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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_008639 Chlorobium phaeobacteroides DSM 266, complete sequence 7 crisprs csa3,cas3,cas2,cas1,cas4,cas7,cas8c,cas5,cas3HD,WYL,RT,DEDDh,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15 1 17 11 0

Results visualization

1. NC_008639
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_1 286609-286778 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_2 1622087-1622714 TypeI I-C
9 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas3HD

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_3 1625359-1633049 TypeI I-C
115 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas3HD,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_4 2377889-2379138 TypeIII NA
16 spacers
csx15,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas6,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_5 2383057-2384197 TypeIII NA
15 spacers
cas2,cas1,csx15,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_6 2390660-2392257 TypeIII NA
20 spacers
cas2,cas1,csx15,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008639_7 2512615-2512860 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_008639_6 6.14|2391708|44|NC_008639|CRISPRCasFinder,CRT,PILER-CR 2391708-2391751 44 NC_008639.1 2302634-2302677 0 1.0

1. spacer 6.14|2391708|44|NC_008639|CRISPRCasFinder,CRT,PILER-CR matches to position: 2302634-2302677, mismatch: 0, identity: 1.0

ccgttatgtgctatggcaaggctgccggaacgataggttaaaga	CRISPR spacer
ccgttatgtgctatggcaaggctgccggaacgataggttaaaga	Protospacer
********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 462827-462860 7 0.794
NC_008639_3 3.24|1626923|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1626923-1626956 34 KU878088 Bacillus phage AR9, complete genome 153341-153374 7 0.794
NC_008639_7 7.4|2512777|30|NC_008639|CRT 2512777-2512806 30 NZ_CP019037 Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence 443932-443961 7 0.767
NC_008639_7 7.4|2512777|30|NC_008639|CRT 2512777-2512806 30 NC_019789 Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence 6880-6909 7 0.767
NC_008639_3 3.49|1628582|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1628582-1628614 33 AP013368 Uncultured Mediterranean phage uvMED DNA, complete genome, group G11, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C42 19319-19351 8 0.758
NC_008639_4 4.18|2378016|32|NC_008639|PILER-CR 2378016-2378047 32 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 805991-806022 8 0.75
NC_008639_7 7.4|2512777|30|NC_008639|CRT 2512777-2512806 30 MK388859 Klebsiella phage ST405-OXA48phi1.1, complete genome 19080-19109 8 0.733
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 AP014684 Pseudomonas phage PS-1 DNA, complete sequence 20476-20509 9 0.735
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 NC_047955 Pseudomonas phage Nerthus, complete genome 25303-25336 9 0.735
NC_008639_3 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627325-1627358 34 MT460514 Vibrio phage AG74, complete genome 20713-20746 9 0.735
NC_008639_3 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627325-1627358 34 MK796244 Vibrio phage Achelous, complete genome 20519-20552 9 0.735
NC_008639_3 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627325-1627358 34 MN966731 Vibrio phage Chazly21, complete genome 21195-21228 9 0.735
NC_008639_3 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627325-1627358 34 MK907780 Vibrio phage Pontus, complete genome 22149-22182 9 0.735
NC_008639_3 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627325-1627358 34 MK895508 Vibrio phage Brizo, complete genome 17172-17205 9 0.735
NC_008639_3 3.82|1630785|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1630785-1630818 34 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 227229-227262 9 0.735
NC_008639_3 3.111|1632713|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1632713-1632746 34 NZ_CP049243 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed2, complete sequence 91642-91675 9 0.735
NC_008639_2 2.7|1622518|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1622518-1622551 34 MH616983 Microviridae sp. isolate ctje725, complete genome 3122-3155 10 0.706
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 527087-527120 10 0.706
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 MT152150 Pseudomonas phage 8P, complete genome 31080-31113 10 0.706
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 JF974309 Rhodobacter phage RcNL1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces 36892-36925 10 0.706
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 NZ_CP013454 Burkholderia vietnamiensis strain MSMB608WGS plasmid pMSMB608, complete sequence 114882-114915 10 0.706
NC_008639_3 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625525-1625558 34 NC_016165 Rhodobacter phage RcapMu, complete genome 32466-32499 10 0.706
NC_008639_3 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625591-1625624 34 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 1705706-1705739 10 0.706
NC_008639_3 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625591-1625624 34 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 511725-511758 10 0.706
NC_008639_3 3.40|1627985|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1627985-1628018 34 NZ_CP044049 Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence 165041-165074 10 0.706
NC_008639_3 3.76|1630383|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1630383-1630416 34 NC_011961 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence 42351-42384 10 0.706
NC_008639_3 3.95|1631652|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1631652-1631684 33 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 232047-232079 10 0.697
NC_008639_3 3.95|1631652|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1631652-1631684 33 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 160372-160404 10 0.697
NC_008639_3 3.112|1632779|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1632779-1632812 34 NZ_CP028969 Aminobacter sp. MSH1 plasmid pUSP1, complete sequence 245605-245638 10 0.706
NC_008639_3 3.112|1632779|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1632779-1632812 34 NZ_CP026266 Aminobacter sp. MSH1 plasmid pAM01, complete sequence 242882-242915 10 0.706
NC_008639_3 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT 1625591-1625624 34 NZ_CP019603 Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence 585022-585055 11 0.676
NC_008639_3 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1629984-1630018 35 NC_012521 Rhodococcus opacus B4 plasmid pROB02, complete sequence 56212-56246 11 0.686
NC_008639_3 3.78|1630516|36|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1630516-1630551 36 NZ_CP017077 Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence 333274-333309 11 0.694
NC_008639_3 3.82|1630785|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1630785-1630818 34 KY653116 Staphylococcus phage IME1318_01, complete genome 31716-31749 11 0.676
NC_008639_3 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1631585-1631619 35 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1145312-1145346 11 0.686
NC_008639_3 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1631585-1631619 35 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1522660-1522694 11 0.686
NC_008639_3 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1631585-1631619 35 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1811090-1811124 11 0.686
NC_008639_3 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1629984-1630018 35 NZ_CP046574 Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence 81413-81447 12 0.657
NC_008639_3 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder 1629984-1630018 35 NC_008271 Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence 262379-262413 12 0.657

1. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

--aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
tcgagatcaa--cgacgacatctacggcgacggtct	Protospacer
  .**..***  **** ***** *************

2. spacer 3.24|1626923|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 7, identity: 0.794

aaatcaagatagagtattatgagtacctttacgc	CRISPR spacer
cattagagatagagtattatgaagacctttaccc	Protospacer
 * * .****************. ******** *

3. spacer 7.4|2512777|30|NC_008639|CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tttcagaccggatggcaggcctgacggcag	CRISPR spacer
tggtcgaccggatggcgggcatgacggcaa	Protospacer
*  . ***********.*** ********.

4. spacer 7.4|2512777|30|NC_008639|CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 7, identity: 0.767

tttcagaccggatggcaggcctgacggcag	CRISPR spacer
cgtcggtacggatggcagggctgacggcaa	Protospacer
. **.*  *********** *********.

5. spacer 3.49|1628582|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to AP013368 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G11, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C42) position: , mismatch: 8, identity: 0.758

ttaattagtggatgagacaatgacaacaaaaca	CRISPR spacer
ttgttgggtggatgagacaattaaaacaaaaac	Protospacer
**. * .************** * *******  

6. spacer 4.18|2378016|32|NC_008639|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.75

-tatcaagttttcgtaaacggtatgatggagct	CRISPR spacer
atagc-agttttcggatacggtatgatgggtaa	Protospacer
 ** * ******** * ************.   

7. spacer 7.4|2512777|30|NC_008639|CRT matches to MK388859 (Klebsiella phage ST405-OXA48phi1.1, complete genome) position: , mismatch: 8, identity: 0.733

tttcagaccggatggcaggcctgacggcag	CRISPR spacer
gactgcacgggatggcaggcctgacggcgg	Protospacer
  ... ** *******************.*

8. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 9, identity: 0.735

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
agaaccagatcgaccacatcgatggcgaccgctc	Protospacer
*...***.**************.****** *...

9. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NC_047955 (Pseudomonas phage Nerthus, complete genome) position: , mismatch: 9, identity: 0.735

---aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
acaagaaccg---cgaccacatcgacatcgacggtct	Protospacer
   *...**.   *************. *********

10. spacer 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to MT460514 (Vibrio phage AG74, complete genome) position: , mismatch: 9, identity: 0.735

cattatcgtaatccattgttgacagcaaagtgtt	CRISPR spacer
tgtgtgcgttatccattgttgacagcatagtgaa	Protospacer
..*   *** ***************** ****  

11. spacer 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to MK796244 (Vibrio phage Achelous, complete genome) position: , mismatch: 9, identity: 0.735

cattatcgtaatccattgttgacagcaaagtgtt	CRISPR spacer
tgtgtgcgttatccattgttgacagcatagtgaa	Protospacer
..*   *** ***************** ****  

12. spacer 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to MN966731 (Vibrio phage Chazly21, complete genome) position: , mismatch: 9, identity: 0.735

cattatcgtaatccattgttgacagcaaagtgtt	CRISPR spacer
tgtgtgcgttatccattgttgacagcatagtgaa	Protospacer
..*   *** ***************** ****  

13. spacer 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to MK907780 (Vibrio phage Pontus, complete genome) position: , mismatch: 9, identity: 0.735

cattatcgtaatccattgttgacagcaaagtgtt	CRISPR spacer
tgtgtgcgttatccattgttgacagcatagtgaa	Protospacer
..*   *** ***************** ****  

14. spacer 3.30|1627325|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 9, identity: 0.735

cattatcgtaatccattgttgacagcaaagtgtt	CRISPR spacer
tgtgtgcgttatccattgttgacagcatagtgaa	Protospacer
..*   *** ***************** ****  

15. spacer 3.82|1630785|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.735

ggaggacatc------ttcatcaattcttcatctgtgatt	CRISPR spacer
------caccacttctttcatcaattcttcaacggtgatt	Protospacer
      **.*      *************** * ******

16. spacer 3.111|1632713|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049243 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

------cgtttctcgatcaagtgatcggcgatatacggca	CRISPR spacer
accaggcgt------atcaagtgctcggcgatatactgcg	Protospacer
      ***      ******** ************ **.

17. spacer 2.7|1622518|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to MH616983 (Microviridae sp. isolate ctje725, complete genome) position: , mismatch: 10, identity: 0.706

ctagatgtgttgtgtttgttgattgccagacaga	CRISPR spacer
cgagatgtgttgtgattgctgattgcaatcgttg	Protospacer
* ************ ***.******* *     .

18. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.706

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
tccgcggcgtcggcgacatcgacggcgacggtca	Protospacer
   ** . .***.* ****************** 

19. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to MT152150 (Pseudomonas phage 8P, complete genome) position: , mismatch: 10, identity: 0.706

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
actggggcgtcgagcacatcgacggctacggtca	Protospacer
*  *  . .**** ************ ****** 

20. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to JF974309 (Rhodobacter phage RcNL1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 10, identity: 0.706

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
gtcgcggcctcgaccacagcgaccgcgacggtcg	Protospacer
.  ** .  ********* **** ********* 

21. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013454 (Burkholderia vietnamiensis strain MSMB608WGS plasmid pMSMB608, complete sequence) position: , mismatch: 10, identity: 0.706

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
caaacgaaaccggccacatcgacggcgacgcctc	Protospacer
 *..* ***.**.***************** ...

22. spacer 3.3|1625525|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NC_016165 (Rhodobacter phage RcapMu, complete genome) position: , mismatch: 10, identity: 0.706

aaggccaaatcgaccacatcgacggcgacggtct	CRISPR spacer
gtcgcggcctcgaccacagcgaccgcgacggtcg	Protospacer
.  ** .  ********* **** ********* 

23. spacer 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.706

gtgatgtcgcgttccggcacgacgcgctcaaaaa	CRISPR spacer
gtgatgtcgagttccggcaccacggaattgctga	Protospacer
********* ********** *** . *..  .*

24. spacer 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.706

gtgatgtcgcgttccggcacgacgcgctcaaaaa	CRISPR spacer
gtgatgtcgagttccggcaccacggaattgctga	Protospacer
********* ********** *** . *..  .*

25. spacer 3.40|1627985|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

aaaaagcgacatagaagagcgcatttatggagac	CRISPR spacer
gctccccgtgatagaagagcgcatttccggagac	Protospacer
.     **  **************** .******

26. spacer 3.76|1630383|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

catgcagaccacctgcgctgacgagcaggaagca	CRISPR spacer
ctcctcgactacctgcgctgacgagcgggaaagg	Protospacer
* . . ***.****************.****. .

27. spacer 3.95|1631652|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 10, identity: 0.697

ttctgtcgccggcggcgctcaggtgctgcagat	CRISPR spacer
catgacggccggcggcgcacaggtgctgctgaa	Protospacer
. . .. *********** ********** ** 

28. spacer 3.95|1631652|33|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

ttctgtcgccggcggcgctcaggtgctgcagat	CRISPR spacer
ggcggtggccggcggcgctcaggcgctgggcca	Protospacer
  * ** ****************.**** .   

29. spacer 3.112|1632779|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 10, identity: 0.706

cgatggcgcaggccaaaaccgttgaggctcaagc	CRISPR spacer
acttttcccaggccaaaaccgttgagtcacaaat	Protospacer
   *  * ****************** * ***..

30. spacer 3.112|1632779|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 10, identity: 0.706

cgatggcgcaggccaaaaccgttgaggctcaagc	CRISPR spacer
acttttcccaggccaaaaccgttgagtcacaaat	Protospacer
   *  * ****************** * ***..

31. spacer 3.4|1625591|34|NC_008639|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 11, identity: 0.676

gtgatgtcgcgttccggcacgacgcgctcaaaaa	CRISPR spacer
acgatgtcgcgtttcggcccgacgcgcagcgtgt	Protospacer
..***********.**** ********   . . 

32. spacer 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 11, identity: 0.686

caaccgggatgtgcagtccgtgcgagatcagctta	CRISPR spacer
aatccgggatgtccagtccgtgcgtgatggcgagg	Protospacer
 * ********* *********** *** .    .

33. spacer 3.78|1630516|36|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 11, identity: 0.694

gcatgtgtcgaacagatcaccatcgaagagaaccgt	CRISPR spacer
ttccgcttcgagcagatcatcatcgaagagaacatg	Protospacer
 . .*. ****.*******.*************   

34. spacer 3.82|1630785|34|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to KY653116 (Staphylococcus phage IME1318_01, complete genome) position: , mismatch: 11, identity: 0.676

ggaggacatcttcatcaattcttcatctgtgatt	CRISPR spacer
taacttagccttcatcaattcttcatctttaata	Protospacer
 .*    ..******************* *.** 

35. spacer 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 11, identity: 0.686

tgcgggagcagcttgatggcggtgacgttttcgac	CRISPR spacer
accggcagcagctcgatggcggtgacgccaagctc	Protospacer
  *** *******.*************..     *

36. spacer 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 11, identity: 0.686

tgcgggagcagcttgatggcggtgacgttttcgac	CRISPR spacer
accggcagcagctcgatggcggtgacgcccaattc	Protospacer
  *** *******.*************...    *

37. spacer 3.94|1631585|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

tgcgggagcagcttgatggcggtgacgttttcgac	CRISPR spacer
accggcagcagctcgatggcggtgacgcccagctc	Protospacer
  *** *******.*************...    *

38. spacer 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 12, identity: 0.657

caaccgggatgtgcagtccgtgcgagatcagctta	CRISPR spacer
attccgggatgtccagtccgtgcgtgatggcgagg	Protospacer
   ********* *********** *** .    .

39. spacer 3.70|1629984|35|NC_008639|CRT,PILER-CR,CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 12, identity: 0.657

caaccgggatgtgcagtccgtgcgagatcagctta	CRISPR spacer
agtccgggatgtccagtccgtgcgtgatggcgagg	Protospacer
 . ********* *********** *** .    .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5092 : 49020 36 Escherichia_phage(14.29%) transposase,protease,tRNA NA
DBSCAN-SWA_2 273032 : 311354 37 Klosneuvirus(33.33%) transposase,integrase,protease,tRNA attL 281591:281633|attR 298952:298994
DBSCAN-SWA_3 350469 : 365126 14 Leptospira_phage(33.33%) transposase,protease NA
DBSCAN-SWA_4 1619046 : 1686454 55 Escherichia_phage(37.5%) transposase NA
DBSCAN-SWA_5 1730860 : 1796933 59 uncultured_phage(10.0%) protease,tRNA,transposase NA
DBSCAN-SWA_6 2231510 : 2286033 40 uncultured_virus(16.67%) transposase,protease NA
DBSCAN-SWA_7 2304394 : 2315234 10 Escherichia_phage(42.86%) tRNA NA
DBSCAN-SWA_8 2447635 : 2516346 57 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_9 2529013 : 2575127 42 Escherichia_phage(40.0%) transposase,integrase attL 2541526:2541585|attR 2574088:2574328
DBSCAN-SWA_10 2619182 : 2711970 48 Escherichia_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_11 2997533 : 3044536 38 Leptospira_phage(33.33%) transposase,integrase attL 2985995:2986033|attR 3032235:3032273
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage