CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008228	Pseudoalteromonas atlantica T6c, complete genome	2 crisprs	DEDDh,cas3,RT,csa3,DinG,WYL,Cas9_archaeal	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008228_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008228_1

1078653-1078769

Orphan

Consensus_repeat	Method
ATGGGTGTCTATATAATTCGGTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_008228_1

>merge|NC_008228|1|1078653-1078769|CRISPRCasFinder
ATGGGTGTCTATATAATTCGGTGGCACGACTCTAAAGATGGGTGTCTATATAATTCCCCTTGAATTACCATGGGTGTCTATATAATTCGGTGCCATGCGAGTCTATATTATTGTTTC

>NC_008228|1|1|1078653-1078769|CRISPRCasFinder
ATGGGTGTCTATATAATTCGGTG	GCACGACTCTAAAG
ATGGGTGTCTATATAATTCCCCT	TGAATTACCATGGGTGTCTATATAATTCGGTGCC
ATGCGAGTCTATATTATTGTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008228.1\|WP_011573797.1\|1082682_1084677_+\|CRTAC1-family-protein	unknown	unknown	gnl\|CDD\|379232
NC_008228.1\|WP_157043392.1\|1080414_1082394_+\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|369609
NC_008228.1\|WP_011573785.1\|1071158_1071809_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NC_008228.1\|WP_011573799.1\|1086932_1087784_+\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_041713328.1\|1086465_1086696_-\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011573800.1\|1087831_1088350_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NC_008228.1\|WP_011573783.1\|1068861_1070025_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NC_008228.1\|WP_011573802.1\|1090176_1090674_+\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011573787.1\|1073654_1074395_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_008228.1\|WP_011573784.1\|1070030_1071092_+\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NC_008228.1\|WP_011573798.1\|1084923_1085823_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180413
NC_008228.1\|WP_011573801.1\|1088419_1089460_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_008228.1\|WP_157043440.1\|1067437_1068862_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143421
NC_008228.1\|WP_011573794.1\|1078806_1079130_-\|DUF2834-domain-containing-protein	unknown	unknown	gnl\|CDD\|371414
NC_008228.1\|WP_081429923.1\|1076056_1076413_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133398
NC_008228.1\|WP_011573793.1\|1077474_1078458_+\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011573788.1\|1074668_1075148_-\|DUF2846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378537
NC_008228.1\|WP_011573795.1\|1079278_1079692_-\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011573786.1\|1071939_1073496_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NC_008228.1\|WP_011573792.1\|1076473_1077295_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377

Protein	Function_ID	Function_description	E-value
NC_008228.1\|WP_011573797.1\|1082682_1084677_+\|CRTAC1-family-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	7.13507e-08
NC_008228.1\|WP_011573788.1\|1074668_1075148_-\|DUF2846-domain-containing-protein	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	4.82742e-05
NC_008228.1\|WP_011573785.1\|1071158_1071809_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	1.05486e-98
NC_008228.1\|WP_011573800.1\|1087831_1088350_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	6.46576e-30
NC_008228.1\|WP_011573783.1\|1068861_1070025_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	7.2719e-133
NC_008228.1\|WP_011573787.1\|1073654_1074395_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.88788e-56
NC_008228.1\|WP_011573784.1\|1070030_1071092_+\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	1.48696e-111
NC_008228.1\|WP_011573798.1\|1084923_1085823_-\|SDR-family-oxidoreductase	gnl\|CDD\|180413	PRK06128, PRK06128, SDR family oxidoreductase.	4.94182e-155
NC_008228.1\|WP_011573801.1\|1088419_1089460_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	8.58308e-34
NC_008228.1\|WP_157043440.1\|1067437_1068862_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NC_008228.1\|WP_011573794.1\|1078806_1079130_-\|DUF2834-domain-containing-protein	gnl\|CDD\|371414	pfam11196, DUF2834, Protein of unknown function (DUF2834). This is a bacterial family of uncharacterized proteins.	1.3582e-32
NC_008228.1\|WP_081429923.1\|1076056_1076413_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.34379e-25
NC_008228.1\|WP_157043392.1\|1080414_1082394_+\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|369609	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.	1.13443e-144
NC_008228.1\|WP_011573786.1\|1071939_1073496_+\|MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.13495e-95
NC_008228.1\|WP_011573792.1\|1076473_1077295_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.17945e-80

>NC_008228.1|WP_011573793.1|1077474_1078458_+|hypothetical-protein
MPQPRKSQISLIDTPYYHCVSRCVRQSFLCGVDTHSGQSYEHRRGWVEARLLFLSTVFAIDICAYAVMNNHTHVVLCVDKTMADNWDSHEVLRRYHKLHRGTLLTQKFMNGDALSQSELITFEETVETYRQRLYDISWFMRDLNEYIAREANKEDGCTGRFWEGRFKSQALLDESAVLACMAYVDLNPIRAKIAKTPETSRHTSIKKRIHAAKNQQSQQCILMPFVGNPREEMPQGIAYSLKDYCELVDTTGRFIRDDKAGHIDNIHSPILQRLGLDAAQWLTLTTEFEKHFCYAAGAEQMMNAFKRHTHHQRLRGMTKAKELLRRG
>NC_008228.1|WP_011573792.1|1076473_1077295_+|SDR-family-oxidoreductase
MKNLTFKNKTVLITGASSGIGKEFAHQLASQNANLIITARTNSVLVEVAKELQSKNSSIWVKTIDVDLSEPGGAQLLFSKIDDMDLPVNFLINNAGFGKFCEFSDETFSNYHKMMMLNMHALVELTHLFLPHMKKQNSGGIINVGSTGSFQPLPYQAVYGACKAFVLNFSEALSGELLDTNIRVMALCPGVTESNFMKRANADTSKMKFSSTGKVVNNALSAYGKNRVYVVSGCVNYLTSLVPRFVSRKTAVITVANMFKNSVLNNIAQRKNA
>NC_008228.1|WP_081429923.1|1076056_1076413_+|MerR-family-transcriptional-regulator
MLLIGKVAEITGATRKAIRYYESIELIPSPIRSGTYRTYSEHDVMVISMIRRAQFLGFSLNELKEIVSKKITEKKLPIPLVSAHIDGKVIELEKESEALQSKIRELKKFKIDLMTKFS
>NC_008228.1|WP_011573788.1|1074668_1075148_-|DUF2846-domain-containing-protein
MNSVLVIVLSLILAACAGPIAKGSKFIKHTYIANNASLVYLYKPYSNDGVTVCLKVLLNDIERGCLSGKGFIRLNLEPGNYKVVLKPDAFLTHNLMEFDVSLQPNQVSYFEYTTTSDTPPKDAVAKRFYSFAGISGHNLIVEREENDALKTLSRLFESN
>NC_008228.1|WP_011573787.1|1073654_1074395_+|FadR-family-transcriptional-regulator
MSELVYYDLKRTATMTPSMPVQVARELGRRIVAGTYEPGTLIDEENTLANRYQVSRVVIRDAVKILVGKGLLDVRRGIGTRVRARDQWSMLDDDVLAWHLSAPPNPSFLKQLMEIRLAFEPKASRWAAERATDEDIAEIEAACVAMEQEEGTVENFIIADAEFHRAVLRAAHNEFLKAMEGVIYSALLVSIRLTNKDPRANKTSVPFHREVCNAIASRNANLAEELTANLLKDADHRLLDKVAKYK
>NC_008228.1|WP_011573786.1|1071939_1073496_+|MFS-transporter
MRNSEVDRNVTKFAIIAAFGGFVFGLDAANISGALRFVNSQFELSSMQTGTVVGVAILGVILALLFTGSFCDKFGRRKVLLAIALTYSLSTLLSAFATSYTMLVVGRFIGGVAFASITVSAMYIGEIAPADKRGKFVSINQLLITLGSLMAFLANYCLVLSMDSIAWIDNENVWRLMLGFELVPNIIWFLLLLTVPRSPRWLVAKGHLEEAREAFAKIAPKEQIESLIVAVQDSLNKESKNTPITQLKTLFSKRFTLVLCVAFGYAIVQGASGMNAVLFYAPTVFEQIGMSVEDTFMQTVILGLVAVIFTLVAIRFVEKWGRRNLTLIGLLFISIAHTSIWYGFKSAHYELSQEAIVKIQQSDIDVTLLQPLVGKTYATDVDLKRELTGIYSKKDLPLVSGAIINSTISINAFFVLFGLFAFLAAFNMSIGPVMWVIFSEIFPNNVRSVALPVAAFVQSISSYVIQQFFPWQLENLGAANTFLNYGIIAFIGMLVMAKILPETKGKSIEDIERDLVKV
>NC_008228.1|WP_011573785.1|1071158_1071809_+|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MSSMTLQAAMNALPLVAILRGITPDEVIPVARALKAEGFNIIEVPLNSPQPLESIKRLVEVFGDELIIGAGTVLSCAQVDQVQAVGGRIIISPNVNADVIRHAKAKGLYSVPGFYTVSEAFSAIEAGADGIKLFPADTLGAAGLKGMMAVLPKDVPVLPVGGVSNETMSGFVDVGAGGFGLGSGLYKAGMTVEQVTENAQGYVRACRAAQAKTKGN
>NC_008228.1|WP_011573784.1|1070030_1071092_+|2-dehydro-3-deoxygalactonokinase
MIDFNRAVLICVDWGSSNLRAYLIDGMGEVLARLQSDKGVLNFSAGQYGPELSGLLQPWLREKAVPVMLAGMVGSAQGWQDAGYVACPATLADLAKNLCSVANSVAHDRQRQPYIVPGVKGLSNFGQVDVMRGEEVQIFGALCATYPNAVQATPLVCLPGTHSKWAQVTMAPIEASGLSSNSIALSHITQFSTYMTGELFALLNTHSILGKMCQHVANPENTNSGEMFDGEAFDEGVKTARAPGSLLHKLFSARSKVLNNDLLASGVHSYLSGMLIGTEVFDMLSVYQPNDINTAENTNSGGPHTQIILVGAPALSKLYKRVIASTSLNVRCVDAETASCLGMLNIAKVAGKL
>NC_008228.1|WP_011573783.1|1068861_1070025_+|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MKITQVISHVLQYDLDEELGYSQQYYFKRTTHLVEIRTDIGVTGWGECFGGGNIALANKTIVEKVIQPMILGMNPLDREVIWHKAYNLMRDHGQKGMPIQSLSGIDIALWDIAGKIHNVPVYQLLGGAFREKIGVYGYGMMLQRVPDLEHRFELESAAILDKGFKAMKMKIGLGVEKDVRLVEAVRKSIGPDVPLMVDANHAYTTREAIPLGRELERLGVAWFEEPVAPEDLQGYRDLCEALDVNIAGGEGEFTVWGFRDLIKNRCVDILQPEVCGLGGITHYQKVLAMAQAHFVPVVNHVWGSAVAVATNMHLLAALPDFPGAAHPVQPMLEYDTTPNRFREELLVDSLEINEQVKRNDGFVALPKGPGLGIEPNLDFIKKYSVGY
>NC_008228.1|WP_157043440.1|1067437_1068862_+|aldehyde-dehydrogenase-family-protein
MYINGTLHSGHASVSIINPANDKVVAEVSVADGALALKALEAADAAYDSWSSTSISERVEWMMKLKTALKENETHLRECIHLEMGKSWASTQGDFEMLLDSLDFFASDIQKQAAETLEDKEGTHSHVLVRESVGVVAAFLAWNFPLLNLAYKLGPALASGCPIVVKPSLKTPLSALAVGEICQQIGLPAGVVNIVCGPDQEIGDAISSSPIPALLTLIGSTETGKHVMQQGATSIKRYSMELGGNAPVLIFDDADVDLAADIVCGLKFENAGQICVAPNRVFVHRDVAEIFYQKVLARTQAVKVGFDRNDAIDMGPVIDQQAWQRIDALVNDAVAKGAEVLIGSGRPAHLPKGAFYAPTVLKGVTRDANIYREEVFGPVISILTFDEEAQVVKDANDTDAGLSSFIFTANEERAQRIAKRLRFGEVHVNGVKYAIHLPHCGVKQSGVGVDCSHLSLEEYFTVKRISTALGKGQA
>NC_008228.1|WP_011573794.1|1078806_1079130_-|DUF2834-domain-containing-protein
MTKLYLLLTVLGIAIPFGAFIPWVVTNGLDFIALFNAAIANPISIFAWLDVLVSALVLLTFIVVDGKRNKVKYHWLAVLGTLCVGVSFGFPLYLYLKEKQHLNSIVP
>NC_008228.1|WP_011573795.1|1079278_1079692_-|hypothetical-protein
MIRFNLYFKAVDAEFTLKQKTGSCKPAFFASILFIFFELILSFFSDGPDYDIEKILYQALALGVEEELMFRGLLLYTFSFAIISTRFDMLGAQINVAGLLLFLLFGLVHGIMYNGGEWCFSLIIVLLTGCYSFIYCG
>NC_008228.1|WP_157043392.1|1080414_1082394_+|glycoside-hydrolase-family-127-protein
MNTKYAHNKAINANSKSPFVKFRSINIGDCQWTEGFWADKFKQAETIMVPHMGELLKGDVGHAYNNFKIAAKMQDGEAKGMLWHDGDFYKWMEACIYVYGINKDTALLTELDEIISVLASAMCSDGYLHTHNQILGKPRWKAVCDHELYNSGHLILGGVIHHRVTGQTNWLDLSIKHADYLYGVFTSKDEELARFGFNPSQIMALVELYRETGVNKYLELADIFVTMRGSVPMELHDSVPYWFTGDQCQMKTPLREETEAVGHAVTGMYLYSGAADVYAETGETALIDSLQSIWSSANERKMYVTGALGQCHHGAYDDQNMIHEGFIDDYLMPNSTAYNETCANISNAMFNWRMLGITGDAKHADNVELVLHNSAMVGISADGEKYFYANPLRMNFGQRDYSDHCDCTESPDREAYIECFCCPPNLVRTIAQVSAWAYSLTDNGVAVNLFGSNNLNTKLLDGSDLSLSQVTNFPWDGAICIDVKACKTESFDIAVRIPGWAKDATVTVNGETINGVKNGEYLTLSRQWREGDKIAIDLPMNTTFVEGHPRIEEIRNQVAVKRGPLVYCIETPDLPENTGILDAYIASDAQFDAQFDQSFLGGMTTIKTQLLVRQDNTQNMYDEVQKPTWGSHQAQFIPYYAWSNRGTAEMTVFVPVVWK
>NC_008228.1|WP_011573797.1|1082682_1084677_+|CRTAC1-family-protein
MMTFKISAQAFLLLGSSLIVMGCELPSRSSTNEAASQLLAQQSNQAQTLFSENQDALPSPKRASRKWDGPIVGDLDGDGWQDLLLTEHADKILIFWNEKGKFSQPDTLQTGDMHGTGIADFDNDGLLEVIIAQGGGNGSNPRKPKHIEITKARQLTENRVLNHFEKGRGRAVKTLDANQDGSVDLFLTGFATPEQAKAGANHLYSNDGTGAFTFEGNLPYSQRLSYKTIVTNINDDDDPDVIIFGGGKMVAALGGPDFEFIDATKAVLGDAYKTTEVSAIAQLDYDNDGDLDLAISRAKHQFSHQLFYDKAQQRYAFFSRFQPLYIEELSINGNFHLVNLQMAYPDFDIYLGQNKSKLNIAGRKDIKSYESDLSGSRALNIEPQQALGWPSDICPEGVKMKYLSPESKPGLYIGYLGDDKWRICSQTRSPTAGVVLNVTDGPTPTTIERLPVKLLENQNGHYVEVTAVKGIDIQQPTASVVAADFDNDGWTDLLFMRYGNMAKPHKPIMYLNDKGNGFVEHKDHGIVINDLGATGAGADVIDFDKDGDLDLVTANERGTWRLFENHTSGQSSHHFLGVMVGGSPSGKATQLAAKATLQACGRQWQQQVGASSSAYADSYNNQLLFGLGNCTHVESVKVQWSDGETKVYIPNMIDGYFDTTAARR
>NC_008228.1|WP_011573798.1|1084923_1085823_-|SDR-family-oxidoreductase
MKKNQFTMQDPRSQYHMSDTEKDSEQPDPGLDEILKPKADHGEDTYLGSNRLKGRKALITGGDSGIGRAVAIAFAREGADVVINYLPSEEEDAKDTLQVLKASGINAFGIPGDISDEEFCKSLVTQSAECLGSIDILVNNAGKQQFVADLEDLTTEQFCQTYATNVFGMFWITKAAVKHMPPGASIINSTSIQSYQPSAGLLDYASTKGAITSFTKGVAKMLIDKGIRVNGVAPGPIWTPLQQSGGQPAKKLPTFGENVPIGRPGQPAELAPVYVYLASQESSYVTAEIMGVTGGQHLP
>NC_008228.1|WP_041713328.1|1086465_1086696_-|hypothetical-protein
MSNQYDKNSISETFADAISEEEKRKLYKAVSNQRHKAMSTLTGVKTFVKANPIKATGLAVLGGLLITSIFKGKSHH
>NC_008228.1|WP_011573799.1|1086932_1087784_+|hypothetical-protein
MAIIVEDSIQEPKGNPLGEINAQFHRLYQVEKAKAVASINDGEVMLICRIDSRLIVKAGSKVKEYVINDERYQSLKAMSHGTLAVYYQLCHSVDEATLCQVNRWVSQIRQQAPLSLGKEVADVTMKLLERIEHSNVLPHSAMSLYQQELESIYAKLMTEAVNDEIDNLVSNLERVCSEDDYPSSNIFMIVFGGHQPRYKALALQVFKKWFAGNQRHISNCEHHVRYCEAGESLDDAVDLVATAIVDRELARSTMGYSEALNRDVLSAVAEKAIEEYWLNNSLR
>NC_008228.1|WP_011573800.1|1087831_1088350_-|DUF421-domain-containing-protein
MLVNDPLADLFLRAIVLTGIAMFWVVLLVRVNGLRSFSKMTNFDFVMTVAIGSLLAGASQSTDWTSFVQTILSMAMLFIVQFTTATIRKKSSTFESVMQNQPALLMKDGVILHAALKATRVAENDLIAKLREANVLHLSQVRAVVLETTGDISVIHGDSCSDAILQGVRTVK
>NC_008228.1|WP_011573801.1|1088419_1089460_-|AI-2E-family-transporter
MNVKLVAKRALVQAVTTVAVLLFTWLIIGNSKIFLVAFGGILIAVMFSGSARWLAKKTNITAKVWLPISMLAPVLLLGLLMTYAAPKISTQANELVDRMPEALEFVRGQFTEFSSIGKFNDNLDKITNYDPKMSTVMNAVSSLLSSTINGFGNFIFAIILAIFLSINPKWYVNGGLSLVPLQHKNKAQDLLKRCETALAGWLLAKLASMVMVGLFTTVGLWALGIDLALILGIIAALLSFIPNLGPLLAFIPAGLVSILTGIDTLLYVSILYVGVQTVESYVLTPILQAEIASLPPALVLLVQVLLASMVGMAGVLLAAPLTVLLIVITNQLYVKRLQGYKEQDSS
>NC_008228.1|WP_011573802.1|1090176_1090674_+|hypothetical-protein
MSDIITGLFKNPAEASAAITMLEHKGFSDANISLVANDSITKDSFALTDHSKLPEGVAIGASSGGVLAAIVGGLAAVGVVATGGVGVLASGPLVAALAAGGAGAAAGGIIGGAIGLAIPEHEVKFYEDAIEEGSVLVGVHYDNSDQKDVIKETFKHFDDVKVASA

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Crispr_ID: NC_008228_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008228_2

4135891-4136019

Orphan

Consensus_repeat	Method
GCTTAATTATGGCCTTCGGCCACACAGCACAGCTTCGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008228_2

>merge|NC_008228|2|4135891-4136019|CRISPRCasFinder
GCTTAATTATGGCCTTCGGCCACACAGCACAGCTTCGCTGCGTTACGCACTGCGTGTGCCAAGCAATCGCGTTGCTCACTATGCGCTTTGCTTATTTATGGCCTTCGGCCACACAGCACAGCTTCGCTG

>NC_008228|2|2|4135891-4136019|CRISPRCasFinder
GCTTAATTATGGCCTTCGGCCACACAGCACAGCTTCGCTG	CGTTACGCACTGCGTGTGCCAAGCAATCGCGTTGCTCACTATGCGCTTT
GCTTATTTATGGCCTTCGGCCACACAGCACAGCTTCGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008228.1\|WP_011576180.1\|4138628_4139237_+\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011576171.1\|4120932_4121865_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|238882
NC_008228.1\|WP_011576186.1\|4147127_4148921_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NC_008228.1\|WP_011576178.1\|4132143_4135842_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NC_008228.1\|WP_011576174.1\|4125487_4126507_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|367273
NC_008228.1\|WP_157043422.1\|4136203_4136422_+\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011576173.1\|4124601_4125276_-\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_157043423.1\|4142275_4143853_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379050
NC_008228.1\|WP_011576185.1\|4145800_4147093_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340886
NC_008228.1\|WP_041714574.1\|4130779_4132144_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NC_008228.1\|WP_011576176.1\|4127661_4130193_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_008228.1\|WP_011576183.1\|4143956_4144598_-\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011576170.1\|4118990_4120673_+\|phosphoethanolamine--lipid-A-transferase	unknown	unknown	gnl\|CDD\|183224
NC_008228.1\|WP_011576172.1\|4122051_4124106_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NC_008228.1\|WP_157043467.1\|4148998_4150165_-\|nucleoside-phosphatase	unknown	unknown	gnl\|CDD\|334404
NC_008228.1\|WP_011576181.1\|4140710_4140992_-\|hypothetical-protein	unknown	unknown	unknown
NC_008228.1\|WP_011576179.1\|4137366_4137651_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NC_008228.1\|WP_011576175.1\|4126662_4127505_+\|DUF2797-domain-containing-protein	unknown	unknown	gnl\|CDD\|378524
NC_008228.1\|WP_011576169.1\|4117045_4118794_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NC_008228.1\|WP_011575376.1\|4141104_4142313_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573

Protein	Function_ID	Function_description	E-value
NC_008228.1\|WP_011576171.1\|4120932_4121865_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|238882	cd01846, fatty_acyltransferase_like, Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.	2.05522e-72
NC_008228.1\|WP_011576186.1\|4147127_4148921_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.9851e-76
NC_008228.1\|WP_011576178.1\|4132143_4135842_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NC_008228.1\|WP_011576179.1\|4137366_4137651_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	1.64046e-14
NC_008228.1\|WP_011576169.1\|4117045_4118794_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NC_008228.1\|WP_011576174.1\|4125487_4126507_-\|phosphotransferase	gnl\|CDD\|367273	pfam02958, EcKinase, Ecdysteroid kinase. This family includes ecdysteroid 22-kinase, an enzyme responsible for the phosphorylation of ecdysteroids (insect growth and moulting hormones) at C-22, to form physiologically inactive ecdysteroid 22-phosphates.	3.49819e-05
NC_008228.1\|WP_157043423.1\|4142275_4143853_-\|AAA-family-ATPase	gnl\|CDD\|379050	pfam13175, AAA_15, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.15887e-08
NC_008228.1\|WP_011576185.1\|4145800_4147093_+\|MFS-transporter	gnl\|CDD\|340886	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters. The protein spinster family includes Drosophila protein spinster, its vertebrate homologs, and similar proteins. Humans contain three homologs called protein spinster homologs 1 (SPNS1), 2 (SPNS2), and 3 (SPNS3). Protein spinster and its homologs may be sphingolipid transporters that play central roles in endosomes and/or lysosomes storage. SPNS2 is also called sphingosine 1-phosphate (S1P) transporter and is required for migration of myocardial precursors. S1P is a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. The spinster-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.99254e-100
NC_008228.1\|WP_041714574.1\|4130779_4132144_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NC_008228.1\|WP_011576176.1\|4127661_4130193_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.009e-63
NC_008228.1\|WP_011576172.1\|4122051_4124106_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	5.86572e-112
NC_008228.1\|WP_157043467.1\|4148998_4150165_-\|nucleoside-phosphatase	gnl\|CDD\|334404	pfam01150, GDA1_CD39, GDA1/CD39 (nucleoside phosphatase) family.	1.58038e-14
NC_008228.1\|WP_011576175.1\|4126662_4127505_+\|DUF2797-domain-containing-protein	gnl\|CDD\|378524	pfam10977, DUF2797, Protein of unknown function (DUF2797). This family of proteins has no known function.	7.11951e-129
NC_008228.1\|WP_011576170.1\|4118990_4120673_+\|phosphoethanolamine--lipid-A-transferase	gnl\|CDD\|183224	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional.	5.88183e-134
NC_008228.1\|WP_011575376.1\|4141104_4142313_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	9.8835e-06

>NC_008228.1|WP_011576178.1|4132143_4135842_+|AAA-family-ATPase
MKILSLQFSNLNSLKGQWKIDFRQAPFADNGVFAITGPTGAGKTTLLDAICLALYHETPRLGALSANNNEIMTRGTAECSAEVEFEVKGMAYRAFWSMRRSHGKPDGKLQAAVVELGDVASEKVLASQIKKKSELIEQITGLDFGRFTKSMMLSQGEFAAFLNADEKQRAELLEELTGTEIYGLISERVHQHYSQAKQQLAELEAQAKGVQLLSEDQKQALMDEQQDLQGQQKERQIHISAKQEHVNWWQQLDSAQSAQQQATLQLTQAQHEKEQQKEALQRLANSHPSEALRAPFELLTDAQAQCINDEKALGQSQQQLQTSDASLAQSKTVSVAVSNEFQAIKATYHAQETLLNEEVIPLDNEIRQHQDQLTQTNAQHAQLSTKHAQLVQDVENTQTGINSQQQSLKQANDYLTARPSDEALKQYLGQWQLQAQQIKKEQTSYQQLAEKCKQEQRQLHLAQQDAQLNQQQHEKINQQTRELENEFQQQTERLSKLEEHGAIDPQERQLSTLQSLTPSLLALKNTQQQWQQQTQELTEKQTQLADNLAQQKNLSNEREVIKRQYLAKSQQVKLLSQLISQEEQLIHFRAALKDEHPCPLCGAKEHPLTSEMAVDIPDTVTQKQQQESELAQLEEQGKEIRAKLDAFLRGETELRQRIDWLSTQQAQLSQTWPEMCQALSPLSDQQTNLQLTIDNADSLIAIENQFNQQIQQLQKQIEKLKTQARTLLVSKEKWQHSQSQSQSASSALLLAQQSAKNLENSAQNLSNDIQQAGETLTSLSQSLLTHIQQHGYTPPEADNLLQWLTSKEQDAKQWEHHDNQRNEATVQIDKLTSAQQHQLSLSGDTKSQLTAIEQQRQTLRAQLESLSTKRFSLFADKSVKTERETLSETLRTLEARHEHAQQQMRQKEQEHNTHLANVQNAQTQLQQNQTRLKTRQNEWQTKLLASPFADQQAFEAALLDEATRATLQTLKQTLDDNLAKYQALLEQANTQVKTLLAHNNATQWQLQTRDAVIEALNALTEEQHKGNKREGEISQALNFDKQRSSEQQSLFSQIELQRNEFEHIHYLHSLIGSQKGDKFRTFAQGLTLDNLMYLANKQLERLHGRYLLKRKADASLALSVIDTWQGDIQRDTKTLSGGESFLVSLALALALSELVSHKTSIDSLFLDEGFGTLDSETLDIALDALDNLHASGKMIGVISHVEAMKERIVAQLAVTKKSGLGVSELDQRYAVR
>NC_008228.1|WP_041714574.1|4130779_4132144_+|exonuclease-subunit-SbcD
MKILHTSDWHLGQNFFTKSRKDEHQAFLNWLLNVLQVQKINAVIVAGDIFDTGTPPSYARQMYNQFVVELSKLSCTLVVLGGNHDSVSTLNESKQLLACLHTHVIANTMDNVEQQVIELTDATGRVGAILCAIPFIRPRDVLQSRAGETSEDKKLALSDAIKAHYASIFQLAVERRNQLADNGNGNAAQGIRNVSSTSVHIPIIATGHLTALGVSQSESVREIYIGTLDGFAADGFPPADYIALGHIHRPQMVAKSEHIRYSGSPIPLSFDELKSQKQVVIVAFDQQGQRSIAPLDIPMFQPMAMLKGDLESIKTQLTAFPLLTEKTSTEATRTEDDGQANNLSKPQVLTSVKPTWLCIHVDVQDYLSDLQQSIQTLTEGRNVEVLQLRRTRTKASQGLNQVNNETLAELTPFDVFEKRLALEHFEGEQDQTRLTKIRHTFSEIVEEVRHQEAK
>NC_008228.1|WP_011576176.1|4127661_4130193_-|TonB-dependent-receptor
MKKTHTFKAKDQWLKVALMMSASSAILSGANAYAQEQATEAADDLETISVIGSRRLGRTVEDSPVPIDIIGADSLSTTGQTETNMILGNLLPSFNFPQPSLTDGTDHVRPAQLRGLAPDHTLVLVNGKRRHSNALLNLNGSTGRGSSAVDLNAIPANAIERIEVLRDGAAAQYGSDAIAGVINIVLKSASSGGSASVTYGANVTTMDGVPDLKDVGIDDNGELAFTEGGDRELTDGQTATMRANMGFALGDDGFFNLSAEFRDRSASNRSDYDQRENYSRLEDGSLDPRELTWDRYNHNFGNGDVEDMAVFYNAGFELNENAEIYSFGSYSTREGEGGGFYRRAQDSRNIEAIYPDGFLPIITSDINDYSFATGVKGFMSDWNYDLSAVYGEDEFEFGVKNSLNTSLGPTSQTVFDAGTLIYDQLTINLDLSREIDVSGLASGVNVAVGAEYRREGYEIEAGEEASYVQGTFGGSAGSQVFPGFTPESAGDNSRHNVSLYVDLEAYITDNWNVTVAARYEDYSDFGSTVNGKFATRYTLTEEIALRASVSTGFRAPSLQQQYFTSIATVFVDGEPTETGTFAPNSDVAKALGSPGLDAEEAVNYGAGITWSPDSNFSVSVDYYNIKIDDRIVLSNNLSGEGIETLLAGTGANRARFFLNAIDSETSGVDVVASYNTDIQNWGDVAFNAGFNYNKNEVTDIIDPPAVLAGAGVDQGNLFSDVELRRFEVGSPKTKLNLSAVWTMDEWHATLRTTRYGETQEPSSDPATNEVLPEKWVTDLDVGYDVTDNLTLTLGANNLFDVYPDTTRELVEDVGTFSRLFPYSGFSPFGFSGRFVYGKVSVTF
>NC_008228.1|WP_011576175.1|4126662_4127505_+|DUF2797-domain-containing-protein
MTIYQGNIRKMRVSTDAEHLAQYQLPIGEQLIDMNPLIGKALNVSFDNQINCVHCQAKTKKSFNQGYCYRCLTKLAQCDTCIIKPELCHYDAGTCREPSWGEANCLSDHYVYLANTGTIKVGITRHVSDAVSSRWLDQGATQAMAIMRVQNRLTSGLVETAMKEFIADKTNWRTMLKSQPDTADLQQLKEDLITEIEDQLDEITEEYGFQAIDILDLPAVDIHYPVDQYPEKVKSINLDKELSFSGVLQGIKGQYWMLDGDRVINMRKYSGYHLSIETPE
>NC_008228.1|WP_011576174.1|4125487_4126507_-|phosphotransferase
MQTQLLTRLREYFDDPKLEKRELLQNLWSEYGEIARYDSPKLGKSVIVKHVAPPSKVHHPRGWHSEVGHQRKVRSYQVEAEFYQFFAGRCDETCYVPQFIGLIKSTNHPETQTLIMEDLKSSGFDLVYARATETQIKTVLSWLAHFHERFINIDTSTLWPVGCYWYLATRQAEFGVMPQGELKYNAQRIDEALNNARFQTLLHGDAKLANFCFSASETVAAVDFQYVGRGIGIKDVMYFLGSCLTDTVLFEKHDSYIDYYFAQFRAAILSSDTQGVQKRWVEELEQEWRGLIPLVWADFHRFLLGWSPEHVKINEFMQGQTAKALNRVREQPRYSAILA
>NC_008228.1|WP_011576173.1|4124601_4125276_-|hypothetical-protein
MSHSLLVSNIRRALKLNFIPAMCLQLIALGIGLSFFYWPASEPVFNFFADLKSHYGVVYAVMSTAVFGGLLPFMYLSLSGQIHFKPVRQLAFYCLLWAFMGWLVDAFYGLQITLFGNGTDAVTLIQKIAFDQFVFSALFTCPLLTLCYQFKDAHFNVRRTMQLLDKRLLLLYLPTTIVTNWLVWIPSVLLIYLMPPALQLPLFNLVLCFFVLVLAILNSEPTTT
>NC_008228.1|WP_011576172.1|4122051_4124106_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MIVHQEAIKDAVYQLFDEVDALSVQGYDEERNVIYWNLGSELLYGFSEEEALGKKLEDLIFPDFMREPVIAAHTDWINKGIKIPAEELTLRHKNGGDVNVFSSHVLFTNEHNKHEMYCIDIDLADVRQAQAQAKFKDNMLEAVFEATPDLFFLMEEDGTIIDSHGGDDKYLGASPSECVGRTITDLFPRKVARKYTLFNKRVIEQEGISTFEYELTLPDGIRYFEARLSHVKAYNQIVVIVRDITEQHKAAQTIRHHAYYDSLTLLPNRFLSLDRLSQMLKEAQRNEEKAALLFLDLDDFKKVNDSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDNDAKEVAENLLRVFRDPFLIDGKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSGRNTYSFFTKEMNAIMLRRFEIEGQLNQALQRKEFEVFYQPKFSVQNRNVIGAEALIRWRNPILGNVPPDEFIPIAEHTGLIVPIGKYVIEQALEFLREWASIHNKNYTIAVNLSPRQFRDKELINFILSALSKEEISPQNLEFEITEGVLMVGNAYVEEALEELHQLGVKLSMDDFGTGYSSLSYLRRYSFDILKIDRSFIDGITVNKEDFDLVKATIAMAHSLDLEVVAEGVETHEQLMLLDKLGCDLVQGYYFSKPVPAQALIDYRYPAS
>NC_008228.1|WP_011576171.1|4120932_4121865_+|PEP-CTERM-sorting-domain-containing-protein
MNNLTLPLSSGLNYLLKKTRRTLCVSGASLLMFVSSTASATPISDMYVFGDSLSDTGALKTLLPAACPTAPYFDCRFSNGPVWVEHLASDLGVSASTAYTGGTNWAIGGQRTDNLFADPNFGGQLFNYLGSAGGMADADALYVIWAGGNDFLQNDPVGTYTPGDAAQNIVDSVTTLAMAGAMNFLVPNLPIAAPWAFEFNAALANGLDGISGGLNITQLDVFSTFLDISMNPSDYDLTNVSAPCVDSANMTVCTNPDEYLLWDQVHPTAVGHQLIASAALAALAVPEPALLALFGFGMLALVRTRRKVFP
>NC_008228.1|WP_011576170.1|4118990_4120673_+|phosphoethanolamine--lipid-A-transferase
MNKAAAQTPIRSEWLRAFKIPPQLVMLLAALFVTLTGNHTFFGHLETIYSWQNNALFICSVGAILWALTSIVSIVLNWFMPVKLALSIVLITGAICSYFTDGFGVIFDIDMMRNMFATDTSEAADILNFGLLNHVLLFGAIPIVFFNLLPLNKQPRLKDIKRRFLMTGFTLVIGISVIGGSLFAFSGQYASFFREHKSVRYYTNPIQPMYSFVAFLTQKVRSAASRQFVFQTSRAAIPDTDLNRELVIVVVGETARADHFSVNGYERETTPLLAKETDLVSFSQISSCGTSTAVSVPCMFSILGRDDFDADNSKTTENVLDIVAKANISVQWRDNNSDSKGVAERIPYISYKTSETNPVCDEKRQPKEQKYRECRDEGMLDGLQEFINGQEQDILIVLHQMGSHGPAYSKRYPSAFEKFTPACQTSELSMCSDEEIINAYDNTILYTDYFLAKVIGLLKRNTPRYETAMIYVSDHGESLGENKVYLHGLPYMFAPKAQTHVPIIVWAGASSDIDIAKTRELKDLPNSHDALAQAILLSMEVDSDVKLPPMFPLLVMKSDD
>NC_008228.1|WP_011576169.1|4117045_4118794_-|ATP-binding-cassette-domain-containing-protein
MKAVKTLTLMRWLFGQLAPYKTKVMCAISALIVGSGSWLLLGQGVKVVVDEGFVANNATMLNQMMLVVVGIALLGSIAAYFRFYLMIWLGERVSADIRQSVYSHLLTLPPAFFERTRTGEVISRFTSDTTVLQSVVGMGLSMALRAGITFIGALLLMLITSPMLTLYVLIAVPIVLLPIRFFGAKVRLHARNSQDRVADLGAYVDESLHEIHTVQAYSHEDLDRSKFAGRVEDVMTAANSRIRFRALMMATIMGISMTAITLVAWLGAQQVLTASISAGELTAFMFYAVMAGGAVATLSEVIGEVQKAAGASERLMELLHTKSEVLEPETPQLLAKKVQGNLTLTDVNFSYPSAVDSPALQHISLDIKAGERIALVGPSGAGKSSLFQLLLRFYDIQSGEISLEGVNIAELELESLRQQYALVPQESVIFASSVAENIRYGRPDASDEDVQAAAKAARADEFIEQLPEGYQTYLGERGVRLSGGQKQRISIARAILADRPILLLDEATSSLDAANEQFIKLALDELMREKTTLIIAHRLATVINADRIVVMDKGQIVAIGNHQELIASNALYREFAELQLVS
>NC_008228.1|WP_157043422.1|4136203_4136422_+|hypothetical-protein
MDAFHKRSRSPASHFSRQLLPALLYLPTSMLVACASRLTLAVKTRSRRGFHLNDIHVINPVSVFDALGDLSR
>NC_008228.1|WP_011576179.1|4137366_4137651_+|helix-turn-helix-domain-containing-protein
MSVFDELKASLEEAVVIEQGQRKAARVTSYEVADVKAIRAQLNVSQIEFAAVLGTSVDTIKSWEKRRRNPTGLAAKVLATIKDNPAVYQELARH
>NC_008228.1|WP_011576180.1|4138628_4139237_+|hypothetical-protein
MEFTNKRTMLISASLVLLVAITQIIYTALYVAEVGFSRQVLWGLEALIFTVLVAFAGASMVQAKNCQLGWSAIAFSAAINIVQVSIGLTLFSTFGKVAGSVEGAQPLIGGVVALSFMIYYAAKVLLGLAALVFGMASIAKGGKAIGGITALAGVVAMFANGILITFSRDGFLPSGVAGGSGVIATLLLAICLISLYSKEDYG
>NC_008228.1|WP_011576181.1|4140710_4140992_-|hypothetical-protein
MKAKDASIDRLIDHDLKSNKPEQSAYAKQIRLLNRKYEENVARYRYGKKVFGELKSEIQRTLKTNPDLFKETEFIKNQTLVKIFSEQELIRDA
>NC_008228.1|WP_011575376.1|4141104_4142313_+|IS4-family-transposase
MRDIHILHDLLKKQCPNLHAKRLSSLMVATQSLLDGQQLSLTELGRNISGSVAPKHNIKRIDRLLGNNNLHNERLDIYRWHARLLCGANPMPVVLVDWSDVREQLRHLTLRASVSVQGRSVTLYERVFSFGEYNSPVSHNPFLRELASILPSGCCPLIVTDAGYRNPWFREVEKHGWFWLGRVRGDVGFKRDGQASWQSNKSFYPSANSRAKYLGCGQLGRKSPLHAHLHLYKAKAKHRKDNRSSKAGRNHTAQQSYRAGSKEPWLLATNLPENDKLNSKQLVSLYARRMQIEETFRDIKSPQYGMGLRHSNSRCTKRFDILLLIAMLAEWLLRLLGIIAQKQNWERAFQANTIRHRRVLSIIRLGREVRKRAKDYRMNSAQMTWAIAQYITWVHKEGRPIL
>NC_008228.1|WP_157043423.1|4142275_4143853_-|AAA-family-ATPase
MESPSYMEIIKSVQIRKFRSLKSVTKNLEFSDLNIFVGQNDQGKSNLLRALNLFFNNETDLDTRFRFSEDYCYHSNTGKGTRNEIRIDLVIEPPKRRFKHAKPLRWTKRWRKDGSIIEERKYIESGNEVPSRDGVSQWLDKIRYRYIPAIKGQNYFLALMGELYDVLNEAYADILSTQGEEFISGIQNITKGITEDLSEQIGISNTIQVPSDFKQLFSNLDFGVRVSGNTYHLKQRGDGIKIRHIPVILKYMSEQERSISRAGYVKPDTIWGFEEPENNLELRYAFELAKTFKEYSKDIQIFITTHSPAFYALDKTDGDNVNTFYISQGEDNCTQVDVVSHDKTNELHESMGLLPIITPYLTKIYEHQSEIENLKSKLIQLEDSIRFVVLTEDEKHEHVISYFKAQGCNEEVTEFYSYLGANQISSALILGQYLKDKKPDIHVIIHRDRDYYNDKDIESMRNRVEKKGFTFFVTKGVDLESEYICPKHINALYQEISLEKAETLIHSATLGDPLIELVSLLCEPR
>NC_008228.1|WP_011576183.1|4143956_4144598_-|hypothetical-protein
MKSRDLYTRHDLIASNYTVTELSNGKFLHKFTPSTTDTIYQFEANGSLIIVEGERYNIGFFIDENNNNIIELSALSKTSEVSPMFSYAYSLQLAREDHIVEKEKNDTRVTHNATDGYYWGKKYAWRMFGTVISDNAFFRYLKEINHPTVPCVTNNPDMPYSSDPSTAYKEEGLEDAMRNLISTAEKVTPAYFKSPLYSKKFSIKGIKAITDKK
>NC_008228.1|WP_011576185.1|4145800_4147093_+|MFS-transporter
MNAETRSYRRYVLFILTLVYIFNFVDRQILVILQEPIKAELGLSDTQLGLLTGFAFALFYVVVGIPIARWADVGNRRNIVSLALVVWSGMTAVSGLAQNYTQLLLARIGVGIGEAGASPPSHSMISDYYAPEERGAAMSIYSMGLYLGILVGLLLGGWLADKIGWRMAFFAVGLPGILMAVVVRLTLKEPPRGGSGMVSDPNVGEKYTFKQTLGFLWKSKPFRKAAFAAGFCAFTGYSTLTFIPSFLIRSHGMSIAEVGVSLGLIIGFSGVIGALSGGFLADKFGKMNLRWYMWVPAIGVLLSVPFSLLALSLDSLTLVLVCIFISNVFGSCYLGPTIAISHHLVKPSMRATTSAILFFILNIVGLGCGPVVTGVVSDYFAPEYGSESLRYALVFSSLVILLAVVQYIRSGSALSAHEAAKPSPKEPASV
>NC_008228.1|WP_011576186.1|4147127_4148921_-|DEAD/DEAH-box-helicase
MSQAFILRDYQTQAVDAALAHFRQSDDPAVIVLPTGAGKSLVIAELSRLAKGRVICLAHVKELVEQNHAKFLATGSSAGLFSAGLGQKDSNLKTTFASIQSLSANLEAFDAPASLIIIDECHRVGLADSAQYNKTLEHFRRLNPKVKMLGLTATPYRLGSGWIYQHHYHGYTRPSAQSFFKKCIFELPLQYMVKNHYLTPPIHYDAAVAHYDFSLLTESLDGEQNTDDIALNELIDKHPRVTKAVTEQILQLSQDRQGVMIFAATIDHAKEICGYLPPQQTALITGTTKIKQRDTLIAAFKAKHIKYLVNVSVLTTGFDAPHVDVIAILRPTQSISLFQQIVGRGLRLSPGKKDCLVLDYTNNGYDIFQPEIGEKKPTPDSVAVQVHCPQCGFANAFWGRKDAEGHILEHFGRRCQGLIESPDASDSPNTVDGPQLTMQCSYRFRFKHCPYCNQENDIAARQCHHCNEKLIDPDDILRKALNLNNNKVLRCAAITPVINQADKSIKITYHDEDGLTLSETFRFNYKKARQRFNDLFARRLASATQSIHFESIEELQPFLPYLPTPDFVIAKKQKHHWQVTERLFDYQGPYRKANALG
>NC_008228.1|WP_157043467.1|4148998_4150165_-|nucleoside-phosphatase
MASPKNICHIIYDAGSSGTRLFVYEESGTNLIAHSGPKVRAIADPLRGINESQVTDIDSIVSDVISTLDLIKSDGDLHKGKPRWVGFDWVNQCNVVSARIYATAGMRIAEQSNPEGSLIMWQTLTQKLAEKFGSEVLIETKTVTGFEEGLFAWLSVQDTYIATDFGIVDMGGASSQVTFACPDCSLADDAVKKVRLNGKPIQIYSYSYLGLGQDEAPKSLTSPVIDPVPKNCAFGIGATQKEWSVADCADDILLTIDGTSSEIKDPYNYSWPRKKGTTRSKGATNTLPDPQKNIPKWTLTGAFNYKKETDINQCCFNKSHACYKAQTACFIPIYLDKYLQTLNISPAQTTTKDVSWTRGAVLCEIENCLADVATPPVCRWMASGCLRH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

