CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_008060	Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence	0 crisprs	cas3,DEDDh,csa3,Cas14u_CAS-V,RT	2
NC_008061	Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence	0 crisprs	RT,c2c9_V-U4,Cas14u_CAS-V,csa3,DinG,cas3	1
NC_008062	Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence	0 crisprs	cas14j,RT,DEDDh,DinG	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

292377 : 305476

Hokovirus(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006476838.1\|292377_294330_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.6e-148	49.8
WP_006476837.1\|294586_295723_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	5.0e-22	26.9
WP_011544642.1\|295727_297641_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	2.9e-54	36.7
WP_006476834.1\|297763_298579_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.7e-37	33.7
WP_011544643.1\|298622_299309_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	1.2e-07	29.5
WP_006476832.1\|299305_299848_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_011544644.1\|299883_301440_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	6.2e-23	32.7
WP_006476830.1\|301445_302123_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_011544645.1\|302134_302920_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_006476828.1\|303122_304178_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.2e-72	45.9
WP_011544646.1\|304276_305476_-	Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter	A0A2H4UVM2	Bodo_saltans_virus	3.4e-05	24.3

DBSCAN-SWA_2

2852939 : 2928290

Pseudomonas_phage(20.0%)

transposase,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011546547.1\|2852939_2854238_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_078041952.1\|2854336_2855431_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_006477064.1\|2855687_2856770_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_011546548.1\|2856777_2857620_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_006477066.1\|2857687_2857999_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_006477067.1\|2858022_2858619_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_011546549.1\|2858821_2859613_+	dioxygenase	NA	NA	NA	NA
WP_011546550.1\|2861088_2862687_-	APC family permease	NA	NA	NA	NA
WP_006477070.1\|2863106_2863310_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.4e-20	71.6
WP_011546551.1\|2863413_2864664_-	Hsp70 family protein	NA	NA	NA	NA
WP_011546552.1\|2864888_2865494_-	nitroreductase family protein	NA	NA	NA	NA
WP_011546553.1\|2865651_2866935_-	MFS transporter	NA	NA	NA	NA
WP_011546554.1\|2867154_2867775_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_006477075.1\|2867852_2868425_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_011546555.1\|2868464_2869355_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041489268.1\|2869444_2870578_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011546557.1\|2870713_2871046_-	YegP family protein	NA	NA	NA	NA
WP_011546558.1\|2871201_2871696_-	hypothetical protein	NA	NA	NA	NA
WP_154233672.1\|2872112_2872322_-	hypothetical protein	NA	NA	NA	NA
WP_011546560.1\|2872339_2874508_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	2.2e-50	26.7
WP_011546561.1\|2874629_2875550_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011694129.1\|2875713_2876691_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_011694128.1\|2876715_2876868_+	DUF1427 family protein	NA	NA	NA	NA
WP_011546564.1\|2876911_2877940_-	transporter	NA	NA	NA	NA
WP_011546565.1\|2878152_2879157_-	hypothetical protein	NA	NA	NA	NA
WP_011546566.1\|2879278_2880124_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_011546567.1\|2880425_2884370_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_006477085.1\|2884366_2885356_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_050768801.1\|2885364_2886309_+	OmpA family protein	NA	NA	NA	NA
WP_011546569.1\|2886576_2887197_-	hypothetical protein	NA	NA	NA	NA
WP_011546570.1\|2887229_2888099_-	hypothetical protein	NA	NA	NA	NA
WP_011546572.1\|2888615_2890877_-	hypothetical protein	NA	NA	NA	NA
WP_011546573.1\|2890863_2891799_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_041489595.1\|2891776_2891986_-	hypothetical protein	NA	NA	NA	NA
WP_079999346.1\|2892018_2892888_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011546575.1\|2892841_2893882_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_011546577.1\|2896513_2897635_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_011694123.1\|2900387_2901488_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_006477091.1\|2901451_2903287_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_006477092.1\|2903363_2903849_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_006477093.1\|2903911_2904415_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_006477094.1\|2904485_2905976_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006484395.1\|2905991_2906507_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011546581.1\|2906553_2907189_-	hypothetical protein	NA	NA	NA	NA
WP_006477097.1\|2907561_2908173_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_006477098.1\|2908275_2909622_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011546582.1\|2909618_2910401_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011546583.1\|2910487_2910805_-	hypothetical protein	NA	NA	NA	NA
WP_011546584.1\|2911340_2911916_-	hypothetical protein	NA	NA	NA	NA
WP_011546587.1\|2916635_2919827_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	7.9e-57	27.6
WP_011546588.1\|2920183_2920984_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011546589.1\|2921093_2921297_-	hypothetical protein	NA	NA	NA	NA
WP_011546591.1\|2923029_2923914_-	sce7726 family protein	NA	NA	NA	NA
WP_011546592.1\|2924027_2925644_-	hypothetical protein	A0A1S5SA14	Streptococcus_phage	2.6e-24	22.3
WP_011544710.1\|2927027_2928290_+\|transposase	IS110-like element ISBma3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_008061

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2123373 : 2149234

Escherichia_phage(28.57%)

integrase,transposase

attL 2145206:2145221|attR 2157294:2157309

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011548482.1\|2123373_2124390_+\|transposase	IS481-like element ISBcen24 family transposase	NA	NA	NA	NA
WP_011694465.1\|2124394_2124532_+\|transposase	transposase	A0A1B0Z042	Pseudomonas_phage	1.9e-08	78.4
WP_011548486.1\|2126454_2126724_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011548487.1\|2126720_2127209_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011548488.1\|2127290_2127518_+	DUF1016 family protein	NA	NA	NA	NA
WP_085962301.1\|2127783_2128883_-\|transposase	IS3-like element ISBcen23 family transposase	S5WIU1	Leptospira_phage	4.8e-38	37.9
WP_011546517.1\|2129184_2130690_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011546518.1\|2130682_2131480_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	9.8e-33	37.2
WP_011548491.1\|2131574_2132438_+	hypothetical protein	NA	NA	NA	NA
WP_089446904.1\|2132596_2132785_-	hypothetical protein	NA	NA	NA	NA
WP_011548492.1\|2132765_2133320_-	hypothetical protein	NA	NA	NA	NA
WP_011548493.1\|2133408_2134359_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_011548495.1\|2134996_2135641_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_011548496.1\|2135653_2135962_+	hypothetical protein	NA	NA	NA	NA
WP_011548497.1\|2136730_2137894_+	arabinogalactan endo-1,4-beta-galactosidase	NA	NA	NA	NA
WP_011548498.1\|2137937_2139233_-	MFS transporter	NA	NA	NA	NA
WP_011548499.1\|2139237_2141208_-	beta-galactosidase	NA	NA	NA	NA
WP_011548500.1\|2141244_2142096_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011548501.1\|2142107_2143025_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_011548502.1\|2143115_2144354_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011548503.1\|2144417_2145572_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	3.4e-26	35.9
2145206:2145221	attL	NA	NA	NA	NA
WP_011548504.1\|2145807_2146821_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.4e-13	27.7
WP_011548505.1\|2147161_2147383_-	hypothetical protein	NA	NA	NA	NA
WP_011694462.1\|2147379_2148168_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.4e-36	35.7
WP_011694461.1\|2148142_2149234_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2L1IVA1	Escherichia_phage	1.5e-12	32.7
2157294:2157309	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008061

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection