CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008319	Synechococcus sp. CC9311, complete sequence	0 crisprs	cas3,DEDDh	0	0	1	0

1. NC_008319

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1905386 : 1912803	9	Yellowstone_lake_phycodnavirus(16.67%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_008319|1905386:1912803|DBSCAN-SWA
TTCAGGCTAAGAGCTTGCCGGCGATCAGTCGCTGTCTTGCTCGATCTGGCTCGGCCCAGACCACCTCACCCTCTTTGTGTTGCACCGTTCCAAGAGCTGCACCTGCAATGCGTTGGAGATGCTCCACAGGGGCTCTGACGACAGCAACCCGGCGATTACCACGCGCGCGGCTAAACCACGCAGCGAGGTCAGCAGCAAGGGTGACATCATCTTCGTCCGCAAAACCAGCCGATGCCTTCAACACAACGTGACTACCCGGACATTCCTGGGCATGGAACCAAAGGTCACCAGGTCGTGCCCGCCGGAGACTGATCCAGTCGTTTTGACGATGATTTCGCCCCACTTGAATCAACAATCCCGCCGGGCTATGGATTTCGAGGGGCTGAGGGTCCACGCGACGGGATCCCTGACGACGGCGGCGACGAAGCCGTTTTGGAGCCAACAGATCATCCAACTCTTCTCGCAAGTCCAGAAGGCTTTTCGTGCGCGCCTTTAACCCATCCCAATCAGCACCAATCAGCTCTTCCAGAAAGCTTTCACTGCCCTCAAGTAACACCAGCCGACTTTGATGATGCTGCAGCCGTTCTTCAAGAGCCGGCACAGCTCGTCTCAGTTTTCGTGCTCTGCCATACAACTTCTGCGCGCGATCGATTGTTTCCCGATTCGGACTCACCTGACACAGCAACGAATCTCCCTGCTGTTGCAAATCATCGGCACCGTGGGTCTCCTCCAAGCCAGCTCTCTGGTCAGCCAATAGGGCCTCCTCACGAGTCCTTAACTGCTTGAGCTGCTTTTGCAAATCCTGAGTGGCACGATTCAACTCCTGATGTTGAAGAACAGTGGCGTAGTACTGACCCAAACGCAGGCTTAGGGGCTGCCCAGGTTCTGGAAGATCCGCCAACGACTCCCCTTCAGATGCCGATGAAGGATTCCAAACGCGATAGGAGTTAGGCCCATCAAATTGCAGCTCAAAACTGTCGGTCTCAAGCGCTTTCAACCAGCACTGCCAACGCTGGTGCAACACCTGCCAGTCCTGGTCGCTTAGCTCATGAACGCTTGTTGCTAATCGCGCTCTGGCAGCGTCTTCATGCTCGCCAGCAAGATGCTTCGCCAGCACCGGACTGATGCCCTGGTAGGCACTGCGCAGGGCCTTCTCCAGGCTTAGCGGCAACAGTTCCAAGCGCTCTCTCCAGCGCTGCTCAGGCTCATCGAGTCGAGGAGCGATGCCTTGAAGGGCTGGGGGAGCGCTGTAGACATCTCCCGTACCAATCGGTCTCACTCTCGACTGGTGCATGCGGACCTGGCGTGCGATCGCAGTGATGCGTTGTCGGTCATCGAGTAACAACAAATTGCTATGACGCCCCATCAGTTCGAGCACCAAGGTGCGCTGGGGAGGCTGTCCAGGTCGAGGCGCCAACTGAAATTGCACAACCCGTTCAAAACCTTCCTGGCTGAGCTCCGAAAGCGCAAGTTGGCGGAGTCCATGCTGAATTTGTTGCGCCAACGTGCTTCCTGCACCCTGCTTGGGTGGCGCGGAGATTTCAACCAGTCTGGGAACTTCTGCTTTCCAGCTCAGCTCCAACCAAATCATGCCTCGCAGAGTGCGAAATCCGAGCTGAAGCGTCTGAGGATCGGGCTGTTGAGCTTTCTCAAACCGGCTGGGTATTAATCGGGCACGTAAATCCGCCAGCACAGCCTTCAGGCTGGTGAGATCCATCACTTGCGGACTTTGGCTGGCCATGAATTGCCTGAGAAGCAGGCTGAATAGGAAGCCTTCCTACCCTGCGATGCAGTCTCAAGCAACGTATGGCTCCTGATGGATCAATCGCCAGGCCCACGGTGCTCACCGGGCCGAGCGGCGTCGGTAAGGGCACCTTGGTCGCCCGCCTGAGAGAGCGTCATCCAGAGATATGGCTCTCCGTGTCGGCCACCACACGTGCTCCACGCAGTGGAGAAATCGATGGAATTCACTATTTTTTTCACTCCAAAGAACGGTTCAACAAACTCGTTCAAAGCGGTGGCTTGCTGGAGTGGGCTGAATTCGCTGGAAACTGCTACGGAACACCTAGAGAACCCGTAAGTGAACGCGTCGCGAATGGCATTCCCGTGCTTCTTGAAATTGAATTGGAGGGCGCCAGACAGGTTAGGAAAAGCTTGCCAGAAGCAATCCAAATTTTTCTTGCACCGCCAAGTGTAGAAGAGCTGGAGAAACGGATTCGCGGCCGCGGAACCGAAGCAGAAGAGGCGATCCAGCGCCGACTGAAGCGAGCACAAGAAGAACTAGAAGCTCAAACAGAATTCGATGCTGTGATCGTCAACGACGATCTTGAAACAGCTTTAGCTGAGTTGGAAAAACAGATGAACTTGACTATCTCCTAAATAAAAAGAGGGGCCATTGGGCCCCTCTTTGATGGTCTTGTGAACTGAACGATCAGCCCATGGGGTGGAAGAGGAGATCAGGGAAAAAGCGATTCCACTCGATCAAGATTCCGGCGGTGAGAGTGAACCAAATCGCCGCAACGACAGGTGCAGTTGTAAGAAATTTCTTCATCGTGAAAAAGATAAGGACTTCGTGGTGCGAGTTCAGCGAGGAGAGACGGTCACCTTGTTGTCGCTTTCAAGCAATTTGCCACTCGTGAATTCACCAAAAGCAGCGACAGGCCAAGTGGCTGATGCCAACAAGGACTTGAGGGCAAGAGAGACATCAATTTGAATCTCTTTCGTGTACTGCTCCTTGGTACCGCGAGTGCCTTTGAGGTACTCACGACCTGCCCAGCCAATGCATCCATTGATGTAGAGGAACATCAGGCCTGGGAAGACGAAATCACCGGCATGGCTCCAGCGGCCATCAACGATCAAATGAGGCAGCCCATCTTCACCACAAACGGCCTCGCTATACATCTCGAAGCGAGCCTTAGCTTGAGGCGTGGCGGCAGCGCTTGCACGCTGCTGAAAACGGGCACTTTCGGCGCAAGGTGTCAGACCTGCTACATCAGCCTTGGCGACGGGGGCAAAGCCGAACACCAGCAGGGCCGAGAGCGCAAGAGCGAAGAGACGACGCATCGGAACGGTTCCTGTTGAGCCTGCCCCAAAGCGGCAGGATGTCACAAACGGACAGTAGGGGAGATCCCTCCATCTTCATGCCCACAGTGCTTGGCCTCGAAACAAGTTGTGACGAGTCAGCCGCGGCGGTGCTCCGCCAGGAGGGCGATCAACTCACAGTGTTGTCCCATGGCATCGCCTCCCAGGTTGAGGAGCATGCGCAATGGGGTGGGGTCGTGCCTGAGATTGCCTCACGACGGCATGTGGAAGCGCTCCCAAACCTCGTAGAGCACGCCTTAAAAGACGCTGGTCTCATTGCTGCCGACCTTGATGCCATCGCGGCAACCGTGGCACCTGGCTTGGTTGGAGCCCTCATGGTGGGCTCCATCACCGGGCGGACACTCGCGGCCCTGCATCAGAAACCCTTCCTCGCCGTTCACCATCTGGAGGCGCACCTGGCTTCCGTGTTCCTGGCAGATCAGCCACCAAAGGCTCCTTATCTCGTACTTCTCGTGAGTGGCGGTCACACCGAACTCATCCGGGTGGATCAGCGCGGAGAGATGAAACGCCTGGGACGAAGCCATGACGATGCGGCCGGTGAAGCTTTCGACAAAGTGGCTCGACTCATGGGCTTGGGCTACCCAGGAGGTCCTGCGATTCAGGCCATCGCCGTGGAGGGCGATGCAAAACGGTTTCGGTTACCAAAAGGGCGCGTTTCCAAGCCAGAAGGAGGCTTCTATCCCTATGACTTTTCATTTAGTGGGCTGAAAACTGCGGTGCTTCGGCATGTGGAAGCGTTGAAGCGTGAATCGGAGGAGCTTCCTCTGGCTGATCTCGCGGCCAGCTTTGAACAGATCGTGGCCGATGTGCTGGTGGAGCGAAGCCTGCGCTGCTGCCTAGAGCAGGGGATTGATCAATTGGTCATGGTTGGCGGCGTTGCCGCTAACCAGCGCCTGCGTTCTCTAATGCATGCTGTCGGCCAGTCAAAGGGGGTGTCAGTACACATCGCCCCTTTGGCCTATTGCACGGACAACGCAGCAATGGTTGCCGTAGCAGCATTGCGTCGACTTTCAAGCGGCGTGAAATCCAGCTCCCTAGAGCTAGGCGTCTCAGCACGATGGCCATTAGAGAAAGCATTAAGCCTTTATGGCTCAACACCCCCCTTTTGAAATTATTCTCTTAAGGTTGCCTCCACTGAGATCCTTCCTAATGGCTCCTAAAACCGATCTCCAACAAAACGTTGTGGCAGAGCAAATTGATCCGATCGAGCTGAATGCTTGGAAGCGAGGAATTACTCCCCAAGCTGAAATTTGGAATGGACGTCTTGCCATGCTCGGACTTTCCATCGGCATGGCAACTCTGTTAATCGTCCGGATGTTTAACAACGCGGCCTGAAAGCTTCAACTTCTACCCCTTAAAGCCTGAGTGAGTTCATTCGGGCGAGGGCTAACGGCTATCGCCTTCTCAGCTTCGACTTGCCCAGATTCAACCAAACGTTGCAAGGACTGATTGGCGGTCATCATTCCATCAAACTCGCTTCTCTGCATGATGTCTTCAACATCATCAAGTGTTCCTTTTTTAATATAGTCCTTACATGCATCAGTATTAATCATTAGGTCATGATACGCGGTACGTTTGCCGCCAGCACTCTGTATTAATCCCTGAGAAACAATTCCCATTAGCGATTCCGCTAAAGACTGACGAACACTTTCCTGTTCTTCAGGTTGGTACATTCCAAGCACTCGCTCAACGGTCTTAACCGCAGAGTTTGTATGCAAAGTTCCAAACACAAGATGCCCAGTCTGAGCCGCCTCCATCGCGGTACTTAGGGTTTCTTTGTCACGAATTTCACCAACCAAAATAACATCAGGATCTTCACGCAACGCCGCTCTCAAAGCATGATGAAACTGGAGTGTGTGTCGTCCAACCTCACGCTGTCGGATAAGAGACTGCCGGCTTTCATGCACGAATTCAATGGGATCCTCAATCGTGAGGATATGCCTACTTTGATTGTTATTAATCCAATCAATCATGGCTGCCAGCGTGGTGCTTTTACCGGAGCCTGTAGGCCCAGTGACAAGCAGCAACCCTTTGGGATGAGCGCAAAGGACTTGAAGAACAGACGGCAGCTTTAGATCATCCATCGACAGGATCTTTTGAGGAATGAGGCGCAACACCATCGCCGCTCCCTTCAAAGCATCGAACAAGTTGATGCGGACCCTTACGAAAGAGAAGGCATGAGCCCCGTCGAACTCTTTGCACTGTCTGAAGTGGTCGATCTGCTGGGGAGTGAGTAATTCTCCTAGCCAATCCTGAAACTCGCCGGGTTTCGTGGGAGGCCAATCGGAGCGAATGATCTCGCCACGAGCTCGAAATCTTGGGCTCTCCCCGATCCCAAGATGAACGTCGGAATGCCCCTGTTCATACGCGATACGCACGATCTGCTCTAAAGACGTAGGCGGTGAAGCCGACGACTGTGGAGCTGAAGATGGTGTGAACGTGGGCTTGGCTGGGATGCCAGGAGGAAAAACGGGCTGACTCATGCTGGTGGTGTCCGCTGTATGCAGCTTCGCGATGCTTCGTCAGCTGGCAAGTGATTCACCAAACCTCTAGGGGAGTTCGCCCTTAGGATTACCGCACAATCTGGATGGTTATGGCCCGCCTGCCACGCGTGACGATCGTCTTGGGCACAAGGCCTGAAGCCATCAAATTGGCGCCTGTGATCCAAGAATTCCGGGCCAGTAAGGACCTGGAAACACGAGTTGTGCTGACAGGGCAGCACAGAGAAATGGTGTCGCAAGTGATGGATTTGTTTGGCCTGAGCGCCGATCTGGATCTCAATTTGATGGCCCCTCGACAAACCCTCACGCACGTGACCTGTGCGGCGCTGCAGGGATTACGTGATGACTTCCAAGCGTTTCCTCCAAAGCTCGTGCTGGTTCAAGGAGACACAACCACGGCCTTCGCTGCAGCCCTCTCCGCCTTCTACGAACAAATTCCTGTTGGACACGTTGAGGCAGGACTGCGAACAGACAACCTTCTCGATCCTTTTCCAGAAGAAGCGAACCGTCGATTGATCTCGCAAATTTCTCATCTTCACTTTGCTCCCACCAAGCAATCAGAAGCCAACCTTCAAGCGTCTGGGGTGGTTGGGCGCGTGCTGCTTACGGGCAACACTGTGATCGATGCTCTGCTGCGAATGTCCGAACGCGCTCCTGCGTTAAGCGACTTATCCATCGATTGGGACGCGCAAAGGGTGATTTTGGCGACTGTTCACCGTCGTGAGAATTGGGGTGACCGCCTCAAGAACATTGCGGATGGAATGCTCCGTGTTCTCGACAGCCATCCCGACACCGTGTTGCTGTTGCCCTTGCATCGCAACCCAACCGTGCGTGAACCACTCCAGGCACTACTAGGGGAGCATCCACGTGTGGTGCTAACCGAGCCACTGGATTACGACCGCTTGGTGGCAGCCATGAAAGGCTGCACTCTTTTACTCACTGACTCCGGTGGGTTGCAGGAAGAAGCGCCAGCACTCGGAAAACCGGTTCTTGTCCTGCGTGAAACCACGGAACGCCCCGAAGCTGTTGAAGCCGGCACAGCCCAATTGGTGGGGACTGATCCAACCGCGATTCACCGTGAAGCATCCCTGTTATTAGACGACAGTGAGGCCTACAACGCCATGGCGAAAGCCGTGAATCCCTTTGGTGATGGCCACGCGAGTGAAAGGATTCTCGGGGCTGCTCTTGAGCTGTTGGCAAGCTGAAGCAACGTTCAGTCCTTGCGGTGCCTACCGCTGGGAGCTGCATCGGCCCATTCCATCCAGGGATCACAGGTCCGAACAGAGGAGGGTGCTTCTGTTCATTGGCCTGAACCCGTCGCGAGCCGATGGGCTTCGAGACGACCCCACCCTGCGAAGGCTTCAAAGGTTTTCACAACACTGGGAGTATCACCATCTCGTGGTGCTGAATCTCTTTGCCCGCATCTCCCCCTCCCCCTCACTGCTTTGCCGTTGCGCTGAGCCAATCGGCGCTGAGAACGATCTGATCCTGCACAGCTGGTTCCAGCAGTGGGCGCAGCAGCCCACATGGGATCTCTGGATGGGATGGGGGGTCGGCGGACGACTGATGCAACGGGATAAGGCGGTTTTGAGAATGTTGAACGACGTCAGCGATCAACGAGGAGTGCTTCCACCTCCTTTTGTGACTGGTTTGACCAAAGCGGGCGATCCCCGCCACCCCCTCTACCTTCCCAGTGATGTGCAGAGAGTTGCCTGGGCAGTACCGTTCCTAGATGAACCGCACTCCGCGCCGGTATCGGATCTCCCTTCACCTGTCTGGCGGACAGACCGAAGTGGTGCATTTCACGTCACTTGA

Protein sequences of DBSCAN-SWA_1

>NC_008319|1905386:1912803|1909636_1909822_+|WP_041426660.1|DBSCAN-SWA
MAPKTDLQQNVVAEQIDPIELNAWKRGITPQAEIWNGRLAMLGLSIGMATLLIVRMFNNAA
>NC_008319|1905386:1912803|1907191_1907764_+|WP_011620066.1|DBSCAN-SWA
MAPDGSIARPTVLTGPSGVGKGTLVARLRERHPEIWLSVSATTRAPRSGEIDGIHYFFHSKERFNKLVQSGGLLEWAEFAGNCYGTPREPVSERVANGIPVLLEIELEGARQVRKSLPEAIQIFLAPPSVEELEKRIRGRGTEAEEAIQRRLKRAQEELEAQTEFDAVIVNDDLETALAELEKQMNLTIS
>NC_008319|1905386:1912803|1908525_1909596_+|WP_011620069.1|tRNA|DBSCAN-SWA
MPTVLGLETSCDESAAAVLRQEGDQLTVLSHGIASQVEEHAQWGGVVPEIASRRHVEALPNLVEHALKDAGLIAADLDAIAATVAPGLVGALMVGSITGRTLAALHQKPFLAVHHLEAHLASVFLADQPPKAPYLVLLVSGGHTELIRVDQRGEMKRLGRSHDDAAGEAFDKVARLMGLGYPGGPAIQAIAVEGDAKRFRLPKGRVSKPEGGFYPYDFSFSGLKTAVLRHVEALKRESEELPLADLAASFEQIVADVLVERSLRCCLEQGIDQLVMVGGVAANQRLRSLMHAVGQSKGVSVHIAPLAYCTDNAAMVAVAALRRLSSGVKSSSLELGVSARWPLEKALSLYGSTPPF
>NC_008319|1905386:1912803|1905386_1907126_-|WP_011620065.1|DBSCAN-SWA
MASQSPQVMDLTSLKAVLADLRARLIPSRFEKAQQPDPQTLQLGFRTLRGMIWLELSWKAEVPRLVEISAPPKQGAGSTLAQQIQHGLRQLALSELSQEGFERVVQFQLAPRPGQPPQRTLVLELMGRHSNLLLLDDRQRITAIARQVRMHQSRVRPIGTGDVYSAPPALQGIAPRLDEPEQRWRERLELLPLSLEKALRSAYQGISPVLAKHLAGEHEDAARARLATSVHELSDQDWQVLHQRWQCWLKALETDSFELQFDGPNSYRVWNPSSASEGESLADLPEPGQPLSLRLGQYYATVLQHQELNRATQDLQKQLKQLRTREEALLADQRAGLEETHGADDLQQQGDSLLCQVSPNRETIDRAQKLYGRARKLRRAVPALEERLQHHQSRLVLLEGSESFLEELIGADWDGLKARTKSLLDLREELDDLLAPKRLRRRRRQGSRRVDPQPLEIHSPAGLLIQVGRNHRQNDWISLRRARPGDLWFHAQECPGSHVVLKASAGFADEDDVTLAADLAAWFSRARGNRRVAVVRAPVEHLQRIAGAALGTVQHKEGEVVWAEPDRARQRLIAGKLLA
>NC_008319|1905386:1912803|1907816_1907936_-|WP_011620067.1|DBSCAN-SWA
MKKFLTTAPVVAAIWFTLTAGILIEWNRFFPDLLFHPMG
>NC_008319|1905386:1912803|1907968_1908448_-|WP_011620068.1|DBSCAN-SWA
MRRLFALALSALLVFGFAPVAKADVAGLTPCAESARFQQRASAAATPQAKARFEMYSEAVCGEDGLPHLIVDGRWSHAGDFVFPGLMFLYINGCIGWAGREYLKGTRGTKEQYTKEIQIDVSLALKSLLASATWPVAAFGEFTSGKLLESDNKVTVSPR
>NC_008319|1905386:1912803|1912137_1912803_+|WP_011620073.1|DBSCAN-SWA
MATRVKGFSGLLLSCWQAEATFSPCGAYRWELHRPIPSRDHRSEQRRVLLFIGLNPSRADGLRDDPTLRRLQRFSQHWEYHHLVVLNLFARISPSPSLLCRCAEPIGAENDLILHSWFQQWAQQPTWDLWMGWGVGGRLMQRDKAVLRMLNDVSDQRGVLPPPFVTGLTKAGDPRHPLYLPSDVQRVAWAVPFLDEPHSAPVSDLPSPVWRTDRSGAFHVT
>NC_008319|1905386:1912803|1909827_1910970_-|WP_011620071.1|DBSCAN-SWA
MSQPVFPPGIPAKPTFTPSSAPQSSASPPTSLEQIVRIAYEQGHSDVHLGIGESPRFRARGEIIRSDWPPTKPGEFQDWLGELLTPQQIDHFRQCKEFDGAHAFSFVRVRINLFDALKGAAMVLRLIPQKILSMDDLKLPSVLQVLCAHPKGLLLVTGPTGSGKSTTLAAMIDWINNNQSRHILTIEDPIEFVHESRQSLIRQREVGRHTLQFHHALRAALREDPDVILVGEIRDKETLSTAMEAAQTGHLVFGTLHTNSAVKTVERVLGMYQPEEQESVRQSLAESLMGIVSQGLIQSAGGKRTAYHDLMINTDACKDYIKKGTLDDVEDIMQRSEFDGMMTANQSLQRLVESGQVEAEKAIAVSPRPNELTQALRGRS
>NC_008319|1905386:1912803|1911080_1912193_+|WP_011620072.1|DBSCAN-SWA
MARLPRVTIVLGTRPEAIKLAPVIQEFRASKDLETRVVLTGQHREMVSQVMDLFGLSADLDLNLMAPRQTLTHVTCAALQGLRDDFQAFPPKLVLVQGDTTTAFAAALSAFYEQIPVGHVEAGLRTDNLLDPFPEEANRRLISQISHLHFAPTKQSEANLQASGVVGRVLLTGNTVIDALLRMSERAPALSDLSIDWDAQRVILATVHRRENWGDRLKNIADGMLRVLDSHPDTVLLLPLHRNPTVREPLQALLGEHPRVVLTEPLDYDRLVAAMKGCTLLLTDSGGLQEEAPALGKPVLVLRETTERPEAVEAGTAQLVGTDPTAIHREASLLLDDSEAYNAMAKAVNPFGDGHASERILGAALELLAS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011620065.1|1905386_1907126_-	fibronectin/fibrinogen-binding protein	A0A0P0YM59	Yellowstone_lake_phycodnavirus	1.4e-12	40.0
WP_011620066.1|1907191_1907764_+	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	1.1e-22	35.7
WP_011620067.1|1907816_1907936_-	photosystem I reaction center subunit IX	NA	NA	NA	NA
WP_011620068.1|1907968_1908448_-	photosystem I reaction center subunit III	A0A0K0KWQ1	Prochlorococcus_phage	2.7e-17	48.9
WP_011620069.1|1908525_1909596_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-66	44.8
WP_041426660.1|1909636_1909822_+	high light inducible protein	NA	NA	NA	NA
WP_011620071.1|1909827_1910970_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_011620072.1|1911080_1912193_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	6.0e-20	26.8
WP_011620073.1|1912137_1912803_+	DUF1643 domain-containing protein	A0A0U2UUT5	Pseudomonas_phage	1.8e-16	35.1