Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_008435 Rhodopseudomonas palustris BisA53, complete genome 7 crisprs cas3,PD-DExK,DEDDh,csa3 0 3 3 0

Results visualization

1. NC_008435
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_1 157852-157953 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_2 1458535-1458723 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_3 1458806-1459023 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_4 1901511-1901686 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_5 4684930-4685035 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_6 5272951-5273127 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008435_7 5292608-5292697 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 296428-296452 3 0.88
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_CP025513 Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence 621213-621237 3 0.88
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_LR134461 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence 71678-71702 4 0.84
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_CP011520 Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-3, complete sequence 6759-6783 4 0.84
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 1340344-1340368 4 0.84
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_CP054620 Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence 177620-177644 4 0.84
NC_008435_4 4.1|1901534|25|NC_008435|CRISPRCasFinder 1901534-1901558 25 NZ_CP010898 Pandoraea vervacti strain NS15 plasmid pPV15, complete sequence 82992-83016 4 0.84
NC_008435_2 2.3|1458636|25|NC_008435|CRISPRCasFinder 1458636-1458660 25 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 1863739-1863763 5 0.8
NC_008435_6 6.2|5273069|30|NC_008435|PILER-CR 5273069-5273098 30 MN693996 Marine virus AFVG_250M857, complete genome 40542-40571 7 0.767
NC_008435_6 6.2|5273069|30|NC_008435|PILER-CR 5273069-5273098 30 MN693733 Marine virus AFVG_250M308, complete genome 40256-40285 7 0.767
NC_008435_6 6.2|5273069|30|NC_008435|PILER-CR 5273069-5273098 30 MN694508 Marine virus AFVG_250M817, complete genome 40953-40982 8 0.733
NC_008435_6 6.2|5273069|30|NC_008435|PILER-CR 5273069-5273098 30 FN297812 Vibrio phage VP58.5, complete genome 27738-27767 9 0.7
NC_008435_6 6.2|5273069|30|NC_008435|PILER-CR 5273069-5273098 30 NC_019722 Vibrio phage vB_VpaM_MAR, complete genome 26461-26490 9 0.7

1. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 3, identity: 0.88

tggtgttgggcttcggcgccggctt	CRISPR spacer
tggtgctcggcttcggcgccggcct	Protospacer
*****.* ***************.*

2. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

tggtgttgggcttcggcgccggctt	CRISPR spacer
ttgttttgggcttcggcgccgcctt	Protospacer
* ** **************** ***

3. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 4, identity: 0.84

tggtgttgggcttcggcgccggctt	CRISPR spacer
aggtgttgggcttcggcgagggctg	Protospacer
 *****************  **** 

4. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_CP011520 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-3, complete sequence) position: , mismatch: 4, identity: 0.84

tggtgttgggcttcggcgccggctt	CRISPR spacer
ccgtgttgttcttcggcgccggctt	Protospacer
. ******  ***************

5. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 4, identity: 0.84

tggtgttgggcttcggcgccggctt	CRISPR spacer
tggtgctgggcttcgtcgccggcaa	Protospacer
*****.********* *******  

6. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

tggtgttgggcttcggcgccggctt	CRISPR spacer
tggtgttgggcttcgccgtcggcgc	Protospacer
*************** **.**** .

7. spacer 4.1|1901534|25|NC_008435|CRISPRCasFinder matches to NZ_CP010898 (Pandoraea vervacti strain NS15 plasmid pPV15, complete sequence) position: , mismatch: 4, identity: 0.84

tggtgttgggcttcggcgccggctt	CRISPR spacer
ccgtgttgttcttcggcgccggctt	Protospacer
. ******  ***************

8. spacer 2.3|1458636|25|NC_008435|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gctcgacagcgaaggcccctatcgg	CRISPR spacer
catcgacagcgacggcccctatctt	Protospacer
  ********** **********  

9. spacer 6.2|5273069|30|NC_008435|PILER-CR matches to MN693996 (Marine virus AFVG_250M857, complete genome) position: , mismatch: 7, identity: 0.767

ctttcttgaccgtcttcttggacgccgtct	CRISPR spacer
atgccgtgaccgtcatattggacgccgtca	Protospacer
 * .* ******** * ************ 

10. spacer 6.2|5273069|30|NC_008435|PILER-CR matches to MN693733 (Marine virus AFVG_250M308, complete genome) position: , mismatch: 7, identity: 0.767

ctttcttgaccgtcttcttggacgccgtct	CRISPR spacer
atgccgtgaccgtcatattggacgccgtca	Protospacer
 * .* ******** * ************ 

11. spacer 6.2|5273069|30|NC_008435|PILER-CR matches to MN694508 (Marine virus AFVG_250M817, complete genome) position: , mismatch: 8, identity: 0.733

ctttcttgaccgtcttcttggacgccgtct	CRISPR spacer
acgccgtgaccgtcatattggacgccgtca	Protospacer
 . .* ******** * ************ 

12. spacer 6.2|5273069|30|NC_008435|PILER-CR matches to FN297812 (Vibrio phage VP58.5, complete genome) position: , mismatch: 9, identity: 0.7

ctttcttgaccgtcttcttggacgccgtct	CRISPR spacer
ttttcttgaccttcttcttggatatgtttg	Protospacer
.********** **********...  *. 

13. spacer 6.2|5273069|30|NC_008435|PILER-CR matches to NC_019722 (Vibrio phage vB_VpaM_MAR, complete genome) position: , mismatch: 9, identity: 0.7

ctttcttgaccgtcttcttggacgccgtct	CRISPR spacer
ttttcttgaccttcttcttggatatgtttg	Protospacer
.********** **********...  *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2110150 : 2138227 29 Rhodobacter_phage(27.27%) head,tail,transposase,capsid,protease,portal NA
DBSCAN-SWA_2 3110288 : 3119538 10 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_3 3675249 : 3683271 9 Prochlorococcus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage