CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008599	Campylobacter fetus subsp. fetus 82-40, complete genome	2 crisprs	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,DEDDh,csx23,cas10,csm3gr7,csx10gr5,csx19	0	8	1	0

1. NC_008599

CRISPR-Cas detection and classification

Crispr_ID: NC_008599_1

• CRISPR_ID: NC_008599_1
• CRISPR_location: 655350-656762
• CRISPR_type: TypeI-B
• Repeat_type: NA
• Spacer_info: 21 spacers

Consensus repeat of NC_008599_1

Consensus_repeat	Method
GTTTGCTAATGACAATGTTTGTGTTGAAAC	PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRT

spacers of NC_008599_1

>1.1|655380|34|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TCATTTTTGTCATCAGGACCAGGAGAACTGACAC
>1.2|655444|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
>1.3|655510|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA
>1.4|655576|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA
>1.5|655642|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT
>1.6|655708|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
>1.7|655774|35|NC_008599|PILER-CR,CRISPRCasFinder,CRT
CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
>1.8|655839|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
>1.9|655905|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT
>1.10|655971|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
>1.11|656037|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
>1.12|656103|37|NC_008599|PILER-CR,CRISPRCasFinder,CRT
ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG
>1.13|656170|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
>1.14|656236|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
>1.15|656302|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
>1.16|656368|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC
>1.17|656434|35|NC_008599|PILER-CR,CRISPRCasFinder,CRT
AATCCAACTTAACAAAAATGTTATATAAAATCACC
>1.18|656499|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
>1.19|656565|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
>1.20|656631|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
>1.21|656697|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT
CATCCTCCTTTTAATTTATTACATTTAAACAATTTA

CRISPR arrays and Neighbor proteins around NC_008599_1

CRISPR arrays

The CRISPR arrays of NC_008599_1

>merge|NC_008599|1|655350-656762|PILER-CR,CRISPRCasFinder,CRT
GTTTGCTAATGACAATGTTTGTGTTGAAACTCATTTTTGTCATCAGGACCAGGAGAACTGACACGTTTGCTAATGACAATGTTTGTGTTGAAACTATAAAGGGACCTACGAACTAAGCTAGAACCCTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACTCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTAGTTTGCTAATGACAATGTTTGTGTTGAAACTGAGCATATTCTGGATAAGATAAAAGTGCGTGAATAGTTTGCTAATGACAATGTTTGTGTTGAAACAGCATTTTAACGATAGAATCAAACTTTTTAGCTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACGTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGTGTTTGCTAATGAGAATGTTTGTGTTGAAACCGGGGAGCAACGTTAGCAATCTCATTTCCGTCCATGTTTGCTAATGACAATGTTTGTGTTGAAACTGGGGATTCGATGAAATTTTTAACTATATAGCATTCGTTTGCTAATGACAATGTTTGTGTTGAAACTTTACCAATTTCTATTACTACCGCGTTCACCGGTATGTTTGCTAATGACAATGTTTGTGTTGAAACTGTATGTTGGTAGCTTTTATGGTTACTTTACATAACGTTTGCTAATGACAATGTTTGTGTTGAAACTAAACTATTTCGTTATCCTGGTTGATACCGCTTAAAGTTTGCTAATGACAATGTTTGTGTTGAAACATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGGGTTTGCTAATGACAATGTTTGTGTTGAAACGAATTTAATCGGAGTTTACAGGCCGGATCTAATTTCGTTTGCTAATGACAATGTTTGTGTTGAAACTCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAAGTTTGCTAATGACAATGTTTGTGTTGAAACGAATTTAATCGGAGTTTACAGGCCGGATCTAATTTCGTTTGCTAATGACAATGTTTGTGTTGAAACTAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACCGTTTGCTAATGACAATGTTTGTGTTGAAACAATCCAACTTAACAAAAATGTTATATAAAATCACCGTTTGCTAATGACAATGTTTGTGTTGAAACTAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACAGAACTGTTTTAACCTCACTTCCATCAATCTCTTTTGTTTGCTAATGACAATGTTTGTGTTTAAACCAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCTGTTTGCTAATGACAATGTTTGTGTTGAAACCATCCTCCTTTTAATTTATTACATTTAAACAATTTAGTTTGCTAATGACAATGTTTGTGTTGAAAC

>NC_008599|1|1|655350-656762|PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTTTTGTCATCAGGACCAGGAGAACTGACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGAGAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>NC_008599|1|1|655350-656762|CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTTTTGTCATCAGGACCAGGAGAACTGACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGAGAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>NC_008599|1|1|655350-656762|CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTTTTGTCATCAGGACCAGGAGAACTGACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATAAGTTGTTAAGATTATGCAACTTTTTTGTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGAGCATATTCTGGATAAGATAAAAGTGCGTGAATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCATTTTAACGATAGAATCAAACTTTTTAGCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGAGAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTACCAATTTCTATTACTACCGCGTTCACCGGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAAGCCGAATTACTCCCATTTTTTTTTGACTTGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAATTTAATCGGAGTTTACAGGCCGGATCTAATTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCTAGAAAATGTAAAATGCTCCCATCCTTCTACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_008599.1|WP_011731887.1|648531_650454_+|hypothetical-protein	unknown	unknown	gnl|CDD|274008
NC_008599.1|WP_010404295.1|657521_657854_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002850361.1|657894_658101_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_010404290.1|658412_658826_-|HK97-gp10-family-phage-protein	unknown	unknown	gnl|CDD|377415
NC_008599.1|WP_010404416.1|662427_663363_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002849042.1|646266_647490_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143398
NC_008599.1|WP_002849046.1|651139_651511_+|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl|CDD|223799
NC_008599.1|WP_002849050.1|652778_653555_+|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl|CDD|234710
NC_008599.1|WP_011731888.1|650450_651146_+|methyltransferase	unknown	unknown	gnl|CDD|226608
NC_008599.1|WP_024305373.1|651486_652782_+|hypothetical-protein	unknown	unknown	gnl|CDD|274350
NC_008599.1|WP_010404288.1|658822_660394_-|hypothetical-protein	unknown	unknown	gnl|CDD|222859
NC_008599.1|WP_002849039.1|644761_646105_+|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl|CDD|366662
NC_008599.1|WP_002849063.1|663352_663652_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002849044.1|647568_648522_+|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl|CDD|379355
NC_008599.1|WP_002849062.1|661690_662428_+|hypothetical-protein	unknown	unknown	gnl|CDD|379643
NC_008599.1|WP_011731891.1|654057_654795_+|YaaA-family-protein	unknown	unknown	gnl|CDD|377151
NC_008599.1|WP_011731892.1|656772_657564_+|hypothetical-protein	unknown	unknown	gnl|CDD|213641
NC_008599.1|WP_011731890.1|653554_654061_+|HIT-domain-containing-protein	unknown	unknown	gnl|CDD|238606
NC_008599.1|WP_010404292.1|658081_658315_+|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl|CDD|378235
NC_008599.1|WP_011731893.1|660497_661559_-|phage-portal-protein	unknown	unknown	gnl|CDD|273680

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_008599.1|WP_011731887.1|648531_650454_+|hypothetical-protein	gnl|CDD|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.17328e-08
NC_008599.1|WP_010404290.1|658412_658826_-|HK97-gp10-family-phage-protein	gnl|CDD|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	0.0028103
NC_008599.1|WP_002849042.1|646266_647490_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|143398	cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).	0
NC_008599.1|WP_002849046.1|651139_651511_+|YkgJ-family-cysteine-cluster-protein	gnl|CDD|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.65843e-13
NC_008599.1|WP_002849050.1|652778_653555_+|indole-3-glycerol-phosphate-synthase-TrpC	gnl|CDD|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	6.08927e-122
NC_008599.1|WP_011731888.1|650450_651146_+|methyltransferase	gnl|CDD|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	4.08698e-54
NC_008599.1|WP_024305373.1|651486_652782_+|hypothetical-protein	gnl|CDD|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.35572e-08
NC_008599.1|WP_010404288.1|658822_660394_-|hypothetical-protein	gnl|CDD|222859	PHA02535, P, terminase ATPase subunit; Provisional.	4.24326e-46
NC_008599.1|WP_002849039.1|644761_646105_+|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl|CDD|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_008599.1|WP_002849044.1|647568_648522_+|SidA/IucD/PvdA-family-monooxygenase	gnl|CDD|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	1.83609e-57
NC_008599.1|WP_002849062.1|661690_662428_+|hypothetical-protein	gnl|CDD|379643	pfam14550, Peptidase_S78_2, Putative phage serine protease XkdF. This domain is largely found on phage proteins. In a number of cases the domain is associated with a SAM-dependent methyltransferase. Members are serine peptidases.	1.02797e-36
NC_008599.1|WP_011731891.1|654057_654795_+|YaaA-family-protein	gnl|CDD|377151	pfam03883, H2O2_YaaD, Peroxide stress protein YaaA. YaaA is a key element of the stress response to H2O2. It acts by reducing the level of intracellular iron levels after peroxide stress, thereby attenuating the Fenton reaction and the DNA damage that this would cause. The molecular mechanism of action is not known.	3.02596e-45
NC_008599.1|WP_011731892.1|656772_657564_+|hypothetical-protein	gnl|CDD|213641	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions].	0.00076193
NC_008599.1|WP_011731890.1|653554_654061_+|HIT-domain-containing-protein	gnl|CDD|238606	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.	3.53244e-47
NC_008599.1|WP_010404292.1|658081_658315_+|carbamoyl-phosphate-synthase-large-chain	gnl|CDD|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	2.71656e-05
NC_008599.1|WP_011731893.1|660497_661559_-|phage-portal-protein	gnl|CDD|273680	TIGR01540, Phage-like_element_PBSX_protein_XkdE, phage portal protein, PBSX family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. This family shows clear homology to TIGR01537. The alignment for this group was trimmed of poorly alignable N-terminal sequence of about 50 residues and of C-terminal regions present in some but not all members of up 180 residues. [Mobile and extrachromosomal element functions, Prophage functions].	1.09952e-28

Protein sequences

>NC_008599.1|WP_011731891.1|654057_654795_+|YaaA-family-protein
MKILFSPSESKMSGGSRDASVNFSWVFPNLNDKRLEILEMYNSFLKKANKNELQALFGLKKDNELEYYSSDLFSRPLMKAILRYNGVAYEHLNYRNLDERSRKMIDENTIIFSNLYGVILAKDMIFDYKLKQGESIGGFRTEVFYKKYFSGVLDDFLDSDILDLRAGFYEKFYSLTKPYTTIKFLKNGKVVSHFAKAYRGIVLRCIALNQISSLDEFYNMQIPNLKINKIIKNRLKTEIVVDIIG
>NC_008599.1|WP_011731890.1|653554_654061_+|HIT-domain-containing-protein
MEHEFSPWRAEYFKTRKDDGVTDHSCVFCDIAENIQNDEENFVLFRAKNCFAVMNRYPYTLGEFMIIPYIHTDNIENLDKNIWSEMSDLVQLGVGVLKESLNANGVNIGMNLGSAAGAGIAEHIHYHLVPRWSRDTNFITTIAYTRVHGVPFLDQYHTLKKAFQKVFK
>NC_008599.1|WP_002849050.1|652778_653555_+|indole-3-glycerol-phosphate-synthase-TrpC
MILDEIISKTKINLENIKENLPLCRLENALTNSYIPRDVKQVLKQKNSINIIAEIKKASPSKGVIKEDFDPLKIAFEYEKAGVSAFSILTEPFYFQGSLEYIALVRRYTNTPILRKDFIVDIYQIAEARLYGADFILLIAKALDKFYLKTLFEYAKSLNLEVLMEIHDETDLEKALFVDADIIGINHRNLQTFDMDMELCIKLIPLIPSGKIIVAESGLYNNSELINLKKQGADAFLIGEHFMRQESIYNAVKDMKGE
>NC_008599.1|WP_024305373.1|651486_652782_+|hypothetical-protein
MYWCRAALIFTLFLAGCADKQSVGAKKNETFFKYSDINTTIDLEAMKGFYLLGDAKSKDALEVFYMLYKTTKKPIFLKEALKIAFVIKDDRLDELITDAREILNADYDVIRIEIGYYILKSQIKDAKDLALNLIQKESDNSINHSILATIYLFNDEPIRALKEFKKAYEIEGSEENLLKLVDMLDNKLDRTNEAIRYLNNWIGENGCSKPVCFTLLNIYSAKGELDLMIEVYIKLYEAYEESDFLNRALEILLYKKDVISAKELLEKYSFNEPILMEIYAELKEFQKAYNVAQDLYNRSQNPEYMARMAIYKYEQSSKNISKFELDMVVKLFEGSVYALNSPIYFNYYGYLLIDYEIDLKKGLDIAKKAYILDPNSPYIIDSIAWGYFKLGECKEAKMWMDKIQSDTKFMKEDEAKAHKTAIDKCFNKGTK
>NC_008599.1|WP_002849046.1|651139_651511_+|YkgJ-family-cysteine-cluster-protein
MLKEFGFDYCFDSSKCEVCGAKCCTGDSGYIWISEAEMESLSSHLKLSLPEFKKLFTYRVGVRFSLKEKEYNGAYACLFFDENNKNCSVYEFRPKQCRTFPFWDYFKKHFNELEKECIGVERL
>NC_008599.1|WP_011731888.1|650450_651146_+|methyltransferase
MKLFQLKEGYRYNSDTLFLYDFISKNQIFGNVLDVGCGCGILGLLLKRDFINLNLSSIDIQEINSTITQLNADVNNLVAAVICDDFSKFKSEIKFDFIVSNPPFYNSQITKSENEHISISRYSSSLDPLSFFKSVNANLKPQGVLYFCYDARRVGEILPILSSLKLKLTKLRFVHSRISESSKLALFEAKKSSKSMCEIYPPLIIFDENEFSGEVKEIFKKSDTKSEIYEC
>NC_008599.1|WP_011731887.1|648531_650454_+|hypothetical-protein
MKFRKFAQILFLVGTIFFILGCETKDEKALNQDKLKFSDLSMAEQDRYISKDELDKLGSYLTLLNNRNIDINSDEIPSGSVDELRDKIAELIQKNRLLFADNEELAKKNLEIITKLREQNSLRESENKLISAKYLDSMNEVEKQHYKNINDLTKKINEVQKENIQSIKSYEQKIIGLENKIDELEKELSKKDINFNEKVSSATKDQLEKNKELSQKNSYLLEQTQVLKKQVDTLSKELDSKLADKKTQIDTLNQTILTKDNKINDLLASHTNEIIELQNKHSKALYDIKNELDRQKNDYFGELNLKNSELAKLNNDFKEYKLKKDEELKNAENRVLTNYKKIETQRLNAIKSDYERIIFEQNRTIAAFEGKMINLELKFKKELEAKDANYVNTLENLKQKSLFLKNDEDRLRAEFDKNITSLKSQITLKNIQISELDSKIKELENEKNDIKKIQNYEILNNMITKLNAQNEELKNYAKKALDEAKKMVLEAENKAKEQNDKLKNYYEELIKNIKNQDNQPVLSDINVDSKRFLSEISCLSLDKSAKLDKDCENKLNDMIKKYGKSRIYEIKAVISDFKFLGDDKVGELKNVNLLNLKSTKDMLNAASKAINSKIKDPMLAYSKDVLLEQSGYGFVIKVYE
>NC_008599.1|WP_002849044.1|647568_648522_+|SidA/IucD/PvdA-family-monooxygenase
MENIYDVVVIGGGPFGIATVVEAKYNGFKNVLLLEKGDNHSQTIRKFYKDGKRVDKVYKGLDSQTHGNVEFFDGTKESTLNYFDNLLDNGKIDAVFNIEVESVKKDGDIFNIVTSKNTYKSKNVMIGIGRMGKPNKPEYKIPPSLTQIVNFNLNSCNCGENILVIGGGNSAAEYAIELSKCNTVTLCYRKEKFTRLNEINEAQVFEYFNDKKLNLKLGIDVIGLDNENGKVKVNFSNNSSEIYDRIIYAIGGSTPVDFLQKCGIELNKDGEPIVDEHLQTNTPRLFVGGDIASKNGGSIVVALNDAHTVIDYIIKSK
>NC_008599.1|WP_002849042.1|646266_647490_-|glutamate-5-semialdehyde-dehydrogenase
MEKLLNNLKNSSKSLSILTQTQRENLIINIANEIMSAKDEILSANKIDLDLAQDLSSALKDRLKLTSKSIENLCNSIKNIANLKDVIGVIKDGWQTKSGLKIEKITIPLGNIATIYESRPNVTAEVAALCIKSANGCALKGGKEAKNTNLAIIKAIHKALQKCGLDKNCVVYLDIDRNEVKKLINMDKYLDLIVPRGGENLVKFVSQNATIPVLKHDKGLCHIYVDEFADLDKALSICVNAKCSRPGVCNAAETILVHEEVANEFIPNLKKSLDEFNVIIFGCKKTAKIIDCELANEQNYSTEYLDFKLNLKIVKNLEESLEHISEFSSGHSEAVISESYSICERFLSLVDSACVYANASTRFSDGGEFGFGAEIGISTNKLHARGPVGLNELTTYKYIIRANGQIR
>NC_008599.1|WP_002849039.1|644761_646105_+|3-deoxy-7-phosphoheptulonate-synthase-class-II
MSKWNRDSWRDYNILQQPHYPDKNELKNAEDKLKSLPPLVFAGEVRNLKDELKNVTLGKSFLLQGGDCAESFSNFSANGIRDMFKIMLQMAIVLTFAGGCPVVKVGRVAGQFAKPRSSDFEDIDGVKLPSYRGDIINGFDFTEEARIPDPKRMIDAYYQSASTLNLLRAFSRGGLANLNEVHRWNLGFIKKAELDNKFEKLADELTGALKFMEACGVTTQNTPTLSETKLYTSHEALLLPYEEALTRVDSLTNEWYDCSAHMLWIGERTRGINDAHVHFLSGIKNPIGCKIGPDGKPGDIISLAGKLNPDNEPGRLNIIIRMGADKIEDRLPAILNYVKKEGLNILWSIDPMHGNTIKASSGFKTREFNNVMREVKSFFEIHRACGTIAGGVHLEMTGQDVTECVGGAFNVTEDSLGNRYETQCDPRLNADQALELAFLIADLVKKR
>NC_008599.1|WP_011731892.1|656772_657564_+|hypothetical-protein
MAETLKEKFKGVLSANTSYFEGVSDHIISQAQNIARVNQSSKYGVKHYKVLARIDSRTSDICRSMNGRIIPASHIEAQSNNIQNAKDINEKKAAAIWRNEPFLGKILPSNFGLPPYHFRCRTELVPVWINEEEIDGVKMKNTSPLSKDEVVKHIDKTGVERVIKSENTHMFEKHDISKKDVIKALNSINAIAPHLKNNQRSVAKSDNGLFLVFEADKIVTAYRPTNIKERLNLDKHFKNNSKPDKTEVIKWKMRNLTYIFTKI
>NC_008599.1|WP_010404295.1|657521_657854_+|hypothetical-protein
MENEKFNIYFYKDIEWFIIADGIKNESEVPKYEDNELAYSFGVYKVFLDGKIGFISDINTPNDATLKTVEKYEYIAEICTFNVYKNDKFAYKFTGTFIDALEYIKANFGK
>NC_008599.1|WP_002850361.1|657894_658101_+|hypothetical-protein
MTIIEAFSKTKTLQNQNRNAVVKIVKKNYSGYDVQIEPVELTVIKNSLEMISQNANSFMANVNAKYGK
>NC_008599.1|WP_010404292.1|658081_658315_+|carbamoyl-phosphate-synthase-large-chain
MQNMENNSAIIEPTIDDISSETLEKVGDVIAQIRALPNDEFRQLNFQPSSQPRLNGLFVKDTKFYNLTRDGFSLMVT
>NC_008599.1|WP_010404290.1|658412_658826_-|HK97-gp10-family-phage-protein
MNKIFKNFMFRVGAEVVNESKAIAPFKTGNLKKDIQVFKADQTSVTIGNSKLAPYAKFVHFGTKPHIIRVKKAKALANKKAGLCFGKQVNHPGTKAQPYLEDGLNNYISSSGLARAKEDLAKDVRNKVLNDIKKALK
>NC_008599.1|WP_010404288.1|658822_660394_-|hypothetical-protein
MTYTKEFKEECVNLLKSGVSALALTRQTGVSRPTLAKWLKTYEKENFSIDNAINFTKKKIEELSKNDQTPQGVVMLSELVSALAKLENGVKKVKSIKDKSRPIINMDSPTANELKKRILEHGNLYAYQKEFLQSNDTFRIVLKSRQIGFSYVSSADALIGAVAGRDQLFLSASEEQALILMRYMRHWAKEYGISFKKDSEHEVVLENGAYIKSFANNFRTVQGFAGDIWMDEFAWYPNPKRIWHAFVPSIGAIKGRLTILSTPFEERSLFHQIYSDKTKFHMFKRFCVSIYKAIEDGLDFDLETMRDLFDTDTWASAYECQFVDDESSLLSISLIKSCVDNKAHYFTPKSSECIYAGYDVGRVSDRSTLAGVVLENGVYKTALMDILAKARFEEQKEHLTSFLKTYPISVLKIDKTGIGMNLAENMHDKFKSRVSGVWFSNTRKEEMALNLKKAFEDKLIKIPNDPLLIADIHAIKRTIGAKSFKYDAKRNEYGHADRFWALALALSHIGVVRAKKSGGAIII
>NC_008599.1|WP_011731893.1|660497_661559_-|phage-portal-protein
MNRFFIEKDAKQSLQIGEETTSTSGIIEPFFSFNQLLEAYYANVYHRRAIKIKAGLLSQIETEESDLEKFLPAGVSPKNFLNTFAFNLELYGNAAIEKAGGSTSYLFYNLPANQMRLKKDRRLFQKVNEKIVELEGYHFFYYSPNSRYYGEPDYLAALQQILINQKADLYNDKFFDNGARPDLAIIYENAEPSEEQIKAFENFFGSNFRGYNNSHKTLIIYGENSANDKDAKIRFEELGRVSDLSFKELKSVTRDEIAVAHAIPPRLLGIVQGSALGGSGELSGQLQMFNELEIKPKIEMIEQFFSNIGIKVVLKAMDTTSFKDDGEIMTTLVGSGILSVEEARSILGWQKNI
>NC_008599.1|WP_002849062.1|661690_662428_+|hypothetical-protein
MAKRLKDIAITHISLVKEGANGKSVIYKSKDALEDYFRSVKIAKNDTEKGIVYGIVYSPDEIDTQGDAASAAEIEKAAFSFMKGLNIKNVDRDHNFKPEGAYICESWIVKSGDPLFPNEKEGSWAVGIKLESDELKEAVKKGDLKALSMAGTAIKEEDDGLLKSILKGFEAILKGFNAEKNIKEGEQLEREKEVAEVIKGLSSIKEKLDELDSLKKDMNELKNELKKSKQENATQTNENDIGGLL
>NC_008599.1|WP_010404416.1|662427_663363_+|hypothetical-protein
MAKNLRELLKATGTINAVDMYSTSTLRPEVSNKIIKTIIDKSDFLSKVTLDKTKKLSKSFDTWNLASGILVRVNSGDKPTNAQRQKIGVSSVLIENKVVQLFAKITQDTLEDNAENPNFENETFDSFATAFSNDLQNLGMIGSKDDYAESKFENLNKGWFTLAKESTKTKKLEHKAASKITDRLIAMVENANEDVLNQSVIIVSKKDLIAYNKEIGGKNGGLSILLNKGADNILGVPLIGASFVKSGEYMLTPLKNLIFSIGLDIRRQRWYDNEESSLKYKFEVFCDYQIGVPEWVVLSTTNEADNDGDGV
>NC_008599.1|WP_002849063.1|663352_663652_+|hypothetical-protein
MEFEKLKESLEARAKASLLNPNEITAEALEFSTNETLEFCKGKEVQSWAVMDFAMTRLKIYLKIELSEADIILLKNACKEIDASKIIEGKGGGLLWAAV

Crispr_ID: NC_008599_2

• CRISPR_ID: NC_008599_2
• CRISPR_location: 674442-676253
• CRISPR_type: TypeI-B
• Repeat_type: NA
• Spacer_info: 27 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

Consensus repeat of NC_008599_2

Consensus_repeat	Method
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	PILER-CR

spacers of NC_008599_2

>2.1|674472|36|NC_008599|CRISPRCasFinder,CRT
TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT
>2.2|674538|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG
>2.3|674604|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG
>2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA
>2.5|674734|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA
>2.6|674801|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT
>2.7|674867|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG
>2.8|674933|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA
>2.9|674999|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCATTAAAACACGATATTGTGATCCGCCTTTCATAT
>2.10|675065|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR
CCTTTATAATCTATACTAAAACCATTTAATATAATAT
>2.11|675132|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
>2.12|675198|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
>2.13|675264|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR
GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT
>2.14|675331|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC
>2.15|675397|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
CCATTTAGCATATCATATACTTGATCTGCCATTTAT
>2.16|675463|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA
>2.17|675529|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC
>2.18|675595|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA
>2.19|675661|35|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC
>2.20|675726|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
>2.21|675792|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
>2.22|675858|35|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG
>2.23|675923|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT
>2.24|675989|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTAAATCTCCTTATCGCTTATTATATTTATTAATTT
>2.25|676055|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR
TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA
>2.26|676122|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR
ATGGAATATTTTTGTTAAACGCATTCATACAAAATT
>2.27|676188|36|NC_008599|CRT
GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTT

CRISPR arrays and Neighbor proteins around NC_008599_2

CRISPR arrays

The CRISPR arrays of NC_008599_2

>merge|NC_008599|2|674442-676253|CRISPRCasFinder,CRT,PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAACTCGTTAATATTATTTTTGTTGCAATGTTTGCATTTTGTTTGCTAATGACAATGTTTGTGTTGAAACTCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATGGTTTGCTAATGACAATGTTTGTGTTGAAACAGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGGGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTGTCATCAGAACCAGGACCAGGAGAACCTGAGTTTGCTAATGACAATGTTTGTGTTGAAACTGATGTATTGACTTTGAAGATAGCAATCATAGGCAAAGTTTGCTAATGACAATGTTTGTGTTGAAACGGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAATGTTTGCTAATGACAATGTTTGTGTTGAAACCTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCGGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATAGTTTGCTAATGACAATGTTTGTGTTGAAACTCATTAAAACACGATATTGTGATCCGCCTTTCATATGTTTGCTAATGACAATGTTTGTGTTGAAACCCTTTATAATCTATACTAAAACCATTTAATATAATATGTTTGCTAATGACAATGTTTGTGTTGAAACGCATATTAACAAGCTAAATGACTTTCTTAAAAGTAAGTTTGCTAATGACAATGTTTGTGTTGAAACGCATATTAACAAGCTAAATGACTTTCTTAAAAGTAAGTTTGCTAATGACAATGTTTGTGTTGAAACGGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTATGTTTGCTAATGACAATGTTTGTGTTGAAACGATAATCAAAATTTTACAAAGCAAGTTCTTGTACACGTTTGCTAATGACAATGTTTGTGTTGAAACCCATTTAGCATATCATATACTTGATCTGCCATTTATGTTTGCTAATGACAATGTTTGTGTTGAAACACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCAGTTTGCTAATGACAATGTTTGTGTTGAAACTCTGATAAAATGTATTTGGATCAATACCTAAAGCTCGTTTGCTAATGACAATGTTTGTGTTGAAACTCGTAATCTTCTTCCATAATTTTAAAGTATAGATTAGTTTGCTAATGACAATGTTTGTGTTGAAACTCGAATCCGTATGTGTTTACAACTTCTGAATCTTCGTTTGCTAATGACAATGTTTGTGTTGAAACTTGAAATACATATCTGAGTAAAATGGAGCCCACTCTGTTTGCTAATGACAATGTTTGTGTTGAAACTTGAAATACATATCTGAGTAAAATGGAGCCCACTCTGTTTGCTAATGACAATGTTTGTGTTGAAACTCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAGGTTTGCTAATGACAATGTTTGTGTTGAAACTCGAAATACAAGCTCGCGCAAAATGGAATCCATTCTGTTTGCTAATGACAATGTTTGTGTTGAAACTTAAATCTCCTTATCGCTTATTATATTTATTAATTTGTTTGCTAATGACAATGTTTGTGTTGAAACTTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTAGTTTGCTAATGACAATGTTTGTGTTGAAACATGGAATATTTTTGTTAAACGCATTCATACAAAATTGTTTGCTAATGACAATGTTTGTGTTGAAACGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGCCTG

>NC_008599|2|2|674442-676187|CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTAAAACACGATATTGTGATCCGCCTTTCATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTTATAATCTATACTAAAACCATTTAATATAATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCATTTAGCATATCATATACTTGATCTGCCATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTAAATCTCCTTATCGCTTATTATATTTATTAATTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGGAATATTTTTGTTAAACGCATTCATACAAAATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>NC_008599|2|2|674442-676253|CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGTTAATATTATTTTTGTTGCAATGTTTGCATTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTAAAACACGATATTGTGATCCGCCTTTCATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTTATAATCTATACTAAAACCATTTAATATAATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCATTTAGCATATCATATACTTGATCTGCCATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTAAATCTCCTTATCGCTTATTATATTTATTAATTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGGAATATTTTTGTTAAACGCATTCATACAAAATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTT
GTTTGCTAATTTTTAACACAAAATTGCCTG

>NC_008599|2|2|674508-676187|PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTCTAAAGCAGAAACTAAAAAGCCATATCCGATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTGTCATCAGAACCAGGACCAGGAGAACCTGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGATGTATTGACTTTGAAGATAGCAATCATAGGCAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGCGCAGCCGTAGAATTAGGGCTTAGTTTCGGCAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTTTTTCAAGCTCGATTTTAATATCCCATTGCGCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTACCGTTTTGAAAATCAACAAAAAGTTCTATA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCATTAAAACACGATATTGTGATCCGCCTTTCATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTTATAATCTATACTAAAACCATTTAATATAATAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GCATATTAACAAGCTAAATGACTTTCTTAAAAGTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGGATATGGTAAAATCTGCAGTTAAATCTAAGTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GATAATCAAAATTTTACAAAGCAAGTTCTTGTACAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCATTTAGCATATCATATACTTGATCTGCCATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACTTTTAGGTGTTGCAAGGAGATAGTAAGAGATGCA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGATAAAATGTATTTGGATCAATACCTAAAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGTAATCTTCTTCCATAATTTTAAAGTATAGATTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAATCCGTATGTGTTTACAACTTCTGAATCTTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTGAAATACATATCTGAGTAAAATGGAGCCCACTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTGCTTTTTGTCTTTGCTATTTTACTTTTAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCGAAATACAAGCTCGCGCAAAATGGAATCCATTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTAAATCTCCTTATCGCTTATTATATTTATTAATTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTATCTATGATTTGGACGTTTGTGAGCGCGGAGCTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGGAATATTTTTGTTAAACGCATTCATACAAAATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_008599.1|WP_011731895.1|665849_666566_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|273848
NC_008599.1|WP_011731907.1|677607_678390_+|hypothetical-protein	unknown	unknown	gnl|CDD|213641
NC_008599.1|WP_002849070.1|679244_679472_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002850361.1|678702_678909_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002849068.1|679069_679318_-|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_011731900.1|672306_672792_+|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_008599.1|WP_011731909.1|680199_681645_+|acetyl-CoA-carboxylase-subunit-A	unknown	unknown	gnl|CDD|169452
NC_008599.1|WP_011731898.1|669179_669941_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl|CDD|131641
NC_008599.1|WP_080512716.1|669928_672310_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_008599.1|WP_011731908.1|678365_678662_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002849065.1|664683_665148_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_041738340.1|672800_673802_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_008599.1|WP_011731905.1|676319_676790_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_011731902.1|673798_674098_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_008599.1|WP_002849077.1|681874_682591_+|arginyltransferase	unknown	unknown	gnl|CDD|234939
NC_008599.1|WP_011731897.1|668229_669183_+|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl|CDD|377458
NC_008599.1|WP_049752878.1|676924_677566_-|DNA-adenine-methylase	unknown	unknown	gnl|CDD|223415
NC_008599.1|WP_152791336.1|666818_668246_+|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_008599.1|WP_002849076.1|681651_681888_+|hypothetical-protein	unknown	unknown	unknown
NC_008599.1|WP_002850371.1|665177_665393_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_008599.1|WP_011731895.1|665849_666566_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	1.1e-17	59.4	4.5
NC_008599.1|WP_041738340.1|672800_673802_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.9e-122	403.2	9.4
NC_008599.1|WP_011731902.1|673798_674098_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-20	67.7	0.4
NC_008599.1|WP_152791336.1|666818_668246_+|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	2.6e-102	338.2	59.3
NC_008599.1|WP_011731897.1|668229_669183_+|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	1.8e-24	81.4	0.0
NC_008599.1|WP_011731898.1|669179_669941_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	7.7e-42	138.2	0.2
NC_008599.1|WP_011731900.1|672306_672792_+|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	1.2e-46	153.6	0.4
NC_008599.1|WP_080512716.1|669928_672310_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	1.4e-41	137.4	0.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_008599.1|WP_011731895.1|665849_666566_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.62733e-14
NC_008599.1|WP_011731907.1|677607_678390_+|hypothetical-protein	gnl|CDD|213641	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions].	0.000705277
NC_008599.1|WP_041738340.1|672800_673802_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.64833e-144
NC_008599.1|WP_011731909.1|680199_681645_+|acetyl-CoA-carboxylase-subunit-A	gnl|CDD|169452	PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.	0
NC_008599.1|WP_011731902.1|673798_674098_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.91734e-16
NC_008599.1|WP_002849077.1|681874_682591_+|arginyltransferase	gnl|CDD|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	7.00248e-89
NC_008599.1|WP_011731897.1|668229_669183_+|CRISPR-associated-protein	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.03504e-36
NC_008599.1|WP_011731898.1|669179_669941_+|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.45768e-34
NC_008599.1|WP_011731900.1|672306_672792_+|Dna2/Cas4-domain-containing-protein	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.92088e-58
NC_008599.1|WP_080512716.1|669928_672310_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.44808e-28
NC_008599.1|WP_049752878.1|676924_677566_-|DNA-adenine-methylase	gnl|CDD|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.04325e-23

Protein sequences

>NC_008599.1|WP_011731902.1|673798_674098_+|CRISPR-associated-endonuclease-Cas2
MKNYNYAYVFYDISDKESEAGKRRVTKVFKLCKKYFLHHQKSVFKGEITPANFIKFKSAIEKLIDKNIDVITVLRLIRKDDVDEISIGGLDFVKNEMFL
>NC_008599.1|WP_041738340.1|672800_673802_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MSKLHTRYIFSMGELSRKDNSLAFKNEKGTTYIPIAGIREIYCMNEVSINSKLLDFLAKNGITIHFFNYYGNYSGSFYPKKHLISGRVIISQVEALANRMIVAKSIVKGIALNMHEVLYHYYRHGKTELKPLLDYLKFRVSNMLINANTIPQIMFIEGQIWSKFYDSFELFLDESFSLGKRVKRPPDNPMNAMISFGNSLLYTKTISAIYQTHLEQSISYLHESSDARFSLSLDLSEVFKPIIVFKTVFELVNLKKINIKKHFEKKIDFCLLNESGRKIFVESFEERLNEPFLHSKLNRKISYKTALKLEGYKLIKFICESREFVPFSLKDKR
>NC_008599.1|WP_011731900.1|672306_672792_+|Dna2/Cas4-domain-containing-protein
MKITGTLINYFFHCKRQCYLFYNRINLEDNSEDVNIGRVLHEIKFEDDIKFENIALDKITDEYVIEFKKSDSDETASMWQLLFYLKKLKEIGILRKGLLEFGENKKLPTKRLKVELTDDKELELEQIYSQISELMSLKTPPDPLKSSLKCKKCAYFSYCFI
>NC_008599.1|WP_080512716.1|669928_672310_+|CRISPR-associated-helicase-Cas3'
MFLLGDYLAHTSPHKDPETLQAHCDLAKEYLQKIKNGKNLNNIIKNLANQILDDDVILEFFDDFIVYHDLGKTNPAFQKFKMKNENPKFSKADGETTHSKQSFYMLKDKYKDFILNYKDENIRETVCVFYYLLSNVLNHHGHLKDGFDDKYLNKDSDKLDKKFCNAEKRVNFDIELFIFIKLHFSLLIASDFYATSEYMNDIKIDDLGVFDKDKKEKIYSKFREFYSSLKPRSDIDSLRSEIFKKTSETLYDNLDKNIFYLEAPTGSGKTLTSLNLALNLLNLNSNLNKIFYVFPFNTLISQSKSIFETIFGDEFDISIINSITPPKFSTENEQENSESNYDKTYINRVFYNHPFILTSHVALFKTLFGISKEENYGLFSLANSVIILDEIQSYRSNLWEFMALFFDSFAKHLNIKFIIMSATLPKISNLLKNSDDKWCDLLPNSNYFQNTLFKDMVKADFSLLNIGKNDLFDSIVGKITESKKDKILVEFIKKPSAREFYNFIRFKFDDYDIFELSGDDNKLYQKKVIAKLKGSNTKAILVATQVIEAGVDIDMDIGFKDIATFESEEQFMGRINRSALKPGSLAYFFDYDNASMIYRNDSRIKFSLKDDELKKCLIDKNFIPYYDKLLYELKCENSRVNGGFNSIRENFQDDIGNLNFIQISKNMQLINDDRIRIFLPFKIDVSSFDMSEYGNIEHFMDGDFLDGKKIWEAIICLNEVKEYGKRKIEALSLNSLADIFCFNILSSEAKKLPNVKIEYGYVYIEDYDGLIDEESKLDRTALAKKYKNEDLIL
>NC_008599.1|WP_011731898.1|669179_669941_+|type-I-B-CRISPR-associated-protein-Cas5
MRAVSFKLSGKFAHFKKPDVNEYAYFTYNNIPKPTLLGLLGAIIGLKGYAQKTYKDKKDKKSLFNNENSSNEPEFYERLKHLKICIIPLVKYGRFSKKIQIFNNGVGYASGEDGGNLIVREQWLENPSWQILIEDDGSAEFETVSRYLFDKKAKFIPYLGKNDHFADISEVEKIDLAESKKDRISIKSLFLDDLAEQVDDPDDEISYLFNEFYPISFNELMFYELKKVAFTNQICRAIDGKWYEFKDGTICFF
>NC_008599.1|WP_011731897.1|668229_669183_+|CRISPR-associated-protein
MKLTSRVYGIIGIKSTMANWNADFTGRPKSTGNGDIFASDKALKYPMKKMWESYGKNILFVKSLKQGKDKDGKSKLVPNTLGERYSLLFGDIKEAKSTKEVLGNLFNCIDVKNFGATFPENGYNLSITGAVQIGQGFNKFEDINIEVQNILSPFADSRANEKNKDGEDASQSTLGTKIVTDEAHYFYGFCINPLAYNDYKEILGDDFGYDEDDYAEFKKAARFCATYFNSNSKFGCENEFAMFIETDSDAYLPDLSAYMDFISQGKDRIVNLEKIEKMLESSDVKKVEIYYNPLSLDVETKFDKFDKFDIYSGNKIQ
>NC_008599.1|WP_152791336.1|666818_668246_+|hypothetical-protein
MNKAILPNKKFHSINFLSLFFKLEESEYVSENLKKYFDIFRDFNTSNDAKDKEIISFNSDYIKDENRQSLIANSVVLCQKYFNGIKDFAGQNNFKKCYIKFFINEDLKLYEKESRIYLDLKIYNSNEYNITHNDEILGLSNFNTGMNSKKPFLEHKSRLFKIPYVISQKDALATKMLFDWLGSQNKITVRDFDSIFMSKFNKNSKAVVSDFEYVPVSESNFKFDKLKIKDFMDIKNGEREILSFDDFKQVIDEQLYQKRLFGNLYNDEIRVSKLLSEDMQNLLYQTRHSMIEYFEKFNSNEFYYVIQKYSNDFIKVAMQDGEFGRLNAKKSINLLLSIKETKGEKVDIDEIKNRVISALTDDNITKLNGNEYYFLVGNLAMRLVNKSKGWKKTFALTESYTKARNTKKLKMILFSDFDRYKYDIFIGDEILRKAFLLAQNCEDLVMSNSDQQMVLIGMTAKNIIKKSGEKDEVNE
>NC_008599.1|WP_011731895.1|665849_666566_+|CRISPR-associated-endoribonuclease-Cas6
MKIYQLKVFLKLNQNVDFVNSPEFLSSNLHKSMLGDEALRSIHMQRYLKPYSIGFLYGMKGKKDGFTSGEDMYFYVRSIDESFISKLRICLENSKNLGFNVYASKLEVLDSKRIDCLYTMSPATVVLKEGDKTIPWRRENSDIAALKDALILNLKNKYEYFLDKKIEITDDIIELIEIKTNRAFAFKYKNGKIYAYRYQIHFSGNKTAQEFANIAMILGVGVKNTLGFGFCMRSKNVV
>NC_008599.1|WP_002850371.1|665177_665393_+|hypothetical-protein
MSPAEFGLSEYESMLLGGLNLSAGFEVGFGASYCKCDSLVLKEYCKNCGIDFLWAYSVFKRYANVLNRVED
>NC_008599.1|WP_002849065.1|664683_665148_+|hypothetical-protein
MKTRYPFELKIDDKTYALEFVEINKSSAKELAKEIKKFSDEIEKIEIIRDEIEHTKATIEINKELANSLIGSEKIEILKENKELLKILENKNKALKAAEAKEISIDELAKKRFGFCIAGESANKLKIDLDSLGISYSAVMSAIDEEVARSKEKK
>NC_008599.1|WP_011731905.1|676319_676790_+|hypothetical-protein
MIKKLTDKRLSEITKIPYGTIASWKRSDGYTKDIYLFFKNLDPEFLIENFGAKTPIIPLRDKEVVGAIGISQGTLYGWKNGKGHRKKLYDFIAQFSAKEILDICAKEKDSINDKTLSKITKIPYQTLQGWKKYEDRQVLYKLLKSFTQEELSSFFS
>NC_008599.1|WP_049752878.1|676924_677566_-|DNA-adenine-methylase
MANFYQKEPSKIEVVNDINSDLINLHRIIRNRPASLQTEINSLFKSRELFLDIKNGKLKPKNDIQKAAFYFYLLATSFGAKGDNFAIGNSKSAKNIHRDFFANSKRLKRAFIENMSYEKLINGYDSSDTLFYVDPPYVGAENYYKMVRGFGINEHENLAKILANVKGKFMLSYNDCEMVRSLYKDFKFKELKVNYSLNSKYRSVKNELLIMNF
>NC_008599.1|WP_011731907.1|677607_678390_+|hypothetical-protein
MAETLKEKFKGVLSANTSYFEGVSDHIISQAQNIARVNQSSKYGVKHYKVLARIDSRTSDICRSMNGRIIPASHIEAQSNNIQNAKDINEKKAAAIWRNEPFLGKILPSNFGLPPYHFRCRTELVPVWINEEEIDGVKMKNTSPLSKDEVVKHIDKTGVERVLNKGNYFGENNHSKPLYKRASKGDIVKALNSINTTAKNKDNRYINAFSDNGYFIVFNGNEIVTAYKHEKGNKATFDYFKRRSIYDKKEVIKWKIANLL
>NC_008599.1|WP_011731908.1|678365_678662_+|hypothetical-protein
MENRKLTIGSYGIEWAIKDPNHGDEAQGLGIIAPITSVMGGKIVEIFDILTPYQEDIDEAKEYKEFYEICDFEVLSNGYKFTGTFIDALEYIKANFGK
>NC_008599.1|WP_002850361.1|678702_678909_+|hypothetical-protein
MTIIEAFSKTKTLQNQNRNAVVKIVKKNYSGYDVQIEPVELTVIKNSLEMISQNANSFMANVNAKYGK
>NC_008599.1|WP_002849068.1|679069_679318_-|hypothetical-protein
MAWTRSGHPVSGALVGGGGRTGSRTAKAFAKQVNHPGTKAQPYLEDGLNNYISSSGLAMAKEDLAKDVRNKVLNDIKKALKL
>NC_008599.1|WP_002849070.1|679244_679472_+|hypothetical-protein
MREPVRPPPPTKAPLTGCPDRVHAKAFAFLTLIICGFVPKCTNLTCLSIKRFALNFLWAYSVFKRYANVLNRVED
>NC_008599.1|WP_011731909.1|680199_681645_+|acetyl-CoA-carboxylase-subunit-A
MIHKILIANRGEIAVRIVRACKDLHIKNVAIYTEPDRECLHVKVADEAYQIGKDPIKGYLDSKRIVEVAKACGADAIHPGYGFLSENYEFSKEVEDAGLIFIGPNSDIIRKMGNKNIARFLMKKNGIPVVPGTEKLNSETIEAIKNYAVRIVYPVILKASGGGGGRGIRVVWKEDELESSYESCKREAKAFFNNDEVFMEKYIEKPRHIEFQILGDNYGNLIHLCERDCSIQRRHQKVIEIAPCPTISEDLRKRMGVAAVAAAKAVGYTNAGTIEFLLDDYNNFYFMEMNTRIQVEHGVTEEITGVDLISRQIRIAAGEILDIEQNEVRPQGVSIEARITAENVWKNFAPSPGRITGYFPALGPGVRVDSHMYQDYVIPPFYDSLVAKLIVKGTSYDLAVSKLERALDEFKIEGVRTTLPFLLAISKRRHFRRGFFDTSYIEERLQDILENTQDHHQENKEEVIAAIAAAIKKVKEDRAKE
>NC_008599.1|WP_002849076.1|681651_681888_+|hypothetical-protein
MNDFFDSLKNIKNELVKEQKSQEIKVPKKPKPNPNRDEFKDIFAEPNEIEMPDAKEHRLKDEFLEFIKHSDVKKLERD
>NC_008599.1|WP_002849077.1|681874_682591_+|arginyltransferase
MREIDFCTLDTLCPYLEDRNSRTMYRYVSQCSFDYNSNLVKHGYRRFGSYFSKPICDGCDECKSIRIDAFNFKFTKSHRRIINKNSNTKIVVSKPYISQRHIDLYEKYHKFMHEKRGWEYYNLDFRRYYSVYVEGAGDFGYEIDYFVNDELVCVDLVDIVDDGISSIYCYWDIDFAHLSLGKFSLLNQITIALKNDLRWIYLGFYVKDCASLAYKGEYKPYETLKTYCDIDEKPIWEF

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008599_2	2.13|675264|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR	675264-675300	37	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	79216-79252	0	1.0
NC_008599_2	2.13|675264|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR	675264-675300	37	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	9248-9284	0	1.0
NC_008599_2	2.3|674604|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674604-674639	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	35749-35784	2	0.944
NC_008599_2	2.3|674604|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674604-674639	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	35690-35725	2	0.944
NC_008599_2	2.22|675858|35|NC_008599|CRISPRCasFinder,CRT,PILER-CR	675858-675892	35	NZ_CP013848	Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence	4633-4667	6	0.829
NC_008599_1	1.21|656697|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT	656697-656732	36	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	6189-6224	7	0.806
NC_008599_2	2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674670-674703	34	MN694305	Marine virus AFVG_250M434, complete genome	10832-10865	8	0.765
NC_008599_2	2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674670-674703	34	MN693908	Marine virus AFVG_250M177, complete genome	10829-10862	8	0.765
NC_008599_2	2.23|675923|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR	675923-675958	36	MG945331	UNVERIFIED: Microviridae sp. isolate 2002-1801, complete genome	2472-2507	8	0.778
NC_008599_1	1.14|656236|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT	656236-656271	36	MK448743	Streptococcus phage Javan371, complete genome	12867-12902	9	0.75
NC_008599_2	2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674670-674703	34	NZ_CP021155	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-3, complete sequence	9428-9461	10	0.706
NC_008599_2	2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674670-674703	34	NZ_CP035461	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-3, complete sequence	4426-4459	10	0.706
NC_008599_2	2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR	674670-674703	34	MK693030	Enterococcus phage vB_EfaM_Ef2.1, complete genome	108697-108730	10	0.706
NC_008599_2	2.17|675529|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR	675529-675564	36	NZ_CP034950	Enterococcus faecium strain NM213 plasmid unnamed1, complete sequence	20299-20334	10	0.722
NC_008599_1	1.21|656697|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT	656697-656732	36	KJ018209	Shewanella sp. phage 1/4, complete genome	128607-128642	11	0.694

1. spacer 2.13|675264|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

ggggatatggtaaaatctgcagttaaatctaagttat	CRISPR spacer
ggggatatggtaaaatctgcagttaaatctaagttat	Protospacer
*************************************

2. spacer 2.13|675264|37|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

ggggatatggtaaaatctgcagttaaatctaagttat	CRISPR spacer
ggggatatggtaaaatctgcagttaaatctaagttat	Protospacer
*************************************

3. spacer 2.3|674604|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.944

agagaagcaaggcttaaaaatgttcgcagatggcgg	CRISPR spacer
agaaaagcaaggtttaaaaatgttcgcagatggcgg	Protospacer
***.********.***********************

4. spacer 2.3|674604|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.944

agagaagcaaggcttaaaaatgttcgcagatggcgg	CRISPR spacer
agaaaagcaaggtttaaaaatgttcgcagatggcgg	Protospacer
***.********.***********************

5. spacer 2.22|675858|35|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013848 (Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence) position: , mismatch: 6, identity: 0.829

tctttgctttttgtctttgctat---tttacttttaag	CRISPR spacer
tcttagctttttgtctttgatatttatttattttt---	Protospacer
**** ************** ***   ****.****   

6. spacer 1.21|656697|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 7, identity: 0.806

catcctccttttaatttattacatttaaacaattta	CRISPR spacer
aatcctcctttgaattcattacatttaaaacatatc	Protospacer
 ********** ****.************  ** * 

7. spacer 2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to MN694305 (Marine virus AFVG_250M434, complete genome) position: , mismatch: 8, identity: 0.765

ttttgtcatcagaaccaggaccaggagaacctga	CRISPR spacer
tattagcatcagaaccagcaccagcagaaccacc	Protospacer
* **. ************ ***** ******   

8. spacer 2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to MN693908 (Marine virus AFVG_250M177, complete genome) position: , mismatch: 8, identity: 0.765

ttttgtcatcagaaccaggaccaggagaacctga	CRISPR spacer
tattagcatcagaaccagcaccagcagaaccacc	Protospacer
* **. ************ ***** ******   

9. spacer 2.23|675923|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to MG945331 (UNVERIFIED: Microviridae sp. isolate 2002-1801, complete genome) position: , mismatch: 8, identity: 0.778

tcgaaatacaagctcgcgcaaaatggaatccattct	CRISPR spacer
tcgaaataccagcacgcgcaaaatggttagccttat	Protospacer
********* *** ************    * ** *

10. spacer 1.14|656236|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT matches to MK448743 (Streptococcus phage Javan371, complete genome) position: , mismatch: 9, identity: 0.75

tcaccaa-----aaaaaccaggaattaaataaaaagtaaaa	CRISPR spacer
-----aaggatgaaaaagcaggaattaattaaaaagtacga	Protospacer
     **     ***** ********** ********* .*

11. spacer 2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021155 (Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-3, complete sequence) position: , mismatch: 10, identity: 0.706

ttttgtcatcagaaccaggaccaggagaacctga	CRISPR spacer
atatctcatcagaaccaggagcaggaaaaggaat	Protospacer
 * * *************** *****.**   . 

12. spacer 2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035461 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-3, complete sequence) position: , mismatch: 10, identity: 0.706

ttttgtcatcagaaccaggaccaggagaacctga	CRISPR spacer
atatctcatcagaaccaggagcaggaaaaggaat	Protospacer
 * * *************** *****.**   . 

13. spacer 2.4|674670|34|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to MK693030 (Enterococcus phage vB_EfaM_Ef2.1, complete genome) position: , mismatch: 10, identity: 0.706

ttttgtcatcagaaccaggaccaggagaacctga	CRISPR spacer
ttaccgtatcagaaccagaaccagtagaaccaac	Protospacer
** .  .***********.***** ****** . 

14. spacer 2.17|675529|36|NC_008599|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034950 (Enterococcus faecium strain NM213 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

tctgataaaatgtatttggatcaatacctaaagctc	CRISPR spacer
gcagataatatgtatttgggtcaataccttggacaa	Protospacer
 * ***** **********.********* ...*  

15. spacer 1.21|656697|36|NC_008599|PILER-CR,CRISPRCasFinder,CRT matches to KJ018209 (Shewanella sp. phage 1/4, complete genome) position: , mismatch: 11, identity: 0.694

catcctccttttaatttattacatttaaacaattta	CRISPR spacer
ggctattattttaattcattacatttaaacacttct	Protospacer
 ... *. ********.************** **. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1369937 : 1381187	9	Tupanvirus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_008599|1369937:1381187|DBSCAN-SWA
AATGAAACATATTAAAACAAGCAATAAGAAAGAGTGCGAAATACCTTGCCGTTTTTTAGATAAAGGCAGTGTGTCTATTGTGGTTCCTTGTTACAATGAGGAAGCTTCTATATCCATATTTCAAAACGAAATCATAAAAATATTAACAAATATCAAAGACAAAATAAACTCAAACTTTGAATATGAAATTATTTTTATAGATGATGGAAGTCAAGATAAAACAGCTTTAGAAATAAAAAAATTATGTAATAAATTTAATAATACTCACCTTATTAAATTTTCGCGTAATTTTGGTAAAGAAGCCGCTATTTTAGCAGGTTTTAGAATGGCAAAAAATAGCAGCATAGTCTTAATAGACGTAGATCTACAACATCCTGTATATCTGATAGAAAAAATGTATGAAATTTGGTATAGCAATGAAGCAGATATCATCTATGCTATAAGAAAAGATAGAAAAGGTGAAAGCTTTTTGAAAAGCAGACTAAGTGAAATATTTTATAAAATTTCAAATATAATCTCAGACGTAAAATTAAAGCCGGGGGTAAGCGACTTTAGATTAATGGATAAAAAAGTTGTCGATATCTTAGTAGCAATGAATGAATATCATAGATTTAGCAAAGCCATGTTTGAGTGGGTAGGATTTAAAAAAATAGCGTTAGAATATGATTATGCCCCAAGAATTAACGGTAAAACTAGCTGGAGTTATATGAAGTTATTTAAATATGCCGTAGAAGGTATGATAAGTTTTTCGACTACACCTCTAAAAATATCATTTTGGATAGGATTGATGATAAGTTTTATATCCGGAACTTATGGAATTTTTATCGTTTTTGATACTATCATAAATGGAAATACCGTAAAAGGCTACCCTTCAATGCTTACTATAATACTATTTTTAGGAGGAATACAGCTAATATTTTTAGGAATTATAGGGCAATATATTGCAAGAATTTATGAACAAGTAAAAGATAGACCGCATTATATAGTTGAAGAGGAGATTTAGCACAGTGAATTTAAAACAAACTTTAAAAAAAGAGCTACTATTTGTTATAGCAACTGTTAAAAATTTTTTCAAGTATAACCACTTCTATAAATATTTTATTTTCATTTTTGGGCTATATTTTACAGGATATTTTGCACTAATAGTAAATAATGTTAATTATGGCGATGACTATCATAGAGCTACATATGGAGATTTTGGATTTCAGATATGGAGCAGATTTTCATCAGAGTTTTTATCAAAAATATTTCATATAAGTTTAAATAGAAATGTGGAAATATCTCCTCTTTTACAGATAATCGCAATTGCTATCTTGTCTATCGGATCAATGATTTTAGTAAAAACTATTTTAAAAAAATATAATTTTTGGGGACTTGCTGCTAGCCTACCTTTGGGGCTTAGTCCATTTTTTTTAGAAAATATGAGTTTTAAATTTGATAGTGTGTTTATGGCGATATCATTAGTTTCACCAATCATTCCTTTTCTATTTTTAAAAAATAAAATAGCATTTTTTATAATATCTATTTTGTGTTTAGAATTGACCTTAACCACATATCAAACAGGAAATGCGGTGTATATAATGTTATCTTTATTTATAATATTGAGTTATATATTAGAAGGTAAAGATTATAAGCAGATTATTAAATGTGCTATGTTGCTTATATTGGCATATATTTCATCACTTCTTATATATAAGTTTTTTATTTTAAATGAATCTTCCGGAGAATGGTACGCATCAAAAAGCACATTTGAACTAAATAACCTGATTCCAGGAGTAAGTAAAAATTTAAAAACGGTACTGAAAATATATGAAGATGTTTTTAAACATACTATTTTTGTACCTATATTTGCACTTGGGATAATTGGATTTTTATTTGCTTGTATAAAAGTATCTAAAATATGTAGATTTTGGACTCTTATCGCTAGTTTAGGATTTATAATCTCTGGAATTTTATTATCTTATGGGGCTTATTTGGTATTAGAAAAACAGATTTTTAGTGATAGAACTTTTAATGGTATAGGTATGTTTCTAGCAATTATATTTGTATTTTTATTTAAAATAGATATAAAAATATATAAGTTTTTTAGCAAAACTATATGTTTTATATTAGCTTATTCACTCATAATAGAAGCTACTGCTTGGGCAAATGTATTAAAAGAGCAAACAGAATATGCAAAATACAGAGTTGAGATTATGCTGCATGATTTTTATAAAATGATACCAAAAGATAATAAATTTGGCTTTACCTCTGAAGTAAATAAAAACAATTTTATGTCTCCAATAGCATTAAACACGTCAAAAACATTTCCTATAATAATGAGAAATCACGCTATAGATAATATGCTAGATGCAAATTGGCTGTTCAACTCTTATGGACTTATGGCTCATTATGAACATTGGACACCGATACTCTCAAAAGGCCTATGCGGACAAAAAAATAAAAAGCCAATTGAGATCGTAGAAAATCCGCTCCATAAAATCACAAAATATGATAACAACTGTTTTGTTATAGAGTTTTTATAAATGAAACTATCTAATTCATATTTTTTACGATATTTATGTGTAGGAGTATTAAATACTATTGTTGGCTTTGGGATTATATTTACCCTTATGTATATTGGATATAGCGCGGAAATCTCAAATTTAATAGGCTATATTTGCGGAATTATTTTCTCATATTTTATGAATAAATTTTTTACTTTTAATACAAAAAATAGAAACAAAAAAGAGTTTATAAAATTTATAATAGCGATGCTTATCTCTTATGTATTAAATCTATTAATGCTTAAAATTTGTCTGAGTTTAGGTATAAATGCATATATAGCTCAACTATTTGCAGGAGCCGCATATACTGTAAGCGGCTTTTTAATAAGTAAATTTTGGGTATTTAAACTAAACAGTTAGCTATTTTAGTTTCTTCTCCCACTCTAAAGCTGAGCTGATGATGAGCTCCAAACTCTCGCGAGTCGGTTTCCAACTAGTTTTATTTCTAAGCTTGCTAGCGTCTGATATAAGCATAGCTGGATCTCCTTCGCGGCGTGGGGCATTTAATACTTTAAAATCCACTCCGCCAACTTTTTTAGCCGTTTGAACGACTTCTTTTACGCTAAATCCTCTACCATAGCCCACGTTAAATATATCACTATCATTTGTTTTTAGATATTCAAGTACGGCCAAATGAGCATTTGCAAGATCTTCTATATGGATATAATCTCTTACACAAGTTCCATCTTTTGTAGCGTAATCACTCCCAAAAATACTCATACTTTCTCTTTTTCTAGTAATCGTTTGAGTGGCTACTTTGATAAGATGAGTCGCGTTTGGATAATTTTGACCGATAAGCCCGTCCGTGCTTGCTCCAGCTACGTTAAAATAACGCAAAATGCCAAATTTAAAATCCCTGTTTGCAAGCGCGGCGTCTTTTAAGATCCACTCAGTCATGAGCTTGCTTCTACCGTATGGATTGATCGGATTTTGCTCGCTTGTTTCATCGACTACGCCGCTACTAGGCTCCCCATAAGTAGCAGCAGTCGAGCTAAATATAAACTTACTCACACCGTGTTCAACAGCTAAATTTATTAAATTTGCGGCGTTTGCCGTGTTATTTAGATAATATTTCAGTGGTTTTACCATACTTTCAAACACTTCTATATATGCTGCAAAATGTATGATTGCTTCAAAATTACGCCCTCTAAAAATCTCCCTAAGGCTAGAAGTGTCTTCTAAAGAGCATTTTATAAACTCGAATTTTCCAACTTTTTCAAGCGTTACTAACGCCTCTTTACTTCCTGTGTAGAAATTATCTATGACAGTTATGTTATGCCCACCCTCTTCTAACAGAGATTTTAAAACGTGAGAGCCGATATATCCAGCTCCTCCGGTTATCAAGATATTCATTTTTCGCCTTCGTTTTACTTTAAATCTTAGTGATTATTATAGCTAGTTTAGACTTAAATAGCCTAAAATAATTCACGTTTTAAAATTTTGCTTGTGGCGTTTTCTAGCGTTTTTAACTCATTATTTAAATTTGAAATTTCACCCTCACAAAACTCAATGGCTTTAACGATTTTTTCTTGAGCCTCAAGCGGCGGAAGTGATAAAGTTAAATTAGAAATTCTTTCAATTGATGCTCTATTTTGTCTAGAAAATCCAAATTTAGCACCAACTTCAAAAAGAGCAAATTCTAAAATTTTTGCTTTATGTGATTTACTTCTTAAAACTCCGCAATGATCAGTCGGATAAAAAGGTTCATTTGCTTTTACAAATCCTGTCATCCAATCTCCATCAATTCCCCATAAAACACTATCAAGACTAAAATCTTTTATTAAATCTTTATTTATTTTTCCAAAAGGTTCTTTAACATTTGCACTAAATACATTTATGCCATCTTGCGTTAAATCTTTATCTAAAACACGCTTACCGATTTTTAATATAAAATCTTTATTTGTTAATTTTACGCTTTCCCACTCGCTTAAGCCATAATTTTGCGGTGATGGTAAATCGTTTAAAATTTGAGCTAAATTTTGCTCATACCCCCCCCCTATCTCTAAACTAGCATCGGTGATTACACAACTTTTAATTAAAATTTCTTTAATCAAGCTTTTATACTCTTCAATACTCATTCTAATAGTTTTAAATTTCTCTTCCACCTCTTCGCACTCTTTAACGATTTTTTCTTGAGCCTCAAGCGGCGGAAGCGGAATTTTAATATTTGAAAATTTACTTTTATTTATAATTGGAACTGTTGTATTGTGTGTCTGCTGAATTAATAATTGTTTAAAAAAATTAGTATCAAACAAATAAAATAAAAATTCACTTATATAATTATTATTTGGCAATAATGCATTAATTTGCTGATTAAAAATTCCACTTTTTTCAATCATCCCAACTCTTCCAATTGTTCCAATGCAACTAACTAAGATAGATTTTTTGGGTAAAGCTCTCTGACTTTCATATCCAAGTTTTGAGACCATAACTTCAGATGAATTAACATTTCTACCATTAATTAAATCCGCTGGTCTATAAAAAGGAAAATCAGAACCATAAAATTCTTTTTTTTGTGTGCTTGGTGTTGAACCTGTTAAAATTTCGCAAATTTCTCCAAGTTTTACAAGCTTAAATTTAGACCCTTCAAAAGGATTTAAATTTACGCCATTTTTGCTACTTGCAATATTTAAATTTATGGCTTTATTAAATTTCGCACTCGTAAAATCAAGGCATTTTAACAGCGGCGTGGTAAAGGCAAATTCGCTTAAATTCGCAGGAATTTGTAAATTTTGGCTAAAACTAACATATGGATCTTTTAATTTTTGTTTTTCAAAATCATCATTTAAGATAAAAGCGCGTCTTACTAAAAAGCAAAGTTTTTCAGGATTGTCTAAATTTTCACGCTCGAAAAGTGGCGAAAAATAGGGCGTTTGTAGCTCTTTTAGCCCTTCGCTTCCTTTGCGATTGCTCCACTCATAGCCTAAAAATTTGCTTTGAGCTTTGTTTTCGCTCGGGCTTTTTATGATGAGAGTGTTTGTATATTTTACTAAGCTAAAAAAGAGAATTTTCTCTTTTTCTAAATTTAGACAAAAGTTCAAAAATTCTTTTTGCTCTAAAGCTTCTTTTTCATTGCTATCTTTATAGCGTTTAGATTTTTTTAAATTTGATAGCGCGGATGAGTTTTTAAATTCGTTTAAATACTCTTTAAAAATATCGTGGCTATAAATTTCTCCATAACCACCGCTTAAAAACTCTCTAAACTCATCTTTTTTATAACCCATAAATTCGCAATACGCTAGCAAGCCCTCAAGCAAATAAAGATTAGAAAAATCTAGCGAGCTTTCTATATTTTCTTTTAAGTTTTCATAACTTTGAGAATTAAAGCCATTTGCATAAGTTTGCTTTTTACTTAAAAATAAAATTACGGTATTTGTGCCGGTAGCGCCAAAGGTATTTGAACCAAACTCGGTTATAGAGATGATGTCAAAATTTCTTAAAATTATCTCTCTAGTTTTTTCATAAACGCCGTCTTTATTTAAAATGCTTGAAGGCAAGATAATAGCAACCTTTGAATTGCTTTTTAAAAGTCTGTTTGCACGTTCAATAAAAAAACACTCGATAGCATTTGAACTTTCTAAATTTATATAGTTAAAAAGTTCGTATTTTTCGCATTCGTTTTTTGATAAAGTCTGCAAAAAACCTTTTACACTATAAGGTGGATTTGCTATAAGCAAGTCAAAATCACGCTCCTTAAATTTGCTCTCATCAAGAGCGTCTGCATAAGAAATTTTAACACCACTTTGCCCATACATAGCAGCACTTACTTTTGCGACTTTACTTAGGCGATATTCTTTTTCTATGCCATAAATGTTTGAGTTTATAGCTTCAGAATCATTACTTATACTTTTAGCTATATTTGCATACGTATTTAGAAAATGTCCCGCACCACAAGCATAGTCAATCACCTTTGGAATACCATTATCAAAAAGCATTTTAAGCGGTAAAGAATGCACTATAAACTCGCAAATTTGAATAGGCGTAAAAAACTGCCCCTCATCTTGCTTCATACCTTTTTGCAAAAATAACTCAAAAAGATTGCCTAAAAGCTGGTTGGTTTTATTTTGAGTTAATCTTAGGTTTTCAAAAAGCTTAATAATGGCTTTTAAAACTTGTGCGTTTTGCTCAAAAAGAGTTTTGTTATGTACTTCAATAAAGCTAAAATCGCTATGAGAGTAAAATTTTAGCATACGGATAAATTCGTTTATCTGGTTTTTTAGTGTTTGAGTTTTGATTTTGTTTCGTTTAAAGTCGCTAAACTGCTCATCTATTTGTTCATCGCTTACATATGTGATTTCTTCGTTTAAATACTCTTTCATAGCATCTTTATAAAGCTTCATCAAACGCTCTTGCATCGCTTCAAAGCTGTCAGCCGTAACGCCACGGTAACAAAATTGTAAGTTTTCTTTATTGTGCGTTTCATCGTAAATTTTACATAAAAACAGATTTACAAGTTTATCAAAGGCGTTTTCCTTACCGCTTATGTTGTATTTACGCAAAATCGTGGCAAAATCGTGATATTTGCCATCTTCATAGCTTTTGCCATCTTCGTTTTGGCTAGTAAGCTCTACTAAATCATCAAAACAAAGTGCGCTTTTGCCAACTTCATAAGGATTTATATTTATCTCAAAAATTCCAACTTGTGAGTAATCGCCTTTGTAAATTTCACTCCAAACTTTAAAAATCTCTTCGGCACTTGTGGCTGTTTGGTAACTTTTGGCAAAGCCTTGACTTTGTAAGTAGATTTCATTGTCGTTAAAATTTAAAATATAATTTTCAAATTTAAGCTCATTGTCTTTAAAATCGCTTGTATAAAGTGCTAGAAACTTTGCACTACGCTCTTGTTGATGATAGCTGATTAACTGGCTAGGCTCATTTTGCATTCTATTCCACTCTTTGCTAAATTCACTTCCGGCGGTTTTACACTCAATTATTAAATATGGCAAATTGCTTTCATCTTTTACTAAAATATCAGCTTTGCCGCTTTTGGCATCTCGCCCAAGCTGCCAACGCGGTTCAAGCTCTAAATTTGCAGGCTTATAGCCTTTTTCAAGCAGACGATTTACGCACTCTAAAACGACTAAATTTTCAGTATGAGAAAAGTTGCAAGTAGTCTCATCGCCTTTTTTTATCTCTAGTGGATAGATTATTTTTAAATTTTTAAAATCTACTTTTATGACTGCGTCGTTTGCGTAAGTTTTGCTAAAAATCTCGCCGTTTTGTTTAAATTCTAAAAGTTTTAGTACTTGGGCTAAATTCTCTTTTGTTACCATTTTTTACCTTATTATTTTAACTTCACATATAAGTTAAGTAGGCATTGAGCCAAAGATGAGATTTTTATCTTTTTAAACTCACCAATCCCTCTTCTTGCTCTCCAGCTTTTCATCCATATATTCCCAGCCTTTTATACACCACTCAAGCTCAGCTGAATCTTTAGAATATCTATCAGTGCATTCCCATTTTCCTTGCCCTAATTGTCTATAAATTGAGCCTTCTCTATGATATTTTCTCTCAAAAGCGTTACTCGCTTCGTTTATAGGCCATGCGCCGGCGCTTATGACAAATACTACAGCTAAAAAACATACTTTTTTCATATTTTATCCTTTATTTTGTTAAATTATTATCGCTTTTAACACGTAAAAATACGGGAAATCTAGGCTTAGCGTATTTAGTTAAATTTTGATATTTATAAGTAATGATAGTGCCGACTTTTGGCGGATTTGATCTTTGCTCATCACTAAAACCAGAACCTATCTTAAACTCTATGTTACTAAAAATATCAACACAAATCAGCGAACCTAAAAGTCCTTCAAATTTACCTTTACCGTTTTGCAGTTTGACGACTTTACACTCACTATCTTTAAACTTTTTGAGCTTTAAAATTTCGCCGCTTCTACCATTTTTATAAGGTGCGTTTTCATTTCTTACGACTATGCCCTCGCCACCACCGCTAACGACCTCATCTAAAAACGCAAAAGCGTCTTCGTTTGAGTCTATTTTTATCTGCTCTATTACCCGTATAAACTCATTTGAATTTTGACTTAAAAACTCACGCAGCACTTCTAGTCTATCGCGCAAATTTCCCTTAGCGTTTGGCACATCAAATATCATAAATTTGATATTTTCCCAACCTTTATCATCAAAAGAACTAATCACGGAGCCGATAAACTCAAACTCGCCTCGTCCGCTCCAAAGCTCACCGTCTATAGCGAAATTCGGAAAATCTTTTAGCCACCATTTTGGAGCTTTGATGATCTTAGCATTTCTGCTTTTCAAACTCTTGCCATCCCATATAGCTCTCACGCCATCATACTTTTCGCTCATTAACCAACCGCTTAAATTTTCATCATTATACTCTTTTAATAGCATAACTTCGGCTTTTAAAATTAAAAAAGCGATTAATAATAGAGCTAAAAACTTCAAATTTTTACTTTATAATAGTCCATATACCACTGCACGAATCTTGCAACTCCATCATTTACGCTAGTATTTGGTTTATAGTTAAAATCCTCTACTAGATCGCTCACATCGGCGTAAGTCGAAGGAACATCACCTGCTTGAAGCGGCATAAGATTTTTTTTAATTTCACGTCCTAGTTTTATCTCGATCGCCTTTATATAGTCCATTAGCTCGACTGGAGAGTTATTTCCGATATTATAAATTTTATAAGGCGCGTTTGAAGTAGCTGGATCAGGATGGCTTGCATCCCACGCTAAATTCGCAATAGCCGGGTTATCCACGCATTTCATTACGCCTTTTACGATATCAGCTACGTAAGTGAAGTCTCTTTTCATCTTTCCATAGTTATAAACATCGATAGCTTTGCCCTCTAAGGCAGCTTTGGTAAATAAAAACAGAGCCATATCAGGACGTCCCCACTCGCCATAAACGGTAAAAAATCTTAGTCCGGTCGTGCTAAGTCCAAAAAGATGGCTATAAGTGTGCGCCATAAGTTCGTTTGATTTCTTGCTCGCGGCGTACAAACTGATGGGATGATTTACACTCTCGTGAGTGGAAAACGGCATTTTTTCATTTAGTCCATAAACCGAACTTGAGCTTGCATATACGAGGTTTTTCACACCATAATTACGACAACATTCAAGAATATTTGTAAAACCTAAAATATTGCTATTTATATAGGCGTGCGGATTGATGAGAGAGTAGCGAACTCCTGCTTGCGCGGCTAAATTTACTATGCAGTCAAACGAGCCGTTTTCAAAAAGCTTTTGCATAGTTTTAAGATCGCTTAAATCGGCTTTTATGAAGCTTAAATTTGGATAAATACTGGATCTAACTGCTATGTTTTCTTCTATATTTTCACGTTTTATACCAAGCTCGTTTAGCCTTGCGTATTTTAAATTTATATCGTAATAATCATTTATACAGTCAAATCCGACCACTTCATCGCCACGCTTTGCAAGCTCACGGCTTAGATGAAATCCTATAAATCCGGCTGTTCCAGTAACTAAAATTTTCATAAAATGCCTTTAAATTCGTTTGATTTTATAAGATAAACATCTGCCGAAGTCTATTTTAGCGAACTCTTTGTGTGCCACAGCTAAGATCACGCAGTCGTGTCCGCTTAAATTTAAACTCTCTAAAAGCTCTACGCCGTACTCTTTTTTCACATCGTTTGCGTCCGCCCAAGGATCATAAACATCTACGTTACAACCAAACTCTTTGAGCTCTTTTATCACGTCAATAACTCTTGAATTGCGGATATCGGGGCAGTTTTCTTTAAAAGTGATTCCAAGCACTAAAACCTTAGCACCATTTACTTTTAATCCGTTTTTTATCATCATTTTAACAGACTGATTTGCATGGTAAATTCCCATATTATCATTTATTCTTCGTCCTGCTAAAATGATTTCTGGGTGATAGCCGATCTCTTCGGCTTTATGCGTAAGATAGTATGGATCTACACCGATGCAGTGGCCTCCCACGAGTCCTGGGCGGAAATTTAAAAAGTTCCACTTAGTCGCGGCCGCGTCAAGCACTTCGTTGGTATCTATCTTCATCTTGTCAAATATCATCAATAGCTCATTTACAAAGGCAATATTTATGTCGCGCTGCGTATTTTCTATGACTTTTGCGGCTTCGGCTACTTTTATACTACTAGCTTTATAAACTCCTGCTTTAATGATCTTGCTATAAACGTCTTCTACTGTTTTAAGGGCTGCAGAACTACTTGCGGAGATGATTTTTTTGATTTTCGTGACCGTGTGCTCTTTATCACCCGGATTTATACGCTCAGGGCTGTATCCGCACTCAAAATCCACACCGAATTTCAGCCCGCTAGTTTCAAGCACAGGCACGCATTCATCTTCTGTGACACCCGGATAAACGGTACTTTCATACACTACTATATCGCCCTTTTTAAGCACTTTGGCTAAACTCGCGCTTGATTTATAAAGCGGAGTAAGATCAGGACGATTATTTTTATCGATCGGAGTTGGAACCGTAACTATGTAAAAGTTGCACTCTTTTATATCGTCCAAATTTACGCTAAATTTCATACCGTTTTTTAGTACTTTAGCCATCTGTTCTTCATCTAATTCAAGAGTTCTATCGATACCGTTTTTTAGCTCGTTTATTCTTTTTTCATTAAGGTCAAATCCTACAACGCTAAAAGCGTCGCTAAATGCCGCAGCTAAAGGCATTCCGACGTATCCAAGACCGATAATCCCTATTTTTATATCTCTCAT

Protein sequences of DBSCAN-SWA_1

>NC_008599|1369937:1381187|1369937_1370939_+|WP_002850239.1|DBSCAN-SWA
MKHIKTSNKKECEIPCRFLDKGSVSIVVPCYNEEASISIFQNEIIKILTNIKDKINSNFEYEIIFIDDGSQDKTALEIKKLCNKFNNTHLIKFSRNFGKEAAILAGFRMAKNSSIVLIDVDLQHPVYLIEKMYEIWYSNEADIIYAIRKDRKGESFLKSRLSEIFYKISNIISDVKLKPGVSDFRLMDKKVVDILVAMNEYHRFSKAMFEWVGFKKIALEYDYAPRINGKTSWSYMKLFKYAVEGMISFSTTPLKISFWIGLMISFISGTYGIFIVFDTIINGNTVKGYPSMLTIILFLGGIQLIFLGIIGQYIARIYEQVKDRPHYIVEEEI
>NC_008599|1369937:1381187|1373897_1377755_-|WP_011732186.1|DBSCAN-SWA
MVTKENLAQVLKLLEFKQNGEIFSKTYANDAVIKVDFKNLKIIYPLEIKKGDETTCNFSHTENLVVLECVNRLLEKGYKPANLELEPRWQLGRDAKSGKADILVKDESNLPYLIIECKTAGSEFSKEWNRMQNEPSQLISYHQQERSAKFLALYTSDFKDNELKFENYILNFNDNEIYLQSQGFAKSYQTATSAEEIFKVWSEIYKGDYSQVGIFEININPYEVGKSALCFDDLVELTSQNEDGKSYEDGKYHDFATILRKYNISGKENAFDKLVNLFLCKIYDETHNKENLQFCYRGVTADSFEAMQERLMKLYKDAMKEYLNEEITYVSDEQIDEQFSDFKRNKIKTQTLKNQINEFIRMLKFYSHSDFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLTQNKTNQLLGNLFELFLQKGMKQDEGQFFTPIQICEFIVHSLPLKMLFDNGIPKVIDYACGAGHFLNTYANIAKSISNDSEAINSNIYGIEKEYRLSKVAKVSAAMYGQSGVKISYADALDESKFKERDFDLLIANPPYSVKGFLQTLSKNECEKYELFNYINLESSNAIECFFIERANRLLKSNSKVAIILPSSILNKDGVYEKTREIILRNFDIISITEFGSNTFGATGTNTVILFLSKKQTYANGFNSQSYENLKENIESSLDFSNLYLLEGLLAYCEFMGYKKDEFREFLSGGYGEIYSHDIFKEYLNEFKNSSALSNLKKSKRYKDSNEKEALEQKEFLNFCLNLEKEKILFFSLVKYTNTLIIKSPSENKAQSKFLGYEWSNRKGSEGLKELQTPYFSPLFERENLDNPEKLCFLVRRAFILNDDFEKQKLKDPYVSFSQNLQIPANLSEFAFTTPLLKCLDFTSAKFNKAINLNIASSKNGVNLNPFEGSKFKLVKLGEICEILTGSTPSTQKKEFYGSDFPFYRPADLINGRNVNSSEVMVSKLGYESQRALPKKSILVSCIGTIGRVGMIEKSGIFNQQINALLPNNNYISEFLFYLFDTNFFKQLLIQQTHNTTVPIINKSKFSNIKIPLPPLEAQEKIVKECEEVEEKFKTIRMSIEEYKSLIKEILIKSCVITDASLEIGGGYEQNLAQILNDLPSPQNYGLSEWESVKLTNKDFILKIGKRVLDKDLTQDGINVFSANVKEPFGKINKDLIKDFSLDSVLWGIDGDWMTGFVKANEPFYPTDHCGVLRSKSHKAKILEFALFEVGAKFGFSRQNRASIERISNLTLSLPPLEAQEKIVKAIEFCEGEISNLNNELKTLENATSKILKRELF
>NC_008599|1369937:1381187|1372842_1373835_-|WP_002850245.1|DBSCAN-SWA
MNILITGGAGYIGSHVLKSLLEEGGHNITVIDNFYTGSKEALVTLEKVGKFEFIKCSLEDTSSLREIFRGRNFEAIIHFAAYIEVFESMVKPLKYYLNNTANAANLINLAVEHGVSKFIFSSTAATYGEPSSGVVDETSEQNPINPYGRSKLMTEWILKDAALANRDFKFGILRYFNVAGASTDGLIGQNYPNATHLIKVATQTITRKRESMSIFGSDYATKDGTCVRDYIHIEDLANAHLAVLEYLKTNDSDIFNVGYGRGFSVKEVVQTAKKVGGVDFKVLNAPRREGDPAMLISDASKLRNKTSWKPTRESLELIISSALEWEKKLK
>NC_008599|1369937:1381187|1377833_1378076_-|WP_002850252.1|DBSCAN-SWA
MKKVCFLAVVFVISAGAWPINEASNAFERKYHREGSIYRQLGQGKWECTDRYSKDSAELEWCIKGWEYMDEKLESKKRDW
>NC_008599|1369937:1381187|1379969_1381187_-|WP_011732189.1|DBSCAN-SWA
MRDIKIGIIGLGYVGMPLAAAFSDAFSVVGFDLNEKRINELKNGIDRTLELDEEQMAKVLKNGMKFSVNLDDIKECNFYIVTVPTPIDKNNRPDLTPLYKSSASLAKVLKKGDIVVYESTVYPGVTEDECVPVLETSGLKFGVDFECGYSPERINPGDKEHTVTKIKKIISASSSAALKTVEDVYSKIIKAGVYKASSIKVAEAAKVIENTQRDINIAFVNELLMIFDKMKIDTNEVLDAAATKWNFLNFRPGLVGGHCIGVDPYYLTHKAEEIGYHPEIILAGRRINDNMGIYHANQSVKMMIKNGLKVNGAKVLVLGITFKENCPDIRNSRVIDVIKELKEFGCNVDVYDPWADANDVKKEYGVELLESLNLSGHDCVILAVAHKEFAKIDFGRCLSYKIKRI
>NC_008599|1369937:1381187|1378901_1379960_-|WP_011732188.1|DBSCAN-SWA
MKILVTGTAGFIGFHLSRELAKRGDEVVGFDCINDYYDINLKYARLNELGIKRENIEENIAVRSSIYPNLSFIKADLSDLKTMQKLFENGSFDCIVNLAAQAGVRYSLINPHAYINSNILGFTNILECCRNYGVKNLVYASSSSVYGLNEKMPFSTHESVNHPISLYAASKKSNELMAHTYSHLFGLSTTGLRFFTVYGEWGRPDMALFLFTKAALEGKAIDVYNYGKMKRDFTYVADIVKGVMKCVDNPAIANLAWDASHPDPATSNAPYKIYNIGNNSPVELMDYIKAIEIKLGREIKKNLMPLQAGDVPSTYADVSDLVEDFNYKPNTSVNDGVARFVQWYMDYYKVKI
>NC_008599|1369937:1381187|1370922_1372461_+|WP_116967913.1|DBSCAN-SWA
MKRRFSTVNLKQTLKKELLFVIATVKNFFKYNHFYKYFIFIFGLYFTGYFALIVNNVNYGDDYHRATYGDFGFQIWSRFSSEFLSKIFHISLNRNVEISPLLQIIAIAILSIGSMILVKTILKKYNFWGLAASLPLGLSPFFLENMSFKFDSVFMAISLVSPIIPFLFLKNKIAFFIISILCLELTLTTYQTGNAVYIMLSLFIILSYILEGKDYKQIIKCAMLLILAYISSLLIYKFFILNESSGEWYASKSTFELNNLIPGVSKNLKTVLKIYEDVFKHTIFVPIFALGIIGFLFACIKVSKICRFWTLIASLGFIISGILLSYGAYLVLEKQIFSDRTFNGIGMFLAIIFVFLFKIDIKIYKFFSKTICFILAYSLIIEATAWANVLKEQTEYAKYRVEIMLHDFYKMIPKDNKFGFTSEVNKNNFMSPIALNTSKTFPIIMRNHAIDNMLDANWLFNSYGLMAHYEHWTPILSKGLCGQKNKKPIEIVENPLHKITKYDNNCFVIEFL
>NC_008599|1369937:1381187|1378086_1378851_-|WP_002850254.1|DBSCAN-SWA
MLLKEYNDENLSGWLMSEKYDGVRAIWDGKSLKSRNAKIIKAPKWWLKDFPNFAIDGELWSGRGEFEFIGSVISSFDDKGWENIKFMIFDVPNAKGNLRDRLEVLREFLSQNSNEFIRVIEQIKIDSNEDAFAFLDEVVSGGGEGIVVRNENAPYKNGRSGEILKLKKFKDSECKVVKLQNGKGKFEGLLGSLICVDIFSNIEFKIGSGFSDEQRSNPPKVGTIITYKYQNLTKYAKPRFPVFLRVKSDNNLTK
>NC_008599|1369937:1381187|1372461_1372842_+|WP_041738394.1|DBSCAN-SWA
MKLSNSYFLRYLCVGVLNTIVGFGIIFTLMYIGYSAEISNLIGYICGIIFSYFMNKFFTFNTKNRNKKEFIKFIIAMLISYVLNLLMLKICLSLGINAYIAQLFAGAAYTVSGFLISKFWVFKLNS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002850239.1|1369937_1370939_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	4.8e-61	41.5
WP_116967913.1|1370922_1372461_+	hypothetical protein	NA	NA	NA	NA
WP_041738394.1|1372461_1372842_+	GtrA family protein	NA	NA	NA	NA
WP_002850245.1|1372842_1373835_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.6e-56	41.1
WP_011732186.1|1373897_1377755_-	N-6 DNA methylase	A0A1V0SLK8	Klosneuvirus	1.1e-15	21.7
WP_002850252.1|1377833_1378076_-	hypothetical protein	NA	NA	NA	NA
WP_002850254.1|1378086_1378851_-	DNA ligase	F2Y2Y2	Organic_Lake_phycodnavirus	1.0e-31	34.1
WP_011732188.1|1378901_1379960_-	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	7.2e-31	29.1
WP_011732189.1|1379969_1381187_-	nucleotide sugar dehydrogenase	M1HWZ1	Paramecium_bursaria_Chlorella_virus	1.3e-28	28.9