761790 : 804853

Vibrio_phage(29.41%)

head,tRNA,integrase,tail,capsid,portal

attL 773779:773794|attR 807361:807376

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011573550.1\|761790_762804_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_011573551.1\|762827_763514_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_011573552.1\|763829_764555_+	hypothetical protein	NA	NA	NA	NA
WP_006990750.1\|764792_765098_+	hypothetical protein	NA	NA	NA	NA
WP_011573553.1\|765103_765301_+	DUF2970 domain-containing protein	NA	NA	NA	NA
WP_011573554.1\|765347_766181_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L1V5	Vibrio_phage	3.2e-66	49.1
WP_041713261.1\|766273_767812_-	cell division protein DamX	NA	NA	NA	NA
WP_011573556.1\|767935_769003_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_006990745.1\|769035_769551_-	shikimate kinase AroK	NA	NA	NA	NA
WP_011573557.1\|769785_771528_-	type IV pilus secretin PilQ family protein	NA	NA	NA	NA
WP_011573558.1\|771520_772054_-	pilus assembly protein PilP	NA	NA	NA	NA
WP_011573559.1\|772050_772662_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA
WP_011573560.1\|772662_773244_-	PilN domain-containing protein	NA	NA	NA	NA
WP_011573561.1\|773231_774362_-	pilus assembly protein PilM	NA	NA	NA	NA
773779:773794	attL	NA	NA	NA	NA
WP_011573562.1\|774616_775849_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	2.2e-31	27.8
WP_011573563.1\|776393_777047_-	hypothetical protein	NA	NA	NA	NA
WP_011573564.1\|777782_778517_-	hypothetical protein	NA	NA	NA	NA
WP_011573565.1\|779074_779485_-	hypothetical protein	NA	NA	NA	NA
WP_011573566.1\|779592_780189_-	hypothetical protein	NA	NA	NA	NA
WP_041713265.1\|780203_780707_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041713267.1\|780834_781044_+	hypothetical protein	NA	NA	NA	NA
WP_011573568.1\|781045_781546_+	hypothetical protein	NA	NA	NA	NA
WP_011573569.1\|781557_781851_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011573570.1\|781918_782467_+	hypothetical protein	NA	NA	NA	NA
WP_049765930.1\|782478_783159_+	site-specific DNA-methyltransferase	A0A2N9QVT4	Dishui_lake_phycodnavirus	1.3e-12	30.4
WP_011573572.1\|783169_783427_+	hypothetical protein	NA	NA	NA	NA
WP_011573573.1\|783480_783990_+	hypothetical protein	NA	NA	NA	NA
WP_011573574.1\|783982_784516_+	hypothetical protein	NA	NA	NA	NA
WP_011573575.1\|784515_784758_+	hypothetical protein	A0A1V0E8D1	Vibrio_phage	2.3e-09	60.0
WP_011573576.1\|784754_785525_+	HNH endonuclease	M1PKJ5	Streptococcus_phage	2.4e-20	30.7
WP_011573577.1\|785527_788209_+	replication endonuclease	Q19US8	Mannheimia_phage	8.3e-76	32.9
WP_041713271.1\|788243_788837_-	hypothetical protein	NA	NA	NA	NA
WP_011573579.1\|789095_789674_+	hypothetical protein	NA	NA	NA	NA
WP_011573580.1\|789734_790508_+	hypothetical protein	NA	NA	NA	NA
WP_011573581.1\|790562_790808_-	ogr/Delta-like zinc finger family protein	A0A1L5C2B5	Pseudoalteromonas_phage	1.9e-19	59.5
WP_011573582.1\|790978_791593_+	hypothetical protein	NA	NA	NA	NA
WP_011573583.1\|791613_792630_-\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.9e-68	55.8
WP_011573584.1\|792630_794364_-	hypothetical protein	A0A1L5C295	Pseudoalteromonas_phage	4.8e-149	47.5
WP_011573585.1\|794592_795474_+\|capsid	phage capsid scaffolding	Q94MZ5	Haemophilus_virus	2.6e-34	38.9
WP_011573586.1\|795528_796563_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	6.0e-83	47.9
WP_011573587.1\|796657_797503_+	hypothetical protein	A0A0U4JEJ1	Pseudomonas_phage	4.4e-23	31.4
WP_081429920.1\|797591_798068_+\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_011573589.1\|798067_798526_+\|tail	phage tail protein	NA	NA	NA	NA
WP_011573590.1\|798518_799208_+	hypothetical protein	R9TPZ7	Vibrio_phage	4.8e-12	29.8
WP_011573591.1\|799223_800330_+	DUF2586 domain-containing protein	A0A0U4KLE6	Pseudomonas_phage	3.0e-96	52.4
WP_011573592.1\|800333_800783_+	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	1.4e-36	50.0
WP_011573593.1\|800783_801383_+	hypothetical protein	NA	NA	NA	NA
WP_011573594.1\|801379_801865_+	hypothetical protein	A0A2I7RB84	Vibrio_phage	2.6e-36	45.6
WP_011573595.1\|801876_802167_+	hypothetical protein	NA	NA	NA	NA
WP_011573596.1\|802205_802499_+	hypothetical protein	NA	NA	NA	NA
WP_011573598.1\|802723_804853_+\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	2.6e-120	43.3
807361:807376	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2982283 : 2990814

uncultured_Caudovirales_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006991166.1\|2982283_2982952_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-42	47.0
WP_011575240.1\|2983027_2983417_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	5.9e-15	40.0
WP_049765888.1\|2983413_2983776_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_011575242.1\|2983776_2984091_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_081429979.1\|2984174_2984513_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.1e-22	50.5
WP_011575244.1\|2984604_2985903_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.6e-95	44.1
WP_011575245.1\|2985913_2986297_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.3e-10	35.8
WP_011575246.1\|2986297_2987635_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.9e-85	40.5
WP_041713789.1\|2987634_2988297_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_011575248.1\|2988300_2990814_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	6.4e-86	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008228

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection