CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008700	Shewanella amazonensis SB2B, complete genome	5 crisprs	cas3,csa3,WYL,DinG,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008700_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008700_1

544806-544901

Orphan

Consensus_repeat	Method
TGGCTCAGTTTTGCCACAACCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008700_1

>merge|NC_008700|1|544806-544901|CRISPRCasFinder
TGGCTCAGTTTTGCCACAACCAGAAATGTCGGACAGGTGTTCATGCCGCTGGCTCGCTGAACTTATGAGCTGATGCTCAGTTTTGCCACAACCAGA

>NC_008700|1|1|544806-544901|CRISPRCasFinder
TGGCTCAGTTTTGCCACAACCAGA	AATGTCGGACAGGTGTTCATGCCGCTGGCTCGCTGAACTTATGAGCTG
ATGCTCAGTTTTGCCACAACCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008700.1\|WP_011758559.1\|539198_542654_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_008700.1\|WP_011758552.1\|531878_532790_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_008700.1\|WP_011758558.1\|536703_538971_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|236724
NC_008700.1\|WP_011758567.1\|552876_553089_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NC_008700.1\|WP_011758563.1\|545442_547188_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NC_008700.1\|WP_011758560.1\|542816_544142_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NC_008700.1\|WP_041410044.1\|549685_551881_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_008700.1\|WP_011758571.1\|557932_558535_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011758554.1\|533074_534367_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NC_008700.1\|WP_011758564.1\|547675_549523_-\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011758572.1\|558531_559185_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011758553.1\|532805_533057_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011758569.1\|554988_556896_+\|RNase-E-specificity-factor-CsrD	unknown	unknown	gnl\|CDD\|236833
NC_008700.1\|WP_011758556.1\|535309_535879_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011758555.1\|534500_535082_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_008700.1\|WP_011758568.1\|553591_554839_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NC_008700.1\|WP_086015238.1\|551946_552729_+\|fimbrial-protein-FimV	unknown	unknown	gnl\|CDD\|274615
NC_008700.1\|WP_011758557.1\|535988_536702_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_008700.1\|WP_011758561.1\|544151_544676_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_008700.1\|WP_157608291.1\|557075_557936_+\|MSHA-biogenesis-protein-MshI	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008700.1\|WP_011758559.1\|539198_542654_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.87949e-122
NC_008700.1\|WP_011758552.1\|531878_532790_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.06046e-51
NC_008700.1\|WP_011758558.1\|536703_538971_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	7.78814e-52
NC_008700.1\|WP_011758567.1\|552876_553089_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	1.26603e-39
NC_008700.1\|WP_011758563.1\|545442_547188_-\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NC_008700.1\|WP_011758560.1\|542816_544142_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_008700.1\|WP_011758554.1\|533074_534367_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	2.32387e-131
NC_008700.1\|WP_041410044.1\|549685_551881_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_008700.1\|WP_011758569.1\|554988_556896_+\|RNase-E-specificity-factor-CsrD	gnl\|CDD\|236833	PRK11059, PRK11059, regulatory protein CsrD; Provisional.	0
NC_008700.1\|WP_011758555.1\|534500_535082_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.46594e-39
NC_008700.1\|WP_011758568.1\|553591_554839_+\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NC_008700.1\|WP_086015238.1\|551946_552729_+\|fimbrial-protein-FimV	gnl\|CDD\|274615	TIGR03505, FimV_core, FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.	4.94024e-12
NC_008700.1\|WP_011758557.1\|535988_536702_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.00312e-71
NC_008700.1\|WP_011758561.1\|544151_544676_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.13735e-131

>NC_008700.1|WP_011758561.1|544151_544676_-|ATP-dependent-protease-subunit-HslV
MTTIVSVRRNNQVVIAGDGQVSLGNTVMKGNARKVRRLYHGKVLAGFAGGTADAFTLFERFEAKLEMHQGHLMRAAVELAKDWRTDRMLRKLEALLAVADAESSLIITGNGDVVQPENDLIAIGSGGNFAQAAATALLENTDLGALEIAEKSLTIAGDICVFTNQFKTIEELSY
>NC_008700.1|WP_011758560.1|542816_544142_-|HslU--HslV-peptidase-ATPase-subunit
MSEMTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDAALRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDTAIKLTREVEMKKCRTRAEEAAEERVLDALLPRPKNDWDNNSDDNSSSRQIFRKKLREGQLDDKEIEIDIAGPQIGVEIMSPPGMEEMTNQLQSLFQNMGQAPAKRKKMKIKEALKQLVDEEAAKLVNQEDLKEKAIELVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELDALTASDFKRILTEPHASLTEQYVALMATEGVTIEFTETGIDRIAQAAWQVNERTENIGARRLHTVMERLMEDISFEASDKSGSKFTIDADYVNAHLDNLVQDEDLSRFIL
>NC_008700.1|WP_011758559.1|539198_542654_+|S8-family-serine-peptidase
MRKLHPRLSRLTLAMLSTSLMAVTAPALAAKKVEPKQDFDNSSVIVKFKETAKKADRKQLLAQYGVSFKDKNDDGVDDRFRNIAKGRLAELTVPRGLDARLMVERLKHNPHIEYAELNHRFYPSVVPNDPSYSQLWGMPKIHAEQAWEMEMGSREIVVGVIDTGFDYNHPDLRDNIWVNPNEVPNNGIDDDGNGYIDDMHGISAINDNGNPQDTHYHGTHVAGTIGATGNNGTGVVGVNWNTAMVGCSFLGSQGGTTADGIQCIDYMVDLKNRGVNIRVLNNSWGGGSFSQALEDAITAANNADILFVAAAGNDAVDNDVNDSWPANHDVPNVMSIASTTRDDQMSYFSQWGLNTVDMGAPGSDVYSTIPGSDYNTLSGTSMATPHVAGAAALILAADPSLTTADVKNILMASGDPIAALEGKTVTGKRLNLEGALNMAGAGGPGYYLLVSPASRTVNQDSSVTFDIDMNAVGGYNGNASFSADVPAGLNAAVTFSSSTVPADGRTTMTVSTDANTSLGNHVITINAVDGDIHKSIDVSLLVYPAGTFSTTYSNDNPVAIPDDNADGVSSVINVPLNLTLTDLVVNVDIAHTYIGDLTVTLTSPSGRAVTLHNRTGGSADNLVASYSVEDFDLEDASGDWTLHVVDSGFRDVGTLNSWSMDVTGGSQPGTNLPPTVTIGANLQNALYLPGDVINFVADATDSEDGDVRASLVWTSSLDGQIGTGGSFSRSDLSQGTHLITVAASDSQGVVSSREFFLYVVSDGTVVSYEDTNRQSIVDLGTVVAEIEVPLGLKIKDMSLFVDIQHSFANDMLIHLVSPNGTRVEIFDRKESGEYYRDLVKTFYPVEFNGEMAAGTWQLVIKDEWSNNSGWLNRWVLGFTHDGGTTTPDNQAPVVSINAPVGGSSVIEGDTVTFVGSAMDAEDGDVTNTLVWSSDLDGVIGNGAYFSTNNLSVGQHTVTASAADSEAASGNAMVTLTVEAAPVNELPVAEFSFQVNHLDVTFTDGSGDADGSVVAWAWDLGDGNTSSLANPSHSYATGGSYQVTLTVTDNNGASHSISKQVSVKASISLDAAGSTDGNKVNISLSWSGSTARNVDVYRDGQLINSVRDRGSFSDRFNSSEGSFAYQVCEAGSDICSEVITVTPVLNTRGKGK
>NC_008700.1|WP_011758558.1|536703_538971_+|tetratricopeptide-repeat-protein
MTQSSAVPHPEGRRSRLGGMPWLSALSSCVPAMMLAMMMALFLSGCGENQAGAAASTEISGDARVQELLTLAAASRNDDPHKTIDYSSQALTLLKEIPEPASEVMALSNLAWAKMLLGDFTEAAQYGEAALTLAENQHQPEMLVVPLNVTGLIYWRQSQLDKALTYYQRALEVAKGLNKRSFEATTYNNMGLIHSDKAEYQLALECFTRARDIHQGLGDERPLATALNNIAGIHATLGDYGEALANQQASLRIREKLDDKPGVAELHHNMGITYEQIGDLKESMLQLQQGLRGFEALGDKTGMAQALTALGMVNQKLKNDVDARISMEQALAYGEELNDGNITATALMSLGKLALAMGDAQGARRYLERGLAIADRLGLVALQAQGRLRLADYFLVTSEVDVARERALQAQQLALTSGDRSLLRDTYEILSQIYERKGDYQQALASHKEFKSINDALFNASSQDRLAWLRSSFEAEKRQRQITELESEKALQAEVIKQQRVARNLWILALIAVAAIMLLLYGRHSQARVNQALQRSIQMQRDLMQAVAHEFRAPLARVQLAFDMLMEADAKEQPQLEDRVLRGLEELDELIREIVKLIKAEGSPRRAPSESLSLAPLLQTLVARQHQLFPEKHLELAAIDEDLRLTASKKHLEWAINNLLSNALRYSREQVRVSCQRESEHLCIIVDDDGPGVPASERERIFEPFVRLDPSRTRATGGIGLGLAIARRLAENAHGHIRVGDSPLGGARFELIWPY
>NC_008700.1|WP_011758557.1|535988_536702_+|response-regulator-transcription-factor
MDLNEFILLVDDDQELTELLSDFLTKNGFEVRTESNGLNAARRIVEERPRLVVLDVMLPDMDGLSICRKVRSQYAGPILMLTGLGDDIDEVAGLETGADDYIAKPVRSRVLLARIRSLLRRSELQETQLQDAPASSESRLVVNGLILDKLERTAALHGDNLELTLAEFELLWLLTKHAGRILDRDAICDHFKDIGYDSTPRTIDLRVSHLRRKMGDDPREPALIKTMRGQGYVLTLN
>NC_008700.1|WP_011758556.1|535309_535879_+|hypothetical-protein
MKIGYLGIPLILVLGGCATGSTPEAKKANASKETAAALQDIYKDHPTAKSAVSSSLGYLVCTGSDSYLFAASTGGGICTFTSGGQSEYYRFASLGAGLGIGFKKVAFLYTFHDAAAMERFRTEGWDAGARAEATARHEEEGGQVAANTSYDVGGVKVFQSAIWGAAAQATVQGYKFWPTDFTQDVTEYN
>NC_008700.1|WP_011758555.1|534500_535082_-|histidine-phosphatase-family-protein
MPTDIFLLRHGQTEFNAQRRLQGHCDSPLTLLGREQARAYGQALKRCGDLDDYALIASPLGRAMETAAIVAQTLGRDPESVIPDQRVKEAGLGEWEQEHIPDIHSSWPGLEAIPGWYIKGPGAEPLSALRERLLHWLEDPATPQKVILVSHGVTGVVLRGLLQNLGDDEMWRQDKPQDAFYYFSQSRLHRISC
>NC_008700.1|WP_011758554.1|533074_534367_-|amidohydrolase-family-protein
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIELKGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPRIWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRAAAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINKEKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLADIIAVDGNPLDNIRLLENVSFVMKDGKVFKG
>NC_008700.1|WP_011758553.1|532805_533057_+|hypothetical-protein
MNWLAISKLGCGRKRAETFLELQRKRYGRTPQQAALSLWKGICTEPSARCIVMDLKNLSRQPHLGGSDKAYLHGVLNHFEHLC
>NC_008700.1|WP_011758552.1|531878_532790_+|sensor-domain-containing-diguanylate-cyclase
MYPVHENYCEFAAVAEVVQCLQQPMALADASGKVLCVNQAAAALLGDEAETFIGELWPSWLESGYQGLYRELQSAADGQYHALQHGAREVQLRRVDGALLWVKLSLSFVQGLLPLFLVGFEDLSSQKAEVQRLTALAATDYLTGLANRRTLMEVLEKQWRQCLARRHPISVVIVDVDFFKQFNDLYGHLKGDECLRQIAAALASTLPSPQCLAARFGGEEFVLLLPGFNAAMAELIARQVSEAVAAIDIAAMGLPQGALLTVSQGIACEISGQFRTADAMLLGADTALYRAKREGRNKIILSD
>NC_008700.1|WP_011758563.1|545442_547188_-|arginine--tRNA-ligase
MKELIQSLLEQTLESLKAQGIVPADFEARIQVDRTKDKSHGDLATNLAMMLTKVAGKPPREMAQLIIDNLPASAQVAKVEIAGPGFINFFIDDNALANQLKAALGDAMLGVKAAAPQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQGDDKANLELSDLESFYRAAKLRFDESDEFATRARQLVVELQSGDAYCNKLWREFNDISLSHCHDVYARLGVSLTRKDVHGESAYNADLAQVVADLDAKGLLAISDGAKVVFQEEFRNKDGEPLPVIIQKADGGFLYATTDLAAMRYRSGVLNADRVLYFVDLRQALHFQQVFSLARTAGFVRDNMTLEHMGFGTMNGEDGRPFKTRSGGVVKLVDLLDEAVERAEQLVRSKNPDMDETEVKEIARVVGIASVKYADLSKNRSSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKKAENIDLTNAELVLDHDKEKELGNKLAQFGEILARMVDKGQPHILCGYLYELAGAFSSFYEACPVLSADSETARDSRLLLSRLTADTLKQGLSLLGIETLERM
>NC_008700.1|WP_011758564.1|547675_549523_-|hypothetical-protein
MQISLLLRGGLLLPLALGLAACGGSDKDEDTEQPTEPAQLKIGGSISGLNGTLGLTLTAGSTQTQNVTGSSFQFANTVAEGTGFSISISSQPEGQVCSITGASGTLSSANANAAQVSCASAQAGLFLDSPVAGIGYRTETQSGVTDAMGRYQYLPGETVVFFIGDLTFPAVEATGLVTPNNFADGDDTTVSNIARILQTLDEDEDPSNGITLSQATTEAFNGTALDIGSTGFADAVASVLTTLDNRTLVSDADAKAHVETSLRQQLRGSWLYKEGEGMRNILTFIDDSHYLILHEHTDDGDQLAGSAELGGYEWDPETGALSLTLFDESDNSGGFFDGGSHEAKTMTLGESLTIQFSEDSIMLSRIDDGSNPLIGSWTVWEESDDNLTVVVFLSGTEYALVHTNNQESYGESTPQALSGEFGQYQWDGSSFSVTGITVDADGPGGLYDKDSSTSGDTLMLKPFGEIWFQDAEDGRYSLPKLERFAAMLQDYDSNHPLGQVSLVRSSEGFSDADVLARQFSMDFKLFDGDTGTFHVAFGADGMGTIWEGEEPSLAMSWHINSAGSIEINYTDTSATTFVMVLAPIAGKPNAVLISLTSSEDEDSLWQSQMMAESAN
>NC_008700.1|WP_041410044.1|549685_551881_-|primosomal-protein-N'
MPQFVEVALPVPMRRSYSYRLPAQPSTSPCPGKRVKVPFGKQQLIGLITATKDSCELPDAQIKEIIEIIDDEPALSEPLYKLTLWAARYYFCSQGQMLTQALPVALRKGADAAPKSRTWLKLTDKAREAGITTLKRAPAQQKLAEMLWQHPLSLDEFNAMELSKAALKGLEDKDWVQREQVPVDINLGWRTALELGETPHKLNKEQAVAVAAINAAEGYACALLEGITGSGKTEVYLSVLEKILSEGKQALILVPEIGLTPQTIDRFRRRFKVEVAVIHSNLTDNQRLDAWRAGRSGEAAIIIGTRSALFTPMAFPGIIILDEEHDSSFKQQEGVGYHARDLAVMRGHLENIPVVLGSATPSLESLQNALSGRYRHLHLGERAGNAKKVRQGIIDIRNQPLKAGMSAALLNEMRLHLDAGNQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQKLGEIRCHHCGNQYAIPRQCHNCGSTMLMGQGIGTEQLEQVLKEEFPKYPVVRIDRDTTRLKGSLENHLQAIHRGDYKILVGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVAGRAGRAAKPGTVLLQTHQSDNPILRELMHKGYGDFARGQLSERKQAALPPAWHMVLARAEAHRAEDAEAFLAAIAAMLPRDRGFEVIGPLPAPMDRKAGKHRRQLMFQAEQRQGLQQALEAILPAIDLLPEAKRCRWSLDRDPQDLL
>NC_008700.1|WP_086015238.1|551946_552729_+|fimbrial-protein-FimV
MQPSNYARKTMQENDAGKTMTRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVRQGTREEKLMVEPLNNFMLLLFGVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAKAPSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGCAVEYQPGETLWRIASRYAPRWNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSLE
>NC_008700.1|WP_011758567.1|552876_553089_+|50S-ribosomal-protein-L31
MKPGIHPEYAQITATCTCGNVIKINSTVGKDLHLDVCGACHPFYTGTQKVVDTGGRIDKFNKRFGMLGKK
>NC_008700.1|WP_011758568.1|553591_554839_+|malate-dehydrogenase
MADLRQQALDYHEFPVPGKMAVCLTKPAETSMDLALAYSPGVAEPVREIASNPADAYRYTAKGNTVAVISNGTAILGLGNLGPLASKPVMEGKALLFKHFANIDATDIQVKHRTTEEFINTVEAIADTFGGINLEDIKAPECFEIERELIERCAIPVFHDDQHGTAIVTAAGMINALEIQGKSIDKAVFVCMGAGAAAIACMTMLVKCGAQRENVYMLDRKGVIHTRRDDLNEYKALFANNTDKRTLQDVIKGADVFLGLSGPDVLGADDVLLMADNPVIFACSNPDPEIKPELAHDIRKDIIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASRINDEMKIAAVHALADLAKEPVPASVLAAYPNVSSLSFGPEYVLPKPMDPRLLPRVARAVAQAAIDSGVAAIDPLPENYLA
>NC_008700.1|WP_011758569.1|554988_556896_+|RNase-E-specificity-factor-CsrD
MQLTRMLTKKLISFWMMSLAAVAFVFLLSALMSFVQLTYRFQQQKVAELETMLVNHYQHQSSWELDSWLPPMLLAYNTVSFRLTRGDELVFEYQGNLGSDQTVVYERALYANDALEMRLELPRPFSAHRLGWRELMILLVGIVAVAGFVRFGFLWFSAELEGIEALAQRSKLILDGKLDEAAKTPGNGKPRLINRALSRLLAELADAHKERARFDKFIRSNTFLDPQTRIGNRLFLQNRLNALSSDQGMLAPGVLYLLEMEDLDILQQEAGDEVVLELLHSTINAINLVLQTQANSIFARRSHNQLAIVVPQISLVEADALADKLLKICLAQPLPKIEEADNFFHLGGAYFKEGDMPEPLLDEADMALRAAQLQGASGWFMYDKGAVDQEFAKGSVRWRSFLENALVNRNFVTFAQPVCEGDGSHHHHEIFTRVRDPMGSLVRATLFIPMAVKCGLMPQIERQVVERTLFELMSDTGTAKRHYSINLSVDSLTSRAFVRWLQTTLLEYRHLASRLVFEVTEDMVMKHRSQLEPKLNMLRKMGSRICVDHVGQQVVSTQYIRELGFNFIKLHRSVVRQIDLRPENQLFVRSLIGSLYRTDVQVFAEGVGSFEEWQTLQILGVSAGQGTYFGDPQQI
>NC_008700.1|WP_157608291.1|557075_557936_+|MSHA-biogenesis-protein-MshI
MGRSSFWHKKTERCDLGLYLANNSCWVFPAAGAETDAAEIPLDGDNWQGLMAAIVSRFGPARLALVLGAGRYQLLLTDKPAVPENELADAVRWSIKDMVSEPVSSLKLDYFEPPHTHSNKITVVTVSRSALEHLVLAADDKDCEIVGISIEELVTTRLFATEPQARMVVSHVPGNELLLTVIKDGELWMQRRVRGFSELDEIAESDLAYGAADNLSLELQRSMDYFESQLRQPPVTSIELLTQGATQSLARLVGANFNQRVTAMNNEPVGLTFARLGCEEFLGARP
>NC_008700.1|WP_011758571.1|557932_558535_+|hypothetical-protein
MTKTRINLYDESLLPTRQRLNFTLLTQSVVAVLGILLLAGLAIGWQLSTVKTELNSARAESDRLGQQKQQLEAQLANHKADATLVAEVTELQDFLALKRQLLSELGNQQRFASGGYGSLMTDLASAADGNVWLERILVAEGELRFEGFAKAPTSVPLWVERLKHTQTLQGKQFSTMTMAREDGMPLGFILTSGALREEKP
>NC_008700.1|WP_011758572.1|558531_559185_+|hypothetical-protein
MSRFDSLATKYDALTLRERGIIFFAALFGLLMLLSMPVESLWKEYRLASQTLSQTRATNHISEQQLALYQERLAQDPHRDFLQRKALLEKEHQQLDKALEEQTLDMVPARLMPTVLARMLDGAKGLTLTGFESIAPVPLIEVGEGEQKLNLYSHGMALTLEGDFFAVQRFVEAVEGLENKLYWKRMDYRVKAYPKAEVQLMLHTLSVNEDFIRVANQ

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Click the colored protein region to show detailed information

Crispr_ID: NC_008700_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008700_2

1588794-1588891

Orphan

Consensus_repeat	Method
TGTGGCGAGGGCATGAAAAAAGGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008700_2

>merge|NC_008700|2|1588794-1588891|CRISPRCasFinder
TGTGGCGAGGGCATGAAAAAAGGCCATGAGACTGCCGAAAAAGCCAAAGAAGGTAAGTGCGGCGAAGGCAAATGTGGCGAAGGCATGAAAAAAGGCCA

>NC_008700|2|2|1588794-1588891|CRISPRCasFinder
TGTGGCGAGGGCATGAAAAAAGGCCA	TGAGACTGCCGAAAAAGCCAAAGAAGGTAAGTGCGGCGAAGGCAAA
TGTGGCGAAGGCATGAAAAAAGGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008700.1\|WP_011759415.1\|1584816_1585722_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NC_008700.1\|WP_011759411.1\|1581543_1581867_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NC_008700.1\|WP_011759425.1\|1591485_1592031_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_008700.1\|WP_011759414.1\|1584323_1584659_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NC_008700.1\|WP_011759410.1\|1581147_1581531_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NC_008700.1\|WP_011759413.1\|1582455_1584315_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NC_008700.1\|WP_041410205.1\|1587304_1588258_-\|tRNA-dihydrouridine(16)-synthase-DusC	unknown	unknown	gnl\|CDD\|236713
NC_008700.1\|WP_011759427.1\|1595026_1595356_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_008700.1\|WP_011759428.1\|1595369_1595969_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_008700.1\|WP_011759422.1\|1589877_1590636_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225760
NC_008700.1\|WP_011759429.1\|1596150_1598064_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NC_008700.1\|WP_011759418.1\|1586763_1587117_-\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376508
NC_008700.1\|WP_011759421.1\|1589044_1589881_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NC_008700.1\|WP_011759426.1\|1592156_1594886_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237863
NC_008700.1\|WP_011759431.1\|1599151_1599796_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NC_008700.1\|WP_011759417.1\|1586190_1586622_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_008700.1\|WP_011759412.1\|1581876_1582401_+\|co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
NC_008700.1\|WP_049757973.1\|1590997_1591321_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NC_008700.1\|WP_041409711.1\|1598170_1599010_+\|co-chaperone-YbbN	unknown	unknown	gnl\|CDD\|225660
NC_008700.1\|WP_011759409.1\|1579902_1581117_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450

Protein	Function_ID	Function_description	E-value
NC_008700.1\|WP_011759415.1\|1584816_1585722_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	9.9586e-156
NC_008700.1\|WP_011759411.1\|1581543_1581867_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.01693e-63
NC_008700.1\|WP_011759425.1\|1591485_1592031_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	7.83255e-99
NC_008700.1\|WP_011759414.1\|1584323_1584659_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.08792e-59
NC_008700.1\|WP_011759410.1\|1581147_1581531_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	9.94386e-97
NC_008700.1\|WP_011759413.1\|1582455_1584315_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NC_008700.1\|WP_041410205.1\|1587304_1588258_-\|tRNA-dihydrouridine(16)-synthase-DusC	gnl\|CDD\|236713	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC.	1.52239e-142
NC_008700.1\|WP_011759427.1\|1595026_1595356_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	6.75084e-42
NC_008700.1\|WP_011759428.1\|1595369_1595969_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.34128e-111
NC_008700.1\|WP_011759422.1\|1589877_1590636_+\|hypothetical-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.42612e-31
NC_008700.1\|WP_011759429.1\|1596150_1598064_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NC_008700.1\|WP_011759418.1\|1586763_1587117_-\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|376508	pfam01258, zf-dskA_traR, Prokaryotic dksA/traR C4-type zinc finger.	0.000216255
NC_008700.1\|WP_011759421.1\|1589044_1589881_+\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	1.24884e-155
NC_008700.1\|WP_011759426.1\|1592156_1594886_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237863	PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional.	0
NC_008700.1\|WP_011759431.1\|1599151_1599796_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.01654e-140
NC_008700.1\|WP_011759417.1\|1586190_1586622_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.76462e-91
NC_008700.1\|WP_011759412.1\|1581876_1582401_+\|co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	3.82572e-94
NC_008700.1\|WP_049757973.1\|1590997_1591321_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	2.27831e-37
NC_008700.1\|WP_041409711.1\|1598170_1599010_+\|co-chaperone-YbbN	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.98531e-55
NC_008700.1\|WP_011759409.1\|1579902_1581117_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0

>NC_008700.1|WP_041410205.1|1587304_1588258_-|tRNA-dihydrouridine(16)-synthase-DusC
MRIILAPMEGVLDHLMRELLSSINPYDLLVTEFVRVVDQLLPEKVYYRLCPELKNNGLTKSGTPVRVQILGQEPGWMAENALRAVTLGSRGVDANFGCPAKMVNRSKGGAVLLQYPELIHDIVKAMRQAVPSEQPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPAYWEYITEVRERLPIPVIANGEIWNRDDALRCMEVTGCDSIMIGRGALSMPNLAASIKGDTPYDWATTLRLMIHYSELETSGLKATYYPARIKQWFSYLSREYPEADDLFREIRIHKTTEDILNGLKLAATKLAPMKS
>NC_008700.1|WP_011759418.1|1586763_1587117_-|TraR/DksA-family-transcriptional-regulator
MTIANTRQALSQLEATLREEIAALPFPELQGSALKASLSELIDTLTRLHLADDLIYDRLTRLDAAQCQLDLGLYGLCADCESEIEQDRLIRDPTVQRCLSCDDHYRHEHRHELRLNH
>NC_008700.1|WP_011759417.1|1586190_1586622_+|nucleoside-diphosphate-kinase
MAIERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIAAKMVHLTKEQAEGFYAEHSERPFFGALVSFMTSGPIMVQVLEGENAVLANREIMGATNPAQAARGTLRADYAASIDENAVHGSDALASAEREIAYFFAADELCPRTR
>NC_008700.1|WP_011759415.1|1584816_1585722_+|30S-ribosomal-protein-S6--L-glutamate-ligase
MRIAVLSQGPELYSTRRLVEAAKERGHEVRVINPLECYMNINMRASSIHIAGEELPIFDAVIPRIGSAITFYGCAVLRQFEMMGVYTLNESVAVTRSRDKLRSMQLMSRRGIGLPITGFANKPSDIPDLIEMVGGAPLVIKLLEGTQGIGVVLAETRKAAESVIEAFMGLKANIMVQEYIREANGADIRCFVLGDKVVAAMKRQAAPGEFRSNLHRGGSATLVKLTPEERSVAVRAAKTMGLNVAGVDLLRSNHGPLVMEVNSSPGLEGIEGATGKDVAGAIIAFIEKAAHKKPKQTGARG
>NC_008700.1|WP_011759414.1|1584323_1584659_+|ISC-system-2Fe-2S-type-ferredoxin
MPQIVFLPHEELCPDGAVVEAKVGESILDVALRNGIHIEHACEKSCACTTCHVVVREGFDELEPSDELEDDMLDKAWGLEPESRLSCQAKVVDCDLVVDIPKYTINMVSEG
>NC_008700.1|WP_011759413.1|1582455_1584315_+|Fe-S-protein-assembly-chaperone-HscA
MALLQIAEPGQSAAPHQHRLAVGIDLGTTNSLVAAVRSGEARTLADAQGRHSLPSIVRYAKEGISVGQEAELHSATDAANTIVSVKRFMGRSLADIEAGSQRFPYQFSASENGLPLFNTPQGQVNPVQVSAEILRPLIARAEDTLGGSLEGAVITVPAYFDDAQRQGTKDAAQLLGVKVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLNRGVFEVLATGGDSALGGDDFDHLLGGYLAQQWGLDLADTGLGRKLMIEARRVKEALTETDTVTATLEYQGQAYHHDIDRGTFDALIAALVKKTIAACRRALRDAGIDAGEVLETVMVGGSTRVPLVRSEVEAFFGKAPLTSIDPDRVVAIGAAIQADILVGNKPESDLLLLDVIPLSLGIETMGGLVEKIVSRNTTIPVARAQEFTTFKDGQTAMAFHVVQGERELVQDCRSLARFTLKGIPPLAAGAAHIRVTFQVDADGLLSVTAMEKSTGVKSSIQVKPSFGLSDTEIATMLKDSMKHAKEDISRRMLAEQQVEAARVLESLHSALAKDKVLLSEEELNDITAAMAELAEVAKGDDADAILAAIERLDNQTQEFAAKRMDNSIRNALKGQSVDTI
>NC_008700.1|WP_011759412.1|1581876_1582401_+|co-chaperone-HscB
MNYFELFNLPVAFDVNTSELADKYRELQRTVHPDKFAAASEQEKLLAVSRTAMVNDGFQTLKDPIRRAEHMLALKGVDIRHETQTVRDTAFLMQQMEWREALEEITHADDPHCLIADLYQSFGDFQKQVTAKLKTLLVSEDDNDLQAAADQVRKLKFMAKLHVELERAEDALLD
>NC_008700.1|WP_011759411.1|1581543_1581867_+|iron-sulfur-cluster-assembly-protein-IscA
MAISMTPAANERVKAFLANRGKGVGLRLGLKTSGCSGMAYVLEFVDDLNDDDEVYEIDGVNIIIDAKSFIYLQGIELDFVKEGLNEGFKFNNPNAKGECGCGESFTV
>NC_008700.1|WP_011759410.1|1581147_1581531_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSEKVIDHYENPRNVGSFDKNDPSVVTGMVGAPACGDVMKLQLKINDAGIIEDAKFKTYGCGSAIASSSLVTEWVKGKSIEEAAAIKNTDIAEELALPPVKIHCSILAEDAIKAALEEYKHKQAK
>NC_008700.1|WP_011759409.1|1579902_1581117_+|IscS-subfamily-cysteine-desulfurase
MKLPIYFDYAATTPVDPRVAQKMMQYMTMDGIFGNPASRSHRYGWQAEEAVDVARSQVADLINADHREIVFTSGATESNNLAIKGVAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLEPGVNGIIPMERLEAAMRDDTILLSLMHVNNEIGVVHDIDAIGELCRSKGIIFHVDAAQSAGKLPIDVQITKVDLMSISGHKMYGPKGIGALYVRRKPRIRLESQMHGGGHERGMRSGTLATHQIVGLGEAAAIAKADMESDNARIHALRDRLWNGIKDIEETYVNGDFEQRYCGNLNVSFNFVEGESLMMALKDLAVSSGSACTSASLEPSYVLRALGLSDEMAHSSIRFSIGRFTTEEEVDYAIGIIQGSIGKLREMSPLWEMFKDGVDLSKVEWVHH
>NC_008700.1|WP_011759421.1|1589044_1589881_+|DUF692-domain-containing-protein
MAVSSLAGLGLRREMLAEFSQSVPAQIDFFEVAPENWMALGGKYGKQFRALTERHAFFCHGLSLSIGSSAPLDIDFIKGIKAFLDLHGIAVYSEHLSYCSGSGHLYDLMPMPFTPEAVRHIAGRVKQVEDIIERPLILENISFYAAPGAQMTELEFVLAVLEEADCQLLLDVNNIYVNSINHNYDAAAYLAAMPTERIRYLHVAGHYVEAPDLIVDTHGADIVDPVWQLLCDCYALHGPLPTLLERDFNIPPIGELLQEIDRIRDYQAAAIRTSRRAG
>NC_008700.1|WP_011759422.1|1589877_1590636_+|hypothetical-protein
MSFKDIQADFIEAIRRPDLPCPHGIAPQRMGVYRELFFNNVSGFVNSGFPVLKSLYGEAQWQAQLRQFFTEHDCQNPLFIGIAGEFLAFLSARERQVDEPPFLLELAHYEWLELVVATAMEQGDEAAFDDTALAQQAYLDARLGLASHARVAQYHFEVEKISPQYQPDTPLPSPCYFCLYRDSDDEVSFLKLNPMTAQLLAVLEANTGIKYIELLQKMQALYPNFDGQQLREGIAQVLGQMAVRGVVVQKLQ
>NC_008700.1|WP_049757973.1|1590997_1591321_+|YbaN-family-protein
MGVAGVFLPLLPTVPFVLLAAFCFARSSERLHRWLMTHPWFADALNNWDQKKAIRRGLKRKAMVLSSLSFAISIAVVPLLWVKLMLFSLLVALLAFLHSVPELEDTP
>NC_008700.1|WP_011759425.1|1591485_1592031_+|adenine-phosphoribosyltransferase
MNTDSLALIKQSIKTIPDYPKAGIMFRDVTSLLEDHTAYQTAMKLLVERYKDSGFTKVVGTESRGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDTLEIHVDAIKAGDKVLVIDDLLATGGTIEATVKLIRRLGGDVAHAAFVISLPDLGGEKRLQAMGLEICKLCEFEGD
>NC_008700.1|WP_011759426.1|1592156_1594886_+|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRFKVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQPQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTMLGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPATASISDNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFVPEKPVSRWQSGEGVSAAEALKLVAPSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGIASTLVAGTHSPVRTTEEPAVKADSSVATEEAPSGDDDVHEAESDALFAEQNLLISQAESQGFNPGYDAVNAGDNDLPLHDAPPLFDEMAYADYPQSYSADISETPVERGLDDGAGFQLQNEQSQSDHLQSGATGAQSKVVAESQPVNTPASAFGDDLLDAVLAAREDLLSGITSEAKEDEAKKPVSSFERRRMAVQETSTVPVTTAPTDKGTQDEISLGAMSANTQTATLTQATASVSGADVAADYDRPPWEDTATPDDSSKAPELALDYAVNRESAPVNAESPDKAHPEEYTSAAPHTQTPQPLKAESQTALQAKGQTHTDEVSSSDGVHCANHSAASPIGGDETDLRWYKLMGALEIGGRVRQLAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSKALGHEAEIALEVGEVPGRETPLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDDSISYPPDLLAQRGRALPTPPALAQEPVV
>NC_008700.1|WP_011759427.1|1595026_1595356_+|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGMGNLMKQAQMMQEKMAKMQEEIARMEVTGESGAGLVKVTMTGTHNVRKVEIDPSLLEDDKELLEDLVAAACNDAARRVEENQKTKMAEVTGGMQLPPGMKMPF
>NC_008700.1|WP_011759428.1|1595369_1595969_+|recombination-protein-RecR
MKFSPLVDELIQSLRCLPGVGPKSAQRMAFALLESDRKAGIRLADTLSRAMSDVGHCQKCRTFTEQSLCPICSSSRRGEADTLCVVETPADVLAIESGGHFQGRYFVLQGHLSPLDGIGPEELGLSLLEGQLVGGGISELILATNPTVEGDATAHYIADIARRAGVAVSRIAHGVPVGGELEYVDSTTLALSFNGRLPL
>NC_008700.1|WP_011759429.1|1596150_1598064_+|molecular-chaperone-HtpG
MSHQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDSLYEGDGELRVRVSADKDKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTAEFFKNLSGDSAKDSQLIGQFGVGFYSAFIVAKRVEVFTRAAGHSADEGVKWESEGEGNFSVETITKAERGTKIVLHLRDEEKEFADDWRLRSIITKYSDHISIPVEMYQEGTPERDGPDGEKIPATEGQWKAMNKATALWTRSKSDVSDEEYKEFYKHISHDFADPLDWSHNKVEGNQEYTSLLYIPAKAPWDLWNRDRKHGLKLFVQRVFIMDDAEQFMPSYLRFVQGLIDSNDLPLNVSREILQDNKVTRNLRQALTKRVLSMLEKLAKDDADKYQQFWAEFGTVLKEGPAEDFANRERIAGLLRFASTHTGDATPSVSLDDYIGRMKEGQEKIYYIVADSHEAAANSPHLELLKKKGIEVLLLSERIDEWLINHLHDYKEKALHSVTRGDLDLGALEDEAEKAAQEKLAQESEPLVERFKSALGDKVSDVKITTRLTDTPACVVTGEGEMSSQMIKLMQAAGQPVPESKPTLELNPTHPLVARLDKEQDETAFAEWAEMLLAQATLSERGSLADPSAFIKLVNQMLLKSVG
>NC_008700.1|WP_041409711.1|1598170_1599010_+|co-chaperone-YbbN
MAGVALTRDNIQSVLEQSLEAPIVLSFFAPSHPDSVAMNTRLAQVIKGRGVLATVNCETEMEIASYFRIQALPTVLVISQGQPVDGFAGDKTDAELDAMLSQHLPQAWKQVLLQAKQTLADGQGADALALLKSIEMDAAAIGAEWTLLMAEAEIAQGELSSAELRLAAVGLADQDAHYHSLKAKLALAREAADTPEVRELQSRFANESDNQALRIELARALAQAKREEEALELLFDVLQRDLGAEGGEVKQAFMGILTAMGQGSSIANGFRRKLYSLLY
>NC_008700.1|WP_011759431.1|1599151_1599796_+|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEHYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGQLVSDELIIGLVKERIAQDDCANGFLLDGFPRTIPQADAMAANGISIDHVIEIDVPDEEIVNRMSGRRVHPGSGRVYHVVFNPPKVEGKDDVTGEDLVIRPDDEESTVRKRLGIYHEQTKPLVDYYGKVAAEGNTKYTKFDGTQSVAEVSKLIQAALS

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Click the colored protein region to show detailed information

Crispr_ID: NC_008700_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008700_3

1968006-1968098

Orphan

Consensus_repeat	Method
GCAAAAACGCGACATTAGCTCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008700_3

>merge|NC_008700|3|1968006-1968098|CRISPRCasFinder
GCAAAAACGCGACATTAGCTCAGTCAGATAGGAAGTAGCGATGCCTCCGCCTTGATTGAAGTTAAGGACGCAAAAATGCGACATTAGCTCAGT

>NC_008700|3|3|1968006-1968098|CRISPRCasFinder
GCAAAAACGCGACATTAGCTCAGT	CAGATAGGAAGTAGCGATGCCTCCGCCTTGATTGAAGTTAAGGAC
GCAAAAATGCGACATTAGCTCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008700.1\|WP_011759726.1\|1969781_1970057_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NC_008700.1\|WP_011759719.1\|1961054_1961231_+\|ribosome-modulation-factor	unknown	unknown	gnl\|CDD\|184747
NC_008700.1\|WP_011759722.1\|1964789_1965434_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NC_008700.1\|WP_011759733.1\|1980495_1980912_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NC_008700.1\|WP_011759730.1\|1973504_1977398_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NC_008700.1\|WP_011759724.1\|1967305_1967854_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NC_008700.1\|WP_011759715.1\|1954712_1956839_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_008700.1\|WP_049757870.1\|1970237_1971680_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536
NC_008700.1\|WP_011759725.1\|1968632_1969796_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NC_008700.1\|WP_011759716.1\|1956831_1957059_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_008700.1\|WP_041409741.1\|1971826_1972375_+\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|283577
NC_008700.1\|WP_011759720.1\|1961419_1961935_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
NC_008700.1\|WP_011759729.1\|1973021_1973309_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
NC_008700.1\|WP_011759717.1\|1957060_1958977_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236861
NC_008700.1\|WP_011759731.1\|1977394_1979233_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_008700.1\|WP_041409743.1\|1979375_1980410_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|366471
NC_008700.1\|WP_011759734.1\|1981025_1984895_+\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|182986
NC_008700.1\|WP_011759718.1\|1959004_1960882_+\|DUF3466-family-protein	unknown	unknown	gnl\|CDD\|378770
NC_008700.1\|WP_011759723.1\|1965436_1967257_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_008700.1\|WP_011759721.1\|1962013_1963744_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223994

Protein	Function_ID	Function_description	E-value
NC_008700.1\|WP_011759726.1\|1969781_1970057_-\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	1.11729e-25
NC_008700.1\|WP_011759719.1\|1961054_1961231_+\|ribosome-modulation-factor	gnl\|CDD\|184747	PRK14563, PRK14563, ribosome modulation factor; Provisional.	1.06438e-28
NC_008700.1\|WP_011759722.1\|1964789_1965434_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	1.63559e-152
NC_008700.1\|WP_011759733.1\|1980495_1980912_+\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	9.78111e-60
NC_008700.1\|WP_011759730.1\|1973504_1977398_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	6.03746e-129
NC_008700.1\|WP_011759724.1\|1967305_1967854_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	6.38873e-74
NC_008700.1\|WP_011759715.1\|1954712_1956839_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_008700.1\|WP_049757870.1\|1970237_1971680_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	8.21819e-103
NC_008700.1\|WP_011759725.1\|1968632_1969796_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	8.35291e-25
NC_008700.1\|WP_011759716.1\|1956831_1957059_+\|thioredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	6.03794e-09
NC_008700.1\|WP_041409741.1\|1971826_1972375_+\|DUF882-domain-containing-protein	gnl\|CDD\|283577	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.	1.76692e-71
NC_008700.1\|WP_011759720.1\|1961419_1961935_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	9.653e-124
NC_008700.1\|WP_011759729.1\|1973021_1973309_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	8.49967e-54
NC_008700.1\|WP_011759717.1\|1957060_1958977_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NC_008700.1\|WP_011759731.1\|1977394_1979233_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	6.81592e-110
NC_008700.1\|WP_041409743.1\|1979375_1980410_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|366471	pfam01112, Asparaginase_2, Asparaginase.	1.85845e-149
NC_008700.1\|WP_011759734.1\|1981025_1984895_+\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NC_008700.1\|WP_011759718.1\|1959004_1960882_+\|DUF3466-family-protein	gnl\|CDD\|378770	pfam11949, DUF3466, Protein of unknown function (DUF3466). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 564 to 612 amino acids in length.	0
NC_008700.1\|WP_011759723.1\|1965436_1967257_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_008700.1\|WP_011759721.1\|1962013_1963744_-\|AAA-family-ATPase	gnl\|CDD\|223994	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].	2.50171e-109

>NC_008700.1|WP_011759724.1|1967305_1967854_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNLPIALTLFRLFLLPVFVVIFYLPYTWTPFAAAFVFWLAAITDALDGYAARKLGQLTRFGAFLDPVADKVMVVTALVLLVADYNSPWMTLPALFMIGREIVISALREWMAEIGKRGAVAVSWIGKYKTAAQMVAIIGLIWKPNTFLVDLAFGLFYLAAILTFWSMMSYILAAWKDLTSE
>NC_008700.1|WP_011759723.1|1965436_1967257_+|excinuclease-ABC-subunit-UvrC
MFDHKAFLKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIANIDVTLTHSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGAQREKGEYFGPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKISDEDYDEQVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQNVSGQQGDMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFYLGNEAHRSIPKEVLLGEEFEDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAANAVVTKLAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKGEYRRYNISGITGGDDYAAMAQALSRRFDKIERTGKVPDVLFIDGGLGQLRAAMTIVNDKFAELDRQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHRFAITGHRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKVPGISAEMAQTIHDALRG
>NC_008700.1|WP_011759722.1|1964789_1965434_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MISVYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVSWSKQNEADVVLMDMNMPGIGGIEATRKILRYQPHARIIVLSMHTEDPFPTKVMQAGAFGYLTKGAKPPEVLQAIRQVACGQRYLSPEIAQQMALSQLTQTDENPFKQVSERELQIAMMIINSMKVNDIAEQLNLSPKTVNSYRYRLFAKLGISSDVELTRLAIRHKIIDPGKF
>NC_008700.1|WP_011759721.1|1962013_1963744_-|AAA-family-ATPase
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGVHRESLFKALAQAAPVPPRELVARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKRADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREGLWQVLLDVLDKGYYRVGKDMNIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAHEGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAIKQLTRRHNSSERFSAQSFDDSFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQGVIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTLYGLVQTRLDKLAGDEPLDEPEGFFASLLAKWPFSRA
>NC_008700.1|WP_011759720.1|1961419_1961935_-|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MTKANSYTKEELIACGHGELLGKNSPRLPVDNMLMIDRVVTINDNGGTFGKGEIVAELDIDPDLWFFGCHFVEDPVMPGCLGLDAMWQLVGFFLAWEGAQGKGRALGVGEVKFTGQVLPGAKKVTYKLNIKRTIHRKLVMGIADATLEVDGREIYSATDLKVGVFTDTSTF
>NC_008700.1|WP_011759719.1|1961054_1961231_+|ribosome-modulation-factor
MKRQKRDRLDRAFAKGFQAGVGGRSKEMCPYSNLDSRSQWLGGWREGVDGRITGLFTK
>NC_008700.1|WP_011759718.1|1959004_1960882_+|DUF3466-family-protein
MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLRGTLEGTRNGYAMGVNENDELVGISKGRKKLSTDDVEGGIIDSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAWVPTFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVGATTAPQKTLEYTGSIEDQEFWYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGNLVTGYASTDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQLDNDTVTGTALPLGLTPAADSTFTYTAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWTRKQDGSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQGYLRDKFFYLDTKATDAKPVVPNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFSNLNNLLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTAFVRKPVYKVDENGLPVVENGKFVFELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDENTGGEKYERQGAASLFALLLLPLVWLRRRVR
>NC_008700.1|WP_011759717.1|1957060_1958977_+|ABC-transporter-ATP-binding-protein
MSLVRITNGSLAYGYVPLLKNADLSIEAGERVCIVGRNGAGKSSLLKILDGEVHLDDGELNLATDVRISRLQQDPPKAESGSVYSYISQGLKEAGEVLERYHQLSHDLATADDTMQARMLKEMETLQAKLDHLNGWQLDTRIQAHCVRLGLDPDKPLSELSGGWQRKVALARALVSEPELLLLDEPTNHLDIDTIEWLEQFLLSYKGAIVFISHDRGFINRMATRILDLDRGVVTSWPGTYQAYLEGKAEWLRHEAEANAQFDKKLAEEEVWIRQGIKARRTRNEGRVRALKALRMERSERLNRQGNVRMNVAEGERSGKLVFDVSELNYNLADKDLVRDFSVSVMRGDRIALIGPNGCGKSTLIKLLIGQLEPQSGNIKTGTKLEVAYFDQYRENLDEEKTVEENVGDGKQTVTVNGRDRHILSYLQDFLFSPARARTPVKALSGGEKNRLLLARLLLRPANLIILDEPTNDLDIETLELLESMLTEYDGTLLIVSHDRAFIDNTVTSSWWFTGNGRWAEYVGGYQDAVDQGARFYTGAAEPEGQKSVQAQAPVVKQQADVKTQKKLSYKLQRELDSLPELMEALEAEIAALQQEVNQPEFYAQAQDTVNARLALLGEKEQQLDVYFERWEELESMK
>NC_008700.1|WP_011759716.1|1956831_1957059_+|thioredoxin-family-protein
MAEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAELGWPFELVDVTSFTGV
>NC_008700.1|WP_011759715.1|1954712_1956839_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MFNFFAAAPKGFEYALAKELETLGAENVRESVAGVYFSASLAQGYQITLWTRLASRIVLILFTGECQSAEQLYNAAYTIDWPSHFSNRSTFSIDFHGTGGFINNSQFGALKIKDAVVDRFRDDDLSRPDVVKGHPDMRIDAHYGRGKITIGINFSGAALHQRGYRGNTGEAPLKENLAANMLYRSGWADNPVTLLDPFCGSGTVLIEAALMACDIAPGLMRERFGFEHWRRHDQALWQQVIEEAKARASLGKTRCQLKFYGSDIDSRVVALAKRNANSAGVFDFIDFKVANALNLEPPVAEGMVLTNPPYGERLGNVTSLLQLYFQLGEKFKQSYGGWKLGLLCSDMELVSSLKLKADKQMKMYNGALECAFNLYTLHATSTRRDIPVDTTGQGGEIAAPFANRLKKNLKQLEKWAKREGIDSYRLYDADIPEYNVAVDRYLDYVVVQEYAAPSAIPEAVTKRRLTDVLLALPRALGIDPDKIVLKTRERQKGTNQYQKLDGEKLELVTTEYGCSFKLNLTDYLDTGLFLDHRLTRKLVGEKAKNRDVLNLFAYTGSASVHAGKGGAKSVTTVDMSNTYLNWAKDNFMLNGLIGRQYQFEQADCLQWIRDCERQFDLIFIDPPTFSNSKRMEDSFDVQRDHVDLLASLKKLLRPGGEIVFSNNKRKFKMDMEALAAAGLKAVNIDDKVLPMDYARNPQIHNCWVVTHG
>NC_008700.1|WP_011759725.1|1968632_1969796_+|NERD-domain-containing-protein
MRIFNWRLLGLCLLIVQPGWSLELTPASSEFSSAQYTQETCILIVSERDSLTPGSERYLELDDSFSRHCQLPIEQPRKSGLPSVAEAQPHLSSPTSKQLRAVPRLDIQTPTANDMSARSSRLGRDNITSIQPGDIDKPLLSITAHKTVGGKFREAYTDSGAQIYLWWLLVLPVLMLLYVFPRCSRDNARVRGAAGEQAIAALIKSHYRGERYGLFTNVLVPLADGGTTEVDLLLITQSHVLAIESKHYRGWIFGSSRARSWRQVLHGKHYAFQNPIHQNFGHCEALKKVLQVDKVHSLVVFGPDASFKTSLPQGVILLSGMLAYLNMLDAEPASLAKADVVRCIALAEELMLSSGEAAQRAHIDYVRSEYEVPLANNKSQMGLSARD
>NC_008700.1|WP_011759726.1|1969781_1970057_-|HU-family-DNA-binding-protein
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQVRNPKTGELMEVAGFNQPSFKPAPALKQLIAG
>NC_008700.1|WP_049757870.1|1970237_1971680_+|L,D-transpeptidase-family-protein
MNAPAGVIMARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKSLERDYLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPNDRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLPSTYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK
>NC_008700.1|WP_041409741.1|1971826_1972375_+|DUF882-domain-containing-protein
MTKFSPARRQLMLGLGSMAMFSVISSPAMASRSTQGSRMLSMFNRHTQEEGQGAYWVDGKYQKEILTDFDHLLRDHRANIAAPMDKRLYDLLFHLQENLKTKDTIHIISGYRSPQTNAMLAKKSGGVAKKSLHMEGKAIDIAIPGIRLDRLRDAAKELKLGGVGYYPQSGFVHVDVGRVRSW
>NC_008700.1|WP_011759729.1|1973021_1973309_+|50S-ribosomal-protein-L25
MSYTIPAQTRTEIGKGSSRRLRREGKVPAVIYGVGKEPVSIVFDHKDIINIQANDDFYTSVLTIVLDGKEVNVRAQAMQRHVFKPMIDHVDFVYA
>NC_008700.1|WP_011759730.1|1973504_1977398_-|translocation/assembly-module-TamB
MSQDMNQTTPSMGSDSPNTPKPVTKVLPWYHPWPLFKLVTRLVVYIPLLFLVLLALVLGTPFGARIAVSLAASLVPNFSASYVSGTINRDLALSDIRWSMDGIAVEGKALLVEWQPSCLLAKGLCVQNLSLDGLALVIETDKLPKGESEPAPATEKLILPFSISLDKAQLTSVDVRVDTMKFGADYLMAAAKWQEDGLKVDELQSRGLQVFIPIPGEADTGAQGSTITSDNTAMDSAAPTEGSWPLASLPTIALPMNLQLLKADLTDTHLAILGEDEVISRLLLGADFEGSALTLQELKLEHPEAELELKGTVDLSADYPMALKLNVNTHSPSRFPDIGEQQLQLDVNGNLSQLTLKVQAKGTLNFELDAGAALTNPEVPFTLTLSKANVGWPLQAPEYQGQELSVVASGNLNAQQASINGNVITPFHTPLLLNAVLSHQAQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDKLTPSALVLPEGVTLPKGSLDGAFETSGTFETRGTVKNQWQISLSQADIHGELAGFPVTLTGDVTVNEKLHLSAQDFLLTAMGAKLTLNGNVEDDWDLQGLILAPDLSLLAEGLNGKFMANLDVSGSNKDPLVNLQAQGEAIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRKLESVTLGAKGDINKQKLRAESFGDIRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGLSQDLHLTWELASNSGTLNEACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLPTNMDWKGKASLDAAVDWSPKRKPAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLSPETLTADLNLRSSRLATLDSRVEIAVTPDRALGGYIHLDRIQLEALREFLPQLDTLQGEISSELTLAGTLMSPEVSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDGKGGIEGSLAWPDGQFSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGGVAVSPDVVFDDSIAEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQAFKPPLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIREIKDEDLIAGVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAALSLSSSLSGGAIGNIGSTATSLVEKFGFSNVQLDTNDEGRVAISGYIGENLMVKYGVGVFNPGYEMTVRYYLLSQLYLETVSGTVGQSLDIYYSFDL
>NC_008700.1|WP_011759731.1|1977394_1979233_-|outer-membrane-protein-assembly-factor
MKVKFLYPLTAAALFGALPVSAANDPLLRINVSGVDEALEKNIRAHLGSLPESEVQRRAFLFNVQDSVDAALQSVGYYHGELNQNLIRHDKGPWELTLTVSPGEPTRIDWVDIRFAGEMLNDAAFDTWLDGVSLRPGQVLNHGNYENLKAELGAIALSRGYFDGKYTKAEIRVNRDENRATISLHFDSSARYRLGDVSFEGHTLDEGFLDRLIPFEHQSPYATRRLSALNSRLQETGYFRSTKVLPQLDKAENGEIPIKVELDNRPDHSIELGLGGDIGSSSDSTFEPRVRVTWRTPQINSHGHSQETSIEWSPDRPKFLTTYTIPLTHPLDDQLKLRLGLLRDKYGVTQVYEPEDLDFRNTGQLESSKQLLGVLRQQSLGDGWLMGYSLDFIRESYTQFDTDYSPSFLLAGFSLSNTVRGDATLDPKWGYRQSYSVDYADPSLGSATRLSRFQAKFKWIDTFFTKHRLVARADFGLNLVSDGDLALVPPSLRYFTGGDQSIRGYAFQEIGPYIEFTNDDGQIAREVIGGRYLAVGSLEYQYYLTPSWRLGSFVDAGNAFDKDKFEPVVSVGGGVHWISPIGPIKLDLGVGLTETDTLERSWRIHLTMGSEL
>NC_008700.1|WP_041409743.1|1979375_1980410_+|isoaspartyl-peptidase/L-asparaginase
MNKYPAIFTALFSLGVVMTPASAQENPFGIAIHGGAGTISKARLTDEQEQAYRDKLEEAVNAGHKILAKGGDSLDAVKAAINILEDSPLFNAGMGAVYTFDGTHELDASIMDGNTMNAGAVAGVKHIKNPIDLALVVMNKSDHVMLSGVGAEEFALTQGMPLVPANTFDTDSRYQQLLDAKAKINAAESAAKDFHASATSLDLDYKFGTVGAVALDKNGNLAAGTSTGGMTAKRFGRIGDSPVIGAGTYAENGVCAVSATGHGEYFIRYHVAADICARMKYQQKNVIQASDEVINQRLVEAGGSGGIIAIDAQGNVATPFNTEGMYRASRVNKDAPLIMIWRDK
>NC_008700.1|WP_011759733.1|1980495_1980912_+|CBS-domain-containing-protein
MDSIKVREHMDRQAVLLKPDMTLATAVELLLENKKNGAPVVDNDKHLVGFLSQQDCLATMLKSSYHCDLTATVADVMRTDVLQVSPDDSVLRLAEQMTGAKPKIYPVVDNGKVIGIINRTHVLAAMNVYMQQCYLAPA
>NC_008700.1|WP_011759734.1|1981025_1984895_+|ATP-dependent-RNA-helicase-HrpA
MSAARHSLSRAYLQQCYQSDVARIRRELRDIERLGDETAKAAAFERLAERAEAAKAKVDARLSARPRIHYPDNLPVSQKRDDIAEAIAKHQVVIVAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVATRVADELQSPLGEAVGFKVRFADAINENSYIKLMTDGILLAELSSDKYLNQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDVDRFSTHFDKAPVIEVSGRTYPVETRYRPLVKDDEPDLDLMDGIFEAVDELMAEGPGDILIFMNGEREIRDTAEQLSRRQYRDTEVLPLYARLSYGEQSKVFKSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYEETDFLSRPEFTDPEILRTNLASVILQMLAIGLGDIKGFPFIQPPDERHIKDGFLLLEELQAIKLKKGLPQMTPLGRKLAHVPLDPRLARMVIEAADRGALHEALVVTSALSIQDPRERPLEKKQAADEAHSRFADKDSDFVSLLNLWNYIKEQQKALSASQFRKLCKQEYLAYLRVREWQDLYTQVRQSVHELKLKLNSVPADYDSLHRALLSGLLSHVGFKDNNNEYLGARNRRFYVFPGSPLAKKGPKWIVAAELTETSRLFARGCAKIEPEWLEELAAHLIKKQHNEPQFEANQGAVVAFENQVLYGLTVVNRRKVQYGPINAIEAREIFIRSALAEGQLKTREAFFLHNQKLLEEVESLEHKSRRRDILVDEQVLFDFYNERLPEGIYNAPKLFSWWKEARRKQPELLNFNEDMLYARQTGHISKLDFPDVWHQGNLSFALSYHFEPGAEDDGVSVHIPVALLNQVEDSGFDFLVPGLREEKCIALIKSLPKSLRRNFVPAPDYARAAVQAMSLDLPLLESLSKQLLRMTGTRVSGEDFVLTELPKHLLMHFKIEDDHGKLVGEGRDLDALKASLQGVVAKAIRQVAKSGIEQAGLTEWSIDDLPAQFQRKKGNYEVKAFPALVDEKESVAVKLFDDEHQAQKAHAQGVRRLLLINIPSPVKHLQQALPNKAKLAMYFNPFGQVQLLIEDIIDAAVAQILDEQRLEVRTKAGFDVARDAVRADLNSVAEQISLKVEQILTLHNQIKKRLKGKISLDIAFAMSDIQTQLDRLVYKGFVADCGHARLSDIIRFLKAIEHRLEKLPVDPVRDKLQLLSIHKVEQALEAQLAKVPKSQPVPEHLLEARWLIEELRVSLFAQVLGTSVPISEKRVLLHIQQ

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Crispr_ID: NC_008700_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008700_4

3277998-3278102

Orphan

Consensus_repeat	Method
AGAGCAGCGATCGCGCCAATGCTGAAGGAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008700_4

>merge|NC_008700|4|3277998-3278102|CRISPRCasFinder
AGAGCAGCGATCGCGCCAATGCTGAAGGAAAACCACGTTATAACGCCCAGGGCAGTGAGCGTAACGGCTCCAAGAGCAGCGATCGCGCCAATGCTGAAGGAAAAC

>NC_008700|4|4|3277998-3278102|CRISPRCasFinder
AGAGCAGCGATCGCGCCAATGCTGAAGGAAAAC	CACGTTATAACGCCCAGGGCAGTGAGCGTAACGGCTCCA
AGAGCAGCGATCGCGCCAATGCTGAAGGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008700.1\|WP_041410486.1\|3275609_3276311_+\|tRNA(1)(Val)-(adenine(37)-N(6))-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NC_008700.1\|WP_011760857.1\|3287917_3288673_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|214866
NC_008700.1\|WP_041410489.1\|3278432_3279641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_008700.1\|WP_011760841.1\|3266586_3266994_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133397
NC_008700.1\|WP_011760843.1\|3268190_3269120_-\|DUF808-domain-containing-protein	unknown	unknown	gnl\|CDD\|377542
NC_008700.1\|WP_011760852.1\|3279640_3282844_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_008700.1\|WP_157608340.1\|3290522_3290927_-\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011760853.1\|3282977_3283616_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274936
NC_008700.1\|WP_011760845.1\|3270059_3271784_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NC_008700.1\|WP_041410484.1\|3272739_3273621_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NC_008700.1\|WP_011760859.1\|3289905_3290433_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_041409881.1\|3273767_3275105_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NC_008700.1\|WP_011760858.1\|3289077_3289896_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373118
NC_008700.1\|WP_011760840.1\|3265981_3266551_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NC_008700.1\|WP_011760856.1\|3287409_3287925_-\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011760846.1\|3271871_3272600_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NC_008700.1\|WP_011760855.1\|3285916_3287320_-\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011760842.1\|3267019_3268066_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NC_008700.1\|WP_011760844.1\|3269320_3269980_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_008700.1\|WP_011760854.1\|3283707_3285927_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635

Protein	Function_ID	Function_description	E-value
NC_008700.1\|WP_041410486.1\|3275609_3276311_+\|tRNA(1)(Val)-(adenine(37)-N(6))-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	9.40133e-58
NC_008700.1\|WP_011760857.1\|3287917_3288673_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|214866	smart00862, Trans_reg_C, Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.	8.1888e-11
NC_008700.1\|WP_041410489.1\|3278432_3279641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.86559e-38
NC_008700.1\|WP_011760841.1\|3266586_3266994_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133397	cd04769, HTH_MerR2, Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.21434e-48
NC_008700.1\|WP_011760843.1\|3268190_3269120_-\|DUF808-domain-containing-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	2.03543e-145
NC_008700.1\|WP_011760852.1\|3279640_3282844_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_008700.1\|WP_011760853.1\|3282977_3283616_+\|radical-SAM-protein	gnl\|CDD\|274936	TIGR04038, hypothetical_protein_MED92_00180, radical SAM protein, TatD family-associated. Members of this family are radical SAM proteins found in about 5 percent of microbial genomes. A portion occur as gene fusions with, or adjacent to, members of the TatD family of hydrolases (pfam01026). The TatD family may have several paralogs per genome, including TatD itself from E. coli (a soluble protein not actually part of the twin-arginine translocation complex), which appears to act in quality control for TAT, directing turnover of misfolded TAT substrates. The functions of TatD family hydrolases in general (other than TatD itself, which may be exceptional within its larger family), and of this radical SAM domain protein modeled here, are unknown.	6.04157e-119
NC_008700.1\|WP_011760845.1\|3270059_3271784_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NC_008700.1\|WP_041410484.1\|3272739_3273621_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.84786e-159
NC_008700.1\|WP_041409881.1\|3273767_3275105_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	2.54956e-146
NC_008700.1\|WP_011760858.1\|3289077_3289896_+\|hypothetical-protein	gnl\|CDD\|373118	pfam14537, Cytochrom_c3_2, Cytochrome c3.	0.000102516
NC_008700.1\|WP_011760840.1\|3265981_3266551_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	2.98608e-32
NC_008700.1\|WP_011760846.1\|3271871_3272600_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	2.01374e-92
NC_008700.1\|WP_011760842.1\|3267019_3268066_-\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	4.08202e-70
NC_008700.1\|WP_011760844.1\|3269320_3269980_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	7.95644e-137
NC_008700.1\|WP_011760854.1\|3283707_3285927_+\|PAS-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.39948e-07

>NC_008700.1|WP_041410486.1|3275609_3276311_+|tRNA(1)(Val)-(adenine(37)-N(6))-methyltransferase
MGFSFKAFHVDDFGCGMPVSTDAVLLGAWANLDGADAVLDLGAGSGLLALMAAQRCKAPITAIEIDPVAASACRSNFSASPWPDRINLIEADATDAEALAGKVFTHILCNPPYFETGPLSEKPGRAQARHTGSLGFLALCKLITTHLSTEGIASLVLPVESEQAFRQALTHLGLGIRQRVEVSTVEGKAPRRLLLAVSQGEDSYQHEHLAIRDVHGCYTEAMTALTRDFYLKL
>NC_008700.1|WP_041409881.1|3273767_3275105_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MGLLVQNKQMSFSDTLSLGFMTFAFFLGAGNLIFPPFAGMLAGENMPLAMMGFLVTAVGMPLVGLIAVAKTQGRVMAYLPAVAATALAVAIYIIIGPAFAAPRTGLVAFEIGAKPFLGDTSAVLALGSISLNVAQLIFTLGFFAVTMLLALFPGKLMDSVGKVLTPVLMVLLLSLAISVIMLPSGDTSAPVGDYASSPLIKGVIEGYNTMDTLASLMFGMLIIDLLRKKGVDAPADQTRALVRAAFIAASGLAFVYISLFFLGATAGDIAQGAENGGQILTRYVDREFGTLGALLLSTVVSLACLTTAVGLVSACSDYFNELFPRIKYRQFVILFSIICAVVANVGLTQLISVSIPVLVSVYPVVIALVAVTFMTQYLPNPKVSHRLVLAVALLFGAIDGLKAAGVNMESLSFMPLYAEGMAWLLPTAVTMVICLFIGKRAPAAA
>NC_008700.1|WP_041410484.1|3272739_3273621_-|site-specific-tyrosine-recombinase-XerD
MALIDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFLTAKGIGLLALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLPKSLPGSLSEAQVEQLLAEPSSDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHPRG
>NC_008700.1|WP_011760846.1|3271871_3272600_-|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKLTRTLTLLGSLALAPLVMAAPATPNDMLKQKIQSTLGLEVNSITASPVEGLYQAITNRGVLYITADGSKLIHGNIYDLNNQMNNLTEKALAGPRLDMLKEFESKMLVYKAKDEKHVVTVFTDITCGYCRKLHREMKDYNDLGITVRYLAYPRQGVPSPNADEMEAVWCAKDPHKAMDDAKAGKNISLAKCDADIAGQYNLGGSFGVNGTPAIVLEDGSMIPGYQPASALFDVLEQRAVKQ
>NC_008700.1|WP_011760845.1|3270059_3271784_-|single-stranded-DNA-specific-exonuclease-RecJ
MKYKLTRRETVDDSHLPNHLHPLIKQLLARRGVAGDDCEQELSRLLRPETMLGLDRAACLLADAAMASKRMLIVGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALAVEKGAEVLITVDNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFASKSIAGVGVAFYLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNRILVDAGLKRVRAGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVETLLCDDIMYARRMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQDDWHQGVIGILASRIKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIPKFGGHAMAAGLSLAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANLIRASGPWGQGFEEPLFDGHFRLLQQRLVGEKHLKMMVETECGRLMLDAIAFNVDLKLWPDATVRHVHLAYRLDVNEFRGNQSLQLLVEQIDAK
>NC_008700.1|WP_011760844.1|3269320_3269980_+|ribose-5-phosphate-isomerase-RpiA
MTQDEMKKAAAWAALKYVEKDSIVGVGTGSTVNHFIDALGTIKADIEGAVSSSEASTAKLKALGIPVYDLNSVDRLSVYVDGADEINGQMDMIKGGGAALTREKIVAAVADKFICIVDNTKEVAILGEFPLPVEVIPMARSYVARELVKLGGDPVYREGVVTDNGNVILDVHNMKIMEPKKLEAQINGIVGVVTNGLFAHRGADVLLVGTPDGVKTVTA
>NC_008700.1|WP_011760843.1|3268190_3269120_-|DUF808-domain-containing-protein
MAGASLLTLLDDIATILDDVSVMSKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWAVAKGSFLNKLILVPLALLISAFVPWLVTPLLMFGGLFLCFEGFEKLWHARAKHVPVEGEDAHEALVPKGMDPQEYEKQKVKGAIRTDFVLSAEIIAITLGVVAEQPFMTQVATLSIIAVLMTIGVYGLVAGIVKLDDLGLWLSRKSAALAKMVGNLLLAAAPKLMKLLSVVGTAAMFMVGGGILTHGIHVLHDGINAAAARVGAIEAIGPVLEFFTPSALNLLFGIVAGAVAVLVMTLIAKFKPAKAAN
>NC_008700.1|WP_011760842.1|3267019_3268066_-|nitronate-monooxygenase
MSRLLQGFLGTELPIIQAPMAGVQDSELTIAVCSAGGLGSLPCGMLSNEVLEAEVRRIQAATTAPFNLNFFCHRVSDYPDPIRRRWQSLLAPYFDELGVTASSGPARASRQPFSHDVADVIETARPAFVSFHFGLPDKALLQRVKSWGTRVLSSATTLDEALWLEANGADGIILQGLEAGGHRGMFLSMDLATQQPLHGLLALAKDKLTLPVIAAGGLGSATDINGALKAGADAVQIGTAYLLCSEAKTSAIHRRAIGEQPLQTQITTLFSGKPARGIVNRAMAELGAMHEAVPPFPFASIDMGLLRQAAEQLGKGDFSPLWCGQNTSGCRAIPAAEMTRRLAAGVMF
>NC_008700.1|WP_011760841.1|3266586_3266994_-|MerR-family-transcriptional-regulator
MGEGVQMYIGEAARVTGLTIKAIRFYEQKGLLPSPQRDGRYRVYSPQHLELLRLIRDAKALGVPLTKLMAVVPAKGDTLDWQQIRRFLEGIKQDIRAQQLRLEQQLATVDECLSAIDDCPGLGDYALDSALKRRL
>NC_008700.1|WP_011760840.1|3265981_3266551_-|NAD(P)H-dependent-oxidoreductase
MKNILIVNANPKADSLCKHLADIYEIEAREYHRVRRFNLSQMVFDTNLREGYGMQPLEPCLEDFQQALIWAGHLVIVSPIWWGSLPAAFKGLLDRSLLPGFAFRYDANNEAVIPLLQGKSARLMFTMDAPADFAEEQAASVVTQLDRFTLQFCGFSPASISYFPSASWVTAECLERWQQSIEVFGRQGE
>NC_008700.1|WP_041410489.1|3278432_3279641_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSTMLRRILPFIILALFILAAMVLMATKEAPEQKAEEANLPIIEVAEVKQETLSLNLPSYGVVMPRHKTQLVAEVQGRLTSVSPNFVAGGVVKAGDQLAVIEPSDYQADLMQAEASLAQATAALNEEIARGEVAKTEFKGYDKGVPPELGLRIPQLKKEQANVKYAEAALARAKRNLERTVIRAPFDGIVKARGVDLGQYVTLGTKLGELYDTSVAEIRLPLANADLAYLESVDNPDTEVTLTASLAGREVVWTGDIVRSEGVIDEGNRMVYLVAEIPDPYLRKHKTQGQLPLKYGTFVNAIIKGRTEDGIVRLDRHLVREGKVPVVRSDNTLELRDVNVVRSDLNYAYIKGSLKTGERVSLTNTGTLSTGQMVKIRGEETPDSTRDSEAPADERLAQAGDK
>NC_008700.1|WP_011760852.1|3279640_3282844_+|efflux-RND-transporter-permease-subunit
MDTHKGIIAWFARNSVAANLLMIVLLVGGLFSTQLINKEIFPSFELNLLRISVAYPGAAPQEIEEGINIKIEEAIQDVIGIKKLTSVASDGVGSITIEVENGVDAKTVLDEAKLRIDAISTFPANIEKPNIYQIKPENNVIWLSVYGDINAHEMKELAKNIRDEVAALPSVTRAQVAGARNYEIGIEVSENKLREYGLTFTQVAMAVQNSSLDLPGGAIRAKDGDILLRTKGQAYTGEDFSSIVVATSKDGSRIMLPDVATIKDDFEERLDYTRFNGKPAVIVEVLSVKDQDAVAIAKDVKDYIAERKLSLPAGAELDYWGDLTHYLNGRLNMMLSNMTMGALLVFVILALFLDLKLAFWVMVGIPVCFLGTLLLMPVEPFALSINMLTLFAFILVLGILVDDAIVIGESVHTEVERHGHNMDNVIRGAQKVAMPATFGVLTTIAAFIPMLMVDGPMGIIWKSIGMVVILCLAFSLVESKLILPAHLAHMKPNTKEPSGPLGRMKLRFNERVAHFIHHSYKAFLERAIHNRYNWLAGFTGVLILSIALVASGKVRWVFFPSIPSDFVQVNLQMEEGSSEDNTLKALQQIEDALYRMNGEMEQKYGEPVVKHSFFNMNSRTSAFIFAELTKGEDRELDGNAITDAWRDALPEMVGVKKLSMNATTNDAGGDVAFRLSSNDLEQLSLAAKELKTKLASYEGLYDIADNYSSGSHEIRLKIRPEAEALGLTLSDLARQVRYGFYGYEAQRILRNKEEVKVMVRYPLEQRRTVGHLENMLIRTPDGSAVPFANVAEIEVGDSYSAITRVDGRRAITITAAANKDKVEPGKVVAEIQKDFMPVLKQKYPHIDTSLDGQSQEEADAIWGLLQGLFFALFTIYALMAIPLKSYSQPMIIMSVIPFGMIGAIIGHLLLGLSLSVLSLCGIIALAGVVVNDSLILVDFVNRARAQGFALREAVVNAGCFRFRAIILTSLTTFFGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILVPLLYVILADFASIGRRLFNWWWQPGQGHNEHGAAAGQGTEQGASLTQSLEGAKHD
>NC_008700.1|WP_011760853.1|3282977_3283616_+|radical-SAM-protein
MNSMDATAAHHTSPNATLVYDIRHSRYLNITGRCTLRCGFCPKQQGSRQIHQYQLALDKQPGVDDLLPLLGDVDTFDEYVFCGYGEPTLNLPTLLGVARAIKSQGGRIRVNTDGLGNLFHKRNILPELADCVDALSVSLNAQDEFTYLKHCQPRLKGSWQAVNDFIRMAPAYIKRVEVSAIDGLPGVDIPACRALVEAAGCTFKHRKLDIMG
>NC_008700.1|WP_011760854.1|3283707_3285927_+|PAS-domain-containing-protein
MLKPNTGLSSLSSLLTDEQSVRWSHQRMLAIASQLAMLVISVVLVINVIITLGERRLQQEWATQRYSELQSVGTMIADKVTFQQFRTQTFARGELLRQYLDSGDESLKEKLLLQWTGLQKNMPELMGIALFNANGEFLFASTDIFGRQTLPPSLLGGARNMGGNEIYSSPMEFLSVNGELEPYMYQLAWLENPDQTVRGYLVTYNSMLRTLDMVKPALSATQQPMMMFDTQGLMYAGPSDAPLPRLPEGLSGSLRQSYPALWRQMAMSNFGQFHGDDATFVYLKVDLTTQYETRREYFLVSYIRNDDIASRFSQWQTILVIGAIILTLLAAAVVILTHLYRLEQRARHNSIQLAADLFTGEEGQLLVNDKGRVLSANPKAGSLLNLAANQLTDRSLQRCLQLDDENFEKIIATAKAKGEWRGEVSLDELPGAVLRVVLRYTRANTERQRYFLVSLNDISELAQSRREESLHRLLADSAVATALTRADGTLLKFNSAFEQLLEFNEPLGANLADILENDLGNQWPRITQMVAMQGSWQGQILCTNNASTCLQATLKGHLDDEGDIEYLVCTLEQASSRNRGRENSQLIPNRSTILANLEDLERYYDALGEQSRNHSCLMLMDISPAGMLSHMSDIGQLEKRQEEVETLLLKELPSNSQISQWQLGKLVVILPGTDSNAAHKYAVDALDSLNSLGLGEGISIGIAAHQSGQNLEAFISHAEIALKRAKQTGDQKICQAFTR
>NC_008700.1|WP_011760855.1|3285916_3287320_-|hypothetical-protein
MANIQLKQEDALSIKFSHQLGANDSCRLDLYFALPKEMGIGPESLDEEEYFHSAILGRRAYYSDGLHLPLVQSRFVSLNKRTMEEFRLYLNLFAYQFAVAMENDTKELLQLKTAEEFYPRLGELGEQVGAILKKFRRSEPTEPKWKPWFEHADNYLSWHCEQKLLQLMMHAPDIPAEDAEGPNTVREAVLSLCRAEALYRDSRHYNSEKTKSDHNRISNKMLLLRRLIQQGVVLKEELKPLGVGLKKFVTGLATGLVMLVVSALIIKAQGVFSGVTMSLLLTLAVIYGFREIFKEDIRNAMWRVIQRGRPRWSRLLRDTSSQKVVARQQVWLDFVRSKDLPLAVTEILSRRHQQNRLEAEYLHYGISTKVNDEGFLAGYDTLSEQVSFSLVPFVRYLERGKVKVFRETEEGICAETAERRYQINVVLVYREGRKAPRYARYKVTLNRSGIISVSEKSLPEQLLGVSG
>NC_008700.1|WP_011760856.1|3287409_3287925_-|hypothetical-protein
MTRAWIWSINLCILLLLLLALGTIFSLTRGAETTLLNCSSELYEPSDGAQAKQYLLVDLVTKGKRAQMHYRYFNLDGSLAGSISMEGELKTSAGAGNRYSIAIHSKEEKAAKNGAPNPMHMNYVSYVSGLNLSGKGLHEMELEILELDKARDYAIVLFQPSNTVCGCRLIH
>NC_008700.1|WP_011760857.1|3287917_3288673_-|helix-turn-helix-domain-containing-protein
MQLGNCWFDDAKGELINRASGDVWHLPRAEAQVLRLLLSQADRVVSKAELRQGDDEHGELSDSSVARAVFMIRSFLGPGSELLIETVKGQGYRLHLTPMTAPVPAKRRLPIRRLGPVPIWIPALLMLASLFAGGYFALRVGEMSPTAPLKVQSVVQADGQMVKLVLYAHSRSNNTLLLEKASELASVLGDCRHSRWREVFMSLSHDSRVLNLTLRGDYLGQAVVRNLKVSDGRSPRRFISPDWLREVDICD
>NC_008700.1|WP_011760858.1|3289077_3289896_+|hypothetical-protein
MKIDRRQALGQIIGLGSAAGLGLVSTSLMAATDENGNYQLALGEKLKYVPLDPMATAKLAYETGGGCMHQVFHATVTMLANSASVDADKFKSIPTALAGYGFAGVTGQGTLCGNLNAIGMLVNLLDDINGQNAAVIGAAFRWYENTKLPLDTAEFIAGIGSTAEKTELVVSSSVANSVLCHSSISNWSKASGKTFSQKGERCYRLSASMAYHLVELLNRAYKGEVISGIPEAKPSEEAQRCQTCHGSTETMGPAASVKTDMECTTCHTGHFN
>NC_008700.1|WP_011760859.1|3289905_3290433_+|hypothetical-protein
MKPRLIYPLLATLLLGACGSDNDPQEPITPEPPQPPVAEVVHVDEAETIALEVVSFEPLSGAVEFTLKNEAGLAITGASQYELIYFGLPPEENASNNAKAWKRWHVSQSFRCGEDASACEGVLTEADTKGRYLFEAQGLDWSQDAPEGTLSRYRLAITLQGAKASSDMQFVADAP
>NC_008700.1|WP_157608340.1|3290522_3290927_-|hypothetical-protein
MQIGEAHFTASTLTLEFTDGRRHTLTQAQGALLLMLGAERGRVVSRSSLRGALKQVGANERKLEREMRSLGMLMGPDWRYLLEEVGSEGYLLHSGMRPIARLFSRPVRGLSWLHCFALACLGMLAVLLVLLIWS

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Crispr_ID: NC_008700_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008700_5

3559694-3559797

Orphan

Consensus_repeat	Method
GGCGCTGCTGGTCTGAATCCCATCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008700_5

>merge|NC_008700|5|3559694-3559797|CRISPRCasFinder
GGCGCTGCTGGTCTGAATCCCATCATATTTTGTGACCATGTACGCCATTGCCATCGCGCTGCTATGGCCCTACGCCAGGGCGCTGCTGGTCTGAATCCCGTCAT

>NC_008700|5|5|3559694-3559797|CRISPRCasFinder
GGCGCTGCTGGTCTGAATCCCATCAT	ATTTTGTGACCATGTACGCCATTGCCATCGCGCTGCTATGGCCCTACGCCAG
GGCGCTGCTGGTCTGAATCCCGTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008700.1\|WP_011761087.1\|3549369_3550584_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NC_008700.1\|WP_157608354.1\|3560020_3561718_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_008700.1\|WP_011761089.1\|3553113_3553383_+\|chaperone-NapD	unknown	unknown	gnl\|CDD\|367731
NC_008700.1\|WP_011761092.1\|3556625_3557537_+\|quinol-dehydrogenase-ferredoxin-subunit-NapH	unknown	unknown	gnl\|CDD\|236535
NC_008700.1\|WP_011761105.1\|3571164_3572856_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|225186
NC_008700.1\|WP_011761091.1\|3555903_3556629_+\|ferredoxin-type-protein-NapG	unknown	unknown	gnl\|CDD\|236534
NC_008700.1\|WP_049757936.1\|3570561_3571023_+\|TIGR02444-family-protein	unknown	unknown	gnl\|CDD\|378196
NC_008700.1\|WP_011761100.1\|3566297_3567245_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NC_008700.1\|WP_011761085.1\|3547987_3548614_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NC_008700.1\|WP_011761090.1\|3553379_3555863_+\|nitrate-reductase-catalytic-subunit-NapA	unknown	unknown	gnl\|CDD\|237416
NC_008700.1\|WP_011761097.1\|3562174_3564217_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|274617
NC_008700.1\|WP_011761103.1\|3568612_3570520_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NC_008700.1\|WP_011761086.1\|3548615_3549380_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NC_008700.1\|WP_011761088.1\|3550583_3551951_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NC_008700.1\|WP_011761098.1\|3564614_3564992_+\|hypothetical-protein	unknown	unknown	unknown
NC_008700.1\|WP_011761102.1\|3568279_3568477_-\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|131496
NC_008700.1\|WP_011761093.1\|3557533_3557965_+\|nitrate-reductase-cytochrome-c-type-subunit	unknown	unknown	gnl\|CDD\|367715
NC_008700.1\|WP_011761094.1\|3558040_3558940_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NC_008700.1\|WP_011761101.1\|3567329_3568184_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_008700.1\|WP_083766422.1\|3565040_3566222_-\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|236866

Protein	Function_ID	Function_description	E-value
NC_008700.1\|WP_011761087.1\|3549369_3550584_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NC_008700.1\|WP_157608354.1\|3560020_3561718_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.37693e-57
NC_008700.1\|WP_011761089.1\|3553113_3553383_+\|chaperone-NapD	gnl\|CDD\|367731	pfam03927, NapD, NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.	4.5726e-26
NC_008700.1\|WP_011761092.1\|3556625_3557537_+\|quinol-dehydrogenase-ferredoxin-subunit-NapH	gnl\|CDD\|236535	PRK09477, napH, quinol dehydrogenase membrane component; Provisional.	2.24639e-164
NC_008700.1\|WP_011761105.1\|3571164_3572856_-\|FAD-binding-protein	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.07122e-57
NC_008700.1\|WP_011761091.1\|3555903_3556629_+\|ferredoxin-type-protein-NapG	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	9.52424e-148
NC_008700.1\|WP_049757936.1\|3570561_3571023_+\|TIGR02444-family-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	1.83562e-28
NC_008700.1\|WP_011761100.1\|3566297_3567245_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.94755e-77
NC_008700.1\|WP_011761085.1\|3547987_3548614_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.14595e-124
NC_008700.1\|WP_011761090.1\|3553379_3555863_+\|nitrate-reductase-catalytic-subunit-NapA	gnl\|CDD\|237416	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA.	0
NC_008700.1\|WP_011761097.1\|3562174_3564217_+\|cytochrome-c	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	2.7554e-21
NC_008700.1\|WP_011761103.1\|3568612_3570520_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NC_008700.1\|WP_011761086.1\|3548615_3549380_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.12085e-124
NC_008700.1\|WP_011761088.1\|3550583_3551951_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NC_008700.1\|WP_011761101.1\|3567329_3568184_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	5.59357e-62
NC_008700.1\|WP_011761102.1\|3568279_3568477_-\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|131496	TIGR02443, Hypothetical_protein_yheV., conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.	1.16023e-19
NC_008700.1\|WP_011761093.1\|3557533_3557965_+\|nitrate-reductase-cytochrome-c-type-subunit	gnl\|CDD\|367715	pfam03892, NapB, Nitrate reductase cytochrome c-type subunit (NapB). The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase.	5.02483e-55
NC_008700.1\|WP_011761094.1\|3558040_3558940_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	8.53924e-169
NC_008700.1\|WP_083766422.1\|3565040_3566222_-\|murein-transglycosylase-A	gnl\|CDD\|236866	PRK11162, mltA, murein transglycosylase A; Provisional.	0

>NC_008700.1|WP_011761094.1|3558040_3558940_-|LysR-family-transcriptional-regulator-ArgP
MLDYTNLKALAAVVEAGGFERGAKVLCITQSAVSQRIRQLEERIGQSLLIRSVPVTPTPAGKRLLRHYQQVALLESELGSELNAEDPGKPTQIAIAVNADSLATWFLPALSPLFARYGWLMKLIVDDESYTHNLLKNGDAVGCVTTTADPMAGCSSEFLGVMHYRCVATPDFVERFFGNGLTTSALSQAPAVIFSTKDRLHERFLSQHFSMPAKGFYQHTVPSSEGFLDAIVQHLGYGLVGHLQADKLIESGTLIDLCPGLGMDVALYWQHWNIKAKHTTIIYRALAAAARQSLRQQDA
>NC_008700.1|WP_011761093.1|3557533_3557965_+|nitrate-reductase-cytochrome-c-type-subunit
MKRVLTLAALFVAIAGCSGQNAPVNNEPVNVQSLAGSAQITDVRPADALPTYPKRGTAIERNYSEQPPLIPHKDDYAITLNKNGCLNCHSWDKAERMKATPVAKSHTVDAKGTLNGHNYFCTQCHVAQADNKTELVENTFSTK
>NC_008700.1|WP_011761092.1|3556625_3557537_+|quinol-dehydrogenase-ferredoxin-subunit-NapH
MSTAKVNQARFAEDAIRELGWWKAHRFLLLRRATQLTVLALFAIGPLLGLWLLKGNLSSSLLLDTIPMADPLVTLQLLTAGHVPEASLLIGAAIIGLFYALMGGRVFCSWVCPVNMVTDLAAYLRRRFALPRTPELPRQLRYFMLALVLLLPVVTGIAAWEWLNPVPVLYRAVLFGAGAGLGLLVAIFLADLLIVERLWCSHLCPSGALFALLGKLSPVKMTAVNAKDCNNCMDCFVVCPERQVLKPALKGANPMITDSDCTQCGRCIDVCAKGVFQYKNRFTFQDNPLQKSPRIAKKAENEQ
>NC_008700.1|WP_011761091.1|3555903_3556629_+|ferredoxin-type-protein-NapG
MMTRQQSKTQGINRRQFLATTARLSCAVALAGGGIATVAKSQPLGPQAIRPPGALAEQDFLSACVRCGLCVEACPYDTLKLARWFEQAPTGTPWFEARKVPCEMCDDIPCIKACPSGALEQALTDIDQAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERSRNERSGHHAMFIPVVNPDTCTGCGKCEHACVLDEAAIKVLPPHIAMGKTADHDTYFNTESTTLEMLNKGFEL
>NC_008700.1|WP_011761090.1|3553379_3555863_+|nitrate-reductase-catalytic-subunit-NapA
MSISRREFLKANAAVAAATAVGVTLPVKVVEAAEQKDNIKWDKAPCRFCGVGCSVLVGTRDGKVVATKGDPESPVNKGLNCIKGYFLSKIMYGKDRLDTPLLRMKDGKYDKNGEFTPVSWDVALDTMADKWKASLKAKGPTSVGMFGSGQWTIWEGYAAAKLHKAGFLTNNIDPNARHCMASAVGAFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWARLSDRRLSNPNGKVHVLSTFENRSFDLADNPMVFRPQTDMIILNFIANYIIQNKAVNKDFVSKHTNFALGVTDIGYGLRPDHPLEMKAKNPGNGKSTPISFDEYAKFVSTYTLEYASEMSGVPAERLVELAKAYADPSVKVMSLWTMGVNQHVRGVWTNNMIYNIHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFAHRLPADMVVANDKHRAITEKLWQLPEGTIPPKPGFHAVLQSRMLKDGKLNCYWTMCTNNMQAGPNINDEIYPGFRNPENFIVVSDPYPTVTAMAADLILPTAMWVEKEGAYGNAERRTHMWHQQVKAPEGAKSDLWQLMEFAKRFTVDEVWPAELLAKKPEYAGKTLYQVLFANGVIDKYPISDCKGELNDESEHFGFYVQKGIFEEYAAFGRGKAHDLAAFDDYHASRGLRWPVVDGKETLRRFVEGSDPYVKAGEGFKFYGKPDGKAVIFALPYEPAAEEPNDEYDLWMSTGRVLEHWHTASMTARVPELYRAYPDAQIFMHPEDAKARGLNRGDEVIVASPRGEVKTRVETKGRNKPPRGVVFMPFFDARQLVNKLLLDATDPLSKETDFKKCPVKVMKA
>NC_008700.1|WP_011761089.1|3553113_3553383_+|chaperone-NapD
MTQEYHVTSLVVHAAPSQANVISDAIDALPGAEVHATSPEGKLVVTLEGSTQRAILDNVEAINALNGVLSSSLIYHQSEQEQQVSEETP
>NC_008700.1|WP_011761088.1|3550583_3551951_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MADYSEAIITVKKGLDVPIAGAPRQEIDIAAKPSQLALLGKEYVGLKPSMLVEEGERVIKGQALFEDKSNPGVRFTAPCAGIVSAIHRGDKRLLLSVVIDCDGSDESIDFGVEANLAALSREQVQDKLLQSGLWTALRTRPFSRAPKPGSAPAGLFVTAVDTNPLAADPRIIINTDVDAFAAGMQVLTHLTDGPVFLCQDGNHELLPGAELPRVQTHRFQGVHPAGLVGTHIHMLMPVSMERQVWHIGYQDVMAVGRLFTTGQLDNRRIVSLAGPNVLKPRLIATVLGAKVSDLVKGELKDEVHSRVVSGSVLSGHTARGAFDFLGRFHPQISVVTEDDSEQFLPWVRLGRDKFSITRTVLSRFLPKKLYDMTTHTGGAKRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQLLGALELDEEDLALCTFVCPSKYDFGQELRACLTIIEREG
>NC_008700.1|WP_011761087.1|3549369_3550584_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MSKPTKKPSAQDAYYAPGHTMKDFFRSLFIGHGASTQDRVHVRDAIEVKRTMTLVGLCLLPAILFGIYNTGLQAQIAILAGSAPLDNWHQGFYSAIFGGLTESTGIFGLMAYGLIYYLPIYLAALVTTMFWEMVFARARRQEMQEGFFVTALLFSLCLPANISLWLVVMGISFGVVVAKELFGGMGYNFLNPALAGLAFIYFAYPSEVTTSAQLVAVDGYSSATTLAQVAANKMKFAEYPWYHAFNDAAWWDAFLGFEVGAIGETSALAIFAGGLLLILTRLADWRIVVGVLVGAIATSLLFNVFGDGKNAMAAMPWTWHLVTGGFALGMMFMATDPVTTAYTRPGKLMFGILVGAMTILIRVANVKQPEGIMLAILFANLWAPVLDSLVARFNIKRRLKRNGL
>NC_008700.1|WP_011761086.1|3548615_3549380_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAFNKDSVLGTMTFTVVLCLVCSFMITGTADVLKERKLVKKRNELMQNVLIAADIKDVSDVKATFEARVRPVMVNLATGELHERDNILDYDERMAAINPETSSKIAKDTARIKTRANEIRIFKVLDDKGELQALVLPVYGKGLWSIIYGFVGVKADFNTITGAVFYEHGETPGIGDFINHDDWLAKWQGKQIFNAKGDVAFKIVKGEAKAGDLSAVDGVSGATRTGAGVAKAVQFWFGPEGFEAALGKLKAAGV
>NC_008700.1|WP_011761085.1|3547987_3548614_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MSAVLSNRELLMRPVFANNPVAMQVLGVCSALAVSNSMQTALVMTLAVTFVLVCSNFFISLIRAFIPNSVRIIAQMTIIASLVIVVDMVLQDVAPDLSKQLSVFVSLIITNCIVMGRAEAFAMKEPPHLSVMDAIGNAAGYGFILLSVAFVRELLGSGTLFGHSILKTIEQGGWYLPNEMFKLPPSAFFLIGVIIWVVNIAQRKRAKA
>NC_008700.1|WP_157608354.1|3560020_3561718_+|diguanylate-cyclase
MLLLMCASASSLWASEPGQIADRTIEVGEGDVALTEFATGYFVDPSQQMSLAEVQLQDFIPGGSSITLGTNAKTTWSRLEVHNTASHSRRLFIHHPHAYHLQSINFYETRQNELLSQADIHLDRDESHPMMFGGSAVYAFDIAAGERKTIYIKNVTFSHQWYSLALYDEEHSKRALVGSGNYMALLVGMMLALMIYNFFLYLSARKVENVVYALYLISGTIWVGLSYGVAANFLGVYSAALLQLNSNLLSMPSFLVLFMMLIFETRRRYPREHLALSLMLTLLVADFIYSLFDVVGALKPASSLAAMMMVVTFGVSLSLWRKGEPLAKYFLLGHSMFIIFNMSAVFYYKGLSQANQINSHGVGIGILLEALMMAFILSYRIKTLEQLKAKQGELKRQANTDPMTHLFNRRYFDVTSPLLLTEAKATGAHWTLLIIDIDNFKSINDTYGHHVGDLVIIEFAAVLKQNQRPQDIACRFGGDEFVLLLNCNLDNATRIAERIRANTERLPITTQEGEKLHFTVSIGVHPVSSSADNMQEALQGADAALYESKGLGRNKVVSRLNGSAA
>NC_008700.1|WP_011761097.1|3562174_3564217_+|cytochrome-c
MRKFTSRKLAYLVALVLTGALAGCGDDGKDGADGAPGAPGTPGTPGTPGEPWSPPPVTTSTVTNLKVINYSFEEGAISYEFEITDENNNPINGLVNAQAKVAALTSKGFINNRDEADINGIADNVAIGGAATQATEGAVLTVIDDGHYKFSAPMKGVNAGTEGIVWLRVGGNDGIATSAPLVVNKPEGTHSTTTEACFSCHVDYSTSPRRHSSYVAQGMDGEVDFVEGCQVCHGQVSRNVVNEEGFSVGGYARNTLSKIGHINHQEFETGFSVMNCSSCHSEPTINVGLTGPGCIDCHDTGGIPGDIIPGNGADLRKLHEGKTAITSNKAINDSYKVTGTAPAWFPDSGLAGQWCTTLSLYKVDAQTGAETLVDLHELFDDTQTTHNPDKPINYVGSYLHGVYNDSVVGRITEAYDYSYDAEGRKTMCYAQSAGHGVPHVVGTTPDLSAWTGAGLMASLRVSFTAKDFTGAESDVVTIHGYTDVAAQADGAVTAYERRHNVDSESCTTCHNSEANFHKNGNFAEGGLGCVACHNNGQDRRAGGSGPGFGPMVHSKHWGVGSKSVDADGNEVSNAASAIAPETSCVACHADGAMDLNAIPNQFIKARAYGVSNKMASPVTANCYACHTKESALSHMKSMGGTISDDVPATGWYTLSTQESCAVCHNPGNSAGIEKYHKFTR
>NC_008700.1|WP_011761098.1|3564614_3564992_+|hypothetical-protein
MDRKFIISALCYAILGMCLGIYMAKSGVHGHRVTHAHIMLAGFVVSFIYGLCHKLWLPGAAGALVQGQFWLHQLGVLLMSAGLFLLYGQHIEVATIDPVLAISSFMLLLAMVLMLVLFLKTPQQT
>NC_008700.1|WP_083766422.1|3565040_3566222_-|murein-transglycosylase-A
MNGFAFVRDFWHGAAIFTGLEPKVKSAPFKSLSCVVLAAVISACASQPDRELGKRYLDGELQQPLNWVAAVQSDANRNYTRFADQSSLVLERSPRLASRYAPLYRQLSQWLESGGDPLSLGNFGIEAAQFGGADRQGHVLFTGYFSPVLEVRHSPDSRFQYPLYGVPDCVKHNSPCPSREAILQGALSGQGLELAYSDSLIDSFLMEVQGSGFVHYGDNDELQYLGYGGKNGHAYRSIGKVLIEQGEVAKEQMSLRAIKAWADSHSEDEVKQLLAHNASFVFFQARPNHDVLGSAGIPLLPMAAVAADKQLLPMGTPLLAEVPLLDDVGNWTGRHELRLLIALDTGGAVDGGHLDLYHGMGPEAGMAAGHYKHFGRVWRLGLGAGSSVTPGTP
>NC_008700.1|WP_011761100.1|3566297_3567245_+|threonylcarbamoyl-AMP-synthase
MAQITDQISLAVAALNRGELVAMPTETVYGLAADAGNADAVAKVFALKGRPATNPLIVHVADASWINDWASDVGQDAEALMAAFWPGPLTLVLPAKTYVSRAVTAGQNTVALRMPAHPQALALLKDFGRALVAPSANKYMSISPTSSDHVARQFAGDELLILEGGNCRVGLESTIVALLPGDEPRLLRPGMVSVASIEAVLGRPVAQQSGGVVAPGQHHKHYSPGLPCYRYGAESDVSHLLQANDIGWIFCGNAVPVAGKAIELGADPDAYAQGLYDALYQLDHETLSAIYIAEPPHSSEWQAVQNRLERAAKPR
>NC_008700.1|WP_011761101.1|3567329_3568184_-|pirin-family-protein
MKINTRLFSRPAMDGDGVNIRRVADFERLQLDPFLMVDEIRSDDKSDFIGGFPPHPHRGIETFTYIRKGGFEHRDHMGNVRAIRAGDVQWMSTGSGVIHSEMPLADASDGLHGFQIWLNMPAQDKMRPARYLDSTELTQQRYPSGRGADFYPLAGRWLFEGEAIDGLVQGLAANGAVADLSLAPGGRASLDLSERGFVGLYLYQGALHCEDGRSFFSGEYLVLQPGELELVATEEGAGMLLFAGEPIGEKIVHMGPFVMNTEAEIRQAIHDYQTGRFGSLELPK
>NC_008700.1|WP_011761102.1|3568279_3568477_-|YheV-family-putative-metal-binding-protein
MSISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIGVFKPD
>NC_008700.1|WP_011761103.1|3568612_3570520_+|ABC-transporter-ATP-binding-protein
MITLSQAQLIRGSKVLLDEANLTIYPGHKVGLVGANGTGKSSLLALIMGKLSLDKGDIQVPREWRIASVAQETPALEVSALEYVLDGDMEFRELEAALRKAETDNDGHAIADLHGKLDAIGGYSIRARAGALLAGLGFSEEKQSVSVKSFSGGWRMRLNLAQALLCRSELLLLDEPTNHLDLDTMFWLEDWIKSYPGTLVLISHDRDFIDAIVDEIVHVENQKLNFYKGNYSTFERTRAERMAQQQVAFERQQRERAHMQSFVDRFRYKASKAKQAQSRLKALEKMTELLPAKADSQFYMEFREPASLPNPLVAMENVSVGYGETPILGKVHLNLVPGARIGLLGRNGAGKSTLIKLLASELKPLTGKYEPNPGLTIGYFAQHQLEYLHMDDSPLMHLQRLAPSHREQELRDFLGGFGFNGDMALSPVAPFSGGEKARLVLALLVWQSPNLLLLDEPTNHLDLEMRHALTLALQTFEGAMVIVSHDRHLLRLTCNDYYLVDAGQVSSFEGDLEDYHQWLLDAAKAAAAKASDNDAERPAQDKKQQKRLEAELRQKLSPLRKQQTKLEDEQHKIASRLALIEERLADTSLYEAQNKAELTKILAERTTLGQQQEESEMAWLELQEQIDVIEQAAQL
>NC_008700.1|WP_049757936.1|3570561_3571023_+|TIGR02444-family-protein
MRSLPLISEEVFTRELWQACEAHYSLHESLCLSLQDDCQINVNLLLLASELDRRGTGLNQSQWQMLIVEVAAWDERLIGPYRRLRQLAKNSLSEDEYRQMLDVELMMERKVQNLLLHRLNQLPTSQGEADNLMLLLAEFGLDIEVAAALIHQD
>NC_008700.1|WP_011761105.1|3571164_3572856_-|FAD-binding-protein
MAIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVIMVEKGPLRSSRDFDMEERTAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRTPPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAFEPNRNNGMLRRGCEQLGWDYTVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVFGIWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTVLSGAVFDEAINGHSGAPQSIYSDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSHAELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLDYPLTEPFWRAARAAFASMAELQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKTMVDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAPDAAPKADFVTETAAQTISAAAQP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1225673 : 1234498

Staphylococcus_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041409687.1\|1225673_1226780_-	metallophosphoesterase	A0A1V0SLL4	Klosneuvirus	2.0e-15	29.6
WP_011759129.1\|1227103_1228771_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.2e-41	29.0
WP_011759130.1\|1229014_1230268_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.9e-103	55.5
WP_011759131.1\|1230371_1230821_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011759132.1\|1230842_1231979_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-56	36.8
WP_011759133.1\|1232016_1232670_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-26	32.1
WP_011759134.1\|1232781_1233888_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-67	39.5
WP_011759135.1\|1234021_1234498_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.8e-32	51.3

DBSCAN-SWA_2

1255110 : 1269855

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011759152.1\|1255110_1256406_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.1e-134	60.3
WP_011759153.1\|1256587_1256905_+	cell division protein FtsB	NA	NA	NA	NA
WP_011759154.1\|1256901_1257618_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011759155.1\|1257627_1258110_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011759156.1\|1258106_1259189_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011759157.1\|1259169_1259916_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-71	53.9
WP_011759158.1\|1259912_1260548_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.9e-34	49.4
WP_011759159.1\|1260577_1261468_+	peptidoglycan DD-metalloendopeptidase family protein	A0A141HSE6	Bacillus_phage	7.4e-05	48.3
WP_011759160.1\|1261551_1262535_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.4e-36	35.4
WP_011759161.1\|1262650_1265215_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.4e-32	25.4
WP_011759162.1\|1265501_1266569_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.0e-114	62.2
WP_011759163.1\|1266580_1267018_+	regulatory protein RecX	NA	NA	NA	NA
WP_041410151.1\|1267233_1269855_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.4e-83	40.0

DBSCAN-SWA_3

1579902 : 1586622

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011759409.1\|1579902_1581117_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	8.8e-33	31.5
WP_011759410.1\|1581147_1581531_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.2e-54	79.8
WP_011759411.1\|1581543_1581867_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-22	45.8
WP_011759412.1\|1581876_1582401_+	co-chaperone HscB	NA	NA	NA	NA
WP_011759413.1\|1582455_1584315_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.3e-101	39.4
WP_011759414.1\|1584323_1584659_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011759415.1\|1584816_1585722_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	4.5e-42	34.2
WP_011759417.1\|1586190_1586622_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	5.7e-19	42.4

DBSCAN-SWA_4

2165957 : 2174736

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011759885.1\|2165957_2168744_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.0e-84	49.6
WP_011759886.1\|2168819_2169431_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_049757994.1\|2169493_2170771_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-73	37.7
WP_011759888.1\|2170763_2171138_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	3.3e-07	38.6
WP_011759889.1\|2171155_2172442_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-100	45.3
WP_011759891.1\|2172645_2172984_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.3e-25	47.7
WP_011759892.1\|2172977_2173271_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_011759893.1\|2173270_2173627_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_041410310.1\|2173636_2174026_-	sulfurtransferase complex subunit TusD	NA	NA	NA	NA
WP_011759895.1\|2174079_2174736_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	5.6e-34	43.5

DBSCAN-SWA_5

2699038 : 2706219

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011760348.1\|2699038_2700043_-	NAD-dependent epimerase	A0A1V0SKV4	Klosneuvirus	1.0e-26	29.6
WP_011760349.1\|2700083_2701442_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	5.0e-77	36.0
WP_011760350.1\|2701548_2702079_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	4.8e-44	46.4
WP_157608326.1\|2702368_2703277_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	2.1e-39	37.1
WP_011760353.1\|2703744_2704662_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.6e-106	66.6
WP_011760354.1\|2704666_2705032_-	four helix bundle protein	NA	NA	NA	NA
WP_011760355.1\|2705085_2706219_-	NAD-dependent epimerase/dehydratase family protein	A0A1D7XFE8	Escherichia_phage	1.1e-88	45.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008700

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection