWNTISEDAGISKGPAKSLGGKRGASVKLTSLSTEEAPPPRTTCGIKELDRVLGGGLVAASAILVGGDPGIGKSTLLLQAAAQFARSGLKTIYVSGEEASAQVRMRAQRLGLTDAPVQLAAETNLRDILTTLEAEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTSFAKRKGISVILVGHVTKEGQIAGPRVVEHMVDTVLYFEGERGHQFRILRAVKNRFGPADEIGVFEMTGSGLDEVANPSALFLSERGTPSPGSVVFAGVEGTRPVLVEFQALVSPSPHAQARRTVVGWDGGRLAMILAVLEARCGIPFAGLDVYLNVAGGMKVSEPAADLAVAAALLSAREDAALPADTVVFGEISLSGALRPATQTENRLKEAQKLGFTSAIAAKGGKAVGVSGITLNTMPDLTGFVGEIFGAG
>NC_008209.1|WP_011569363.1|3114089_3114644_+|CvpA-family-protein
MENFTMIDGVVALVIVISALLAYSRGVVREIMAIVGWVAAAILGFMFAPQVEPLIREVPVVGEFLADSCELSIIGAFAAVFAVALIVVSLFTPLFSSVIQRSALSGVDQGLGFLFGVARGVLLVAVGFFVYNTVVTGESYTVVDNSRSAAVFSQLSDDIEGAEPEQALGWITGQYEALVSNCGQ
>NC_008209.1|WP_011569364.1|3114830_3116315_+|amidophosphoribosyltransferase
MPPAHPFDTSYLRDSNDDDKLKEECGIFGVIGVADASNFVALGLHALQHRGQEAGGIVSYDAVQGFQSARRFGYVRDNFTSKSVMETLPGPLAIGHVRYSTAGSKGQTAIRDVQPFFGEFAMGGAAIAHNGNITNANALRRELIERGSIFQSSSDSECIIHLMARSLQRNIPERMEDALRRVEGAFSVVAMTRTKLIGVRDPLGVRPLVLGRIGDGWALSSETCALDIIGAEFIREIEPGEMVVITEKGVDSQFPFRPQKPRFCIFEHVYFSRPDSILGGRSVYETREAIGRELAKENPVEADLVCPVPDSGTPAAIGYSLESGIPYAMGIIRNQYMGRTFIEPTEQIRNMGVRLKLNVNRALIQGKRVILVDDSVVRGTTSRKIKEMILDAGAKEVHFRIASPPTAWPCFYGVDTPQREKLLAATMSEEEMRAHLQVDSLKFISLDGLYRAVGEAKGRNPKQPQYCDACFSGEYPVVPSDQIEDGFEMKPAAE
>NC_008209.1|WP_011569365.1|3116424_3117060_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKTALITGASRGLGYALAEALAPTHHIIAVAKTTGALEELDDRIQSHGGTTTLAPMDITNTDAMATLCRGIFDRWGSLDLWLHAAIHAAPLTPTSHIDSKDLAKSIATNVTATATLITFVAPLLGTTGQAVFFDDARAGEKFFGSYGASKAAQVALARSWQAESATTGPRVDIVTPPPMPTATRGRFYPGENRDALTPTRDAAEAVLSQL
>NC_008209.1|WP_011569366.1|3117148_3117934_+|5'/3'-nucleotidase-SurE
MRILITNDDGINAPGLMVLHEIATRLAGQDGEVWTVAPAFEQSGVGHCISYTRPMMVAQMGPRRFAAEGSPADCVLAGLHDVMKDSPPDLVLSGVNRGNNSAENTLYSGTIGGAMEAALQGLPAIALSQYYGPRNNAIENPFEASAQHGVDVVQRILAHTPQETGGYRLFYNVNFPPVPGDEVLGIRLATQGFREGLGFSTEPHNAPSGRRFLWIKGGDQHRPTAPGSDAQLNLEGYISVTPMRADLTAHDMMAPLAGINT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2875540 : 2944772

Paracoccus_phage(17.65%)

portal,integrase,tRNA,capsid,transposase,protease,tail,head

attL 2943115:2943131|attR 2946756:2946772

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011569133.1\|2875540_2876596_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_044033475.1\|2876606_2879936_-	hypothetical protein	NA	NA	NA	NA
WP_011569135.1\|2880092_2880554_+	peroxiredoxin	NA	NA	NA	NA
WP_011569136.1\|2880550_2881360_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_011569137.1\|2881527_2882862_+	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	3.3e-17	42.9
WP_011569138.1\|2882851_2883346_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_044033150.1\|2883786_2884347_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.4e-38	54.6
WP_011569141.1\|2884339_2884846_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.5e-39	53.1
WP_011569142.1\|2884975_2886163_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_011569143.1\|2886390_2886690_+	septum formation initiator family protein	NA	NA	NA	NA
WP_011569144.1\|2886825_2887836_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_011569145.1\|2887839_2889219_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_011569146.1\|2889230_2890526_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_044033151.1\|2890660_2891473_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_011569148.1\|2891584_2895529_-\|tail	glycoside hydrolase/phage tail family protein	A0A0B5A7K5	Paracoccus_phage	1.0e-223	38.8
WP_011569149.1\|2895528_2895975_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	8.2e-29	48.2
WP_011569150.1\|2895971_2896859_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	4.7e-60	40.1
WP_011569151.1\|2896858_2897491_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.9e-56	50.5
WP_011569152.1\|2897508_2898171_-\|tail	phage tail tape measure protein	C0LP53	Escherichia_virus	6.5e-14	31.1
WP_074958634.1\|2898183_2898342_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_044033152.1\|2898365_2898683_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011569155.1\|2898684_2899098_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_011569156.1\|2899126_2899537_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011569157.1\|2899533_2899872_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011569158.1\|2899868_2900462_-	hypothetical protein	NA	NA	NA	NA
WP_011569159.1\|2900620_2901799_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	9.0e-67	37.9
WP_011569160.1\|2901866_2902424_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.6e-34	54.2
WP_044033153.1\|2902457_2902679_-	hypothetical protein	NA	NA	NA	NA
WP_011569162.1\|2902671_2903850_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.8e-60	36.4
WP_011569163.1\|2903998_2905369_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.5e-76	40.4
WP_011569164.1\|2905889_2907056_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011569165.1\|2907055_2908315_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_011569166.1\|2908405_2908939_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011569167.1\|2909111_2909345_-	acyl carrier protein	A0A2I7RIC8	Vibrio_phage	5.6e-05	40.3
WP_011569168.1\|2909594_2910332_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
WP_011569169.1\|2910346_2911279_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_011569170.1\|2911469_2912669_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_011569171.1\|2912728_2913307_-	YceI family protein	NA	NA	NA	NA
WP_011569172.1\|2913640_2913994_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_011569173.1\|2914020_2914248_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_011569174.1\|2914258_2914894_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_011569176.1\|2915227_2915869_+	alternative oxidase	NA	NA	NA	NA
WP_011569177.1\|2915923_2916613_-	aquaporin Z	NA	NA	NA	NA
WP_011569178.1\|2916748_2918080_-	trigger factor	NA	NA	NA	NA
WP_171959988.1\|2918315_2921315_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_011569180.1\|2921994_2922567_-	hypothetical protein	NA	NA	NA	NA
WP_011569181.1\|2922660_2923383_-	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_011569182.1\|2923382_2924498_-	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_011569183.1\|2924771_2925068_+	virulence factor	NA	NA	NA	NA
WP_044033157.1\|2925115_2926042_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_011569185.1\|2926060_2927143_+	methyltetrahydrofolate cobalamin methyltransferase	NA	NA	NA	NA
WP_044033158.1\|2927381_2927657_+	STAS domain-containing protein	NA	NA	NA	NA
WP_011569186.1\|2927653_2928019_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	9.1e-10	33.0
WP_050759091.1\|2928028_2930272_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_011569188.1\|2930268_2930727_+	chemotaxis protein CheW	A0A248SKJ8	Salicola_phage	7.7e-06	23.9
WP_011569189.1\|2930726_2931611_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_011569190.1\|2931601_2931988_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.5e-07	33.1
WP_143090245.1\|2931988_2932354_+	hypothetical protein	NA	NA	NA	NA
WP_044033160.1\|2932405_2932642_-\|transposase	transposase	NA	NA	NA	NA
WP_187148491.1\|2933464_2933920_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011569193.1\|2934018_2934192_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011569194.1\|2934306_2942307_-	calcium-binding protein	NA	NA	NA	NA
2943115:2943131	attL	NA	NA	NA	NA
WP_011569196.1\|2943197_2944772_+\|integrase	site-specific integrase	B8R670	Lactobacillus_phage	1.1e-06	25.5
WP_011569196.1\|2943197_2944772_+\|integrase	site-specific integrase	B8R670	Lactobacillus_phage	1.1e-06	25.5
2946756:2946772	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008388

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008387

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_008209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection