CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008345	Shewanella frigidimarina NCIMB 400, complete sequence	3 crisprs	cas3,DEDDh,DinG,csa3,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008345_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008345_1

3174510-3174618

Orphan

Consensus_repeat	Method
GCTTTATTAAATCTGCGAGAAAGGTATCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008345_1

>merge|NC_008345|1|3174510-3174618|CRISPRCasFinder
GCTTTATTAAATCTGCGAGAAAGGTATCGTCTTTCAACCTATCCAACTGAGCTAATGTCACGTATTCAATCTTTTCAATGCTTTATTAAATCTGCTAGAAAGGTATCGT

>NC_008345|1|1|3174510-3174618|CRISPRCasFinder
GCTTTATTAAATCTGCGAGAAAGGTATCGT	CTTTCAACCTATCCAACTGAGCTAATGTCACGTATTCAATCTTTTCAAT
GCTTTATTAAATCTGCTAGAAAGGTATCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008345.1\|WP_011638087.1\|3157871_3159833_+\|OmcA/MtrC-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274617
NC_008345.1\|WP_041413633.1\|3188073_3189813_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223994
NC_008345.1\|WP_011638092.1\|3166054_3167224_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NC_008345.1\|WP_011638088.1\|3159930_3160920_+\|DmsE-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274618
NC_008345.1\|WP_011638105.1\|3189888_3190404_+\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
NC_008345.1\|WP_011638089.1\|3160932_3163020_+\|MtrB/PioB-family-decaheme-associated-outer-membrane-protein	unknown	unknown	gnl\|CDD\|371763
NC_008345.1\|WP_081430166.1\|3181359_3183069_-\|PTS-glucose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182955
NC_008345.1\|WP_041413104.1\|3163388_3164546_+\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226355
NC_008345.1\|WP_011638103.1\|3184411_3186556_-\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_008345.1\|WP_011638097.1\|3175400_3177233_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_008345.1\|WP_011638095.1\|3171383_3173051_-\|hypothetical-protein	unknown	unknown	unknown
NC_008345.1\|WP_011638100.1\|3179102_3180938_-\|hypothetical-protein	unknown	unknown	unknown
NC_008345.1\|WP_081430167.1\|3183148_3184177_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_008345.1\|WP_011638093.1\|3167454_3169095_+\|putative-pyridoxal-dependent-aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|274791
NC_008345.1\|WP_011635888.1\|3169815_3170859_-\|IS110-like-element-ISShfr3-family-transposase	unknown	unknown	gnl\|CDD\|226077
NC_008345.1\|WP_011638096.1\|3174807_3175356_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NC_008345.1\|WP_011638091.1\|3164675_3166034_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NC_008345.1\|WP_011638094.1\|3171107_3171365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338776
NC_008345.1\|WP_011638098.1\|3177277_3177922_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NC_008345.1\|WP_011638099.1\|3178172_3178592_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651

Protein	Function_ID	Function_description	E-value
NC_008345.1\|WP_011638087.1\|3157871_3159833_+\|OmcA/MtrC-family-decaheme-c-type-cytochrome	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	1.57649e-90
NC_008345.1\|WP_041413633.1\|3188073_3189813_+\|AAA-family-ATPase	gnl\|CDD\|223994	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].	2.79762e-106
NC_008345.1\|WP_011638092.1\|3166054_3167224_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NC_008345.1\|WP_011638088.1\|3159930_3160920_+\|DmsE-family-decaheme-c-type-cytochrome	gnl\|CDD\|274618	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family. Members of this family are small, decaheme c-type cytochromes, related DmsE of Shewanella oneidensis MR-1, which has been shown to be part of an anaerobic dimethyl sulfoxide reductase.	5.70822e-126
NC_008345.1\|WP_011638105.1\|3189888_3190404_+\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	2.01084e-126
NC_008345.1\|WP_011638089.1\|3160932_3163020_+\|MtrB/PioB-family-decaheme-associated-outer-membrane-protein	gnl\|CDD\|371763	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB. MtrB-PioB is a family of bacterial putative outer membrane porins. This family, is secreted as part of the pio (phototrophic iron oxidation) operon that has been found to couple the oxidation of ferrous iron [Fe(II)] to reductive CO2 fixation using light energy. PioABC is found in Rhodopseudomonas palustris and MtrB-PioB is likely to be a beta-barrel porin. Similar to other outer membrane porins, PioB and MtrB are predicted to have long loops protruding into the extracellular space and short turns on the periplasmic side.	0
NC_008345.1\|WP_081430166.1\|3181359_3183069_-\|PTS-glucose-transporter-subunit-IIBC	gnl\|CDD\|182955	PRK11089, PRK11089, PTS system glucose-specific transporter subunits IIBC; Provisional.	0
NC_008345.1\|WP_041413104.1\|3163388_3164546_+\|CdaR-family-transcriptional-regulator	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	5.29924e-134
NC_008345.1\|WP_011638103.1\|3184411_3186556_-\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	4.08305e-109
NC_008345.1\|WP_011638097.1\|3175400_3177233_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_008345.1\|WP_081430167.1\|3183148_3184177_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	2.26432e-152
NC_008345.1\|WP_011638093.1\|3167454_3169095_+\|putative-pyridoxal-dependent-aspartate-1-decarboxylase	gnl\|CDD\|274791	TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A].	0
NC_008345.1\|WP_011635888.1\|3169815_3170859_-\|IS110-like-element-ISShfr3-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.57065e-38
NC_008345.1\|WP_011638096.1\|3174807_3175356_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	2.94703e-74
NC_008345.1\|WP_011638091.1\|3164675_3166034_+\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	4.83877e-105
NC_008345.1\|WP_011638094.1\|3171107_3171365_+\|hypothetical-protein	gnl\|CDD\|338776	pfam13495, Phage_int_SAM_4, Phage integrase, N-terminal SAM-like domain.	2.31365e-09
NC_008345.1\|WP_011638098.1\|3177277_3177922_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	4.63826e-158
NC_008345.1\|WP_011638099.1\|3178172_3178592_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.8916e-57

>NC_008345.1|WP_011638095.1|3171383_3173051_-|hypothetical-protein
MSKSQIKEALRRQSLEWYLTKSDSNYFTAPELFSPLYRVLYEHLLRGEEPPYYVTDFDKETTANLHQCRTSFDRYLVALFPSRYEASNSLELRSTELKEGELLEYLHSTYAKATSDRDSYNTDREIKYILDLLPITEDKVEWLKKKAKSQLYKLLVLSYKLSIINPRWRELIRYVEPERMHKASMDNVVDFNMLDDTKARENSALVKMFYFEIDQGKGDGDATQSRRIMILPFAFDCLFKAVQLTAYMQFYLGQNLVQIEEKLKSFSTRFDSILHGLSKQTLSYKNHNQELADLIQTTVLKNIYTNGLLARKCFEHNIDYCEVKIANNGNWIINTQDTLNIPRLIESELNLPSGTFDPRWVALAETLAKIVLKSDRIAPEEYHVIRNLCCILVTHLKEQGKVNLKSNITGKKHNDFSVMKELVRVHDWLQKNDPNVENKHHLSLMRPTTVHFLTYAVGQLMWSMDCGQHSEQSNLSDSDYVQFSTTVFDTVFELIIKLRSVDHVTCLSAVEYMCKEIYGVHFDLDQRFLASLGDKLVLQKHIERAQIVWDPLKNL
>NC_008345.1|WP_011638094.1|3171107_3171365_+|hypothetical-protein
MSISFLENGFVQHPNKVSSARHLFAAYSSTVRRITKFFDRFPDTLTIDDLMHYFSQLIGNVSWITIKLDRCGLQFFYKHSLHLNL
>NC_008345.1|WP_011635888.1|3169815_3170859_-|IS110-like-element-ISShfr3-family-transposase
MKVTTISIDLAKNVFQVLGMDCHAKQVFNKRLNRTQLTEFMLQQPNCDVVFEACYSSHYWGRKFLAMGHNVKLIPAQHVTPFVRGSKNDNNDTMAIYEASFRPNIRFVPVKTEEQQEILMLHRIRERLVKEKTACTNQIRGVLVDFGICFAQGYKAFEVAIWDIINDASQRPIIKLMANDFWGEYQSVNTRLDRINTLIKKLIERDPNGKILLSIPGVGPIIASAFVASIGRGQAFNTAKELGVWLGLTPKQFASGHRSVNGSITKRGNGYLRKQLIHGARAVVSHASKKQDDLNLWIMQLRSRKSICSTVVATAHRLARLIWILLQKQVPYVPQYAANQGVNHGTC
>NC_008345.1|WP_011638093.1|3167454_3169095_+|putative-pyridoxal-dependent-aspartate-1-decarboxylase
MTSKITRQANASEDSLLRIFTAPEDSTSTLSIIEQKLSQDLAGFLGNSIAALEKPLSEIETDFSAYQIPTEPKFVSDYADEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQVLGMMHNLVYQQSDDFYHQWMHSANHSLGAFCSGGTVANITALWIARNRLLQPRGDFKGVTREGMTKALRFYGYDDLAILVSDRGHYSLGKTADLLGIGRDNIISIPTDEHHKVDVAAMRDAAEKLAQQNIKVMAIVGIAGTTETGNVDPLTELAALASELNCHFHVDAAWGGASLLSKKYSHLLKGIELADSVTIDAHKQMYVPMGAGMVLFKDPELAKAIVHHAEYILRVGSKDLGSQTLEGSRPGMAMLVHACLQIIGRDGYEILINNSLEKARYFGSIIDQHADFELVTAPELCLLTYRYVPKSVQAILTTALANQDSALVASINELLDGLTQFIQKHQREQGKSFVSRTRIKPAKYLRQPTTVFRVVLANPLTSHQILHDVLTEQVEIAALDSEYLPQLLAL
>NC_008345.1|WP_011638092.1|3166054_3167224_+|glycerate-kinase
MKIVIAPDSFKESLSALEVANAIEDGFKQVFPNAQYCKVPMADGGEGTVQAMVDATQGQIINLTVTGPLGLPVNAFYGVLGQLDEDGNQTAIIEMAAASGLHLVPSTQRNPLLTTSFGTGELIADALDRGIRHIILGLGGSATNDAGAGMMQALGVKLSDITNTPLPLGGAALATLHYINMQLCHPAIKECVIEVACDVDNPLCGPRGASAIFGPQKGATTEMVEQLDLALGHFAHVINQHLNQPIDGHCQLHPGAGAAGGMGFGVMTMLNATLKPGVDIVTKSVKLAQHCLNADLIITGEGRMDGQTVFGKTPMGVLNVAKQQNIPVIGISGCLGENADVILAEGMHAIFPIIPALQPLEQVLSEAQVNLTNTARNIAAIMSLSFASK
>NC_008345.1|WP_011638091.1|3164675_3166034_+|GntP-family-permease
MGLILILLGVIAFIVIATSKFKLHPFLTLILASFLTAFAYGLPSNEIAKTITGGFGGILGYIGLVIVLGTIIGTILEKSGAAITMADVVIKLFGQRFPTLTMSMIGYLVSIPVFCDSGFVILNSLKQSMANRMKVSQVAMSVALATGLYATHTFVPPTPGPIAAAGNLGLESQLGLVIAVGVFVAAIAAFAGMLWANRFANEQPDGEGADELNLQQEDFDDLKKTYGELPSPTKAFAPIFVPIILICLGSVANFPSKPLGEQGLFDLLVFLGQPVNALMIGLFLSLSLLKSNQKIKEFSDRISQGLVVSAPILLITGAGGAFGAVLKATEIGAFLGSSLSALGVGIFMPFIVAAALKSAQGSSTVALVATSALVAPLLGDIGLASEMGRVLTVMAIGAGAMTVSHANDSFFWVVTQFSRMSVKQAYRAQTMATLVQGVTAMITVYLLSLFLL
>NC_008345.1|WP_041413104.1|3163388_3164546_+|CdaR-family-transcriptional-regulator
MFQIDTLIAAKIVDRTMKIIGHNINVMNAQAVILGSGDIDRIGTVHEGALLAISQNRNVEISQAIASNLHGVKPGLNLPLHYHGQVVGVIGITGEPDTLSHYGELLKMTAEMIVEQANLQEQLQWQNRQTEEFISQLIHANEQDLPSLQQWALQLGIDLSVPRVAAIIELDSNNPLYQQDNQALKQVLYLLQNPVRDNLIAMTSLTQLVILKPAFLDGKQFDPELENQRINKLLKRLPANMQLSLHISLGHYFGGELGISYSYRTAKETLDIGKKLHPTKTKYLYQDYSLQVLLSGLRHHWRGNALAGPYLKLIEVDNNQQLQKTLAAYLDHMGDIQACANSLFIHRNTLRYRLDKIQTITNIDLRSFNGLLSLYLGQLIHQPST
>NC_008345.1|WP_011638089.1|3160932_3163020_+|MtrB/PioB-family-decaheme-associated-outer-membrane-protein
MNTKLNLITLALLTSTSFSLMADGYGLANAKTDNIKYDAWNCKACAVETGTTGNVGVGIGYNSEDDINSANAFNSSNQTAGKIDADIKYRGNNGYQAKVVANNIGMNNGRMEIDVGKLGLYRLNLGYRSIATYQSNNALSPYQNIGSDNLTLADNWVTAGSSSDMPMLYSSLTPFELSLKRERAGLGFEYQTESLFTTYVNFQREEKTGTKVASGSFFNQSMMLAEPVDYTTDILNAGIKLRGDNWFTSINYNGSVFSNNNQQLGFDSAFNPTFGAQSRGYMALDPDNEAHTISLMGQYNDSITSLSGRLLLGQMTQDQQLTSIGYGYSLPADSIDAKVDITGMTLKAVTKLNRAWRLTGSYDYNDRENNTQIEQWTQISINDVTGKVRYNTPYDLTTHNAKLSTDYRINHGLKLDAGYDFKRDERSNQGRETTDDNNVWARLRVNSFDMWDMWLKGSLSKRDGSEYKASESSSAEQNPLLRRYYLADRDRTQIEARFNHSPLDNLNVDFGVRYALDDYTNTQIGLTESKDTNYDINLSYMINDDMNVNTFYNHQIIKSAQSGSANLSIATWQADIEDTVDVVGAGLSYNNLMDSRLRLGLDYTYSDSDSNTQVRQGISGDYGDYFAKVHNINVYAQYQATEKMALRIDYKMEKYLDNDDANDIEPDTIWNVMSFGNLQHDYTAHMIMLNVNYSL
>NC_008345.1|WP_011638088.1|3159930_3160920_+|DmsE-family-decaheme-c-type-cytochrome
MKTTHSINTLFLALLCLTASTLFMSSHVQAAKWDASMTPAEVEATLDKKFAEGKYSPKGADTCLMCHKKSEKVMDLFKGAHGAIDSSKSPMAGLQCEACHGPLGSHNRGGKEPMITFGPTSTLAADKQNSVCMSCHLDDKRVAWDSSHHANADVACASCHSIHAEHDPVLSKQTEVEVCTTCHTRQKADMNKRTSHPMKWNQMTCSDCHNPHGSLSDSDLVQPTVNETCYSCHAEKRGPKLWEHAPVTENCVNCHNPHGSVNDAMLKTRAPQLCQQCHASDNHTSNAYLGNTDMGSTVNGNAFTGGRSCLNCHSQVHGSNHPSGKLLQR
>NC_008345.1|WP_011638087.1|3157871_3159833_+|OmcA/MtrC-family-decaheme-c-type-cytochrome
MMNKKYTKMALLLAMSASMTLVGCGGGDDGEAGNPGNPGGEPAEAIKTLNLDITKVTYQDSKPTIEVFATNEKDLPVAGLKDFEIKKVVQLIPAGASGAGNSAQWQFIGSEKAFTDHGNGNYSFTVNVEGFNPELTQRYNVIASASTLQDGVTGVPRTEITEDFDGEGFEAKYTKNIVNTATCNTCHAEGESIYHSYTDLETCTSCHTNELAIEKGKVQDEFSHLIHNVHNNAKMYGRNLDKSAETAHAIVQDNCTTCHVNSEQLSESNNWSRIPTMEACSSCHTDIDFKTGQGHPQQVDNSNCIACHNASWTEELHTTSYTQKKTFIDLYGMTATLTANKSSAEDKSATLSVTILDANGTAIDATSLISKIQRVETITNVGPNFPIMGYNPSPGSGLAKISKDFIKAGLLQADVIIESGNLVYNIASLPFGAGDTDTAFSFIGLEMCNDGIQAIDCVDGVATTSMKAEFTVGTFSGNAPSYRHTDSVNFGSCDNCHGDTFELHKGHHAGFVMSEQLARELNGEVTIGLDGCVACHTPDGTYASGANQGAIEMKLHSVHGEQGIIKDCTQCHSDFNLDAFKVKGALATSQGLYTTPITATCASCHGFDTISQHAQSQGAVVNGSYQEANDAAQLETCFFCHAPTIENHTQVKL
>NC_008345.1|WP_011638096.1|3174807_3175356_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNLPIALTLFRIALLPVFIAVFYLPYPWAPFVSAFIFWLAALTDWLDGYAARKLGQLTRFGAFLDPVADKVMVSTALVLLVQQNDNVYLTLAALFMIGREIVISALREWMAEIGKRGVVAVSWIGKYKTATQMIAIIGLIWKPTPWLTDVAYGLFYIAAALTFWSMMSYISAAWKDLTAE
>NC_008345.1|WP_011638097.1|3175400_3177233_-|excinuclease-ABC-subunit-UvrC
MPSGFNAKSFLKNVTSAPGVYRMYDKHQQVIYVGKAKDLKKRLSSYFRVNIANVKTQALVSHIDHIDVTVTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGPKREKGHYFGPYPNGGAVRESLHLIQKLFPIRQCDDLYYKSRSRPCLQYQLDRCSAPCVGIVSDDEYSEQVKLAGLFLRGKDKQVISQLVAKMETAAIDMEYERAAQYRDQITALRRVAEQQEVSNHKGDMDVIGVDYASGIACFHLLFIRDGKIFGSRSYYPSVPAETEIEEVLSSFLGQFYLNADIQRTIPKEVILSHHFDGITELQASIEHALDKKFELKTQVRGDRANFLRLAMTNASNAVATKLSHKNTVEQRFQLLEEALELNEPIKRMECFDISHTMGESTVASCVVFNREGPHKADYRRYNITGITGGDDYAAMEQAISRRFDKIDNNGKVPDLVFIDGGIGQLRVAQTIVDEKCVNIDHPPLLICVTKGEGRKAGLETFTVGGSEQTFEVASDSPAFHLMLHIRDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQHLGGIQEVKGASVAELTKVPGISLEMAQTIHDALRGG
>NC_008345.1|WP_011638098.1|3177277_3177922_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MISVYLVDDHELVRTGIRRILEDERGIKVIGEAPDGETAVQWSRQNEADVILMDMNMPGMGGLEATRKILRYQPDAKIIVLTVQTEDPFPTKVMQAGASGYLTKGSTSPEVLRAITQVARGQRYLSPEIAQQMALSQFNHSDENPFSSLSERELQIMMMITNGEKVNDISEKLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKMLDTGSF
>NC_008345.1|WP_011638099.1|3178172_3178592_-|YjbQ-family-protein
MWLQREMTLNPKQRGFHLITDEVIARLPELRGINVGLLHVFIQHTSASLAINENADPTVRGDLERHFNVLAPEGAPYFQHTYEGADDMPAHIKSTLIGSSQSIPITNGRLNLGIWQGLYLCEHRDHTSARTIIITLQGE
>NC_008345.1|WP_011638100.1|3179102_3180938_-|hypothetical-protein
MKLHRIVTLTTLLGLTACGGGNDSSSDQAPLTPPPPPPENIIPVANIASLSSVISLTEVQLNGSASVDSDGQIQSYQWLQIDNGAPTVALSDATQSVTGFIAPEVQQDTEFSFQLTVTDNEGATNSVETRLTVLPIPLQQGHQGRVIDGYLMGATVWLDINNNGVFDEDEPNDVTDAGGEYSLKYNAEQQVCATLVPVRVDVPVGAIDETEGVVTSAYQLIYPPLYGQFNPEQAAYITPLTSAVWDMLSSSPTVNSTNAMDRNAEVLQASCQQLIDNPQSQLNYASLINEAIDDFTRKSNISIDDLFSDFIENGNQALQQTARRYVTGLSLSLKKKAELLTNDAYKDASYIRVIHYLDKAPAAEQLTENVWYRDIVVFYPDDSQFFSESARMISDDNGDVTDAVLYVYYRRHNNAFSWGDNGRYIASYDERNTANGQLETCFNNESIMVTHDVELVPVQFTLSNTYSTDTGECQFTADIFTQAYERVYYVDYSENNINYLMQFSQFKTNGAFATLNDWVNLQDRSAEYSTTELVTLLTDYGYTFTDDTGLQDADFSWYKRKTDDSQEHRVTTEKNYDASTGMISWTQLTEQSNNTNIKQCSKDGITWGACT
>NC_008345.1|WP_081430166.1|3181359_3183069_-|PTS-glucose-transporter-subunit-IIBC
MMSGAFSVLQKVGKSVMLPVSVLPVAGILLGVGSAGFSVLPDIVNVLMVQAGEAIFSNMGLLFAIGIALGFAKNDGVAAMAALVGYAIMVKTIGVLEPGTDVGVFGGMIAGAIAAATFNRFFKIQLPSYLGFFSGKRSVPIITGFGAIFAGVILSFIWPPIGNAIAVFSHWAAYQNPTLAFGIYGVVERSLIPAGLHHVWNVPFFFEAGNCVDSLGKPATGVLTCYLQADDASRAAGNGFGQLAGGYLFKMFGLPAAAMAIWHTARPENRVMVGSIMISAALTAFLTGITEPIEFAFLFAAPLLYVVHALMAGFAYVLVNMLGVVHGTSFSHGLIDFLVLSGNSQKIWLLVVLGLIYAALYYVVFRFLILKFDLKTPGRMDVELEIVSSEGTERARNFIEAFGGPENLVNVDSCITRLRMDVHDTSKVDQARLKQLGASGVLISGNAVQAIVGTIAEVSRTEIDEMLASGGYLSATPTPVIATATVNISAKDREQAQAILPLLGDVSSCRAIADNRLRLEVKDASLLDSTALQAHGIEAMLVLNPNLVHLIFSMNTAGLASVLNETFAD
>NC_008345.1|WP_081430167.1|3183148_3184177_-|phosphoenolpyruvate--protein-phosphotransferase
MAQLDVIKNAAEQQKALAFAHKDETAVTLDGVRFEIAGNIAKVSDAQKLVEMGGEAVGLLRSEFLYQDQSVAPSEDDQEQVYRAVLQTLGQRPLVVRTLDVGGDKPLAYLPLPKEDNPFLGERGIRVGLDKPAVLRQQVRALLKAADAGNLRIMFPMVASLFELKLAKQVVKEEAEKLAIDISGIQIGIMIEVPSAAVMADVLAEHVDFFSIGTNDLTQYTLAIDRGHPKLAAIADGLHPAVLRLIDMTVKAAHAKGKWAGICGGLAGEKDAVPILVGLGIDELSVSVPSIPEVKHQVRHLNQQACQLIAAKAMSCADAKDVRALMRDPNTLLAVKGDIEKR
>NC_008345.1|WP_011638103.1|3184411_3186556_-|GGDEF-and-EAL-domain-containing-protein
MHKNTISQEVNELVLDATNVGVWDWRVENDGLVCNERWAEIIGYTLSELMPVDYQTWLDVLHPDDLPKAIKNYDYHCQGQSELCELEVRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQEELLATTTELLRESQEIGKLGGWQLNLHNGDLIWTDETYRIYETTPQEYIPTVEMGVSYLLPDSKKLFQEALDAAIQLGEEYDLELETYTTKGQKIDVRTTCHVTYVDGVAEKLSGIFQDITDEKNNQRKLEKSNQVLKEVNEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSKQIAIAFLDLDGFKEVNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQRILSSITEIFIIENKRLSITVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIHEFDFENDVAIKLQYRELEYIINGFNNNEFLLFYQPKINMESNEIIGLEALIRWQHPTEGLLSPFRFLPYIEEEPLAIELGKWVIDQAIKQHNEWRRLGIVIPISVNVSPLQLQHEDFIKQLNEILFLNTSFQAGQLEFEILESSIIKDTQHIAEVISQCKQLGIRFSLDDFGTGFSSLSYLRKLKTDVIKIDQSFVIDMLDDMDDQAIVKSVIELSKTFGRSVIAEGVETQEHGRQLLKMGCQLAQGFGIARPMPASSIPEWINLWNASPPWICK
>NC_008345.1|WP_041413633.1|3188073_3189813_+|AAA-family-ATPase
MNSTLLPSAKLAPQYHLPDASTSVSFPSHILLGQERVVETFKLMSKTNSQHLFLADFLGVDRSLFIDALVTQANTPSSHYLVATKKQQEDTDIQFKWQQTLPPEHVGIIAKQESLSCYLQGTIRRADLLGRMLKTDKSSVYKPGALAKNHFVFICLASLWQRESLWDLLMQIIHDGFYRINNELTPIPLNCKIVLVGSGLSYSQLRVEDRNFNRHFPLLAEMSNEVDLTQHPESSYVQWLNVLAQAESVELEPSSLLPLFWYSSRLVEHQQRLSLSMLEFRQLLGQAKVYSGQATLNAAAIAKALEKLKFRHNSSEIYSAQSFDDNFINLPTKGAMVGQINALTVIDTGDYTYGEPARITSSVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEHPIIQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCQRRGLTGEQGVIMPKANVLQLNLEPAVIEAIDKGLFHIHAIEHMDQAVELLMQMPAGVANEDNDFAPDTLYGLVQQRLDKLAGQDDDDVELNFFAKLLARLHII
>NC_008345.1|WP_011638105.1|3189888_3190404_+|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MEKANSFTKEQLVACGHGNLLGPNRPRLPVDNMLMIDRIITINEDGGAFGKGEIIAELDITPDLWFFDCHFISDPVMPGCLGLDAMWQLVGFFLGWEGAEGKGRALGVGEVKFTGQVLPDAKKVTYKLNIKRKIHRKLVMGIADATMEVDGRQIYSATDLKVGIFSDTSTF

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Crispr_ID: NC_008345_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008345_2

3390806-3390904

Orphan

Consensus_repeat	Method
CGGACTACGTCCTGCTAAGGACAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008345_2

>merge|NC_008345|2|3390806-3390904|CRISPRCasFinder
CGGACTACGTCCTGCTAAGGACAGCAGAGCTGTAAAGCTTAGACGCTAGGTTTTAGTGCGCTACGCTTCTAGGACGGACTACGTCCTGCTAGGGACAGC

>NC_008345|2|2|3390806-3390904|CRISPRCasFinder
CGGACTACGTCCTGCTAAGGACAGC	AGAGCTGTAAAGCTTAGACGCTAGGTTTTAGTGCGCTACGCTTCTAGGA
CGGACTACGTCCTGCTAGGGACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008345.1\|WP_011638265.1\|3394153_3396622_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_008345.1\|WP_011638271.1\|3404158_3405046_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NC_008345.1\|WP_011638270.1\|3402427_3403780_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|236787
NC_008345.1\|WP_011638267.1\|3399035_3399425_+\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133411
NC_008345.1\|WP_011638256.1\|3380089_3382219_+\|hypothetical-protein	unknown	unknown	unknown
NC_008345.1\|WP_011638253.1\|3374727_3375375_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_008345.1\|WP_011638260.1\|3384822_3385770_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_008345.1\|WP_041413136.1\|3382230_3382542_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|225166
NC_008345.1\|WP_011638258.1\|3382584_3382926_-\|hypothetical-protein	unknown	unknown	unknown
NC_008345.1\|WP_011638255.1\|3378966_3379746_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_008345.1\|WP_011638263.1\|3392372_3393017_-\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239268
NC_008345.1\|WP_011638269.1\|3401745_3402129_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_008345.1\|WP_011638264.1\|3393144_3393711_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_008345.1\|WP_011638259.1\|3383711_3384680_+\|DUF3187-family-protein	unknown	unknown	gnl\|CDD\|288272
NC_008345.1\|WP_011638262.1\|3391218_3392361_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|308585
NC_008345.1\|WP_041413137.1\|3385773_3390663_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
NC_008345.1\|WP_041413647.1\|3373868_3374693_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NC_008345.1\|WP_011638254.1\|3377798_3378920_-\|response-regulator	unknown	unknown	gnl\|CDD\|381107
NC_008345.1\|WP_011638266.1\|3396883_3398959_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_008345.1\|WP_011638268.1\|3400050_3401616_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157

Protein	Function_ID	Function_description	E-value
NC_008345.1\|WP_011638265.1\|3394153_3396622_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.02483e-70
NC_008345.1\|WP_011638271.1\|3404158_3405046_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	1.0412e-166
NC_008345.1\|WP_011638270.1\|3402427_3403780_-\|phosphoglucosamine-mutase	gnl\|CDD\|236787	PRK10887, glmM, phosphoglucosamine mutase; Provisional.	0
NC_008345.1\|WP_011638267.1\|3399035_3399425_+\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	2.27784e-55
NC_008345.1\|WP_011638253.1\|3374727_3375375_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	4.17966e-36
NC_008345.1\|WP_011638260.1\|3384822_3385770_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.88721e-87
NC_008345.1\|WP_041413136.1\|3382230_3382542_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	5.2549e-24
NC_008345.1\|WP_011638255.1\|3378966_3379746_-\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	5.87358e-92
NC_008345.1\|WP_011638259.1\|3383711_3384680_+\|DUF3187-family-protein	gnl\|CDD\|288272	pfam11383, DUF3187, Protein of unknown function (DUF3187). This family of proteins with unknown function appear to be restricted to Proteobacteria. These proteins are likely to be outer membrane proteins.	1.32727e-141
NC_008345.1\|WP_011638269.1\|3401745_3402129_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	9.29018e-48
NC_008345.1\|WP_011638262.1\|3391218_3392361_-\|hypothetical-protein	gnl\|CDD\|308585	pfam03022, MRJP, Major royal jelly protein. Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts.	1.54315e-17
NC_008345.1\|WP_011638263.1\|3392372_3393017_-\|AhpC/TSA-family-protein	gnl\|CDD\|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	4.08224e-45
NC_008345.1\|WP_011638264.1\|3393144_3393711_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.1819e-11
NC_008345.1\|WP_041413137.1\|3385773_3390663_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.28613e-114
NC_008345.1\|WP_041413647.1\|3373868_3374693_-\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	8.1252e-81
NC_008345.1\|WP_011638254.1\|3377798_3378920_-\|response-regulator	gnl\|CDD\|381107	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains. Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.51528e-45
NC_008345.1\|WP_011638266.1\|3396883_3398959_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.90722e-44
NC_008345.1\|WP_011638268.1\|3400050_3401616_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	2.40925e-78

>NC_008345.1|WP_041413137.1|3385773_3390663_-|PAS-domain-S-box-protein
MTRLSSYKNALKLGIGVFSCGLVISFITALSVNNQNNTIITQSLKTVTEQVANNIIDRIVLYQYGLRGARGVIYTVGEDNISRDFFKKYSLTRDFESEFPGARGFGYIRRVPANDEASFVAKAKLDDWPDFSVRQLTPHDDERYVIDYIEPVERNLAAVGLDIASEQNRKNAAQQAYLTGETRLTGPITLVQATGHPLQAFLILMPIYRTGLTPATPALREQQAFGWSYAPLVANEVFEQINLSRKTTKLLVNDVTDAQNNVMFYETHVDEVNPLTSFVVTLDREIFGRKWQVSLVAYPEFVSGLHLSSPKIVFSYGAIVSLLLGGLIGFYGYALGRKRIIMEDNERRANILEHSLDAIISFDCDGVITSWNDGAVMMFGYEKHEVIGLKKTTFIVPNDGYDAENEKFNQVLNGKSLLNFVSQHKRKDNELLSTSMTSLAIYNEFGKIIGVSQTIRDITVQLNAEKQILNINASLERKVTERTQALQQALSENKTLLDNINQQLLYSETDKNGVILVVNDNFCQTSGFTREQMIGKKHSILKSNEHDRAFWKQMWQTIHAGETWHEEICNRDKQGNIKWLDTVITPVMDENGNLVRCIALRIDITERKNSQLEKNKLASLLTNVLAAATEIAIISTDNDGIINIFNRGAQLLLGYQAEEIVGKQSPAILHLPSEIRQRSKELTEEFGEDISAFDVFVYKPRTQGPETRTWTYIRKDLSQCQVSLSVSAMRDQSGEIVGYLGVAVNIDQMLKQQEELVSASNQLSKAAEVAELGIWNLDLDTDNLQWNDRMFAMYDYPLALTEKGLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYEPTFRIITSSNQIRYIHAGAQISYDKTGKPVRVVGINRDITEQRELEQTLRLAKQAADAASAAKSAFLANMSHEIRTPMNAVLGMLQLIQHSDMSRQQADYVTKAENAAKSLLGLLNDILDFSKIDAGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDELRLRQVLLNLAGNAIKFTSEGHVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIFQGFVQAESSTSRRFGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFELTFNIVEVKNNDLDIDLLGKNILIVDDSKMSRKILSKTLMAHGAYVNEAHNSKQAINLIEQSLNASSHYDVIIMDWRMPDMNGLETANHIQAMFPAGKAPAIIMLTAYGAEVMEQTKQYRQQPFVSMLTKPVTANLMLEAVYRAINGLVQPVQSRKITHLVLKGVRVLVVEDNQLNRQVIDELLRLQGAVVTLAKDGIEGVDWVTKSNNQFDIVIMDMQMPVMDGLEATHLIRADGRFNDLPILAMTANASLADKTLCLEAGMDDHIGKPIDMTLLLPCMLSLLGQDNSAYYHSTVNNSPIALPEVIDDGDDEAIIENSDSILRRFGGELAFFIDVKHHFASEMAEQLSLLTQAFALQDNSAISSIAHTIKGTSSNIGAKRLAAFAAKLEQNIKNAVNVDSVACLSQMQGQINDSLHMLDTLFPDESAVLTTNTLDNNAILPIQSIEPDKINRLMELLVEQNLDAIEYLDRLLSDVVPDKQWLRLKNQVSQLEFLDAVDTLTSIIKE
>NC_008345.1|WP_011638260.1|3384822_3385770_-|diguanylate-cyclase
MFIDEYISGVAPIRGKILLVDDQVVNIKILHQLLQTDYDIYMARDGHQAIDMCKKVKPDIVLLDIEMPMLNGFDVCAHLKKDPDTEDVAVIFVSGHFDEDKEVKGFQLGAVDFIHKPINPVITKARIKNQMMAKSQTDLLRSIALLDGLTGLANRRKFDQVLPVTWLQCAREKQPLTIILLDIDFFKHFNDTYGHTEGDTCLRVVAQKIQDTVNRPYDLVARYGGEEFICVLPNTDLIGGTYVAQQIVDSIVSLKIAHINSPISKFVTVSAGVSTVVPMYDMPNKILVEAADKQLYLAKDRGRNRVLGCLVEENT
>NC_008345.1|WP_011638259.1|3383711_3384680_+|DUF3187-family-protein
MKTNLKLISVVSMSFILPAQAQVVSFDDYGPLQVYAQSPMQSLNLSPLLRSGFSLPQGQKEWYITANAASVWSESDELLADYYQNAISSGLKWQITENLLFDANYTWQFSGDNHLDSLTMWFHDAFGFDQNGRNQQAKHQSQMRSEKYDIDVENFNGETLNNAFTAYLGYQLLQNEHHGISVGGTLYYKSVDSGPFADESFQQSVQINYGYHNGNHHVNSTLGISFLHNKAPLSQNSFESHYLTLGLGYEYRTGRHGWLAEYHRYDGMVSWDENFSEASNEALLGYRYYFNSSAIEFTMVENFLNMDNSADIAYVLGYRHKF
>NC_008345.1|WP_011638258.1|3382584_3382926_-|hypothetical-protein
MDLIWLLGLLAIYIPIQMCIDAYIVYRTDVQQKGCDYLLAFIPLLTFAYPEHYLYSFISLVLIVLYGISLRYYAAFNDWLDFDQDRLAGLCLGGLGVGGIMITASLIYQFLQH
>NC_008345.1|WP_041413136.1|3382230_3382542_+|flagellar-biosynthesis-protein-FlhB
MKDDSKKIQQAVALSFDGKSAPKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFLQLLELGDEVPKELYLLIAELIAFVYMLDGKFPEQWDNLHQKIVAQA
>NC_008345.1|WP_011638256.1|3380089_3382219_+|hypothetical-protein
MAVPTTLPQKPVNTVTIKPVDVSPQAVTERKQTQTDSTSLPAKTSNEKSVVSNSSTTKSDLAAVLLPVKVGQPPASAQLDISIENQQYQLNKTAELQKLLQQTAQVVIASDQAKLVARAVSSVNLPVAQAEVINSQSTSPAIPTATPPAQTVATQLVLLAQPIQLALPQGLEELAKQNGVSTQQLASLAARVQGYPLPTAIIDQGKLTFSGGTSIQLSPNTALNSGQYLAKVVVQHQQLQLTLTPVIAEISVNLTKLPAPPQAAQTLESANIIITKNEPAQILSQFLKKLESTPLSIIDNAVKGSDVQQKTPNELTPSSAKVGQDSTAVKTLTPVTQQQRSSGLSPESNLAKTGSNMEQQANLAKSAVNNTVEQTALPTKSVAEQNTPKANTTSTIDNSAKNNPPNNPASNNNASNKMNSDSDPAPIEVLNKALSKAGAMPIKQQLSQQIPHNLASELFKHLPQISPHPLSALSDPALLSSELYSLAALNLAHTQLGHSTSAQPSPLFSGSAITTLFQLLLGVKTKSTGSGISDKLQAHLAQLQQRTLSKLSANSGLLAALDKLGGADSLAQLANSIALYQHASTDPNQAMTWYFALPYSINQRDEQFEGKFEQENDSDKDKKAGWKLQLKFNLAQGSLLICAHKQAEVLDIQFKGNNQMLLTKVERFNQALSDKITQIGFTPGKLTTQLAQIPATLLPGDHYLVKTRA
>NC_008345.1|WP_011638255.1|3378966_3379746_-|VacJ-family-lipoprotein
MKYKWILLQVFVAVSMPAYAETEAPQVTTSSRPAVEIKYNDPRDPFEEVNRTMWDFNYLFLDRYVIRPVAHGYKDYVPNPVRTGVNNFVYNLEEPSSLVNNTLQGKWGWAANAGGRFTVNTTIGLLGLVDVADMMGMHRKQDDFNEVLGYYGTPNGPYFMAPFYGPIVTREIASDWVDGLYFPLSELTIWQSVLKWGLKGLDARSKAIDQERLLDNALDPYAFVKDAYLQHMDYKVFDGDVPSSQADDELLDEYLDELE
>NC_008345.1|WP_011638254.1|3377798_3378920_-|response-regulator
MALTDVEILFVEDDPIFRHVVADFLQGQGARVQQACNGDEGIALFSDAIFDIVIADLSMPGLHGLSMLKQMQDINPAIPAIVISGNDVMSDVVEALRIGASDYLTKPIADLFIIEQAIIQAMMSAATPMNVSGQSHLQEMNELSYQELTDNLCLLEQNAQAAKSVQQQLFPASHIYYPKAEINYSLFKNNDVSAYFIDSTMVGEHHLVMYMAHFSPEDNSAAFGCVLLRSFINQKLKLFRNGLSNTLIEPNNMLSYLHQRMVKSGLHINTDIIYVCLDLSSYQLSIGQSGKGLRCYLRNGNELTPLALPESAPLGSSGWDKPSMQTRTLLRDEQICIGTHFYEHKQQLLENRFTGLVYQSDIKAGGFMQLACR
>NC_008345.1|WP_011638253.1|3374727_3375375_-|OmpA-family-protein
MTFVRAVTLILIGCFICTAHAWVDTDFDGVPDKKDACNDTPANSVVMANGCIDTELLIVDEDAEDDAEFDDAELGATVTNNSALIAEQCRQQRDVSVAVDCFGSILQPVYFDFDKSVVLLTQRPTLVRVQQYIEQHPQVAIRLEGHTDNIGSDAVNRSLSLKRAATIKDLLVNEYQFQPTSIEIVGMSNKNPVADNATIEGRQRNRRVEFIISAE
>NC_008345.1|WP_041413647.1|3373868_3374693_-|mechanosensitive-ion-channel
MEGLDALVEQAPEFLMTYGLKALAAIVIFLIGKYFSGVAKRITTKLLTNRKVDATVVSFVANLAWMLVFVFTIVATLGQVGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDFIEAAGVAGVVDEITIFSTRLRTGDNKMIIAPNSAIMNGTITNYSALEKRRIDLTIGVSYTADIAKTKKVLADILDNNQFVLKDPGYTIGLAELADCSINFVVRPWVKTPDYWTARFELLEQIKNALDAAEIEIPFPQMDLHVKEVPAK
>NC_008345.1|WP_011638262.1|3391218_3392361_-|hypothetical-protein
MMFKSLFESTTAMASRMNILPKIVLLSKTRVIASLVLLGSLFTSTVFAADYSVFRELDSQHPPGNVAVSSTGRVFMSNHHFYGVDSRIVELKKDGSIVDYPNTEFNQNLNPVLGVVIDEQGILWMLETASTDGVGRLIGWDTQQNRLYKMISLAAPVLPSNSFLNDLAVDRQHETVYITDPAGGSNAALIVVDLTSGTARRVLDGSVYTRPENVDTVINGNTLSIGGQPIRIGVDSLTIDPNNEWVYFGALSGEKLYRVHTQYLLDANLSANMLRSKVEFYANKPVSDGITIDNGGNIYVTDISNNAVGYIDTDRQYHILHQDSDKFSWSDGFSTTADGKLLVTVNKFHQSPAVNNQQDKSDGHYYIIEFDALTETTVGR
>NC_008345.1|WP_011638263.1|3392372_3393017_-|AhpC/TSA-family-protein
MSLSTQLTEKRDANAANLPPEVLAIMSDATLNLKLSGIIDSAPKAGDKLAAFSLTNPLGVTRHLSELLVNGPVVVTFYRGSWCPYCNLALRAYQQHLAEFKQLGATFVAITPELPDMSLSTAEKNELEFDVLSDVNAEYAKALGLVFSLPDSIRDLYKKFGVEVEKHNGADQFNFPLAATFVVAKDGTIVKAFVDADYTYRLDPEDIISSLKAL
>NC_008345.1|WP_011638264.1|3393144_3393711_+|TetR/AcrR-family-transcriptional-regulator
MAKKNFERADVLDKVITLFWQNGYAASSIQQITKATGLKPGSLYYEFDSKEGLFQAALARYATFSIEAIHQLMQQADDVKAGIRQILDNIVEQSKSCDYCGCFLIKTQLELASQGNELYKFASSQLTEIEHVYQHYLSQLYEAETAKAYAAQLMTVTFGIRIYGYQSESAATQINTINALLPWLKVEC
>NC_008345.1|WP_011638265.1|3394153_3396622_-|S9-family-peptidase
MKTFSLVLTSLAIAISGMAHGAEIDAKYIQRIGSVNQVSAAPLSKSAHADALRANLVAQLSQANHASKVTVFNQPLSWQAASTKVEGEGWLVYQVTMSTDRFTQGTLTVKGLENPQVYLNGQLVKSADKVELELTNGDYHLVVLADGQAQDSEFSLDWQGKSEVDNLDFTSQKTQRVSAEQLFDSKVISGLTLSPNGKYLLQSTIEYQASQGDTPIQVTELRKLSDNSVMYRWQDNRPSSAVWSSDSSQLVFVANKKIQLLNVADLSINVVATDMDNVSGLQWLGGTVLFSWEKPFKADEKATSKRFQALEDRWSYWRNNSQLYQVDVASGFIRQLTDNKVSSSLLDSNADKGKLLLTRSPVDYAQPAHGVTQLIELTLADLSETMMGEYRSFNSALYADDGMYITAGPRFMDGRGIQDPNLEVNDYDGQLYWRDAKGNVSALSKEFDPSIGSITKLENDDLIVTVTEGDRAPLYLFDKSKKHFNRIDTGVDMIDGFSVAIEQSTPTLVFAGTSATAPQKAYKMKVNSSRKQLLFDSQQLSYANTRLGKIEDFDFTNTHGHNIDGRVYLPADFDARKKYPALVYYYGGTSPVGRHFTGRWPFNLWAAQGYVVYVVQPNGATGYGQAFSGRHVNAWGKYSADDIIEGTKAFLNAYPSVDAKRVGNMGASYGGFMTMYLATKTDIFAASMSHAGISNLSSYWGHGWWGYGYSGVASRGSFPWNNPELYIEQSPLYHADKITTPLLLIHGNADTNVPVGESHYMYTALKLLGKEVELVEFNDQDHHINTRQARFDWWNTTMAWFDMKLKDEPQWWNSIYPETKEE
>NC_008345.1|WP_011638266.1|3396883_3398959_-|TonB-dependent-receptor
MLSYSAASLILSLGVIGVSEASVVDDSINTSGQSANHSENDSKSHSENPEHSEHDAPKADVDEHEHEEEMETIVIQATRSGRIADEQPIRVEVINREEIEEKAAMRPGNISMLVAETGGVRLQTTSPALGSANIRLQGLYGRYTQLLADGLPLYGNQAGSIGLLQVPPTDLSRVEIIKGSASSLYGGSALGGVINLVSRTPGDELSGEVLVNATTRDGQDVTTYFESPLSENVKGSVTAGAHYQDKQDIDKDGWIDLAGYERYTVRPRLFWEGQEGQTLYVTSGFMTEQRTGGTLGDNMVADGTSFEQSQDSDRLDGGLVFSMPLLESLTFNTRASAMVQDHVHVYGADIEEDQHESYLLENSIAGYTDNSDWVVGLAYQSEIFASDTFPEFDYSYKVPGAFAQLDYELTDQITTSYSARIDDHSEYGTQFSPRVSVLYRPSDLTIRGSYGEGYFAPTPFVEEIEAAGLSRLAPIDNLQEERAKTASLDVSYTFDDVETSLTLFGSNVDNVTGLEAFSANNDGTLDAVRLVNASGESQIRGSEVLLRYYLGDVKLTASYLYLDATEASPDGDGRRAIALTPRHSGGFVAMWEQHGNFRAGFEAYYTGTQNVNDNPYIDETNPYWHLGLMGEITVGRVSWFINLENLLDVKQTDEHPMLLPNRSPSGQWTTDIWSRNDGFIANAGVRVKFGH
>NC_008345.1|WP_011638267.1|3399035_3399425_+|Cd(II)/Pb(II)-responsive-transcriptional-regulator
MKISELASIAQVSVKTIRYYEQIGLLSPPIRTSNGYRHYQEKDIETLVFIRRCRELNIGLDDIKRLVDTQQDPKSSCALVDNIIAEQLARIQQTQRELALLEQSLAALASCCKSHQIKDCSILQTLKSA
>NC_008345.1|WP_011638268.1|3400050_3401616_+|MBL-fold-metallo-hydrolase
MQIIHHGAVNGVTGSCHQLDVNNYNNNSHNHGNGNNISSYLIDCGLFQGAETAGKSSADQLQITFDIQHIKALIITHCHIDHVGRIPYLLAAGFNQPIYATTATAALLPLVIEDALKVGVTRDPKLIQACINRLKKLLVPVDYGQWITLPINIPTAISSTESATEMDSASSIEKTTTEPATISSTENTEDISKETIVTPAIYHKAKLKFKPAGHILGSAYVEIDLSGPSGNHRVVFSGDLGATYAPLLASPKSPYRADTLVIESTYGDKNHQGRKERSKQLKNIIESAVKDNGVVLIPAFSIGRTQELLYEFEHIIHRNKHNPVWENIDIIVDSPMAANFTQKYRQFKTLWDNEAKGKLAQGRHPLYFNQLITIDSHQDHLSVINYLDSTHKPAIIIAASGMCTGGRITNYLARFLPIPTTDILFVGYQAQGTTGRDIQTYGPQGGYVYINELKIDIKAAIHTISGYSAHADQHNLINFVKRMHHKPSHIRIVHGDNEAKQALAKEYRKMLPEAEIVIGKE
>NC_008345.1|WP_011638269.1|3401745_3402129_+|four-helix-bundle-protein
MRFELLDVWKRASRLSCEIYKLADKVNNWGFKDQITRSGLSVPSNIAEGEERDTTKEKIRFLYYAKGSLGELVTQLYIGVEAGFLDKKASLILVNEAKELAKIIGTMIKNKQSKIENDRNLRTEPRV
>NC_008345.1|WP_011638270.1|3402427_3403780_-|phosphoglucosamine-mutase
MSRKYFGTDGVRGRVGTFPITPDFAMKLGWAAGKVLASTGTQEVLIGKDTRSSGYMLESAIEAGLSAAGVNVALIGPMPTPAVAYLASTFRADAGVVISASHNPFYDNGIKFFSNSGTKLNDQQELEIEALLDQALNHNAMECVSSELLGKVRRITDAAGRYIEFCKGVFAKDLTLAGLKIVVDSANGAAYHIAPNVYRELGAEVISINDKPNGTNINDHCGATHLDSLQTAVMVHEADLGIAMDGDADRVMFVDHNGHVVDGDQILYILAKSAKQQGTMTGGVVGTLMSNLGLEIALKEMDIPFKRAKVGDRYVVEQLKQTGWRIGGEGSGHILHLDHASTGDAVVASLLVLQAVLQSGQSLAEIVSCMKKLPQVLLNVRLTANNADEILASAAVKQAVIEAEAVLAENGRVLLRKSGTEPLIRVMVESTDPEMSQAQAEHIAKVVTSF
>NC_008345.1|WP_011638271.1|3404158_3405046_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKVVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYIVNECVAAGVKEIVLVTHASKNAIENHFDKSYELESTLEKRVKRQLLEEVQAICPKDVTIMHVRQGEAKGLGHAVLCAYPCIGNNPFAVVLPDVILDEYTADQKTENLAAMIARYKATFASQIMVAPVPECDVNKYGIADCNGVEITPGDSAKIKRMVEKPDVGDAPSNLAVVGRYVLSEKIWRLLAKTPAGAGDEIQLTDAIDMLIEQDTVEAFNMTGKSHDCGDKLGYMNAFVEYGLRDAKLGADFKKSIEKILLEQ

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Crispr_ID: NC_008345_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008345_3

3446947-3447045

Orphan

Consensus_repeat	Method
CCTAGAAGCGAAGCGCACTATCCGCGTAGCGGCCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008345_3

>merge|NC_008345|3|3446947-3447045|CRISPRCasFinder
CCTAGAAGCGAAGCGCACTATCCGCGTAGCGGCCTAGGATCTTAGCAGTGACGAAGTCACGTCCTAGAAGCAAAGCGCACTATCCGCGTAGCGGCCTAG

>NC_008345|3|3|3446947-3447045|CRISPRCasFinder
CCTAGAAGCGAAGCGCACTATCCGCGTAGCGGCCTAG	GATCTTAGCAGTGACGAAGTCACGT
CCTAGAAGCAAAGCGCACTATCCGCGTAGCGGCCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008345.1\|WP_011638317.1\|3452765_3453578_-\|YggN-family-protein	unknown	unknown	gnl\|CDD\|378556
NC_008345.1\|WP_011638322.1\|3457162_3457441_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NC_008345.1\|WP_011638308.1\|3443389_3444076_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NC_008345.1\|WP_041413657.1\|3447115_3447757_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NC_008345.1\|WP_011638300.1\|3436725_3437739_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NC_008345.1\|WP_086019764.1\|3440780_3441868_+\|IS3-like-element-ISShfr8-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_008345.1\|WP_011638311.1\|3446002_3446317_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NC_008345.1\|WP_011638312.1\|3446352_3446814_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NC_008345.1\|WP_011638315.1\|3449101_3450958_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
NC_008345.1\|WP_011638301.1\|3437991_3438525_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NC_008345.1\|WP_011638310.1\|3445433_3445982_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NC_008345.1\|WP_011638302.1\|3438653_3439757_-\|hypothetical-protein	unknown	unknown	unknown
NC_008345.1\|WP_011638314.1\|3447757_3448897_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NC_008345.1\|WP_011638319.1\|3454726_3455053_-\|YggL-family-protein	unknown	unknown	gnl\|CDD\|183281
NC_008345.1\|WP_011638316.1\|3451413_3452355_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_008345.1\|WP_011638318.1\|3453805_3454720_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NC_008345.1\|WP_011638320.1\|3455088_3455805_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_008345.1\|WP_011638321.1\|3456054_3457128_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NC_008345.1\|WP_011638309.1\|3444379_3445198_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NC_008345.1\|WP_011638307.1\|3442324_3443362_-\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364

Protein	Function_ID	Function_description	E-value
NC_008345.1\|WP_011638317.1\|3452765_3453578_-\|YggN-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	1.6485e-87
NC_008345.1\|WP_011638322.1\|3457162_3457441_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.98247e-56
NC_008345.1\|WP_011638308.1\|3443389_3444076_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	9.46322e-133
NC_008345.1\|WP_041413657.1\|3447115_3447757_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	8.44039e-114
NC_008345.1\|WP_011638300.1\|3436725_3437739_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	3.26922e-155
NC_008345.1\|WP_086019764.1\|3440780_3441868_+\|IS3-like-element-ISShfr8-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.45979e-32
NC_008345.1\|WP_011638311.1\|3446002_3446317_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	2.1903e-52
NC_008345.1\|WP_011638312.1\|3446352_3446814_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	2.81927e-60
NC_008345.1\|WP_011638315.1\|3449101_3450958_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
NC_008345.1\|WP_011638301.1\|3437991_3438525_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	4.53747e-57
NC_008345.1\|WP_011638310.1\|3445433_3445982_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.04215e-12
NC_008345.1\|WP_011638314.1\|3447757_3448897_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NC_008345.1\|WP_011638319.1\|3454726_3455053_-\|YggL-family-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	4.26641e-65
NC_008345.1\|WP_011638316.1\|3451413_3452355_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.44544e-77
NC_008345.1\|WP_011638318.1\|3453805_3454720_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NC_008345.1\|WP_011638320.1\|3455088_3455805_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	7.8946e-106
NC_008345.1\|WP_011638321.1\|3456054_3457128_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NC_008345.1\|WP_011638309.1\|3444379_3445198_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	5.94166e-107
NC_008345.1\|WP_011638307.1\|3442324_3443362_-\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0

>NC_008345.1|WP_011638312.1|3446352_3446814_+|DUF4426-domain-containing-protein
MFHSQRLSRSLLHMLLLSLITITSIGYAHAEQKLQVGHFDIHYMALSSTFITPEIAKTYGIERSSYNGLVNITVLNTNLEGNPAIPVEISGIANNLLDARITLDFKEIREGNSIYYIAEVPYRDDQEVNFTIAIKYGNQLNTSLKFKQKFYVD
>NC_008345.1|WP_011638311.1|3446002_3446317_+|YggU-family-protein
MNPVSYINDEQQGDLLLFVYVQPKASRDQIVGLYGNELKIAITAPPIDGKANAYLSKYLAKACKVAKSQVHIIKGEQGRHKQIRISQPQVIPPEIAALLSPFSL
>NC_008345.1|WP_011638310.1|3445433_3445982_+|YggT-family-protein
MNAMSFLVNTLFDLYLMVVILRFWLQLARADFYNPFSQFVVKATQPIIAPMRRLLPSVGRFDTSSMVLALIVVLVKMLVLTFIAGATVDIVTLLLFSVISVVKQAGVLLFWMLLIRAVLSWFNQGYNPIVMVMTQLTEPILAPVRKVLPAIGGLDLSVLVVFIAMNFINMLCAQYIPFWSII
>NC_008345.1|WP_011638309.1|3444379_3445198_+|pyrroline-5-carboxylate-reductase
MTQAKVCFIGAGNMTRSIISGLVKHGYPSDLIHATNPSKGKLDALQQDFSIQVSHDNHAAAQAADVIVLSVKPQLMAAVCEDLSSLDLANKLIITIAAGIPASRYQDYFKQPIKLIRTMPNTPTQIGYGMTGIYADDSISAEHKAICETLMQSGGKVVWVDKEPELDQVIALAGSSPAYFFLFIESMIASGVNMGMAEDKARLLAEQAALGAAQMVIQNQQLSVTELRQNVMSKGGTTARAVETFQQGGLVELVDKAMTNCVARAQEMAKTF
>NC_008345.1|WP_011638308.1|3443389_3444076_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTTIADRISIAQSRINQAAQKCSRSSAEISLLAVSKTKPISDIVAAYQAGQRLFGENYVQEGETKINALQADYPDIEWHFIGPLQSNKTKIVAEHFDWMHTLSRAKIAQRLHEQRPINKQPLNVCIQVNISQEQSKSGVNAEDVAMLALTISSLSNLKLRGLMAIPTATDDIQLQQQEFSQLKQIFDQLKQQYPSVDTLSMGMSGDMDIAIANGSTMVRIGSAIFGER
>NC_008345.1|WP_011638307.1|3442324_3443362_-|type-IV-pilus-twitching-motility-protein-PilT
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLARFRVNAFNQSRGAGAVFRTIPSEILSLEQLGAPEIFKKIASYPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIEDPIEFVHQNKQCLINQREVHKHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRVVDVFPEGEKSMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLDQCLQNLVNRGLITREDAMQKSSNKQANF
>NC_008345.1|WP_086019764.1|3440780_3441868_+|IS3-like-element-ISShfr8-family-transposase
MKTSKFSDSQILAILKQAEAGTPVPGLCREHGMSSATFYKWRAKFGGMDASMMARLKELEAENSRLKKMYAEERLKAEILKEAIEKKLVKPSRRRELAQKAVQDKAISIAFACALFGLSESCYRYQAKLSDENAAIADWLQQLTSTHRSWGVGLCYYFLRNVKRYRWNHKRVYRIYRELELNLRIKPKKRLKRDKPDALAVPEAINECWSMDFMHDQLEDGRSIRLLNVIDDYNREGLAIEVDFSLPAERVVRTLDQIIEWRGKPKQIRSDNGPEYISAVLAAWAEKHNVELKFIQPGNPQQNAYVERYNRTVRYEWLSQYLWNSIAEVQEHATQWLWFYNNERPNTAIGGVPPKQKLALVA
>NC_008345.1|WP_011638302.1|3438653_3439757_-|hypothetical-protein
MQLWQKFTVLSSLILFPFAASAVPVTDEVDIGGAVRVNYGWKDYDNNSKLEFELFRADVNYKSKDGLFASAQYRWYENMDVVHHAYMGYQFDEAQSVQVGVTQVPFGLLPYAAHSFWFGATYYLGFEDDYDAGIHYKNEQDGWRYDLAYFVNDEIGDGSNYDRYSFDAATTADSPYEEAGQINARVEREFTSGEVTHKLGGSLQYSQLDFMADAATVVGEDTNGLAAAAHWQLDWKKWQLQLQYIHYDYDIDNSERIALSAFQYPFEIAAEADVATVNIAKSVDVDWGPITNLNFYNDYSQVMASGQGLDDSIQNVTGVAITAGKFYSYVDWIAGKNMWFVDGAGVGINNGDTSWHSRLNINIGFYF
>NC_008345.1|WP_011638301.1|3437991_3438525_-|glutathione-peroxidase
MIKYITAIGLMALSFSTVAANCPDYLNVEARKLHSTENVNLCELTQGKAVLIVNTASHCGFTPQFEALEALHKQYADKGLVVIGFPSDDFFQEEKDEAKTADVCFINYGVTFTMVATSPVRGDEANSVFKYLDDKSAAPKWNFYKYVVSPDGQTVQQFSSRVKPDSEELKNAIESVL
>NC_008345.1|WP_011638300.1|3436725_3437739_-|ferrochelatase
MARFSGLDKDTGHKARGKTGVLLLNLGTPDAPTASAVRIYLAEFLADPRVVEIPKLIWMIILHGIILRIRPAKSAALYQQVWTEEGSPLLAISQHQQAKLAKHLQAQGYDASVHLAMRYGSPSTSSTLQAMHKQGVDNLVVLPLYPQYAAPTTGSAFDALAKELMKWRYIPALHFINTYHDNVDFIDALAASIQKDFDLHGKPQKLVMSFHGMPERNLHLGDPYYCFCMKTTRLVVEKLGFSEDDYVATFQSRFGKAKWLQPYTDATIGSLPAKGITDIAVICPAFSADCLETLEEIKGENRHVFENAGGKNFRYIECLNDNDDHINMMANLVKPFL
>NC_008345.1|WP_041413657.1|3447115_3447757_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MHTLAKQQIVLASGNKGKLAEFDQMLTAFNIEVLPQNQFNVTEVAETGTTFVENAIIKARHAAEITGKAAIADDSGIEVDALQGQPGIYSARYSGPGATETSNYLKLLDALQGETLRSARFQCVLVYMRHAKDPTPIICQASWEGTINHVPQGEQGHGYDPVFIPQGFDCSAAELTREQKNAHSHRGKALELLVSAMKAQGIILSNNTSGGHQ
>NC_008345.1|WP_011638314.1|3447757_3448897_+|radical-SAM-family-heme-chaperone-HemW
MTLQLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQQYVDALLDDLKQDLAYVQGRKVHTIFIGGGTPSLFDASQIQRILEGAQALIPFEDNIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKEKLNLLGRIHNEDEAKVAAEKAKQADYLSFNLDLMHGLPNQSFDEAMHDIDTATALAPPHLSWYQLTIEPNTLFHSKPPQLPDDENLWQIYEQGQQRLAALGYEQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKITLPDSNRIVRTVKIKHPKGYLAADKYTFETTDVVEEDRPLEYLMNRLRLMTPIPKTEFEQRTGQSAEVVKLGMQKSIERGLLTETKTHWQLTSKGHMFVNDLLSQFI
>NC_008345.1|WP_011638315.1|3449101_3450958_+|DUF885-domain-containing-protein
MSIKTKTTLVAVALSSLLSASAIANLHNMPQLSQQESTATSSQQTESEKANALFEAIFMENVMANPVNQTYLGIKQDYGKWNDLSDAAADADLARSKQQLTRLTSLDANKLNEQAALSYELLKAGLEHSISDDKWRYHTYPINQMYGVHSVVASFLINQHQVTDESDAKAYISRLNAIPTLLAQLETSLEIRAKKHIIAPKFVFPYVISDSKNIITGAPFTDTGKDSALWADATRKVNKLDITNDSKKALLAEVKRALLTKVKPAYEQLITYTKSLEARADTRDGAWKLPDGEAFYNNALARTTTTDMTADTIHDLGLSEVKRIHDEMRIIMKKVHFAGSLQEFFVFMRDDKQFYYPETDEGKTAYLAQAKSLIDTMESRLDEVFTIKPKAELVVRKVEAFREKSAGKAFYDQPAPDGSRPGSYYANLYKMEAMPKYQMEALAYHEGIPGHHMQIAIAQELQGIPKFRKFGGYTAYIEGWGLYSEYFPKEMGLYADPYSDFGRLSMELWRACRLVVDTGIHAKKWTREQAITYYVENTPNAESDAIKMVERHIVMPSQATAYKVGMIKILQLREQAKKALGAKFDIREFHTVILKNGPLPLDILEEQVNKWIKQVQSR
>NC_008345.1|WP_011638316.1|3451413_3452355_-|LysR-family-transcriptional-regulator
MLELLEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGNLLYLQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPAFMARHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPGYIAQHGNISRPEQLVEHNCLVYQGEWHEHSMWQFKKGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVYLASYLMEDEIAQGTLVPLLPDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFIKTHISSPPYWDAKFDHLYKLRK
>NC_008345.1|WP_011638317.1|3452765_3453578_-|YggN-family-protein
MTKQKLICGVALTSMLFTAGALTPAMAKMSINDEKCNVTLNYDVTVEPKKLQISDNGSEKYRVELDQLYVDGKKVTLNAKQQTLLTQYSDELSRQVPEVIDLVGDVVVMASQAVNMALTPIFGDATGSQIDKLMTGIQKRIDTMAYQQGDKFYLGSTESSIEHAFNEEFEQEIEQMVTNSMGSLMMTLGSQIMSSEGGSFEEKMNTFSQKMDNVGKDIEQQLESQSQGLEQRADKICDNFEGLLVLESQVRKDIPELAPYTLAKLGELKE
>NC_008345.1|WP_011638318.1|3453805_3454720_-|glutaminase-B
MPEQLLLQEAVDKVRSLLGKGKVAGYIPALACVDPNKIGIAVTTVDGQTIGAGDYLEPFSIQSISKVFSLTLALNLYTEDEIWSRVGKEPSGHSFNSLVQVELERGKPRNPFINAGALVIADLLQARLGAPKHRMLEVVRQLSQNATLSYDKVVADSEFQFSARNASIAYLMKSFGNFEGDVNTVLKSYFHYCALRMNCADLSRAMFYLANRGKTLDGDSLVSPVQTRQLNALLATSGLYDGAGEFAYRVGMPGKSGVGGGIIAVIPGDMSICVWSPELDINGNSLAGTAMLEQLSQKLGRSIF
>NC_008345.1|WP_011638319.1|3454726_3455053_-|YggL-family-protein
MAQNRSRRLRKKLRVDEFQELGFEINWTFDESVSEADIDNLVDQFLVEVIEPRQLGFHGGGHKQWEGIIATQAIGKCTDEDTAAVNAFWKDKPVSNLEVSDLYDIWWG
>NC_008345.1|WP_011638320.1|3455088_3455805_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSDVTTAEFNEDGKYIRKIRSFVLREGRLTKGQSQAIEAHWPAMGLDYTPQALELTQVFGRDADTVLEIGFGMGASLVQMAKAAPEQNFIGIEVHKPGIGTCLSEAGAAEVTNLRVYHHDAMEVLEHSIVDGSLERVQLFFPDPWHKKRHHKRRIVQAEFVQLIRRKLKIGGVFHMATDWENYSEHMLEIMNAAEGYKNQSTTGTVVERPEHRPLTKFEARGHRLGHGVWDIMFERTA
>NC_008345.1|WP_011638321.1|3456054_3457128_+|A/G-specific-adenine-glycosylase
MKNLTPFSERIIAWYDLHGRKSLPWQINKTPYRVWVSEIMLQQTQVATVIPYYEKFMARFPSVIDLANAHQDEVLHLWTGLGYYARARNLHKAAQHIRDALNGQFPTQFDDVVALSGIGKSTAGAVLSLSLGQHHSILDGNVKRVLARHGAIEGWPGQKHVEQQLWQLTDALTPAKNVEKFNQAMMDIGSSVCTRSKPNCAACPVAIDCVAQQTGHQSLYPGKKPKKVTPEKSAFMVVLVDNSEDSVKVQLIQRPPAGIWGGLWCFPQFEHQAELDNYLTLHNLTESEQGLAGFRHTFSHFHLDIQPVLVELSVDQATGIMEQTSALWYNIEQPAKVGLAAATERILANLAVLFATH
>NC_008345.1|WP_011638322.1|3457162_3457441_+|oxidative-damage-protection-protein
MARTVHCQHLNKSADGLDFQLYPGELGKRIFDNIGKEAWGLWQKKQTMLINEKKLNMMNVDDRKFLEEQMTNFLFEGKDVEIEGYVPPAEDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1215942 : 1223451

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011636506.1\|1215942_1217610_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.0e-39	26.7
WP_011636507.1\|1217871_1219125_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.0e-100	54.6
WP_011636508.1\|1219239_1219689_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011636509.1\|1219753_1220899_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.5e-50	36.1
WP_011636510.1\|1220963_1221623_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-25	30.3
WP_011636511.1\|1221747_1222851_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	38.4
WP_011636512.1\|1222974_1223451_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-29	46.4

DBSCAN-SWA_2

1978798 : 1999737

Vibrio_phage(41.67%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011637142.1\|1978798_1980781_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	7.3e-194	49.4
WP_011637143.1\|1980780_1980984_+	hypothetical protein	NA	NA	NA	NA
WP_011637144.1\|1980992_1982552_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	7.6e-130	49.3
WP_041412903.1\|1982517_1984545_+	peptidase S14	A0A1W6JT88	Pseudomonas_phage	6.7e-179	52.7
WP_011637146.1\|1984648_1984969_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	8.2e-15	47.7
WP_011637147.1\|1984961_1985267_+	hypothetical protein	NA	NA	NA	NA
WP_011637148.1\|1985277_1985829_+	hypothetical protein	NA	NA	NA	NA
WP_011637149.1\|1985854_1986280_+	hypothetical protein	NA	NA	NA	NA
WP_011637150.1\|1986276_1986996_+	hypothetical protein	A0A2I7S8N4	Vibrio_phage	2.3e-28	35.2
WP_011637151.1\|1987073_1990952_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	3.5e-43	38.9
WP_011637152.1\|1990988_1991366_+	hypothetical protein	NA	NA	NA	NA
WP_011637153.1\|1991400_1993839_+	hypothetical protein	A0A2I7QRV0	Vibrio_phage	1.6e-288	62.1
WP_011637154.1\|1993855_1994815_+	hypothetical protein	A0A088C4T9	Shewanella_sp._phage	7.7e-32	31.2
WP_011637155.1\|1994807_1995095_+	hypothetical protein	A0A2I7QSP0	Vibrio_phage	1.5e-07	39.0
WP_011637156.1\|1995091_1996864_+	hypothetical protein	A0A2I7QS09	Vibrio_phage	2.1e-144	44.1
WP_011637157.1\|1996897_1997110_+	hypothetical protein	A0A088C533	Shewanella_sp._phage	6.0e-14	60.0
WP_011637158.1\|1997620_1998427_+	hypothetical protein	NA	NA	NA	NA
WP_011637159.1\|1998453_1999275_+	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_011637160.1\|1999530_1999737_+	cold-shock protein	Q9AZD3	Lactococcus_phage	8.7e-18	67.2

DBSCAN-SWA_3

2116667 : 2125602

uncultured_Caudovirales_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011637261.1\|2116667_2119322_+	DUF87 domain-containing protein	A0A218M9A2	Mycobacterium_phage	1.2e-82	47.2
WP_011637262.1\|2119333_2119978_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_011637263.1\|2119986_2121318_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.6e-80	40.6
WP_011637264.1\|2121310_2121685_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.8e-05	37.6
WP_011637265.1\|2121703_2122990_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-92	42.7
WP_011637266.1\|2123474_2123813_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_011637267.1\|2123806_2124115_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	6.7e-06	37.1
WP_011637268.1\|2124111_2124468_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_011637269.1\|2124487_2124877_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.8e-17	37.8
WP_011637270.1\|2124942_2125602_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-36	45.9

DBSCAN-SWA_4

2879955 : 2889808

Acinetobacter_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011637870.1\|2879955_2882484_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.5e-34	24.9
WP_041413046.1\|2883276_2883708_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	2.2e-18	41.7
WP_011637872.1\|2883873_2884770_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	1.5e-37	36.7
WP_011637873.1\|2884942_2885278_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011637874.1\|2885286_2887146_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.9e-103	39.9
WP_011637875.1\|2887218_2887743_-	co-chaperone HscB	NA	NA	NA	NA
WP_011637876.1\|2887799_2888123_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.7e-20	40.2
WP_011637877.1\|2888137_2888521_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	79.0
WP_011637878.1\|2888593_2889808_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.7e-32	30.8

DBSCAN-SWA_5

4068296 : 4132148

Acidithiobacillus_phage(25.0%)

transposase,integrase

attL 4060227:4060241|attR 4115091:4115105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4060227:4060241	attL	NA	NA	NA	NA
WP_041412878.1\|4068296_4069841_+\|transposase	IS21-like element ISShfr5 family transposase	K4I413	Acidithiobacillus_phage	7.5e-130	46.3
WP_011637026.1\|4069869_4070628_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.6e-59	51.7
WP_011638853.1\|4074000_4075410_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_011638854.1\|4075415_4075952_-	hypothetical protein	NA	NA	NA	NA
WP_011638855.1\|4076083_4076290_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011638856.1\|4076565_4076889_-	hypothetical protein	NA	NA	NA	NA
WP_041413737.1\|4077199_4077538_-	hypothetical protein	NA	NA	NA	NA
WP_011638858.1\|4078251_4078578_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_011638859.1\|4078818_4079658_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_011638860.1\|4079744_4080875_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	4.6e-36	29.6
WP_011638861.1\|4081137_4081404_-	DksA/TraR family C4-type zinc finger protein	A0A173GD24	Pseudomonas_phage	8.4e-05	36.4
WP_011638862.1\|4082025_4082214_-	glutathione synthetase	NA	NA	NA	NA
WP_011638863.1\|4082267_4083860_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_011638864.1\|4084431_4085721_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_081430171.1\|4086176_4086290_+	hypothetical protein	NA	NA	NA	NA
WP_041413214.1\|4086449_4086629_-	hypothetical protein	NA	NA	NA	NA
WP_011638865.1\|4086656_4087145_-	hypothetical protein	NA	NA	NA	NA
WP_011638867.1\|4088543_4089152_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_041413215.1\|4089257_4089650_-	hypothetical protein	NA	NA	NA	NA
WP_041413216.1\|4089944_4090502_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_011638870.1\|4090566_4091718_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_011638871.1\|4092055_4092925_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011638872.1\|4093516_4093924_-	hypothetical protein	NA	NA	NA	NA
WP_011638873.1\|4093916_4095719_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011638874.1\|4095715_4097353_-	hypothetical protein	NA	NA	NA	NA
WP_011638875.1\|4097361_4098495_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011638876.1\|4099853_4100345_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041413218.1\|4101421_4102543_+	transcriptional regulator	NA	NA	NA	NA
WP_165870202.1\|4102671_4102842_+	hypothetical protein	NA	NA	NA	NA
WP_011638878.1\|4102936_4103359_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011638879.1\|4103410_4103677_-	hypothetical protein	NA	NA	NA	NA
WP_011638881.1\|4104935_4105157_+	S24 family peptidase	NA	NA	NA	NA
WP_011638882.1\|4105157_4106414_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-83	40.2
WP_011638883.1\|4107414_4107771_+	hypothetical protein	NA	NA	NA	NA
WP_115407389.1\|4107852_4109196_+	TolC family protein	NA	NA	NA	NA
WP_011638885.1\|4109192_4110119_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011638886.1\|4110209_4113326_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_041413220.1\|4113415_4113730_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_011638887.1\|4113761_4114121_+	hypothetical protein	NA	NA	NA	NA
WP_011638890.1\|4115543_4115984_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
4115091:4115105	attR	NA	NA	NA	NA
WP_011638891.1\|4116069_4118475_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.6e-142	46.5
WP_011638892.1\|4118471_4119551_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_004213590.1\|4119680_4120238_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
WP_006991878.1\|4121925_4124904_+\|transposase	Tn3-like element ISShfr9 family transposase	NA	NA	NA	NA
WP_002962881.1\|4125081_4125984_+	cation transporter	A0A1V0SED0	Indivirus	1.5e-08	38.1
WP_011638896.1\|4129061_4132148_-\|transposase	Tn3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008345

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection