CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008709	Psychromonas ingrahamii 37, complete genome	24 crisprs	DEDDh,cas3,cas14j,cas8f,cas5f,cas7f,cas6f,cas6e,cse2gr11,cas7,cas5,cas8e,cas1,cas2,DinG,WYL,csa3	1	24	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008709_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_1

71338-71495

Orphan

Consensus_repeat	Method
GTTAATTAATGGAATGGGTATTATGTTATCGGTAGGGTGCATTCTATACACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_1

>merge|NC_008709|1|71338-71495|CRISPRCasFinder
GTTAATTAATGGAATGGGTATTATGTTATCGGTAGGGTGCATTCTATACACCACAAGTAGCGGTAATCGGTGCGCGGAGCACACCCTACGAACTTTGTTCAAGAGGTTAATTAATGGAATGGGTATTATGTTATCGGTAGGGTGCATTCTATGCACCA

>NC_008709|1|1|71338-71495|CRISPRCasFinder
GTTAATTAATGGAATGGGTATTATGTTATCGGTAGGGTGCATTCTATACACCA	CAAGTAGCGGTAATCGGTGCGCGGAGCACACCCTACGAACTTTGTTCAAGAG
GTTAATTAATGGAATGGGTATTATGTTATCGGTAGGGTGCATTCTATGCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_041765684.1\|61566_61800_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011768485.1\|74598_75579_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011768478.1\|65288_66059_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_008709.1\|WP_011768479.1\|66313_67786_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_008709.1\|WP_011768492.1\|80293_80896_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NC_008709.1\|WP_086004599.1\|79800_80259_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NC_008709.1\|WP_011768489.1\|77683_78361_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|178801
NC_008709.1\|WP_011768490.1\|78568_79804_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NC_008709.1\|WP_011768477.1\|63116_64823_+\|GlyGly-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|274611
NC_008709.1\|WP_011768476.1\|61850_62336_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_008709.1\|WP_011768483.1\|71682_72420_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_008709.1\|WP_011768487.1\|77145_77301_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NC_008709.1\|WP_157035272.1\|60769_60949_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227854
NC_008709.1\|WP_011768480.1\|68053_69061_+\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
NC_008709.1\|WP_011768481.1\|69102_69942_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226905
NC_008709.1\|WP_011768475.1\|61093_61411_+\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NC_008709.1\|WP_086004613.1\|70047_70944_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182276
NC_008709.1\|WP_011768486.1\|76030_76843_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NC_008709.1\|WP_011768488.1\|77312_77549_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NC_008709.1\|WP_157035412.1\|72648_74052_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181078

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011768478.1\|65288_66059_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9318e-129
NC_008709.1\|WP_011768479.1\|66313_67786_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.17258e-115
NC_008709.1\|WP_011768492.1\|80293_80896_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.08698e-112
NC_008709.1\|WP_086004599.1\|79800_80259_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	9.94976e-100
NC_008709.1\|WP_011768489.1\|77683_78361_-\|JAB-domain-containing-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	6.8206e-113
NC_008709.1\|WP_011768490.1\|78568_79804_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NC_008709.1\|WP_011768477.1\|63116_64823_+\|GlyGly-CTERM-sorting-domain-containing-protein	gnl\|CDD\|274611	TIGR03501, secreted_trypsin-like_serine_protease, GlyGly-CTERM domain. This homology domain, GlyGly-CTERM, shares a species distribution with rhombosortase (TIGR03902), a subfamily of rhomboid-like intramembrane serine proteases. It is probably a recognition sequence for protein sorting and then cleavage by rhombosortase. Shewanella species have the largest number of target proteins per genome, up to thirteen. The domain occurs at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system. For this reason, the putative processing enzyme is designated rhombosortase.	4.6941e-07
NC_008709.1\|WP_011768476.1\|61850_62336_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	6.08312e-86
NC_008709.1\|WP_011768483.1\|71682_72420_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	9.86656e-15
NC_008709.1\|WP_011768487.1\|77145_77301_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	1.4159e-19
NC_008709.1\|WP_157035272.1\|60769_60949_-\|hypothetical-protein	gnl\|CDD\|227854	COG5567, COG5567, Predicted small periplasmic lipoprotein [Cell motility and secretion].	0.00176193
NC_008709.1\|WP_011768480.1\|68053_69061_+\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	1.27921e-112
NC_008709.1\|WP_011768481.1\|69102_69942_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226905	COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism].	4.16773e-121
NC_008709.1\|WP_011768475.1\|61093_61411_+\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	2.68056e-46
NC_008709.1\|WP_086004613.1\|70047_70944_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	1.48504e-86
NC_008709.1\|WP_011768486.1\|76030_76843_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.0145e-152
NC_008709.1\|WP_011768488.1\|77312_77549_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.16729e-35
NC_008709.1\|WP_157035412.1\|72648_74052_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181078	PRK07678, PRK07678, aminotransferase; Validated.	2.02321e-165

>NC_008709.1|WP_086004613.1|70047_70944_+|ABC-transporter-permease-subunit
MVDTKEERATAAAAVSFLDKIELKIKKLTAPSAVPSGEYFGTPGVGDSRLISVCSTIFFIAIWAIATEGGFIKPIFLPSPFDVVERLIDITVDGFAGATLLEHLNASLVRIFGAFILACLIGIPLGITIGCNRVFRGIFDPLIEFYRPLPPLAYLPLIIIWLGIDESSKVTLIFLAMLAPIVLSARAGVTSVRIEQIQVAYSMGASPWQVVTQVIARGAMPDIMTGMRIAIGFGWTTLVAAEMVAAEQGIGFMVLNASEFLVTDVVIAGILVIGIIAYCFDLLMRYLEAKLIPWKGYN
>NC_008709.1|WP_011768481.1|69102_69942_+|ATP-binding-cassette-domain-containing-protein
MNTLKICDVSVVYPGSEGGESVAALSNVNLAMEQGDLVVALGASGCGKTTLLNLIAGFISPTKGYLTLGNSTVKGYPRVVCGQDIGDEITGPDAGRGVVFQKHALLPWLNVIENTALGLKLQGMDKIARRQRAAEYLKLVGLEDFHQHKIYQLSGGMQQRVGIARALANDPKMLLLDEPLGALDALTRESLQELLLDVWRETNKMMFFITHSVDEALLLATRLVVMSPRPGRITHQFDLDFNKQFLDCRDARKVKSSPEFIAMRDQVLAIIHGDELAIA
>NC_008709.1|WP_011768480.1|68053_69061_+|taurine-ABC-transporter-substrate-binding-protein
MKKCKPLKIMAAMAGLFFASTLAAKDVTIGYMGMNNPWKHAINEKLIEKETGYKVDWRRFYSGSKVITAMASGSIDIASAGSSPIAAAVSHGIEIELVWILENIADAEALVVRNGAGITSPSDLKGKRIAVPFVSTTHFHTLFALEQFGLSDEDVRLINMQPNTIGAAWERGDIDGAFIWDPVLGKIKKDGKVLITSRTLSSWGKPTFDGLVVDKKFGKENADFMAKVLKIAADLDQEYRSNKESFDATHPIAKSISKISGSDVNDVAGVLDLYEFPDFATQLSCNWLGCGMEGGAAKSLKSTSEFLKKGKKINDLMPDYSVFVNPEYALAASKL
>NC_008709.1|WP_011768479.1|66313_67786_-|PLP-dependent-aminotransferase-family-protein
MADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYESLVDEGYLVARERCGFFVDPDLSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNKDENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLHEWVEGFIDMDDPQLVSQIRQQILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPVKALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDYESEVNFIEKPLPALKSFDQDGRVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHYRHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQGIERHLGDCEIHSTAGSFCFWIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAILGELINTLKNK
>NC_008709.1|WP_011768478.1|65288_66059_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNTKLMPTVLITGATSGFGLATAKKFAQHGYPLIITGRRKERLQKLSDQLSPITDVFFYQLDVRDSEAIKTFTQAIPDNFKQVSILVNNAGLALGTESADKASLDDWHTMIDTNVTGLVNVTHSLLPILRKQASASIINLASIAANWSYPGSHVYGASKAFVAQFSRNLRSDFAGTGVRVTSLEPGLSESEFSLVRFKGDKEKYQQIYNNADALQPEDIANIIFWIAEQPAHININSIEVMPTSQAWDNFKIIKHP
>NC_008709.1|WP_011768477.1|63116_64823_+|GlyGly-CTERM-sorting-domain-containing-protein
MKKIITKMLVVTAITGIFSPLAVAGTTTVTRQTHSVEGLVGVTASQTSNSISYTLGDNYSVGDEITFTFPVGALTPQNFPPNISSANLDLTLVSNDGSSILYQVDTVTGNSSGDVIALGQATINSTFLSSNRITVTVSSQHLGAAFDAAGTRSSTVAEAKSQFGTVSINPTFDNTIANDNENDPDGGTFFASADDTITFSVTNPAITGWLNIATVNSTQVTLSGEAGKMAGFSASNFSTAGTKTLTENEAKLDISYTGLITTDTITFTPDTAPLLAQTFKMDVIYNYQSAGAVSGSKKVGNQVTAGAWTLSYPNVANASVVFNHHSNTFNGAYCDIDNVFDAGETSMLTVTLPDADWGSVSSIIATVESAADITFANEGIINFVDGTLSAGLEMTLNTAGTNEQIDIVVSFTSNDANLALPQPITSTMKVNFDYEGATPTVVADSGECVNRKPVLGDVTGSGSIVERAEVTLTAQAIDHDFDNLTYTWLQTAGKTLDVDSTSATLIFNAPAVENNETYTFSVIANDGHLSSDAKEVSFTVTPSNSGGGSMGLFSLLLLPLCFLRRKKR
>NC_008709.1|WP_011768476.1|61850_62336_+|pantetheine-phosphate-adenylyltransferase
MKTVVFPGSFDPVTLGHIDLITRASKLAERVVIAVAVNTSKRTLFNLNERCDLLSEATAHLSGIEVIPFSGLLADFAKEHNAQALIRGIRGTTDADYELQLAQVNKALNSELETILLPANAATGFISSTVVKEVFKHNGDIDPFAPPCVKQALLIKHSENS
>NC_008709.1|WP_041765684.1|61566_61800_+|hypothetical-protein
MFKLLFVYPVVALIIFWLASDTEVGASVYVLEDNYIKLEFPKESLRSADNPDPWYSLYWNAGSAREGLNKINDAVVK
>NC_008709.1|WP_011768475.1|61093_61411_+|iron-donor-protein-CyaY
MNDSEFIQLADQLYQKIEEKIEESGADVDYDQNGSLLTLEFENHTKLIINRQQPLHQVWLATLENGHHYDYNNGKWIDDRSGDEFLTFLSAAIFKQSKETVDFTE
>NC_008709.1|WP_157035272.1|60769_60949_-|hypothetical-protein
MKNINLFITALFFAGVLAGCGKTGPLYRTPEPATAVKQQNVQSSPEIADSDTTKINASE
>NC_008709.1|WP_011768483.1|71682_72420_-|sulfite-exporter-TauE/SafE-family-protein
MEQIWLLIPVVIFAAVVRGFSGFGFAAIAVVGFNVFLAPQQSVAIVLSLDLICSMNLWRQALKQADFTTLKRLVCGSLLGIPLGYALLMLMPTEILKILICITILFFCVLLLSEYRPFNTDKTGTKIGFGLASGAGTASASVGGPMIVYYMLSSNLSTSSQRATMILFFIASEAFTIIALIAGGVVDSTLPNALLILVIPTLFSVHFGQYLFNRKPPQSLKSFALPVLIAVALFGIINATLTLLR
>NC_008709.1|WP_157035412.1|72648_74052_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MALPASEIIEKDRNHVWHHLSQHSVLKHQDPLVMVKGVGSRVWDAKGNSYLDASSGGVWCVNVGYGRTEIADAIRDQVLKLNFFASTAGTAPAAEFAEKLLEKMPGMSRVYYASSGSEANEKAFKIVRQIAQQKHGGKKHKILYRDRDYHGTTIAALSATGQEERRMHYGPFVPGFVEFPHCCEYRSQFGDVSNYGVLAANELEKVILREGPDTVGAVVFESITAGGGVITPPEGYWPAVMEICKKYNVLIHMDEVVCGMGRTGKWFGYQHYGIKPDIVTLAKGIASSYAPISCVVTTEALFDEFIADSSDRAAYFRDVSTYAGCTAGPAAALANLQILERENLVNNSAQMGDYLLKQLVTLKDKYSVIGDVRGKGLLLGIELISDSKTKKPVAEEVAIKIAGMCMKKGLIIGRTNRSFTHFNNTLCLCPVLTLTQKEADFIVATLDAVFRELLESVDLLSSTLVES
>NC_008709.1|WP_011768485.1|74598_75579_-|hypothetical-protein
MMAQPRKTIVSLDDTPYYHCCSRVVRKAFLCGIDSTTGENYEHRRVWVDARIIELATIFAIDICSYAVMSNHLHVVLKVNADKAVNWSDKAVLVQWHKGFKGTLLTQKFVKGEDLSTFELKTVNECITEYRHRLIDISWFMRSLSEPIARQANKEDSCTGRFWEGRFKSQALLDETAVLACMAYVDLNPIRAKMATTPETSDHTSIQRRIHSAIKGEQPAELLPFVGDECLNMPDGLMFSVKDYIALVEDTGRIIREDKRGAISSNSQDILNRLNIPADNWLKITIEFGHLFKGAVGALPALTEYCEHLDRKRRHGAANCQRWLCG
>NC_008709.1|WP_011768486.1|76030_76843_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETSRKGISPHLINKSVQNVVLRHTQLRWKIPQDLLSDIKDKILLSIDRRAKYLLFNFTSGTLLIHLGMSGSLRICPLNSPPKKHDHADLIFADCLLRYTDPRRFGAILWLGLTPEDSPLLNKLGPEPLNDDFNAKYLYQQATKRKLPVKQFIMDQKVVTGVGNIYATEALFNSGISPIRAAGNISEKRYQILVTEIKEILQQAIKQGGTTLKDFVGSDGKPGYFQQTLQVYGKTGQQCPSCETPLKAVKLAARASVYCPECQS
>NC_008709.1|WP_011768487.1|77145_77301_-|50S-ribosomal-protein-L33
MRDKIRLNSSAGTGHFYTTDKNKKTMPEKFEIKKFDPVVRKHVMYKEGKIK
>NC_008709.1|WP_011768488.1|77312_77549_-|50S-ribosomal-protein-L28
MSRVCQVTGKRPAVGNNVSHAKNRTRRRFLPNLQTHRFWVESENRFVKLRLTTKGMRIIDKKGIDSVLTDIRAKGEKV
>NC_008709.1|WP_011768489.1|77683_78361_-|JAB-domain-containing-protein
MTKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHALFAASESDFCEKKGLGQAKYVQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHNLPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQKVLSENAAAIILVHNHPSGDPSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI
>NC_008709.1|WP_011768490.1|78568_79804_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSEHHILSGKKILLGIAGGIAAYKCAELTRRLKDQGADVRIVMTSSAKAFITPLTMQAVSGHAVADDLLDPNAESGMGHIELARWADLVLLAPATANLIARLRAGMADDLLTTLCVATSSPIAVSPAMNQQMYLAQATQDNISVLKQRGVMIWGPGQGAQACGDIGPGRMLNPADLVEKVMDYFSDKNSYFTGVNITITAGPTQEALDPVRYISNHSSGKMGFALAEVAQKIGANVTLISGPVQLSTPNGVTRLNVTSALEMHQASLSGLKNCDIFIACAAVADYRAETVAEQKMKKQPGIDELTIKLVKNPDIIKDVSNHQNRPFCVAFAAETQHLEVYAKDKLKRKNVDLIAANDVAKNGQGFNSEKNALSVFSSEERFDITLADKKAVASQLLKIISQQYALKNKGFK
>NC_008709.1|WP_086004599.1|79800_80259_+|dUTP-diphosphatase
MMKQIELKILDPRIGKEFPLPEHATAGSAGMDLRACIDQALIIKPGETQLIPTGIAIHISDPGLAATILPRSGLGHKHGIVLGNLVGLIDSDYQGPLMVSCWNRSTESFRLEPGERLAQLVFLPVVQATFEIVDEFKSSERGEGGFGHSGKH
>NC_008709.1|WP_011768492.1|80293_80896_+|nucleoid-occlusion-factor-SlmA
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIDYIESTIFTQINLIKEQQKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENERLQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVANLLLAYVEGRMSQFVRSQFKQKPTQYFNTQWPFLYRQLQQS

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Crispr_ID: NC_008709_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_2

89251-89379

Orphan

Consensus_repeat	Method
AGCTTATGTAAATGACATATAAAAATTTAAATAACCTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_2

>merge|NC_008709|2|89251-89379|CRISPRCasFinder
AGCTTATGTAAATGACATATAAAAATTTAAATAACCTAAAAAATACAGCTGCAAACACAACCCTAAGGTAGTGCTATTGAATACTTGCAGCTTATGTAAATGACATATAAAAATTTAATTAACCTAAAA

>NC_008709|2|2|89251-89379|CRISPRCasFinder
AGCTTATGTAAATGACATATAAAAATTTAAATAACCTAAAA	AATACAGCTGCAAACACAACCCTAAGGTAGTGCTATTGAATACTTGC
AGCTTATGTAAATGACATATAAAAATTTAATTAACCTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011768509.1\|102476_103535_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
NC_008709.1\|WP_011768506.1\|100831_101341_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NC_008709.1\|WP_011768495.1\|84138_85116_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NC_008709.1\|WP_011768508.1\|101957_102431_-\|DUF494-domain-containing-protein	unknown	unknown	gnl\|CDD\|377328
NC_008709.1\|WP_011768492.1\|80293_80896_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NC_008709.1\|WP_011768498.1\|88100_88682_+\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|131985
NC_008709.1\|WP_011768500.1\|89412_90420_+\|sigma-E-factor-regulatory-protein-RseB	unknown	unknown	gnl\|CDD\|236525
NC_008709.1\|WP_011768501.1\|90423_90873_+\|SoxR-reducing-system-RseC-family-protein	unknown	unknown	gnl\|CDD\|377263
NC_008709.1\|WP_011768499.1\|88694_89228_+\|anti-sigma-E-protein,-RseA	unknown	unknown	gnl\|CDD\|367705
NC_008709.1\|WP_041765694.1\|85779_86232_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011768494.1\|81339_83925_-\|class-I-adenylate-cyclase	unknown	unknown	gnl\|CDD\|236522
NC_008709.1\|WP_011768493.1\|80965_81256_-\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NC_008709.1\|WP_011768496.1\|85556_85808_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|225489
NC_008709.1\|WP_011768504.1\|99339_100158_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_008709.1\|WP_011768502.1\|97661_98561_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_008709.1\|WP_011768507.1\|101392_101956_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235778
NC_008709.1\|WP_011768503.1\|98919_99183_-\|YihD-family-protein	unknown	unknown	gnl\|CDD\|368826
NC_008709.1\|WP_011768497.1\|86238_87870_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236374
NC_008709.1\|WP_086004599.1\|79800_80259_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NC_008709.1\|WP_011768505.1\|100250_100826_-\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	unknown	unknown	gnl\|CDD\|182603

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011768509.1\|102476_103535_-\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	6.50543e-127
NC_008709.1\|WP_011768506.1\|100831_101341_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	3.13957e-75
NC_008709.1\|WP_011768495.1\|84138_85116_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	7.57432e-100
NC_008709.1\|WP_011768508.1\|101957_102431_-\|DUF494-domain-containing-protein	gnl\|CDD\|377328	pfam04361, DUF494, Protein of unknown function (DUF494). Members of this family of uncharacterized proteins are often named Smg.	3.19456e-63
NC_008709.1\|WP_011768502.1\|97661_98561_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.05711e-99
NC_008709.1\|WP_011768492.1\|80293_80896_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.08698e-112
NC_008709.1\|WP_011768498.1\|88100_88682_+\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|131985	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.	2.32313e-91
NC_008709.1\|WP_011768500.1\|89412_90420_+\|sigma-E-factor-regulatory-protein-RseB	gnl\|CDD\|236525	PRK09455, rseB, anti-sigma E factor; Provisional.	4.57084e-73
NC_008709.1\|WP_011768504.1\|99339_100158_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	8.28471e-129
NC_008709.1\|WP_011768501.1\|90423_90873_+\|SoxR-reducing-system-RseC-family-protein	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	2.15416e-28
NC_008709.1\|WP_011768494.1\|81339_83925_-\|class-I-adenylate-cyclase	gnl\|CDD\|236522	PRK09450, cyaA, class I adenylate cyclase.	0
NC_008709.1\|WP_011768493.1\|80965_81256_-\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	5.71602e-68
NC_008709.1\|WP_011768496.1\|85556_85808_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	2.17701e-27
NC_008709.1\|WP_011768497.1\|86238_87870_-\|L-aspartate-oxidase	gnl\|CDD\|236374	PRK09077, PRK09077, L-aspartate oxidase; Provisional.	0
NC_008709.1\|WP_011768507.1\|101392_101956_-\|hypothetical-protein	gnl\|CDD\|235778	PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated.	3.554e-29
NC_008709.1\|WP_011768503.1\|98919_99183_-\|YihD-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	9.93028e-44
NC_008709.1\|WP_011768499.1\|88694_89228_+\|anti-sigma-E-protein,-RseA	gnl\|CDD\|367705	pfam03872, RseA_N, Anti sigma-E protein RseA, N-terminal domain. Sigma-E is important for the induction of proteins involved in heat shock response. RseA binds sigma-E via its N-terminal domain, sequestering sigma-E and preventing transcription from heat-shock promoters. The C-terminal domain is located in the periplasm, and may interact with other protein that signal periplasmic stress.	5.33044e-20
NC_008709.1\|WP_086004599.1\|79800_80259_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	9.94976e-100
NC_008709.1\|WP_011768505.1\|100250_100826_-\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	1.42251e-67

>NC_008709.1|WP_011768499.1|88694_89228_+|anti-sigma-E-protein,-RseA
MKDVNEQLSAIVDNEFIDEKLIDELLINKDKQELFSRYHLIGDVMRGDITDQFINFDISQQVMAKIEQPTKIAAVVELDTPTEKSKNNVISFVKRFGQYAIAASVAGVVVLASLVTSEPTFQNNSAGLEVLKTVPLGAANPVSLQTTKKQSQQEVKKHNDRLEALLNDHQLQLQTQP
>NC_008709.1|WP_011768498.1|88100_88682_+|RNA-polymerase-sigma-factor-RpoE
MSERDLDLQLVRRIQNGDQVAFTLLVRKYQTRVANILTRYVRNTGDIADVAQEVFIKVHNSLPSFRGESAFYTWLYRITVNTAKNYLTSQSRRPPASDIDAMEADSFDGSDALREVDSPEGILRSQEVKKVILTTINELPSELKAAITFREIEGMSYEQIAIIEDCPIGTVRSRIFRAREMIDKHLKPLLAED
>NC_008709.1|WP_011768497.1|86238_87870_-|L-aspartate-oxidase
MTESKSISEKQHTCDVLIIGAGAAGLSLALKLAPHARINVLSKGKLSEGSTLYAQGGVAAVFSDDDSIEAHVKDTLIAGADLCDEEAVRFTVSNAKESIQWLIDTGVGFDTEINDDGQAQYHLTREGGHSHRRILHSADATGKEIETTLLSAVKKHKNINLMEGYNAVDLITSRQLNLPANRIIGAYVWNRKAERVEIIKANFVTLATGGASKVYQYTSNPDVSSGDGIALAWRSGCRIANMEFNQFHPTCLYHTDAKNFLLSEALRGEGAYLRRPDGTRFMLDFDERAELAPRDIVARAIDYEMKRLGADCMYLDISHKSKEFIVKHFPTIYHRCLSLGIDMAEQPIPIVPAAHYSCGGVMIDHHGQTDIDGLYAIGEVSYTGLHGANRLASNSLLECIVYAHACAKDIINRIPFYKERKFAKIPDWDESQVDDSDEAVVIQHNWHELRLFMWDYVGIVRTDKRLERALHRVQLLQQEIDEYYGNFKVSNNLLELRNLVQVAEIIIKSAMKRKESRGLHYNLDYPEQLDNPKPTILTPEKSC
>NC_008709.1|WP_041765694.1|85779_86232_+|hypothetical-protein
MSYSSALKYNISVNTSIYRGVFVFTLYSSLILLLLLVVELTWLSITLSLFLLVIAAYGGKKSYADTYNIKLSDTGKMEVVLANKQLISAEIGASSFYNGFCLFIHLQSRPTDLSNLITQKKRSKKFIVIYKDAVKEDEYRLLARLIKIGQ
>NC_008709.1|WP_011768496.1|85556_85808_+|succinate-dehydrogenase-assembly-factor-2
MAEAVNKSRLLWACRRGMLELDVLFIPFVKEAYDDLSYSEQLTFERLLTNEDPDLFAWFMGHKSCPDAEQAKIIDVILKRVKV
>NC_008709.1|WP_011768495.1|84138_85116_-|tRNA-modifying-protein-YgfZ
MFKLSQLNNISQLPDLVLCPLTSWDLLSVTGEDRITFLQGQLTCDLTILKPGEQTLAAQCNPQGKVWSIFRVVVLNDRILLIQPKSVTAKQLPELQKYATFSKVEIKKETEYQLLGLAGCKSAANIAKNFNISATHEESHLLDDDQGVIIKQPYPSLRYLMIVKNQQATQLTEDLKDQASVYDDSLWNAMNIAAGIAFIEEETSGLFIPQMLNLQALNGISFTKGCYIGQETIARTKYRGANKRALFILTGRATEAPKAGQNVKVLLNNNWKRVGTIISGCQYGDGHIEVLAILPKNSESESVYQIQGIEGSTLYYAPLPYQIDD
>NC_008709.1|WP_011768494.1|81339_83925_-|class-I-adenylate-cyclase
MNPEIKRLRDKADELTRLRIQSAELLMNADTLTVFRTFPLLLHYNHPSLPGYTKGDTPTGIHQFNVNKKQKKQLAELFPYQEEPQKKAQATNLITKPTDLKIQLNNLLSFQDEPQKKPQQADLIGLYAMGSTASIGQSSESDLDIWICYPHQMDKQRVQLLKNKSWLITHWAEGYGVELNFFLIPDNKFRIDNKSDMTMDACGTSQHLLLLDEFYRTELHIAGKRILWWQVPFEHEKNYNEYVKKLYDNGGLNPDDWLDLGGFDRIPAEEYFGATLWQLYKGIDTPYKAVLKTILMEAYSWEYPNTELIALYYKKRFQEQQTDLEYLDPYCLMLEKVTSYLNKINDFKRLEVVRACFYLKTEENLSKICTLNPPTWRRQVLTKFVNRWDWNKDHIADLDNRKKWKVRAVSNAKDILLDTLMASYSKLLRFARDNNIEGSISAEDLGILSRKLYAAHESLPGKVDLINPKISPDLSEPDLSFIQVPKNRKNAAGWYLYNCSLDSFTLINTPTLMYAKYIAKLVAWCHMNGLYEEETQLHLYNQGSDLVDKKLNQFIQDLYSVFPIYIPKASNNALSRPCEIKHLTIFLNLERDPTRHWESTSESEDDQQGDIFSYGEDKECLIGSIDLIYRNSWNEVRTLHFNSNQSVIDALHTILGKMHQGACPPEQIDLFCYSCQFQAQISQAFKSKLNEYIQLRLDSLSQRSVQTLKTGEENFAFYFEQTGVSVQHLKNLVDIYSHISNKKVSNSALNLKNTYFDKTVSIIGSHISEGIVQFFFENYHDGFNVYIANADNEIETLHSFTGGKDDLVQNVNRFYASNNNEMNKQDDRINFNLPQFYEIELSDNKELILSSFTSTTKENEP
>NC_008709.1|WP_011768493.1|80965_81256_-|met-regulon-transcriptional-regulator-MetJ
MSTKWNGEYISPYAEHGKKSEQVKKITVSIPTKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAYTGQPLPEDGDLDKNQATGIPESVKKLMKK
>NC_008709.1|WP_011768492.1|80293_80896_+|nucleoid-occlusion-factor-SlmA
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIDYIESTIFTQINLIKEQQKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENERLQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVANLLLAYVEGRMSQFVRSQFKQKPTQYFNTQWPFLYRQLQQS
>NC_008709.1|WP_086004599.1|79800_80259_+|dUTP-diphosphatase
MMKQIELKILDPRIGKEFPLPEHATAGSAGMDLRACIDQALIIKPGETQLIPTGIAIHISDPGLAATILPRSGLGHKHGIVLGNLVGLIDSDYQGPLMVSCWNRSTESFRLEPGERLAQLVFLPVVQATFEIVDEFKSSERGEGGFGHSGKH
>NC_008709.1|WP_011768500.1|89412_90420_+|sigma-E-factor-regulatory-protein-RseB
MKLLFYSKTLITAVFILIAGAAFSVQATEMSNDQTVKKDNITAIEYLQLMQTAYKNLNYEILYLNNLKNTVEPKQLLHGVINQEEIAYFRYLNGAMRESLQYLQKISYFEQGSQPYTLQSTRNQSVFANIANFNYDKGLDSYEYIILGKGRIAGKTAMAIRMISKDQYRYSYIVWIDLDTHLPLRLDTINSSNIILDQIMVVSLKVSEQVNPWLESLSNQKLPELFHLSQTSNLQASLWKVDWLPAGFNIVKDDQHKLVMYENEPVSYIMLNDGIVSVSVYISAKKTTSEQQQKTIQRGATVLYTDQKNNFEINVIGEIPVATAKRLIESISIVE
>NC_008709.1|WP_011768501.1|90423_90873_+|SoxR-reducing-system-RseC-family-protein
MVAEKGKIIAIEKSEGKTLAHIEYISKSACSSCQNNDTCGVGVVSKTFSDKALQFTIPYAKEMEVDKFVELNISNNDLIKSAMLVYLVPLLFFITSALIAKQFNITNEAIIILIAISWAAAGFVITHFVTKKLYPQKSINQLISSKTIQ
>NC_008709.1|WP_011768502.1|97661_98561_+|IS982-family-transposase
MINLTDTFCDVDDFCKAFIPEWEARLITNGEIKRRRVNRMSKAEIMTIIISFHQSHYRDFKNYYLGYVAKYLKPYFPALLSYTRFIEVMPSVIIPLNTYLTTLFGKPTGIAFIDSTKIAVCHIIRAKRNKVFNGTAKHGKGTMGWFFGFKLHLIVNHLGDILSVKITEGNVDDRNPVPDMVGALSGKLYGDKGYLGKALASKLQEKGVELITNVRKNMKKGVISKWDKAMLSKRYLIETINDQVKNISYVEHTRHRSITGFVANMLGGLIAYCLQKDKPSINLTPNEKNVIIGENIIMA
>NC_008709.1|WP_011768503.1|98919_99183_-|YihD-family-protein
MQSDRINKVIELLKPYWLKNKELSLIETLVRLTQESGFDKPLEKLNDEVIIYHLKMDQIEANEMLPGIAKDCKDDFKTALLQARGLI
>NC_008709.1|WP_011768504.1|99339_100158_-|shikimate-dehydrogenase
MDNYAVFGNPIKQSKSPFIHTLFAQQTQEKIVYSAIEPATDDFKTALKDFFLEQGKGCNITAPFKEQAYQYAQQLTERAALAGAVNTLKLTDDGIIIGDNTDGAGLVLDLKNNNVTLKGSRILLIGAGGAARGVCGPLLAEHPKELIIANRTFSKAQTLTTIFTKLGNISACEFSELSGEFDLIINSTSASLHGEVPLIGTKLIRPETTIYDMMYSAQVTPFNAWAKEQGAKFILDGLGMLVGQAAESFAIWRGVKPDAKQVLNELRHHLAT
>NC_008709.1|WP_011768505.1|100250_100826_-|L-threonylcarbamoyladenylate-synthase-type-1-TsaC
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTAHPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQIFHASTGKRLR
>NC_008709.1|WP_011768506.1|100831_101341_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTKPFVAILMGSDSDLPVMQGTIEILKSFSIAFEVKVTSAHRTPAATHAYVTDAENRGCKVFICAAGLAAHLAGAVAGITTRPIIGVPIDCGPLNGQDALLSTVMMPAGVPVATVAIGSAGAKNAAYLAAQILAVADDELAKRVKENRAENAQAVIAKDAALQLKLASL
>NC_008709.1|WP_011768507.1|101392_101956_-|hypothetical-protein
MPNSQEGLHSHHKKTKELCPECASELHIRNSKQGIFLGCSNYPECKYLRPLHEKSEIEKVLPGTRCALCGKEQVLKQGKYGLFIGCSAYPECSHTEQLSEKKEIADEKESVPCPSCKNGHLIKRHSRFGKIFYACDNYPSCKYAVNDKPVNQFCPDCHWPILVERKTASTFRIICPKKGCGYRGKPI
>NC_008709.1|WP_011768508.1|101957_102431_-|DUF494-domain-containing-protein
MFEIIMYLFESYMQIDQSTEIDAQEITDELLEEGFQKNDISKALAWLDNLTSLHEQNPESKTQLAKETSHRIYSAAEQHRISCDGQGFISYLNQADILNTHTQEVVIDCVMSLDVDELTLSDLKWLILMVLFNDPNSEDAFMQLESMLLDFEDGLIH
>NC_008709.1|WP_011768509.1|102476_103535_-|DNA-protecting-protein-DprA
MVLDAIPTLHKRTLLKLLTYHSIEQLLQLSRNQLQAYGLKDNQIAALLKPNLKLIESNLSWLDNSPENHIICYDSPHYPQLLREISSPPLLLYLQGNIGLLSTPQIAIVGSRNCTPYGQEKAYQFAQQLSTSGFTITSGLAIGIDGLAHQGAIDKQGHTVAVLGTGLNNIYPKRHLKLAQQIKEKGLLVSEFWPNAAAFPANFPRRNRIISGLSLGVLVIEASKRSGSLITARYALEQNRDVFALPGSIDNAEAWGCHQLIQQGAKLVMNTQDICDEFSHLCDPFSSSDGETTSLATPCHPLLKHIDFHLTTLEQLLNRSGFDVATLQNQLIELEITGRITVTTQGYIKLSN

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Crispr_ID: NC_008709_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_3

786768-786895

Orphan

Consensus_repeat	Method
CAAGGTATGGATATTTCTAAGTTTTGCAGGATGAAAAAAGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_3

>merge|NC_008709|3|786768-786895|CRISPRCasFinder
CAAGGTATGGATATTTCTAAGTTTTGCAGGATGAAAAAAGTAATCAGAGGAGTTTGTTATTGGATGTCGACCTAAACCCGAAGGGCAAGGTATGGATATTTCTAAATTTTGCAGGATGAAAAAAGTAA

>NC_008709|3|3|786768-786895|CRISPRCasFinder
CAAGGTATGGATATTTCTAAGTTTTGCAGGATGAAAAAAGTAA	TCAGAGGAGTTTGTTATTGGATGTCGACCTAAACCCGAAGGG
CAAGGTATGGATATTTCTAAATTTTGCAGGATGAAAAAAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769018.1\|787694_788264_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NC_008709.1\|WP_011769012.1\|781198_782131_+\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	unknown	unknown	gnl\|CDD\|236964
NC_008709.1\|WP_011769023.1\|792425_793628_+\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NC_008709.1\|WP_011769013.1\|782253_783483_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_008709.1\|WP_011769008.1\|776780_777110_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NC_008709.1\|WP_011769014.1\|783747_784404_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_008709.1\|WP_041765875.1\|793704_794133_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_008709.1\|WP_011769010.1\|779766_780168_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NC_008709.1\|WP_011769025.1\|795066_795495_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_008709.1\|WP_011769009.1\|777437_779630_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NC_008709.1\|WP_011769015.1\|784934_785525_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NC_008709.1\|WP_041766852.1\|791041_792241_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|236341
NC_008709.1\|WP_011769020.1\|789588_790809_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_008709.1\|WP_011769021.1\|790805_791042_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|236001
NC_008709.1\|WP_049752942.1\|794234_794585_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236852
NC_008709.1\|WP_011769011.1\|780172_780901_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NC_008709.1\|WP_011769016.1\|785870_786266_-\|DUF2391-family-protein	unknown	unknown	gnl\|CDD\|227055
NC_008709.1\|WP_011769007.1\|775913_776627_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_157035421.1\|788282_789596_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_008709.1\|WP_011769017.1\|787210_787510_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769018.1\|787694_788264_+\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	2.6314e-51
NC_008709.1\|WP_011769012.1\|781198_782131_+\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	gnl\|CDD\|236964	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF.	0
NC_008709.1\|WP_011769023.1\|792425_793628_+\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NC_008709.1\|WP_011769013.1\|782253_783483_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_008709.1\|WP_011769008.1\|776780_777110_+\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	7.10942e-56
NC_008709.1\|WP_011769014.1\|783747_784404_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	3.78038e-134
NC_008709.1\|WP_041765875.1\|793704_794133_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.99279e-14
NC_008709.1\|WP_011769010.1\|779766_780168_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	2.10023e-47
NC_008709.1\|WP_011769025.1\|795066_795495_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	8.39263e-14
NC_008709.1\|WP_011769009.1\|777437_779630_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_008709.1\|WP_011769015.1\|784934_785525_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	6.88728e-63
NC_008709.1\|WP_041766852.1\|791041_792241_+\|oxidoreductase	gnl\|CDD\|236341	PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated.	0
NC_008709.1\|WP_011769021.1\|790805_791042_+\|NAD(P)-binding-protein	gnl\|CDD\|236001	PRK07364, PRK07364, FAD-dependent hydroxylase.	1.77135e-10
NC_008709.1\|WP_049752942.1\|794234_794585_-\|hypothetical-protein	gnl\|CDD\|236852	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX.	1.73227e-51
NC_008709.1\|WP_011769011.1\|780172_780901_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	3.70982e-07
NC_008709.1\|WP_011769016.1\|785870_786266_-\|DUF2391-family-protein	gnl\|CDD\|227055	COG4711, COG4711, Predicted membrane protein [Function unknown].	1.64199e-08
NC_008709.1\|WP_011769020.1\|789588_790809_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	3.486e-144
NC_008709.1\|WP_157035421.1\|788282_789596_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_008709.1\|WP_011769017.1\|787210_787510_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	5.62763e-19

>NC_008709.1|WP_011769016.1|785870_786266_-|DUF2391-family-protein
MKFSFNMEDVSQVFVGAFALAVPISFSEEAWRLSETLPFPNLLMLLTLSILFLAFFTYQSVFQKNIKSRVIVFIFRIFIAYVMAAFVVSLVLFCLNKLPLLEDPITALKRIIIITMPASMGAIVVDSFDKE
>NC_008709.1|WP_011769015.1|784934_785525_-|5-formyltetrahydrofolate-cyclo-ligase
MNKTLSRTEIRHQIRTARRDLSGLQQKQDADSLFSRLIKHSRVQQAGKISVTLAYDGEIDTLRFVEWCWQKNKKIYLPVIHPFNKGHLLFLEYTTKTEMVLNQHGIFEPKLNQLDACPMKELDLIFTPLVAFDTQGNRIGMGGGYYDRMLAPWFKDKTGPYPIGLAHDCQQVQQLPVEEWDVPLPEIITPSMHFCW
>NC_008709.1|WP_011769014.1|783747_784404_-|ribose-5-phosphate-isomerase-RpiA
MTQDEMKKAAAYAALEYVQPDSIVGVGTGSTVTHFIDALATIKDLIKGAVSSSDESTARLQSYGIDVFDLNEVSELSIYVDGADEINPYNHMIKGGGAALTREKIISAVAEKFICIVDNTKNVDILGDFPLPIEVIPMARSYVARELVKLGGDPVYRQGVVTDNGNVILDVHNLKIAEPLKLEAQINAIVGVVTNGLFANRAADVVLVGTPEGVKTLK
>NC_008709.1|WP_011769013.1|782253_783483_-|phosphoglycerate-dehydrogenase
MTKLSLDKDKIKILLLEGLHQSAVDTFTQAGYNNIQNIKTALSEEELIEKIKDAHFVGIRSRSNLNATVLAAADKLVGIGCFCIGTNQVDLNAAQAKGIAVFNAPFSNTRSVAELVLGQSLLLLRGIPERNAKAHRGEWDKSATKSYEARGKNLGIIGYGHIGTQFGILAENLGFKVSYYDVENKLSLGNAVQIATMEALLAQSDIISLHVPELDSTKNMMGAKEFAQMKDGAIFMNAARGTVVDIPALCAALESKKLSGAAIDVFPTEPGSNKEEFISPLRKFDNVLLTPHVGGSTQEAQENIGYEVAGKLVKYSDNGSTLSSNNFPEVSLPVHVDASRLLHIHKNMPGILTKINLTFEEYGINIAAQYLQTNANIGYVVIDVNSDDAQLALAKLNEIEGTIKARLLR
>NC_008709.1|WP_011769012.1|781198_782131_+|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF
MTKDIQVKKLLHPRNLHRGHYDLKQLCEQSPLLSTFLRTNPKGEQTLDFAEPQAVLLLNQVLLKQFYHVDFWQIPKGYLCPPIPGRVDYIHYLADLLGDTFHGKIPEGKQVKVLDIGTGANCIYPILGSQSYGWSFVGTDIDPLSVKMAGLIIKSNVSLKPFIKVQLQANKQAIFAGIIKPKDKFTLTMCNPPFHASMEKALAGSARKIKNLSNDQNNLSRVLNFAGQEGELCCAGGEIRFLKQMIQESKDYARQVCWFTSLVSKSDNIAPLKQQLEKVGAEHVKVIKMAQGQKVSRFIAWSFLPQPQNF
>NC_008709.1|WP_011769011.1|780172_780901_+|DUF3108-domain-containing-protein
MKINKFLSFLLFFLLLTTSRLGLAEEVDLVPVNEQTYVYDVYYKKLSIGQMIRELQLKDEQIKVNTITDLSFLLMKFGGNQSSDIYWDEKTQQYLTKRFLRNSVGFSSVSMAAQFSNNGHNTTIINNGKSTYFSNPDEYIVDFNAVLLQIRKGLKSGQTDFEFFMQTSDSIGHYFFKVTGKEMIDSKFGKFESYRVEQMKKNDRTLTAWFAVALDHQMIKFSYKRNILDIRGELSEYPDMNL
>NC_008709.1|WP_011769010.1|779766_780168_+|SufE-family-protein
MALSLPTTEQLLNDFQENKSWDKQYKLIIQWGKKLPDMDSQDKIETNRVEGCESLAWLIIEKEEDFYTFNMDSETRVVKGLMMILLIIYQGKNAEQIRHFDIHHYFEKLGLLKHLSPSRANGLFTIVQKIQEI
>NC_008709.1|WP_011769009.1|777437_779630_+|penicillin-binding-protein-1B
MSKKSKTPEVVETSKQPKSKAGPKPKPKPKPKPKSQNKKSLKQLFLSFLWSFFWKGSIAFIALMFIAGIYFDKKIERKLDGSTWTLPAQVYARPLLLTSSSQLSKQALIAELKLLNYRPVRNVQASGQFAVNKQQVLIYKRAFNFPDRYESAKLITVNFSGDWIQSISGKNQQNINSVRLDPLLLERLASNNIEDRVFIPFEQIPDLLVNTLLLMEDRNFYHHQGISPIAILRAFIVNVKAGKTLQGGSTLTQQLAKNLFLNEDRSLWRKFQEAYIALLIDYKYSKDKILEAYLNEVYLAQNGSSGIYGIELASDYYFARPINELRIEQIALLVAIIKGPSYYNPHRNPQRALARRDLVLRTMLEYNLIGVRDYQYAVRGELNLSAIGALNHRKNPAFVSLLRRELQANVTNKVRKRNGLFIFTSIDPFVQKNAELAVSQGIDGLEKKGQLMLQGAMVVSDRKHAEVLGLVSGKEVKFSGFNRALDAKRPIGSLVKPVVYLTALDGGFDLDDRLNDKEILLTNGSGEHWSPKNYDRKFRGDVSLEDALIYSLNVPTVNLGMQVGLNNVINSLYKMGVTEKISAYPSLVLGSVALSPFQVAQLYQPITMSGVYQPLTIIRSIVSKEGQLLYQRPVRRKKIFSEKAVTKLTNTMHKVTTQGTARSLTWRNKGQYFSGKTGTTNNLYDSWFVGFDAEQVVTTWVGRDDNKSAQLTGSSGALILFSDYMNNKKR
>NC_008709.1|WP_011769008.1|776780_777110_+|ASCH-domain-containing-protein
MIDVANKITFFEFLTPLIKSGKKTITIRDKSESHYLVGSQVEVFTLETDQKVCEIEIVSVEAIRFDLINEFHAQQEHLALPRLKELIKEIYPNTNELFVITYKLMPSDT
>NC_008709.1|WP_011769007.1|775913_776627_+|hypothetical-protein
MNNEFNVEILSFLKISEIENAWTADDYKALLSMIDMGEDELGGMSESELKEMCLMSLNDLEAHESAKLLLAHIFKDEITAGKIDQISHQMLEKNLWEVHADPAYHMSLFNAYELLRKAYNGTFTEPTGVKFTIKISADKKESFDIFDGSLHAVIVRLLANGLKKSAILNRLFEEKIIGESFPEAKNILWILKELSTTDNERQYEITSSYLWFGELEDVTPFDADAHADREEEDQETK
>NC_008709.1|WP_011769017.1|787210_787510_-|cell-division-protein-ZapA
MAHIDISILGQQYKISCPEGEELTLQNSVDQFNERISNIKSNARNLRNEQVIVLAALNFCHELSVEQTQHKEHVEKLDQRIQKINDSIDLRLAKTIKKN
>NC_008709.1|WP_011769018.1|787694_788264_+|UPF0149-family-protein
MSNEPLPSFNKITQTLEAAELFTNASETHGVLSGLICGGVKLDGKSWRPHFNDVVNEGVGLPRSAQKLVESIYGQVVNQFTDDGLGFNLLLPDDEVPLDERAEAMSQWSQGFLVGFGMVQQALNEAPADVQELIRDIRDISQVSLDFEQEDEESEIAFAEIVEYLRVGAMLCFNTFSRNPNTPISKTLH
>NC_008709.1|WP_157035421.1|788282_789596_+|Xaa-Pro-aminopeptidase
MTEFQQRRASFFTKMQNNSLAIFPAAEEKIRSKDTEYPFRQNSDFYYLTGFNEPDAYLLIINKCGEQQTVLFNRKKDKNAEIWHGLRMGQSAAVSTLGFDLAYDVLEFEEQLQGFIGDFSVLYYPVFNAPELEKRLSSVINLMRADRSKGQAAPTQFIDNLAIVHEMRLIKSENEMALMSDAAEISAAGHIRAMQLCHPGMWEYQLEAEIRYEFAQQGATNVAYNSIVAGGHHACILHYTENNQQLHDGDLVLIDAGAEYKGYAGDITRTFPVNGIFSEHQAKLYQLVLNIQVSAINQVKPGVALADINKSAVKKMIEGLLELGIVEGDSEQLIKDQAHKEFYMHGLGHYLGLDVHDVGLYGTAEHPRLLEAGMVITIEPGIYISENANVDDVWKGIGIRIEDDVLVTQSGAEVLSADVPKSINEIEALMANVTVYG
>NC_008709.1|WP_011769020.1|789588_790809_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MDKNSDYDLVIVGAGIVGSLLAYALLKRSPTLRVALVDENPKPASGSKSSIPGFDARSIALSAGTCDILDDLGFWADIKAHAQPIEEIHISDRGCFGKLDLCAKDEPQAFGYVLELHQIGCALNKRLDKLTQLARFYDSRITKIEKQPEQTLCHLFDNTILTAKLCVAADGANSSTRHLLSIPSQSFDYECTAIIANVRCSKPHLNKAFERFTEFGPIALLPLTDNRYSLVWSVASGDAARLCALNDEHFLSELQNAFGYLAGVFTAAGKRDSYPLKLTKTTQPFAHRGVCIGNAAHCLHPVMGQGFNLGMRDLFVLSSIISELQDPQKIGGFDMLNRYWLARESDHNNTISLTDSVVRIFNNNHWPIILGRNVVLQAMRYLSDLSVPIIKQAKGQFPLLSRDTNK
>NC_008709.1|WP_011769021.1|790805_791042_+|NAD(P)-binding-protein
MMQSYDLTIVGGGIVGLTLAASLADRALSIALIETSNRPIILGRNVVLQAMRYLPDLSAPIIKQAKGQFPLLSRDTNK
>NC_008709.1|WP_041766852.1|791041_792241_+|oxidoreductase
MQSYDLTIVGGGIVGLTLAASLADSALSIALIETSNRPILPEKPVNRVSAISFASKKIFEKLSVWQQLDSGRITAYDSMLVWDKDSFGKIEFSAQQVGYSELGYIIENDNLCLALLDTVQKQKNVSFYSPDSLNDIVFGEGEAWLTLHSGKTLTSKLVVGADGANSWLREKSTIPLTFWDYQHHALVATIKTELPHEHCARQIFTPDGPLAFLPLFEQNLCSIVWSVSPQKAEQLKNLTAVEFNKQLSRNFDNRLGLCELQSERFSFPLRMRYARDFAKHRIALIGDAAHTIHPLAGQGVNLGLLDAVSLGQTIEQNIAAEKDIGLYKNLRYFERWRKTEAAQMIASMELLKQLFEGDNPLQKALRDVALVFTDQVSPLKKSFIKQAMGLSGELPLLAK
>NC_008709.1|WP_011769023.1|792425_793628_+|trans-2-enoyl-CoA-reductase-family-protein
MIIKPKIRGFICTTTHPVGCEKNIQAQIEYTKQQGKIANGPKRVLVIGSSAGYGMSSRVAAAYGSDASTIGVFFEKPATEKKPGSAGWYNSAAFEKQAKADGLYAKSINGDAFSHEIKAKVVELIKQDLGQIDAIIYSVAAPVRKLPDTGEVIRSSLKPIGETYISTAIDTNKDVIINATVEPATEEEVADTVTVMGGQDWELWLSALGEAGVLAEGLKTVAYSYIGTELTWPIYWDGALGKAKIDLDRASTAIQAQLAPLNGEAYVSVQKSVVTQASSAIPVMPLYISMVFKIMKEKGLHEGCMEQIYRLFTSQLYKQDGSAPETDQARRIRLDDWELRDDVQQACKELWPKITTENLFELTDYKEYKEEFVQLFGFSIDGVDYDADVDTVVEFDCLSV
>NC_008709.1|WP_041765875.1|793704_794133_-|winged-helix-turn-helix-transcriptional-regulator
METSDKVLVAIRQITRGIDLYSKKMSKDFGLTSPQLMLMRTIQRDNHVTIRQLSEKTNMSQATATIILDRLEARGRVVRIRNQQDKRKVHALLTESGQQMLAQEPSILQPGFLEQFQALEIWEQNLILSSLQRLSSMMNTQD
>NC_008709.1|WP_049752942.1|794234_794585_-|hypothetical-protein
MEQELDKDVVWLEVLFSALPGEQKNIDTKLPNGKNHSFQISSMHIVTNKKFADANPAAAKLFELMKFDINDVSAENVIMAKGTNKPKDIEVHADGGIKADQKQFYASIETTKKAAM
>NC_008709.1|WP_011769025.1|795066_795495_-|MarR-family-transcriptional-regulator
METSDKVLVALRQIMRAIDLHSKKMSKDFGLTSPQLMLMRTIQLDDNVTIGQLSEKNSMSQATATIILDRLENSGRVVRIRNQQDKRKVHARLTESGHKMLAEAPGILQPDFLEKFQSLELWEQSLILSSLQRLSSMMNAPN

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Crispr_ID: NC_008709_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_4

1004053-1004129

Orphan

Consensus_repeat	Method
GCCTTAAAGCCCTCTGGCCTTTCCGCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_4

>merge|NC_008709|4|1004053-1004129|CRISPRCasFinder
GCCTTAAAGCCTTAAAGCCCTCTGGCCTTTCCGCCTTCGCACTTTCGCGCCTTCTAGCCTTCACGCCTTAGAGCTTT

>NC_008709|4|4|1004053-1004129|CRISPRCasFinder
GCCTTAAAGCCTTAAAGCCCTCTGGCCTT	TCCGCCTTCGCACTTTCGC
GCCTTCTAGCCTTCACGCCTTAGAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769216.1\|1012097_1012751_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NC_008709.1\|WP_011769208.1\|1002896_1003856_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769200.1\|993739_994864_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_008709.1\|WP_011769198.1\|990815_991943_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NC_008709.1\|WP_011769202.1\|995660_996794_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433
NC_008709.1\|WP_011769205.1\|998589_999999_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_008709.1\|WP_011769199.1\|992013_993213_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NC_008709.1\|WP_011769206.1\|1000110_1001838_+\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|238535
NC_008709.1\|WP_011769211.1\|1005739_1006864_-\|ISAs1-like-element-ISPin4-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_008709.1\|WP_011769203.1\|997165_998074_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_008709.1\|WP_011769212.1\|1007230_1008817_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_008709.1\|WP_011769214.1\|1011127_1011607_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NC_008709.1\|WP_041765957.1\|1011668_1011965_-\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|182393
NC_008709.1\|WP_041765954.1\|1010276_1011050_+\|preprotein-translocase-subunit-TatD	unknown	unknown	gnl\|CDD\|238635
NC_008709.1\|WP_011769207.1\|1002081_1002714_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_008709.1\|WP_011769204.1\|998192_998540_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_008709.1\|WP_011769210.1\|1004654_1005044_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_157035303.1\|1009572_1009734_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769218.1\|1015168_1016002_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|183230
NC_008709.1\|WP_011769209.1\|1004182_1004452_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769216.1\|1012097_1012751_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	3.14966e-125
NC_008709.1\|WP_011769200.1\|993739_994864_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.77628e-39
NC_008709.1\|WP_011769198.1\|990815_991943_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	1.13882e-131
NC_008709.1\|WP_011769202.1\|995660_996794_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.12821e-111
NC_008709.1\|WP_011769205.1\|998589_999999_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_008709.1\|WP_011769199.1\|992013_993213_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	4.13779e-107
NC_008709.1\|WP_011769206.1\|1000110_1001838_+\|SLC13-family-permease	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	1.14321e-26
NC_008709.1\|WP_011769211.1\|1005739_1006864_-\|ISAs1-like-element-ISPin4-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.28595e-39
NC_008709.1\|WP_011769203.1\|997165_998074_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_008709.1\|WP_011769212.1\|1007230_1008817_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_008709.1\|WP_011769214.1\|1011127_1011607_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	5.0976e-86
NC_008709.1\|WP_041765957.1\|1011668_1011965_-\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|182393	PRK10343, PRK10343, ribosome assembly RNA-binding protein YhbY.	1.73734e-39
NC_008709.1\|WP_041765954.1\|1010276_1011050_+\|preprotein-translocase-subunit-TatD	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	6.00702e-89
NC_008709.1\|WP_011769207.1\|1002081_1002714_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	6.34168e-132
NC_008709.1\|WP_011769204.1\|998192_998540_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	7.71781e-47
NC_008709.1\|WP_011769218.1\|1015168_1016002_+\|dihydropteroate-synthase	gnl\|CDD\|183230	PRK11613, folP, dihydropteroate synthase; Provisional.	2.63097e-134
NC_008709.1\|WP_011769209.1\|1004182_1004452_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	3.15873e-25

>NC_008709.1|WP_011769208.1|1002896_1003856_+|hypothetical-protein
MNYDIFNGDADGIIALLQLRLASPQQNKLITGVKRDINLVGQVDAAAGEKLTVLDISMEKNIDGVKRALSNGAEVFYADHHRSGEIPVHENLQAMIDLDANTCTALIIDQLLEGQFHEWAITAAYGDNLITKADQLAADAGLTKAEAEQLKELGTLINYNGYGAKIDDLHFHPANLYGSLLKYLSPLDVIADKASPFGQLQQAYQSDMEEALAVPANYRSELLSVYLLPDAAWARRIGGVYGNLLANQGPDSAHAVLTENADGSYLVSLRAPLSNKQGAGDICSQFITGGGRAAAAGINKLPKDKLSSFIDAVEGFYKA
>NC_008709.1|WP_011769207.1|1002081_1002714_+|adenylyl-sulfate-kinase
MSTPYSNKEVNGDKSSDVVWHEAAVSHEARVKLNGHKPAVLWFTGLSGSGKSTVANAVDYMLHQLGAKTYVLDGDNVRHGLNGDLGFSDAGRIENIRRIGEVSKLFVDAGLLVSSAFISPFNADRQMVRDLLAEGEFIEVFIDTPLAVCEQRDPKGLYQKARAGEIKNFTGIDSAYEAPVNPEVHVETADKSVEECAQQVVQYLKQQEYI
>NC_008709.1|WP_011769206.1|1000110_1001838_+|SLC13-family-permease
MNIDSYFVLSVFVGTIIGLIKFQQRPAFVFGITLLILFVSNMVSTEQVVSSFANQGLLTLILLLVCSLALEKTRFLRMIATKVIHKSYGKTFFHLFSFTVLSSALLNNTAVVSTMLAPIRNNPHHAGSKLLLPLSYAAILGGTLTLVGTSTNLIVNSLVIGAGLPPLSFFDFTLVGICLVITCGIALWFLSRFLPEHHVNSEVLKTYFIDAKVGEKSTLVGKTIEENGFRQLESLFLVEIVRAEHLLSPVPPTEVLQINDRLIFSGDVAKVQQLNQFDGLSIFAHHQGLRLDNLTEVVIRPESVLLGRTLKKAGFRALFDAAVVAIKRDGENLSGKLGEVTLNAGDYLVLAVGDDFKSRRNISKNFILVSGVELDSMLSGGKALLAILGFFAAILGSALGLFTLFKGLIILLGLLILTGSVSSGELLRRLPAELWLIISSALALSYSLKNSGLLDVFSVFMDNYALGISPLFALVIIYILTWLLTELVTNNAAAALIFPIAYGLAVTLDANPMAFIMAVAFGASGSFVSPYGYQTNLMVFNAGQYKLIDFVKIGLPVSIIYGVVAVTAITLVFGL
>NC_008709.1|WP_011769205.1|998589_999999_+|sulfate-adenylyltransferase-subunit-CysN
MSNDSNLLATDIEEYLRVHENKDLMRFITCGSVDDGKSTLIGRLLFDSKMIFEDHMAAIEKDSKKFNTTDNDFDLSLLVDGLQSEREQGITIDVAYRYFATEQRKFIIADTPGHEQYTRNMVTGASTCDLAIILIDARYGVQVQTRRHSYICSLLGIKHLVVAVNKMDAVDYDQAVYKKIKADYREFAKQLNIADIRFVPISALKGDNVVNESENMTWYPGSPLLRLLNTIQIDTDINDKFRLAVQYVNRPNLDFRGFCGTVASGEIRVGDTIQALPSGKQSKVKSIVTFDGELESAFAGMAITLTLEDEIDISRGNMIVRPHEKPTSSKNFVADLVWMTEEALHVDREYIIKAGAHSTFGSVISINNKVDVNTMEKCEANQLVLNEIGSCNFEVAEALHFDRYSENRATGAFIMIDRLTNATVGAGMISGSVEALAKTAPEYSAFEVEFNALVRKHYPHWETKDITKL
>NC_008709.1|WP_011769204.1|998192_998540_+|four-helix-bundle-protein
MNFEKLDVWKKSARLSAELYKATADLRDYGFRDQLTRSGLSVPSNIAEGMTRSSKKEKCRFLEIARSSLAEARTQIYIGIDIGYLSSTEGKNWLEQTHHISMMITGLMKAVESNE
>NC_008709.1|WP_011769203.1|997165_998074_+|sulfate-adenylyltransferase-subunit-CysD
MKKNRLTHLKALEAESIQIMREVAAEFDNPVMLYSVGKDSSVLLHLARKAFYPGKIPFPLLHVDTNWKFKEMIAFRDNIAKKYDFDLLVHKNPRGMEMGISPFEHGSAKHTDIMKTEGLKQALDKYGFDAAFGGARRDEEKSRAKERVYSFRDKKHRWDPKNQRPELWNIYNAKVDRGESIRVFPLSNWTELDIWQYIYQEDIEMVPLYFAKKRPVVERDGALIMVDDERMPLKEGEVPEMKMVRFRTLGCYPLTGAIESQATTLPEIIQEMLLTTTSERQGRVIDNDSAGSMEKKKMEGYF
>NC_008709.1|WP_011769202.1|995660_996794_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MLFYFSVLIFAFVASFSAIKVLKPLAVKLGLTDKPNARKNHRGEIPLVGGISVYIGLFCSGFLLLIVEPVNIDLLTYLFASLLMVVTGALDDRFDLSVRIRILAQVLIASIMMFVADRVLFNLGDLLSIGEISLGYFAYPFTVLAVLGAINAYNMIDGIDGLIGGVSFATFVPLTIIFYMAGDIEVAFFCLLCVVVLAPYLLHNLQLTRFSSKKIFMGDAGSMFIGFTVIWLLAIGSQGDSSGSEPYFSPVVAVWFIALPLMDMTAIIIRRIKKGNSPFAADRDHLHHLFMRAGFTPRQTLIFITCLALMLSMIGVFTTLYSIPDWIQLVAFITLFGIFQTSLAYIWVLLKTFRKIMALKRLAKFKKIRKKLKADRY
>NC_008709.1|WP_011769200.1|993739_994864_+|ISAs1-family-transposase
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQLIDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMVADANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWTVENNLHWQLDISMNEDSCRIRQQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSLL
>NC_008709.1|WP_011769199.1|992013_993213_+|glycosyltransferase-family-4-protein
MRLALLIDDYMPDSTRVGAKMFHELACEFVKCGHEVVVITPGINQKNPLEKSDLDGVAVWKFNSGPIKDIGKIKRAINETMLSTRAWNAIKSELNSSFFDGIVYYSPSIFFSRLVTKLKKTCGCASYLVLRDLFPQWAVDEGLMKEGSLIEKYFRFFEKLNYKAANHIGLMSQNNLTLFNNRTDNLYQTNILRNWAAFSPFNFQDADFSYREKLNINNKTIYFYGGNIGHAQDMENLMRLARDMQSYAQAHFLFVGQGDEVELINKLAADWKLDNFTYLPSVNQEEFKHLLSEVDVGLFSLAHSHTAHNFPGKLLGYMVESLPILGSVNPGNDLLDIVREYDAGDIFINGDDKNLFEAAITYLDDEYRNNKGNNATALLHKEFTVESAAKDIVNIFSHR
>NC_008709.1|WP_011769198.1|990815_991943_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MQKLKVATIVGTRPEIIRLSRTITKLDKYCDHTLIHTGQNYDYELNQIFFDDLGIRAPDVFLECAGATAADTMAQVIRKSDKVFEDILPDALLILGDTNSALSAISAKRRKIPIFHMEAGNRCFDMRVPEEINRKIVDHISDVNMPYSDIAREYLLREGLKPEFIIKTGSPMAEVLSFYKDSIDSSDVISRLEIESGKYFVVSVHREENVDSESNIHKYVNVLNTIADKFGLPIIVSTHPRTRKKIEALNLHFSPLVQLLKPLGFSDYVKLQCDSKLVLSDSGTITEESSIMNFSALNIREAQERPEGFEEGAVMFTGMEIDRILQAIDILEDQSDGEKRTLNIVADYVAPNVSDKVVRIITSYTDYVNKFVWKK
>NC_008709.1|WP_011769209.1|1004182_1004452_-|RNA-binding-protein
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMKTLNGYKLAGNFIRVKKAESKVEATEEIKE
>NC_008709.1|WP_011769210.1|1004654_1005044_-|hypothetical-protein
MNKVIAFFFLLISLNTQAQGNSGFNSEISHFAGGAVSTAAAVVIIDKYFPEQNSAWVGFALSSTVDALLEYRQYQLGDNSASAALLDASSHALGAAVGAYLTGKYIITPTVALDANNNFYTGINIAFDF
>NC_008709.1|WP_011769211.1|1005739_1006864_-|ISAs1-like-element-ISPin4-family-transposase
MSQITLIKQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRVFQLIDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKDNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMVADANEIGDLVFEWPGLKTLGYVVSFRTEKDMQTTIAVKFYISSAKLDAKSLLEASRAHWTVENNLHWQLDISMNEDSCRIRQQNSTENIATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSLL
>NC_008709.1|WP_011769212.1|1007230_1008817_+|peptide-chain-release-factor-3
MTSKDIIENVEKRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTVKGKKSGQHAKSDWMEMEKDRGISITTSVMQFPYKDRLVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDAAKGVEQRTIKLMEVTRLRDTPIITFMNKCDRETRDPVDLMDEVEAILNIACAPITWPIGMGKEFKGIYDLLRDEVILYSSGQGHTIQEVRIIKGLDNPELESVLPNHIHDLREELELVVGASHQFDHELFLKGQLTPVYFGTALGNFGVDHVLDGLVEWAPKPLSRAAKQRVVEPLEDVFSGFIFKIQANMDPRHRDRIAFMRVCAGKYEKGMKMHHVRTGKMVSISDAVTFMAGDRTATEEAYPGDIIGLHNHGTIQIGDTFTSGETLKFAGIPNFAPEMFRRIRLLDPLKQKQLLKGLMQLSEEGAVQVFRPLRSNDLIVGAVGVLQFEVVVQRLKSEYKVDAIYEAISVATALWVESDNPLKMAEFEKKAYDNLALDGSNNLAYIAPTMVNLNLAMERYPDIRFRKTREH
>NC_008709.1|WP_157035303.1|1009572_1009734_+|hypothetical-protein
MNVGIYDNDLKGVGQDAEVIYDSSVLSSACPYSMSYGSACSYCVLVTLCALNQ
>NC_008709.1|WP_041765954.1|1010276_1011050_+|preprotein-translocase-subunit-TatD
MFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLCENHPNLYYALGYHPHFLDYFKLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQESIFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGGVYHAFSGSYELALEFIKLGFKIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLALLRGESKKCLASQLYNNTRSLFSLDND
>NC_008709.1|WP_011769214.1|1011127_1011607_+|transcription-elongation-factor-GreA
MVQYPMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEGRIQDIEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLISVSSPLARGLIGKTLDDEISIVTPGGTIDYEIISVQYIA
>NC_008709.1|WP_041765957.1|1011668_1011965_-|ribosome-assembly-RNA-binding-protein-YhbY
MKLSNKQKQYLKGLAHSLKPVVLLGQNGLTEGVLAEIENALSHHELIKIKVSSDDRETKQLIIDAIVRETEALNITKIGHIVVLFRPSEDKKIELPRK
>NC_008709.1|WP_011769216.1|1012097_1012751_+|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MAQKDHPNGPKKSASASSKRWMYEHVNDFYVKEATKKGLRSRAVFKLEEINKKDKLIRSGMTVVDLGAAPGSWSQWAVDTVGLKGKVIACDILPMDSIAGVDFLQGDFREDAVVNALLARIAGHKVDVVLSDMSPNMTGTVGIDQPKSMYLVELALEMCKEVLVKEGSFVVKVFMGSEFDLFMSEARKCFKSVKTRKPDSSRSRSREVYVVATGYKG
>NC_008709.1|WP_011769218.1|1015168_1016002_+|dihydropteroate-synthase
MQLISGSKILDLSEPKVMGILNVTPDSFSDGGRFSNIDNALKQAQKMLEQGASILDIGGESTRPGAIDVSEQQELDRVIPVIEQINQEFDCWISIDTSKANVMQAAVNAGADLINDVRALREDNALDVAVNANVPVCLMHMQGQPRSMQSAPEYENVIEEVKTFLLQRAEICINAGIKKENIILDLGFGFGKQLNDNYELLAATDQFVKLNYPILTGLSRKSMFGQLLNRDVTHRLAGSLAGALIALQQGSQIIRVHDVAETADVIKVLQTVNAFKK

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Crispr_ID: NC_008709_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_5

1608617-1608724

Orphan

Consensus_repeat	Method
GTCAGCGGCAGGCGTAACCTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_5

>merge|NC_008709|5|1608617-1608724|CRISPRCasFinder
GTCAGCGGCAGGCGTAACCTTTTAAGCTTGCTATACGACTAAAGCTGAATTAATAACACTGCATACTCTATGCAGTGTTTATTGTCAGCGGCAGGCTTAACCTTTTAA

>NC_008709|5|5|1608617-1608724|CRISPRCasFinder
GTCAGCGGCAGGCGTAACCTTTTAA	GCTTGCTATACGACTAAAGCTGAATTAATAACACTGCATACTCTATGCAGTGTTTATT
GTCAGCGGCAGGCTTAACCTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769687.1\|1603700_1604705_+\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NC_008709.1\|WP_011769695.1\|1620690_1622289_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_008709.1\|WP_011769697.1\|1624356_1626042_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|143581
NC_008709.1\|WP_011769686.1\|1601189_1602470_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234824
NC_008709.1\|WP_011769682.1\|1597548_1597884_+\|zinc-chelation-protein-SecC	unknown	unknown	gnl\|CDD\|200353
NC_008709.1\|WP_011769696.1\|1623138_1624194_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259806
NC_008709.1\|WP_011769683.1\|1597927_1598224_+\|DUF1244-domain-containing-protein	unknown	unknown	gnl\|CDD\|226023
NC_008709.1\|WP_011769693.1\|1614434_1618139_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NC_008709.1\|WP_011769690.1\|1607577_1608543_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NC_008709.1\|WP_041766104.1\|1613223_1614438_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NC_008709.1\|WP_011769684.1\|1598276_1599080_-\|DUF2431-domain-containing-protein	unknown	unknown	gnl\|CDD\|378418
NC_008709.1\|WP_011769689.1\|1606440_1607574_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
NC_008709.1\|WP_011769694.1\|1619910_1620342_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270371
NC_008709.1\|WP_011769691.1\|1608829_1611076_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_008709.1\|WP_011769681.1\|1596847_1597312_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182143
NC_008709.1\|WP_011769685.1\|1599337_1601092_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NC_008709.1\|WP_011769698.1\|1626484_1627525_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225797
NC_008709.1\|WP_157035317.1\|1628251_1628554_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769688.1\|1604872_1606444_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
NC_008709.1\|WP_011769699.1\|1627535_1628168_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769687.1\|1603700_1604705_+\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	6.14513e-114
NC_008709.1\|WP_011769695.1\|1620690_1622289_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.54798e-68
NC_008709.1\|WP_011769697.1\|1624356_1626042_-\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|143581	cd07177, terB_like, tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.	6.45074e-05
NC_008709.1\|WP_011769686.1\|1601189_1602470_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234824	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NC_008709.1\|WP_011769682.1\|1597548_1597884_+\|zinc-chelation-protein-SecC	gnl\|CDD\|200353	TIGR04102, SEC-C_motif_domain_protein, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family. Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.	3.38682e-60
NC_008709.1\|WP_011769696.1\|1623138_1624194_-\|SPFH-domain-containing-protein	gnl\|CDD\|259806	cd03408, SPFH_like_u1, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	9.73709e-85
NC_008709.1\|WP_011769683.1\|1597927_1598224_+\|DUF1244-domain-containing-protein	gnl\|CDD\|226023	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown].	1.31398e-42
NC_008709.1\|WP_011769693.1\|1614434_1618139_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	5.71215e-84
NC_008709.1\|WP_011769690.1\|1607577_1608543_+\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	8.79304e-106
NC_008709.1\|WP_041766104.1\|1613223_1614438_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NC_008709.1\|WP_011769684.1\|1598276_1599080_-\|DUF2431-domain-containing-protein	gnl\|CDD\|378418	pfam10354, DUF2431, Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.	5.59814e-37
NC_008709.1\|WP_011769689.1\|1606440_1607574_+\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.02795e-101
NC_008709.1\|WP_011769694.1\|1619910_1620342_+\|hypothetical-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.38206e-07
NC_008709.1\|WP_011769691.1\|1608829_1611076_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.58933e-87
NC_008709.1\|WP_011769681.1\|1596847_1597312_+\|hypothetical-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	6.62871e-45
NC_008709.1\|WP_011769685.1\|1599337_1601092_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.23288e-76
NC_008709.1\|WP_011769698.1\|1626484_1627525_-\|c-type-cytochrome	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	9.17161e-76
NC_008709.1\|WP_011769688.1\|1604872_1606444_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NC_008709.1\|WP_011769699.1\|1627535_1628168_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.93384e-13

>NC_008709.1|WP_011769690.1|1607577_1608543_+|ABC-transporter-permease
MYENLILILDATLRVSTPLILAALAGLFSERSGIVNIALEGKILFAAFAAAAAASVTGSVWLGLLSAIAVACSLSMLHGFASITHKGDQIVSGVAINMLAVGLTVTLGRYWFGLGGQTPALLDSQRFLPITLPGADALADVPVLGLLYSELISGHNIIVYMALLSVPICWWVIFKTRFGLRLRAAGENPHAVDTAGISVAWIRYRALLVAGLLTGIAGAYLSTAHSAGFVPNMSAGKGFIALAALIFGKWRPVPVLFGCLLFGFLDAVAIRLQGTELPIIGEIPVQLIEVLPYILTVLLLAGFIGRAVGPKAVGIPYVKSR
>NC_008709.1|WP_011769689.1|1606440_1607574_+|ABC-transporter-permease
MNDSKIPVWVNVFVLPMVNILLAFAFSAIIFIAVDVDPIEAAQVMIRGAFGYQEGIGYTLYYATNFMFTGLAVAVAFSAGLFNIGGEGQAYMGGLGVGIACLALDSSLPFWAILPITMFASMAFGALWALIPAYLQAYRGSHIVITTIMFNFIAASLMVYLMVNVFKLDGQMAPVSRIIEDSAKLPMFHEMAAWIDWSFESSPLNLSFFIALVCCLLVWILLWRTRWGYAIRAMGSSPTAAEYGGINYKKLTIIVMLISGALSGLLGINEVQGYSHQLKLDFVAGYGFTGIAVCLIGRNHPVGIILASLLFGVLYQGGAELSFDFPNIDREMIQVIQALVVLFSGALAFMLVKPTEHFFVFLDKRKTLSLKQTNPET
>NC_008709.1|WP_011769688.1|1604872_1606444_+|ABC-transporter-ATP-binding-protein
MSTVSNEQRFALELRGIDKRFGAVHANNNIDLQVPVGTIHGIIGENGAGKSTLMNIIYGFYIADAGEIKIEGIPRKLLSSKEAISYGIGMVHQHFMLIDNFSVLENVILGAENGPLLKPSLAAARTELERLAKEYQLDVPIDALIEDLPVGLQQRVEILKALYRGAKILILDEPTGVLTPQETEHLFHIFDALRREGVTIILITHKLREILAATDNVSVMRQGAMVAHRKTADTNKEELAELMVGRKVRLKVDKKVANPKQILLSTDQLTYTDQMGVDRLKSVSINIKAGEIVGIAGVSGNGQSELINMLAGLLTPTSGSISIGNTHIDAGHPATPDSIRQLRVGHIPEDRLTMGLIKSFSAEESAILGHQNQPKYNGKILNKLKVITQECTRLMKEWDVRPQNPKLRSSLFSGGNQQKLIIAREVDQNPNILLIGQPTRGVDIGAIEFIHKRIVELRDKGKGILLVSVELDEIMTLADRIIVMFDGHIVGEVSAAQANEKILGMMMANIMPDELQATTGGKQ
>NC_008709.1|WP_011769687.1|1603700_1604705_+|BMP-family-ABC-transporter-substrate-binding-protein
MKKILSTTAAAVSLALCSFVANAADFKPAVAYDSAGKFDKSFNQAVFQNGATKFTEDTKIAVRDFVPSNDAQREQGLARLARGGYNPIVAVGFMYGSALEKIAKKYPDTQFVIIDSVVDLPNVKSLLFKEHEGSFLVGALAALKSENQKVGFVGGMDVPLIRKFACGYEQGAKYINKEVEVFQNMTGSTNAAWSDPARGAELTKSQFSQGVDVVFAAAGGTGVGVYQAAKDGGKYAIGVDSNQNHLHPGVMLTSMVKLVGLATYDIFKKAESGNFSAGIDVRGLKEKGVDWALDEYNRALVTPEMEAEINSVKAKIVTGEIVVHDYMADNSCQY
>NC_008709.1|WP_011769686.1|1601189_1602470_-|glucose-1-phosphate-adenylyltransferase
MPHRSDRYISNLTKDTYALVLAGGRGSRLFELTDSRAKPAVYFGGKFRIIDFSLSNCINSGINRIGVATQYKSHSLIRHINRGWGNFKANLSEFVEVLPASQGNNNDWYLGTADAVYQNIDIICAERPKYVLILSGDHVYRMDYGPLIAEHVANNADMTVCCLKATTEEAADSFGVMTVNADNKVIAFDEKPAQPNEIPDNPGQCLASMGNYLFNTDFLFEHLLNDYSSENSSRDFGHDIIPSIIKDNNVFSYAFKDPDSENQPYWRDVGTLDAFWEANMELVTPQPQLDLYDKAWPIWTYQEQLPPSKFIFDDDLRRGLAVDSTVSAGCIISGSTVRKSLLYSSVHTHSYSLIEESVVLHGSHVGERCKLKRVIVDSKCHIPAGLTIGYDREQDIENGFRVTEKGITLVTSQMLKALAKKQMIID
>NC_008709.1|WP_011769685.1|1599337_1601092_+|DEAD/DEAH-box-helicase
MYTLRPYQQDAVHATVHYFRQHSTPAVLTLSTGAGKSLIIAELARIAKGKVLVLAHVKELVEQNHSKYESYALKASIFSAGLGRKEIERQVVFASVQSIVNSLKEFSEAFSLLVIDECHRVPEDENSSYRRVISHLQKINPNIKVLGLTATPYRLGTGWIYQYHTRGQVRTQQARFFRDCIFDLPIRFLLDEKYLTEPKIMDMAVLGYDFSSLKSSVNGHFKTAELDSIVKKSQRVTPKIIEQVIETAKERLGVMIFASTVNHAREIMGYLSDENAALVIGDTPLDERDRIINAFKERTIKYLVNVSVLTTGFDAPHVDLIAILRPTASLSLYQQIVGRGLRLFPAKKDCLVMEFAGNCYDLYQPELGEPKPDSDSEIVTIPCPACRFNNNFWGKMDPAGFVIEHYGRQCQGYANNEEGERIICGYRFRAKFCELCGADNDIAARNCNNCDHVLVDPDKKLCEALKLKDALIIKCADFRLEPGKNKFGKPQLKVIYISEEGAELNEFWQLSTKAHKAEFLNKFINPHLIDRHHPFTETAPSKIVNNQHRLRPPEIVIARKKGRFWTISDKLFDLEQYQKELIQK
>NC_008709.1|WP_011769684.1|1598276_1599080_-|DUF2431-domain-containing-protein
MIIKKEWRILTVGDGDLSFSNALLSHQPAALTATVYDSFATMNEKYGDSFQQQLSAKNIPLIFEFDLKNPQSWTGLQKNSFDLVIFQFPLLPAFRSFTEYQERGKDVNFNTLNRRLLHLFLINSFKHFLDPQGQQLCYITSKDVKPYREWNIENSLNLQTDINYLGSINFEIADFPGYKVRNVERDKFVKDTKGTTYVWSTKKQHKISASLQGALYQDDNLCALCRAGPFTRSEDRLKHNQSKRHTQMMEFERLWLEDLKYLAEDAQ
>NC_008709.1|WP_011769683.1|1597927_1598224_+|DUF1244-domain-containing-protein
MTNDQQIQLEAAAFRRLLKHLDSRKDVQNIELMNTAGFCRNCLSKWMMAEAKELGVELNYDKAREHIYGMPYGEWKEKHQLPATADQMAVFEALQAKK
>NC_008709.1|WP_011769682.1|1597548_1597884_+|zinc-chelation-protein-SecC
MSDKFFFKGKKEKKPKHSSYGFNTKRAAKAGTEESPFLLLVNTPVRKAEIEQILQENNLIAKIEVKADVSENIAELEGFLNKPKTITVVAQPQRNEPCPCGSGKKYKKCCA
>NC_008709.1|WP_011769681.1|1596847_1597312_+|hypothetical-protein
MDLITLLIIDAWFAWIPAVGFAMVFNVPKKMLIYCAVGGAFAHSFRFLLMHFGMPIEWATLATSSSMGFLGLYWSRKHFIPRPVFTVASVIPMIPGSFAFTTVIGIVQLNSGGYSLELIQIVVENGLRTLFILAALSFGLALPSIMIYRGRPIV
>NC_008709.1|WP_011769691.1|1608829_1611076_+|U32-family-peptidase
MTQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQYECEVFLTLNIVILEHEIAGIVKLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQLTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHENAVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKIEGRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFIDNPRDNSFQHANDQNNAISVVQIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFSAKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIEKRFKSFKNSEYNLQDFDFDDFDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDLHLCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKPQRIVTNNTGVAYQANALNIEWIAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKNIARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIEDGCMLKCEKATTITNVKGFSFAVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFENLLAGVEEAQDQLDQRVTVSTNAQYRQGL
>NC_008709.1|WP_041766104.1|1613223_1614438_+|exonuclease-subunit-SbcD
MKILHTSDWHLGQYFMMKTRESEHLHFLNWLIEVVNKQQIDALIVAGDIFDSASPPSYARKLYSDFIVRLQKSSCRQLIIMAGNHDSIAVLNENKDLLKALDVSVLAGLSDDLNEHIIELKDDRQNTQALVCALPFLRAADVMRSVQGSSAADKQISLQQGIADTYQSIFELANAQCHEKALPIIATGHLTAVGCSVSDSVREIYIGTLTAFPAVLFPAFNYIALGHLHRAQKVQKTDHIRYCGSPIALSFDETRQQKNINIIEFDTNNALTVNETVIPVFQRMQVISGDLESVIEQLQELKKELAGESAWIEVKLKQAFYLSDVHALLNEQVQESQIEILKISSPTINEKNQYQAADKSTLDNLTPADLFQHRLQIEDSYSDQQREQLTKLFAEVCSEVEHKS
>NC_008709.1|WP_011769693.1|1614434_1618139_+|AAA-family-ATPase
MKILSIRFKNLNSLKGHWKIDFQDADFLENGLFVITGQTGAGKSTILDAICLALYQQTPRLDRITQSKNELMTRGTWECSAEVEFSVKGKGYRVFWEQKRARKSAAGKLQAPICELSLIEGDVLCTKSSEVLKQVIELTGLDFSRFTKSMLLAQGGFAAFLNASPRDRAELLEELTGTEIYCEIAKHVFERNKQAQAELDLLIKQADVLEVLSEEQVDELNKQVQLLAADKQTVQTDLKDLEGALLWLKNAQVLKEQVEAQLRLLTNAQQSAAEFKNKQQQIELAQQAKRLEQPYQNQLLNAEKIQSGETLLVENEQKNKILQAQLIECKNGAESLTAAQKSLQESHAVRHNKINEHLMPLDLAIGQLTGLCGEQQLAVDKQINTAVETQQTLNIRLAQQKTDNLALKTLNEGLQKQQAAHHLQESLPLIEQQFSFYIKQQSQLKDSLSGSSELQKKQSVLHNDLLDVHKQVKLSAQALHEKQLLLQQVQQHRESLLDSGQFSSAGQMNIILTEVFDQQSQNQQALSLTRQLDDSYARLAAVHKGSAELEQSIKGNQQALMVSEQQGLECKNSLLALQKLLKQEQVIAQLSDLKKHLQKDNPCPLCGSIEHPSVSNYQPVDIPETQIALSLQEQRLESIREQYSDAKNRIKTDTRQLAEYRLQAANLSQLLEKQLTEWQDSPYLSAFTYQQSSFADLSLLTQSLREKRFNIENLQKQIQQIDAQLPDLREVMQALTQKANDHDRLLQQLNNQHAVADNEDQRLAKEQQMLLAQLEENQQGICQQLPAELLKKQVEVEQLFNSPAAWIENQKSLILLYQSQQAQSITLQSLVDKQAHQIALQEQQYAQQQSVLQQLQTLWQSNQSQLTEQQRQRADEFGSQSQAQIRQLLESEKNELSGQLELAMASLLNVQGQSARLAGQLAEQKNTQAELQGNQQTLLTVFKKQLITSPFIDQTDFINARLAEEPLQVLLALQKQLHEQLLTEKTRLSSAQQSLEKHLKLSVTEEDPLVLENAQAANQEKSEVIGEQLVEKKGKLQADIRLKAQQQALLDQQVQQKDSAEQWAMLNKLIGSADGSKFRTFAQGLTLDNLVYLANKEMADLHQRYQLQRNLDEPLALQVIDLWQANAVRDVKTLSGGESFLVSLGLALALSNLVSHKTQIESLFLDEGFGTLDADTLEIALDALERLNATGKLIGVISHVDALKERINKQIHVSKGSGAGYSQLDKQYVFVEKS
>NC_008709.1|WP_011769694.1|1619910_1620342_+|hypothetical-protein
MINVNRIGSIIIALSLSLGSVEAVADIVLVVSAKNPVTTLSKNQVVDIFLGKANFFPDGHQALPIDQDEGSVAREEFYLKFAGKSSAQIKAFWSKIIFTGRGQPPPEVSNAVAVKKFIAKHPDAIGYIEHKWVDDSVKVILMK
>NC_008709.1|WP_011769695.1|1620690_1622289_-|GGDEF-domain-containing-protein
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKTILNLINIEQTAAEQTATALSHELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPTLKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLSFFQSQLQRDAISVGSPELDPSTGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVRRSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLSADEKLAAAQQKKQVYLWQAVASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEYLAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLDLDHFKNINDTLGHQAGDQLLQEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQECRITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL
>NC_008709.1|WP_011769696.1|1623138_1624194_-|SPFH-domain-containing-protein
MNIIDRVKYNGPGDVFAWRWPHDSLVWGTQVIVNQAQEAVFYKDGKALDVLGPGRHTLKSANIPLLEHLVNISFDNQSPFAAEIYYVNKAVNLNMKWGTQEPIPILEPVYNIYIPLRAFGQFGIKITDAKKFVTTLVGTVDEFDAEQILNYFRGHLMSRIKDFISKKVINDRISVLNISAHLNEMSAALQNDIMAEFKRFGIEIVNFYLNSINVPQNDDSVIRLKEILAKKAEFDIYGETYNTVKMFDVAEKAASNEGAGGVAGAGVGMGVGFGIGNQMMKLNSTSMENEQSTIMAGPSCSSCQQTIPQGAKFCPSCGSEQVQAQVKKFCVDCGTERSLDAKFCPGCGKKQ
>NC_008709.1|WP_011769697.1|1624356_1626042_-|TerB-family-tellurite-resistance-protein
MFPLIFILIIAAVVITGIIEGKKFQNKKIKNTIMRGVQKQALKKQLIQQNKIRHLDKHFSTALITSRVENAFYIIKQAWSEQDISYSRAFISDGISESYQIQFEIQKKQQHRRKIENLIITNSELVGIEADKHFETLHFKITSRADYPIEIKGRNKQTDSWVPLTTKTEYLTYVRLPGVQTRTQPGLMEGNCPNCGSTLKLSQSVRCQACRSLIGSGEYDWILAKITQEAQWRFQNAKRQINGVSDYQVVDPAFNIPLIEDRVSSVFWRMQKAWLIQNSDPLLAVAHPSYIEKFNQLSAAHFFDNVQLGLCEVSKVQFGEDIDKVYLLVKWQGNKISHTEKVSTAIGYYAHHLTMIRKSGVKSDIKKGLHSLHCYRCGAPQTNNYQDCCEYCNSSFNQGEQDWILQDFIPHIEHLVKMKGLEFAFQERAQVKSDRIFDPISLLSSLILVLFADGRVDKQEKHLLDQFVKNRRIPQSVLDKIIVAAENGQLDMLTPDETLDASDWLDKLIEMCLADGQVCVEERKLLLQFGEKFNFLAIDINLRIKRKRHQLYRRSRQTLKS
>NC_008709.1|WP_011769698.1|1626484_1627525_-|c-type-cytochrome
MNKYLIALATATLFSQSVMATTEMELPDRQAELPAHPKTKKVDQLVPRDLSTIPNTPFGAKVKQGYSLFVNSQTLRDKYVGNEQNCVNCHMQAGMKANSAPLWGAFMAYPAYRSKNDKVNTYGERIQGCFTYSMDGTPPAKDSPELVALSAYSYWLAMGGLFDQYDMQDRPISELSDAALQLGGNDPSFILPVEMKEDLPAGKRGTLAGRSYPKLDKPEQGPSIERGEIVYNTTCASCHGANGEGIKANGVQSFPPLWGKDSFNWGAGMHRVNTAAFFIYENMPLGKSIQIAKQQAWDVAAFMNSHERPQDPRFNGDLKATQEKYHNHQGYYGKTVNGKVIGSNAF
>NC_008709.1|WP_011769699.1|1627535_1628168_-|c-type-cytochrome
MSITKKIQRCVGLGTLFLLMSPAFATSVPSAAAVCTSCHLTTGMGSPNTKPNPAPMIAGQDPEYLTNQINHFLSGKRSDPLMTAMAVMVSDPQKKAEAVNYFASLSTPDIKNLEQRGDHVIIYDPARKLVYQGDWKRNIPACSTCHGASGIGVEAFPRLANQHPNYIEMQLTAWKNNTRSGDLNDVMGSIARQLTNTEISQLALYFANVK
>NC_008709.1|WP_157035317.1|1628251_1628554_+|hypothetical-protein
MSTYILAKMTESIEQSEYTFLFERLHGGCCDQEKVCSDIVGKPLFGFVAGEYNEQPQGIPYSFIDYLELVDWTGRVIRYDKCGAISGKNPNFLSVLGLER

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Crispr_ID: NC_008709_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_6

1651268-1651407

Orphan

Consensus_repeat	Method
CCTCCATTCTGGTCATCATTAATGTATTTTTTAAGCTAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_6

>merge|NC_008709|6|1651268-1651407|CRISPRCasFinder
CCTCCATTCTGGTCATCATTAATGTATTTTTTAAGCTAAACCACTGAGTCATCCATCAATAATTCCACGCCCAATAGAATCAGCACAGTGCCGGTTACACCTCCATTCTGGTCATCATTAATGTGTTTTTTAAGCTAAAC

>NC_008709|6|6|1651268-1651407|CRISPRCasFinder
CCTCCATTCTGGTCATCATTAATGTATTTTTTAAGCTAAAC	CACTGAGTCATCCATCAATAATTCCACGCCCAATAGAATCAGCACAGTGCCGGTTACA
CCTCCATTCTGGTCATCATTAATGTGTTTTTTAAGCTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769715.1\|1645307_1645817_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
NC_008709.1\|WP_011769719.1\|1648674_1649967_+\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
NC_008709.1\|WP_011769725.1\|1656568_1657678_+\|heat-shock-protein	unknown	unknown	gnl\|CDD\|226785
NC_008709.1\|WP_011769718.1\|1648372_1648570_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NC_008709.1\|WP_086004604.1\|1665892_1666925_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_008709.1\|WP_011769727.1\|1659880_1660273_-\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133383
NC_008709.1\|WP_011769713.1\|1644427_1644814_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NC_008709.1\|WP_041766116.1\|1644887_1645211_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|181914
NC_008709.1\|WP_011769729.1\|1663586_1663802_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769728.1\|1660392_1662783_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_008709.1\|WP_041767023.1\|1652409_1654650_+\|patatin	unknown	unknown	gnl\|CDD\|132844
NC_008709.1\|WP_011769720.1\|1650088_1650988_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|183967
NC_008709.1\|WP_049753020.1\|1664027_1665059_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NC_008709.1\|WP_011769717.1\|1647989_1648328_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NC_008709.1\|WP_011769724.1\|1655676_1656444_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NC_008709.1\|WP_011769712.1\|1643085_1644297_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_008709.1\|WP_011769723.1\|1655001_1655577_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NC_008709.1\|WP_011769711.1\|1642579_1643056_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NC_008709.1\|WP_011769726.1\|1658438_1659776_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NC_008709.1\|WP_011769716.1\|1646077_1647949_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769715.1\|1645307_1645817_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	6.17919e-56
NC_008709.1\|WP_011769719.1\|1648674_1649967_+\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
NC_008709.1\|WP_011769725.1\|1656568_1657678_+\|heat-shock-protein	gnl\|CDD\|226785	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair].	1.83224e-53
NC_008709.1\|WP_011769718.1\|1648372_1648570_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	3.45285e-30
NC_008709.1\|WP_086004604.1\|1665892_1666925_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.4585e-22
NC_008709.1\|WP_011769727.1\|1659880_1660273_-\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	4.67777e-51
NC_008709.1\|WP_011769713.1\|1644427_1644814_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	4.09403e-96
NC_008709.1\|WP_041766116.1\|1644887_1645211_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|181914	PRK09502, iscA, iron-sulfur cluster assembly protein IscA.	2.97777e-59
NC_008709.1\|WP_011769728.1\|1660392_1662783_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_008709.1\|WP_041767023.1\|1652409_1654650_+\|patatin	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	5.10937e-61
NC_008709.1\|WP_011769720.1\|1650088_1650988_+\|ROK-family-protein	gnl\|CDD\|183967	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.	7.49314e-91
NC_008709.1\|WP_049753020.1\|1664027_1665059_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NC_008709.1\|WP_011769717.1\|1647989_1648328_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.38883e-61
NC_008709.1\|WP_011769724.1\|1655676_1656444_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	5.36014e-136
NC_008709.1\|WP_011769712.1\|1643085_1644297_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_008709.1\|WP_011769723.1\|1655001_1655577_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	6.92604e-128
NC_008709.1\|WP_011769711.1\|1642579_1643056_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.12706e-75
NC_008709.1\|WP_011769726.1\|1658438_1659776_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.39152e-130
NC_008709.1\|WP_011769716.1\|1646077_1647949_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0

>NC_008709.1|WP_011769720.1|1650088_1650988_+|ROK-family-protein
MRYGLDIGGTKIEIVVFDQDFRVINTARIDTPSDNYLHFIQTVCQLVRQRDRQYSCIGSVGIGLPGVQETRSLKQISSNIPCLTGQHVAYDLAKELNRTVHIDNDSRCFALCEALTGAGKGNARVFAAVLGTGVGGGLVLDGKLYRGASGIAGEWGHMPISAHLVNQYGLFVKQCNCGLYGCLEHYISGTGLSNLCQYFLGEALQAEQFLKRVADKDAQALHVYQVFIDILCTGFANLQLTYDVDIIVLGGGLSNIKRLYADLQQRLPYFLFKGIQAVPIVQAQFGDSSGVRGAALLAN
>NC_008709.1|WP_011769719.1|1648674_1649967_+|aminopeptidase-PepB
MSNVFLVSLSFATASVIWGKGALLSFSEGHATIHLNKDNPLFRQVQAAARKLDGMSLEGIKLDGSLWDKELRWAFSQGFYNAKKGANIDFSELDPAQLQNLTAQKKIVEWVRETINLGPEALAPNVLCDKAVKLIESVLPEGIAISHKIIEGEDLLIENYQGIYQVGRGSTRPPCMLQLDFNPTGDPDAAVDYALVGKGITFDSGGYSLKPSGSMAIMKSDMGGAATLTGALALAIVNGLNKRVKLYLCCAENLVSGHAYKLGDVITYKNGVTVEVLNSDAEGRLVLADGLIAAQEDNAGIIIDAATLTGAAKMAVGRDYNCVLSMDDQLAELASRCAKQENEYLWRLPLEEFHFQQIGSSFADIANIHSGEGMAGASTAAAFLANFVINPQSNWIHFDLSGSYQLSENGLWATGGKGHGVRTISKMLFA
>NC_008709.1|WP_011769718.1|1648372_1648570_+|Fe-S-cluster-assembly-protein-IscX
MTLKWIDSLEIALALIDKYPKQDPTQLHFTALREWILSLDDFEDDPKYCSERILEAVQQCWIDEI
>NC_008709.1|WP_011769717.1|1647989_1648328_+|ISC-system-2Fe-2S-type-ferredoxin
MPKVIFLPHEELCPDGLVIEVKEGETILDIALRNSIHIEHACEKSCACTTCHVVVREGFDSLEESDELEDDMLDKAWGLEPDSRLSCQACVTDKDLVVEIPKYTVNMVSESH
>NC_008709.1|WP_011769716.1|1646077_1647949_+|Fe-S-protein-assembly-chaperone-HscA
MALLQIAEPGLSAAPHQHKLAAGIDLGTTNSLVATVRSGGAVTLVDHQQQDMLPSVVHYGEKNAQGDTQISVGYDARQHLLTDPLNTLVSVKRLIGKTLADLDKTHLPYQLSAHESGLAQINTRAGAINAVQASSEILKILSLRATESLQGDLDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLHAGVFEVLATGGDTALGGDDFDLTIVNWIKSEAGITGEISPQLQQELLQVARTSKQQLSDQQQVEIKLNTVPWSGTLDKNTFDGLIEKLVQKTLRACKRAIRDADINLDEIVEVVMVGGSTRVPLVRENVANFFKKELLTNIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVLPLSLGLETMGDLVEKVIPRNTTIPVARAQEFTTFKDGQTAMLIHVLQGEREMVGDCRSLARFVLTGIPPMAAGAAHVKVTFQVDADGLLSVNAMEKSSGVHASIEAKPSYGLSDEQVMEMLTDSMTFAEKDMQARMLIEQKVEVKRVIENLEAALDKDGAELLDLDEYQVIKHNINVLAKIAEGDDVHAIKEALEAIDKLTDHYASLRMDSSIKSALTGRAVDQI
>NC_008709.1|WP_011769715.1|1645307_1645817_+|Fe-S-protein-assembly-co-chaperone-HscB
MNYFDLFSLPVIFPIDQTRLSETYRELQKQYHPDKFVMQNDSERLRAMQKSTEINDAYQTLKNSCLRAQYLLLLAGLDIALEHKTLQDTAFLVQQMEWRETIAAFTEDDQDKMDEFALQLQQQVAGLESKIEVQLQNDELEATADSIRQLKFMLKLQIELVLIEEKLFD
>NC_008709.1|WP_041766116.1|1644887_1645211_+|iron-sulfur-cluster-assembly-protein-IscA
MAITMTEPAAKHVAAFLSNRGKGIGLRLGVKTSGCSGMSYVIEFVDVLNDDDQVFIDKGVKVVVDKKSLLYIDGTELDFVKEGLNEGFEFNNPNIDGECGCGESFNV
>NC_008709.1|WP_011769713.1|1644427_1644814_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKTYGCGSAIASSSLVTEWVKGKTLEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITDYKSKHPNA
>NC_008709.1|WP_011769712.1|1643085_1644297_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYSSTTPVDPRVAEKMMQYLTPGGEFGNPASRSHRFGWHAEEAVDVAREQIADLISGDPREIVFTSGATESNNLAIKGAAHFYVKKGKHIITAKTEHKAVLDTCRQLEREGYEVTYLDPKEDGIVTPQQLKEVLRPDTVLVSLMHVNNEIGVIQDIAGFGELCRANKTIFHVDASQSVGKIEIDTQALKVDLMSFSAHKIYGPKGIGALYVSRKPRVRLEAQMHGGGHERGMRSGTLPTHQIAAMGEAFRIAKEEMASDEVRILALRTRLLNGVNDMEEVYVNGSLENRIAGNINISFNYVEGESLVMALKDLAVSSGSACTSASLEPSYVLRAIGRDDELAHSSIRFSIGRFTTEEEIDYAINIIRKNIGRLRDMSPLWDMYKEGIDIKSIEWSH
>NC_008709.1|WP_011769711.1|1642579_1643056_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRGPGGGYKLGKERHQISVAMIIDAVNESVDVRKCGGKGGCAEDGVQCLTHSLWAQLSDRISTFLDNITLEELMVSDHVQHISGIQNNKFNQTEKLNVKSH
>NC_008709.1|WP_041767023.1|1652409_1654650_+|patatin
MVRYLLLLSLLLSLTVFADSQARPKIGLVLGGGGAKGAAHIGILKVLESNNVPIDFIAGTSIGAYIGGLYALGYNADEIENIMFNVDWDKGFSDFIPRENLQYADKQLRDEYNIALRLGYSDATLKTASGLLLGQSAFQLLKLSTGVVSEFESFDDLPIPYRAVAADIVTAETVVLNHGSLVQAMRASSTVPGVVEPTVIDGRLLVDGAIVNNMPVDVVKLMGADIIIAVDIGSPLLTQKEINLPIDVLDQLSNILTINTTKRQIDLLGEKDLLIRPDIGALSTSDFSQMPAAMALGEKSALENRDKIQSLSLYDKQYLQYTRHKKAKQAQWIKAASQPIVTIQYENDSNVAVEIIERQLGIRVGDLVSKEKLDDAISRVYALDLFDTVNAEFIDTNTGRMLVIKTRAKSWGPNYLHFGFSWQGDFSSDSQVSLDLAYILTDITDNGGQWINEVSLGWESMLATEFYQPLDTEHDYFSRARVEYRQEKYAQGQFTQNNSRPALTHHYGQVSLGLGNAYTDNGISEVGLLAEIGQMNFEDQSYDALDYYSMGTYLSFGFDNLNSINFPTQGNKLSLDFYLRKDQYAHPFLENTENSSLEINFDWRGAVGLGQHTFVGVTSLATVLSDDDFSIRASELGGFLNLSGYHKDEFIGAHKVFGAAVYQYDLGRSIFGNAGLPLYLGGSLEVGNVWGINDSVKIDELMTSGSLFLGTDTNFGPAVFGVGSGVALDRNKGNDIRAFFSLGKNW
>NC_008709.1|WP_011769723.1|1655001_1655577_+|D-sedoheptulose-7-phosphate-isomerase
MNLSIIKAELLEAEKVLQAFLADEQNLKNIEKAASLLADSFKNDGKVLSCGNGGSHCDAMHFAEELTGRYREHRPAYPAIAISDPSHISCVGNDYGYDAIFARYLEGVGRKGDVLFCLSTSGNSKNILNAIEVAKAKGISVIALTGKDGGKMSGLADVEIRVPHFGFADRIQEVHIKIIHILIYLIEKKMA
>NC_008709.1|WP_011769724.1|1655676_1656444_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFSGLIKRGGETGPHKDGWGITFYEGKGCRSFKDPTPSCHSPVAKLVKEYPIKSKSVISHIRQANRGAVSLENTHPFIRELWGKNWTYAHNGQLTGSEALPMGHDIPVGQTDSERAFCWILDQLRQDYSTEPADMPAMFKKVAGYADTLREMGVFNMLLSDGEYVMCYCTNNLSWITRRAPFGKARLIDEDMVIDFNEETSPDDVVTIITTRPLTNNERWTRMQEGEFCVFYFGERVL
>NC_008709.1|WP_011769725.1|1656568_1657678_+|heat-shock-protein
MAEPLKDVYNKVFILDLADQVLSVYPDFCCTAFQDVIFDAEWDDKALKARIRTITNALHRFLPAPFEQSIVILEKIAHRFSGLEALFFPDFVEKYGLDHYQSSLQALEYFTRYSSAEFAVRPFILKYPEAMMAQMFIWSQSDNEHVRRLASEGCRPRLPWAFALSEFKQDPQPLFIILEQLKDDPSEYVRRSVANNLNDISKDHPAVVIKVAQRWLQQADNNDLDNNNNLGNNRQRLVKHACRGLLKQANPIILSLFGFHRPENIKIIAFKVDDVVMMGDKLLFSFTLSSQAALGKLRVEFAIDFMKKNGSLAGKIFQISESTITKNCKQISKQFDFKKISTRQYYPGLHHLSVIVNGRLLSKKVFFLQ
>NC_008709.1|WP_011769726.1|1658438_1659776_+|dicarboxylate/amino-acid:cation-symporter
MTEKKQKMSLTKRVLLGMLIGIITGFLIRTFLPDNAFVNEYIVNGFFEVGGKIFIASLKMLVVPLIFVSLVCGTSSLKDISTLGRLGGKTIAFYLMTTAIAITFAIIMGNIFEPGVGTDLSTATTYASSEAPSLASVIINMFPTNPVNAMAEGNTLQIIVFAILFGIAVSASGQSGARIAAFFVDLNEVIMKLVVMLMNIAPYGVFFLMAKLFTEIGLDAISNLLSYFLVLSATLLLHGLITYGICFKVFTGLNPITFLKKMETAITFAFSTASSNATIPVTLETATKHLGISNKVASFTVPLGATINMDGTAIMQGVATVFIAQAFNIDLSLADYGAVILTATLASVGTAGVPGVGLIMLAMVLNQVGLPVEGIAIIMGVDRLLDMIRTAVNITGDCVVTCIVAKSEGEMNIDVFNDPKAGDKDEELRLHKLGLEAEAERVRNA
>NC_008709.1|WP_011769727.1|1659880_1660273_-|MerR-family-DNA-binding-transcriptional-regulator
MLSIGQAAKATGLSVKSIRHYEQIGLIPPPPRSENDYRCYPASLIKRLHFIKKTKEAGFNLKESKALLLLSENKTRSSADVKAITMQKIEELQHRIDQQQILLNSLKEISKQCHNDENAQCAIIDAFVKG
>NC_008709.1|WP_011769728.1|1660392_1662783_-|cadmium-translocating-P-type-ATPase
MTNSSLLKLPVYGMNCAGCASRLQSALNEIKGIEAEVNFALEAAHINFDPEIDHKNTLNTIMALLEQKGYQTDTETILLTAEGWSCANCANTTSKMLNAQTLVINAQANFATEKVQVQTIRGALKKADIDTFSSLIPYTLHISSKKNLKAENALKVAKQNTADKKALLILSFSILLSLPFLLNMVTMFVNNHISLLPGWLEFMLATPVQFIIGARFYKGAWLSLKNYSTNMDVLVVLGTSSAYFYSLVVFLGGLNQPLYFESSAMVITLVTLGKYLEHRAKQNTTTAINALAALRPDTAKVKKGKVFIDVNIDEVQLGDLIQVAIGEKVAVDGLVIEGQSYLDESLLTGESKPVLKQNNDPVIAGSINGDGVLLIKTTAVGESTSLSKIISLVENAQMSKAPIMKLVDKISAIFVPVVLLIATITFLTWYLLVGDFQQALISAVAVLVIACPCALGLATPTAVVVGTGVAAQKGILIKDIDTLQKAYKLQTIIFDKTGTLTQGKGEISTVYSVNQDNSTLLSLLSALQTGSKHPIANAIKNYCEKNAISPLDASEVQAISGQGIQGIVSGKLLVAGNISLMNDFSVKLPEGLVDKQKAATGSIVYVASDNVFLGYISIEDALRPESAEAIQQLQGRGLETIMLSGDKQSVVEHISRQLQMNSSFSELKPEQKLEKLTFLQNSKQVAMVGDGVNDAPALAQADVSIAMGTGSDVAKESASITLMRNDPRLVALAIDISKATWRKIQQNLFWAFIFNTVAIPAAALGYLNPAIAGGAMALSSITVLSNSILLKRFKSH
>NC_008709.1|WP_011769729.1|1663586_1663802_+|hypothetical-protein
MQNKTIEEIQLAASELGDLKIIETLTSFAIKKTLEEHELKIKSCLNAVLEERHGLSEFERIESLIEKRIVA
>NC_008709.1|WP_049753020.1|1664027_1665059_+|DNA-polymerase-IV
MDSFFASVEMRDEPSYRGIPLAVGGSELQRGVISTSNYEARKYGVRSAMATAHALRLCPHLTVVPGRIQVYKEISAQIRAIFERYTHLIEPLSLDEAFLDVTECCQLHGSATLIAEAIRNDIRRELNLTASAGVAPIKFLAKVASDMNKPDGQFVIPPDKVQSVIDTLPLEKIPGVGKVSLQKLNNAEFYACADIKNSNYYELLRRFGRMGEALWNFSHGIDNREVVTERERKSVGVERTFSINITTFEECWLFIERKLFPELDKRLGHATPERSIIKQGIKMKFADFQLTTIEHGHHELELEYFRELLCEIIKRQNGREIRLLGLSVVLKPEGQVKQLSLDL
>NC_008709.1|WP_086004604.1|1665892_1666925_-|IS630-family-transposase
MTTKKHDFTALAKTHQSVRMRLRFLALAHFQEGNSRTAIAKFLKVSRTSINKWISQYHQFGMDGLIDKKTTGRPFRLSNEQHKQLIHYVTESSKSELGGRLNGSDIQLYIEENFAVHYHLSSVYKLLHKLGFSWITSRSKHPKQSIEAQEDFKKIPIKTIFKIPGHIALDRVDIWLQDEARFGQQNTTTKLWAEKGSRPRAVKQQQFEYAYLFGSVCITNGASEALVVPYVNKDIMMTHLQQISDRTPIDRHAVIIMDGAGWHSDDIDADFKNLTIIKLPPYSPELNPIEQVWSWLRQHHLANRCFSGYDSIVETVCDAWNDFVSDSKRVIKMCTRDWMSLIS

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Crispr_ID: NC_008709_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_7

1656425-1656528

Orphan

Consensus_repeat	Method
TTGGAGAACGTGTTCTTTGATGGTGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_7

>merge|NC_008709|7|1656425-1656528|CRISPRCasFinder
TTGGAGAACGTGTTCTTTGATGGTGAATGTTTTTTTGATGGTGAATACTGCGCGTTATTAAGCATTATTTATTATGTTGGAGAACGTGTTTTTTGATGGTGAAT

>NC_008709|7|7|1656425-1656528|CRISPRCasFinder
TTGGAGAACGTGTTCTTTGATGGTGAAT	GTTTTTTTGATGGTGAATACTGCGCGTTATTAAGCATTATTTATTATG
TTGGAGAACGTGTTTTTTGATGGTGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769715.1\|1645307_1645817_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
NC_008709.1\|WP_011769719.1\|1648674_1649967_+\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
NC_008709.1\|WP_011769725.1\|1656568_1657678_+\|heat-shock-protein	unknown	unknown	gnl\|CDD\|226785
NC_008709.1\|WP_011769718.1\|1648372_1648570_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NC_008709.1\|WP_086004604.1\|1665892_1666925_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_008709.1\|WP_011769727.1\|1659880_1660273_-\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133383
NC_008709.1\|WP_011769721.1\|1651401_1652040_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_008709.1\|WP_041766116.1\|1644887_1645211_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|181914
NC_008709.1\|WP_011769729.1\|1663586_1663802_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769728.1\|1660392_1662783_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_008709.1\|WP_041767023.1\|1652409_1654650_+\|patatin	unknown	unknown	gnl\|CDD\|132844
NC_008709.1\|WP_011769720.1\|1650088_1650988_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|183967
NC_008709.1\|WP_011769717.1\|1647989_1648328_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NC_008709.1\|WP_011769735.1\|1668845_1669202_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_041767026.1\|1667515_1668046_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_049753020.1\|1664027_1665059_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NC_008709.1\|WP_011769723.1\|1655001_1655577_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NC_008709.1\|WP_011769734.1\|1668094_1668793_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NC_008709.1\|WP_011769726.1\|1658438_1659776_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NC_008709.1\|WP_011769716.1\|1646077_1647949_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769715.1\|1645307_1645817_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	6.17919e-56
NC_008709.1\|WP_011769719.1\|1648674_1649967_+\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
NC_008709.1\|WP_011769725.1\|1656568_1657678_+\|heat-shock-protein	gnl\|CDD\|226785	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair].	1.83224e-53
NC_008709.1\|WP_011769718.1\|1648372_1648570_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	3.45285e-30
NC_008709.1\|WP_086004604.1\|1665892_1666925_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.4585e-22
NC_008709.1\|WP_011769727.1\|1659880_1660273_-\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	4.67777e-51
NC_008709.1\|WP_011769721.1\|1651401_1652040_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.75619e-45
NC_008709.1\|WP_041766116.1\|1644887_1645211_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|181914	PRK09502, iscA, iron-sulfur cluster assembly protein IscA.	2.97777e-59
NC_008709.1\|WP_011769728.1\|1660392_1662783_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_008709.1\|WP_041767023.1\|1652409_1654650_+\|patatin	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	5.10937e-61
NC_008709.1\|WP_011769720.1\|1650088_1650988_+\|ROK-family-protein	gnl\|CDD\|183967	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.	7.49314e-91
NC_008709.1\|WP_011769717.1\|1647989_1648328_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.38883e-61
NC_008709.1\|WP_049753020.1\|1664027_1665059_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NC_008709.1\|WP_011769723.1\|1655001_1655577_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	6.92604e-128
NC_008709.1\|WP_011769734.1\|1668094_1668793_-\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	5.81672e-64
NC_008709.1\|WP_011769726.1\|1658438_1659776_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.39152e-130
NC_008709.1\|WP_011769716.1\|1646077_1647949_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0

>NC_008709.1|WP_011769723.1|1655001_1655577_+|D-sedoheptulose-7-phosphate-isomerase
MNLSIIKAELLEAEKVLQAFLADEQNLKNIEKAASLLADSFKNDGKVLSCGNGGSHCDAMHFAEELTGRYREHRPAYPAIAISDPSHISCVGNDYGYDAIFARYLEGVGRKGDVLFCLSTSGNSKNILNAIEVAKAKGISVIALTGKDGGKMSGLADVEIRVPHFGFADRIQEVHIKIIHILIYLIEKKMA
>NC_008709.1|WP_041767023.1|1652409_1654650_+|patatin
MVRYLLLLSLLLSLTVFADSQARPKIGLVLGGGGAKGAAHIGILKVLESNNVPIDFIAGTSIGAYIGGLYALGYNADEIENIMFNVDWDKGFSDFIPRENLQYADKQLRDEYNIALRLGYSDATLKTASGLLLGQSAFQLLKLSTGVVSEFESFDDLPIPYRAVAADIVTAETVVLNHGSLVQAMRASSTVPGVVEPTVIDGRLLVDGAIVNNMPVDVVKLMGADIIIAVDIGSPLLTQKEINLPIDVLDQLSNILTINTTKRQIDLLGEKDLLIRPDIGALSTSDFSQMPAAMALGEKSALENRDKIQSLSLYDKQYLQYTRHKKAKQAQWIKAASQPIVTIQYENDSNVAVEIIERQLGIRVGDLVSKEKLDDAISRVYALDLFDTVNAEFIDTNTGRMLVIKTRAKSWGPNYLHFGFSWQGDFSSDSQVSLDLAYILTDITDNGGQWINEVSLGWESMLATEFYQPLDTEHDYFSRARVEYRQEKYAQGQFTQNNSRPALTHHYGQVSLGLGNAYTDNGISEVGLLAEIGQMNFEDQSYDALDYYSMGTYLSFGFDNLNSINFPTQGNKLSLDFYLRKDQYAHPFLENTENSSLEINFDWRGAVGLGQHTFVGVTSLATVLSDDDFSIRASELGGFLNLSGYHKDEFIGAHKVFGAAVYQYDLGRSIFGNAGLPLYLGGSLEVGNVWGINDSVKIDELMTSGSLFLGTDTNFGPAVFGVGSGVALDRNKGNDIRAFFSLGKNW
>NC_008709.1|WP_011769721.1|1651401_1652040_-|LysE-family-translocator
MHILNFEAFLIAITILTLTPGLDTALVIRNASRSGGIDGCVTSLGICLGLFVHATLSAVGISAILLQSAQLFQVMKWCGAAYLIWLGLSSLRATFKGASHLNISTCTGVTFDPKRSLREGFLSNVLNPKTAIFYLAFLPQFINPDYSPFVQSLTLAGIHFLIAMVWQCSLSGAINSAKNWLKNTSIMTWMEGVTGTVLILLGIKLLMDDSVV
>NC_008709.1|WP_011769720.1|1650088_1650988_+|ROK-family-protein
MRYGLDIGGTKIEIVVFDQDFRVINTARIDTPSDNYLHFIQTVCQLVRQRDRQYSCIGSVGIGLPGVQETRSLKQISSNIPCLTGQHVAYDLAKELNRTVHIDNDSRCFALCEALTGAGKGNARVFAAVLGTGVGGGLVLDGKLYRGASGIAGEWGHMPISAHLVNQYGLFVKQCNCGLYGCLEHYISGTGLSNLCQYFLGEALQAEQFLKRVADKDAQALHVYQVFIDILCTGFANLQLTYDVDIIVLGGGLSNIKRLYADLQQRLPYFLFKGIQAVPIVQAQFGDSSGVRGAALLAN
>NC_008709.1|WP_011769719.1|1648674_1649967_+|aminopeptidase-PepB
MSNVFLVSLSFATASVIWGKGALLSFSEGHATIHLNKDNPLFRQVQAAARKLDGMSLEGIKLDGSLWDKELRWAFSQGFYNAKKGANIDFSELDPAQLQNLTAQKKIVEWVRETINLGPEALAPNVLCDKAVKLIESVLPEGIAISHKIIEGEDLLIENYQGIYQVGRGSTRPPCMLQLDFNPTGDPDAAVDYALVGKGITFDSGGYSLKPSGSMAIMKSDMGGAATLTGALALAIVNGLNKRVKLYLCCAENLVSGHAYKLGDVITYKNGVTVEVLNSDAEGRLVLADGLIAAQEDNAGIIIDAATLTGAAKMAVGRDYNCVLSMDDQLAELASRCAKQENEYLWRLPLEEFHFQQIGSSFADIANIHSGEGMAGASTAAAFLANFVINPQSNWIHFDLSGSYQLSENGLWATGGKGHGVRTISKMLFA
>NC_008709.1|WP_011769718.1|1648372_1648570_+|Fe-S-cluster-assembly-protein-IscX
MTLKWIDSLEIALALIDKYPKQDPTQLHFTALREWILSLDDFEDDPKYCSERILEAVQQCWIDEI
>NC_008709.1|WP_011769717.1|1647989_1648328_+|ISC-system-2Fe-2S-type-ferredoxin
MPKVIFLPHEELCPDGLVIEVKEGETILDIALRNSIHIEHACEKSCACTTCHVVVREGFDSLEESDELEDDMLDKAWGLEPDSRLSCQACVTDKDLVVEIPKYTVNMVSESH
>NC_008709.1|WP_011769716.1|1646077_1647949_+|Fe-S-protein-assembly-chaperone-HscA
MALLQIAEPGLSAAPHQHKLAAGIDLGTTNSLVATVRSGGAVTLVDHQQQDMLPSVVHYGEKNAQGDTQISVGYDARQHLLTDPLNTLVSVKRLIGKTLADLDKTHLPYQLSAHESGLAQINTRAGAINAVQASSEILKILSLRATESLQGDLDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLHAGVFEVLATGGDTALGGDDFDLTIVNWIKSEAGITGEISPQLQQELLQVARTSKQQLSDQQQVEIKLNTVPWSGTLDKNTFDGLIEKLVQKTLRACKRAIRDADINLDEIVEVVMVGGSTRVPLVRENVANFFKKELLTNIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVLPLSLGLETMGDLVEKVIPRNTTIPVARAQEFTTFKDGQTAMLIHVLQGEREMVGDCRSLARFVLTGIPPMAAGAAHVKVTFQVDADGLLSVNAMEKSSGVHASIEAKPSYGLSDEQVMEMLTDSMTFAEKDMQARMLIEQKVEVKRVIENLEAALDKDGAELLDLDEYQVIKHNINVLAKIAEGDDVHAIKEALEAIDKLTDHYASLRMDSSIKSALTGRAVDQI
>NC_008709.1|WP_011769715.1|1645307_1645817_+|Fe-S-protein-assembly-co-chaperone-HscB
MNYFDLFSLPVIFPIDQTRLSETYRELQKQYHPDKFVMQNDSERLRAMQKSTEINDAYQTLKNSCLRAQYLLLLAGLDIALEHKTLQDTAFLVQQMEWRETIAAFTEDDQDKMDEFALQLQQQVAGLESKIEVQLQNDELEATADSIRQLKFMLKLQIELVLIEEKLFD
>NC_008709.1|WP_041766116.1|1644887_1645211_+|iron-sulfur-cluster-assembly-protein-IscA
MAITMTEPAAKHVAAFLSNRGKGIGLRLGVKTSGCSGMSYVIEFVDVLNDDDQVFIDKGVKVVVDKKSLLYIDGTELDFVKEGLNEGFEFNNPNIDGECGCGESFNV
>NC_008709.1|WP_011769725.1|1656568_1657678_+|heat-shock-protein
MAEPLKDVYNKVFILDLADQVLSVYPDFCCTAFQDVIFDAEWDDKALKARIRTITNALHRFLPAPFEQSIVILEKIAHRFSGLEALFFPDFVEKYGLDHYQSSLQALEYFTRYSSAEFAVRPFILKYPEAMMAQMFIWSQSDNEHVRRLASEGCRPRLPWAFALSEFKQDPQPLFIILEQLKDDPSEYVRRSVANNLNDISKDHPAVVIKVAQRWLQQADNNDLDNNNNLGNNRQRLVKHACRGLLKQANPIILSLFGFHRPENIKIIAFKVDDVVMMGDKLLFSFTLSSQAALGKLRVEFAIDFMKKNGSLAGKIFQISESTITKNCKQISKQFDFKKISTRQYYPGLHHLSVIVNGRLLSKKVFFLQ
>NC_008709.1|WP_011769726.1|1658438_1659776_+|dicarboxylate/amino-acid:cation-symporter
MTEKKQKMSLTKRVLLGMLIGIITGFLIRTFLPDNAFVNEYIVNGFFEVGGKIFIASLKMLVVPLIFVSLVCGTSSLKDISTLGRLGGKTIAFYLMTTAIAITFAIIMGNIFEPGVGTDLSTATTYASSEAPSLASVIINMFPTNPVNAMAEGNTLQIIVFAILFGIAVSASGQSGARIAAFFVDLNEVIMKLVVMLMNIAPYGVFFLMAKLFTEIGLDAISNLLSYFLVLSATLLLHGLITYGICFKVFTGLNPITFLKKMETAITFAFSTASSNATIPVTLETATKHLGISNKVASFTVPLGATINMDGTAIMQGVATVFIAQAFNIDLSLADYGAVILTATLASVGTAGVPGVGLIMLAMVLNQVGLPVEGIAIIMGVDRLLDMIRTAVNITGDCVVTCIVAKSEGEMNIDVFNDPKAGDKDEELRLHKLGLEAEAERVRNA
>NC_008709.1|WP_011769727.1|1659880_1660273_-|MerR-family-DNA-binding-transcriptional-regulator
MLSIGQAAKATGLSVKSIRHYEQIGLIPPPPRSENDYRCYPASLIKRLHFIKKTKEAGFNLKESKALLLLSENKTRSSADVKAITMQKIEELQHRIDQQQILLNSLKEISKQCHNDENAQCAIIDAFVKG
>NC_008709.1|WP_011769728.1|1660392_1662783_-|cadmium-translocating-P-type-ATPase
MTNSSLLKLPVYGMNCAGCASRLQSALNEIKGIEAEVNFALEAAHINFDPEIDHKNTLNTIMALLEQKGYQTDTETILLTAEGWSCANCANTTSKMLNAQTLVINAQANFATEKVQVQTIRGALKKADIDTFSSLIPYTLHISSKKNLKAENALKVAKQNTADKKALLILSFSILLSLPFLLNMVTMFVNNHISLLPGWLEFMLATPVQFIIGARFYKGAWLSLKNYSTNMDVLVVLGTSSAYFYSLVVFLGGLNQPLYFESSAMVITLVTLGKYLEHRAKQNTTTAINALAALRPDTAKVKKGKVFIDVNIDEVQLGDLIQVAIGEKVAVDGLVIEGQSYLDESLLTGESKPVLKQNNDPVIAGSINGDGVLLIKTTAVGESTSLSKIISLVENAQMSKAPIMKLVDKISAIFVPVVLLIATITFLTWYLLVGDFQQALISAVAVLVIACPCALGLATPTAVVVGTGVAAQKGILIKDIDTLQKAYKLQTIIFDKTGTLTQGKGEISTVYSVNQDNSTLLSLLSALQTGSKHPIANAIKNYCEKNAISPLDASEVQAISGQGIQGIVSGKLLVAGNISLMNDFSVKLPEGLVDKQKAATGSIVYVASDNVFLGYISIEDALRPESAEAIQQLQGRGLETIMLSGDKQSVVEHISRQLQMNSSFSELKPEQKLEKLTFLQNSKQVAMVGDGVNDAPALAQADVSIAMGTGSDVAKESASITLMRNDPRLVALAIDISKATWRKIQQNLFWAFIFNTVAIPAAALGYLNPAIAGGAMALSSITVLSNSILLKRFKSH
>NC_008709.1|WP_011769729.1|1663586_1663802_+|hypothetical-protein
MQNKTIEEIQLAASELGDLKIIETLTSFAIKKTLEEHELKIKSCLNAVLEERHGLSEFERIESLIEKRIVA
>NC_008709.1|WP_049753020.1|1664027_1665059_+|DNA-polymerase-IV
MDSFFASVEMRDEPSYRGIPLAVGGSELQRGVISTSNYEARKYGVRSAMATAHALRLCPHLTVVPGRIQVYKEISAQIRAIFERYTHLIEPLSLDEAFLDVTECCQLHGSATLIAEAIRNDIRRELNLTASAGVAPIKFLAKVASDMNKPDGQFVIPPDKVQSVIDTLPLEKIPGVGKVSLQKLNNAEFYACADIKNSNYYELLRRFGRMGEALWNFSHGIDNREVVTERERKSVGVERTFSINITTFEECWLFIERKLFPELDKRLGHATPERSIIKQGIKMKFADFQLTTIEHGHHELELEYFRELLCEIIKRQNGREIRLLGLSVVLKPEGQVKQLSLDL
>NC_008709.1|WP_086004604.1|1665892_1666925_-|IS630-family-transposase
MTTKKHDFTALAKTHQSVRMRLRFLALAHFQEGNSRTAIAKFLKVSRTSINKWISQYHQFGMDGLIDKKTTGRPFRLSNEQHKQLIHYVTESSKSELGGRLNGSDIQLYIEENFAVHYHLSSVYKLLHKLGFSWITSRSKHPKQSIEAQEDFKKIPIKTIFKIPGHIALDRVDIWLQDEARFGQQNTTTKLWAEKGSRPRAVKQQQFEYAYLFGSVCITNGASEALVVPYVNKDIMMTHLQQISDRTPIDRHAVIIMDGAGWHSDDIDADFKNLTIIKLPPYSPELNPIEQVWSWLRQHHLANRCFSGYDSIVETVCDAWNDFVSDSKRVIKMCTRDWMSLIS
>NC_008709.1|WP_041767026.1|1667515_1668046_-|hypothetical-protein
MEHTLPSIRTLVKASVFAVVLGSIVLTTAILPAEYDIDPTGIGAALGLTQLANPSPVEQVKPVVKKASGKYQEHNNEVIIPAGKGLEYKLKINKGAAIRYSWKSTSEALFFDFHGEPKGDTTGYFESYAVSTGRKVKGTFTAPFEGSHGWYWKNNSSSPITVLVSTEGHYELIGIK
>NC_008709.1|WP_011769734.1|1668094_1668793_-|HupE/UreJ-family-protein
MFTKSNVISRVLLLLCFCGFSATLMAHGVDESTKGFLQANQGVSIIPYMYIGAKHMVTGYDHILFLIGVIFFLYRLKEVMLYVTLFTIGHSLTLMFGVLYDMGVNAYLIDAIIGFSIIYKGFDNLGGFKRVLGYQPNTKIAVMIFGLFHGFGLATKIQEFEIPQDGLIENLIAFNVGVELGQLSALILVLLALSYWRRHPSFLRFSTATNALLMSSGVMLVGLQLTGYFTTI
>NC_008709.1|WP_011769735.1|1668845_1669202_-|hypothetical-protein
MFKKIISTLVLTSAMLISNVAYSHSEHSNSSVEPPTTEQVITKATNDLIKLVDDKATIEGQILKPSWKSVDNKKMHYKSVRYYSISFTNTVESRTLYILLNAQGTYLGANFDGNFEQL

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Crispr_ID: NC_008709_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_8

1916548-1916675

Orphan

Consensus_repeat	Method
GAAAGCGAGTTAGGTTTCTAAGTCGCAAAACGTCTCTGCCTTTTATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_8

>merge|NC_008709|8|1916548-1916675|CRISPRCasFinder
GAAAGCGAGTTAGGTTTCTAAGTCGCAAAACGTCTCTGCCTTTTATTCTTGAATCTAAATTTACTCAAAACAGACAAAGTGAAAGCGAGTTAGGTTTCTAAGTCGCAAAACGTCTCAGCCTTTTATTC

>NC_008709|8|8|1916548-1916675|CRISPRCasFinder
GAAAGCGAGTTAGGTTTCTAAGTCGCAAAACGTCTCTGCCTTTTATTC	TTGAATCTAAATTTACTCAAAACAGACAAAGT
GAAAGCGAGTTAGGTTTCTAAGTCGCAAAACGTCTCAGCCTTTTATTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_041766215.1\|1909007_1909286_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379017
NC_008709.1\|WP_011769933.1\|1923181_1924378_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340967
NC_008709.1\|WP_083761740.1\|1916110_1916290_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366431
NC_008709.1\|WP_011769923.1\|1907326_1908088_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769934.1\|1925176_1926367_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NC_008709.1\|WP_011769932.1\|1922648_1923065_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_008709.1\|WP_011769928.1\|1914854_1915637_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NC_008709.1\|WP_011769930.1\|1919546_1920236_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NC_008709.1\|WP_041767068.1\|1929891_1932312_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NC_008709.1\|WP_011769931.1\|1920975_1922421_+\|bifunctional-2-methylcitrate-dehydratase/aconitate-hydratase	unknown	unknown	gnl\|CDD\|181845
NC_008709.1\|WP_041766225.1\|1913355_1913613_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368791
NC_008709.1\|WP_049752955.1\|1918259_1918598_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769937.1\|1929196_1929871_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_008709.1\|WP_011769936.1\|1927620_1929096_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_008709.1\|WP_011769925.1\|1909584_1909839_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807
NC_008709.1\|WP_157035328.1\|1913749_1914187_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_157035438.1\|1910091_1910313_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|166842
NC_008709.1\|WP_011769926.1\|1910941_1912774_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_008709.1\|WP_049752954.1\|1915870_1916068_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214628
NC_008709.1\|WP_011769929.1\|1916736_1918191_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_041766215.1\|1909007_1909286_+\|hypothetical-protein	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	1.28512e-17
NC_008709.1\|WP_011769933.1\|1923181_1924378_-\|MFS-transporter	gnl\|CDD\|340967	cd17409, MFS_NIMT_like, 2-nitroimidazole transporter and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli 2-nitroimidazole transporter (NIMT), also called YeaN, and similar proteins. NIMT confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. The NIMT-like subfamily belongs to the 2-nitroimidazole and cyanate transporters like (NIMT/CynX-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.60992e-158
NC_008709.1\|WP_083761740.1\|1916110_1916290_+\|hypothetical-protein	gnl\|CDD\|366431	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain. The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold.	2.69058e-05
NC_008709.1\|WP_011769928.1\|1914854_1915637_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	4.02851e-32
NC_008709.1\|WP_011769934.1\|1925176_1926367_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	2.27631e-133
NC_008709.1\|WP_011769932.1\|1922648_1923065_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.02749e-28
NC_008709.1\|WP_011769930.1\|1919546_1920236_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.82709e-89
NC_008709.1\|WP_041767068.1\|1929891_1932312_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	5.64625e-05
NC_008709.1\|WP_011769931.1\|1920975_1922421_+\|bifunctional-2-methylcitrate-dehydratase/aconitate-hydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
NC_008709.1\|WP_041766225.1\|1913355_1913613_-\|hypothetical-protein	gnl\|CDD\|368791	pfam06212, GRIM-19, GRIM-19 protein. This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homolog of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localization and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity.	0.00450598
NC_008709.1\|WP_011769937.1\|1929196_1929871_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	9.57825e-80
NC_008709.1\|WP_011769936.1\|1927620_1929096_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.96971e-10
NC_008709.1\|WP_011769925.1\|1909584_1909839_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	3.87095e-07
NC_008709.1\|WP_157035438.1\|1910091_1910313_+\|hypothetical-protein	gnl\|CDD\|166842	PRK00183, PRK00183, hypothetical protein; Provisional.	3.04555e-06
NC_008709.1\|WP_011769926.1\|1910941_1912774_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.60013e-120
NC_008709.1\|WP_049752954.1\|1915870_1916068_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	4.97559e-15
NC_008709.1\|WP_011769929.1\|1916736_1918191_-\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0

>NC_008709.1|WP_083761740.1|1916110_1916290_+|hypothetical-protein
MRSYWEIRSFHSTSGEVDMMIFAEAEGIAELNNLRNHLEQLPKLTRIITHSVLEERIRR
>NC_008709.1|WP_049752954.1|1915870_1916068_+|Lrp/AsnC-family-transcriptional-regulator
MDNLNQKILACLSDDARQSNAEIARKVGLSRSAVSERIHKMEDQQMILGYRVELKSPESKVAAYF
>NC_008709.1|WP_011769928.1|1914854_1915637_-|carbon-nitrogen-hydrolase-family-protein
MKITYIESPEGLLHEGTKWEELKQQIISEKPEVLVTNEMPFGSWLAVENEFNTADAEASISAHNYSVDALKKLNIPIVLSSRPVPVDNKLANEAFALVNGEYRFAHQKHYFPEESGFYETAWFRTGRTGFDVIKTDKLNVGFLLCTELMFNEWARSYRSQDAHLIVIPRASEQGFERWKTAVAMAAIVSGCYVVSANRVGKCGNKLIFGGKGFAFSPDGSLISETPSDNPVVSFHLDFGFVDNQQKQYPCYVHEIGLKYQ
>NC_008709.1|WP_157035328.1|1913749_1914187_-|hypothetical-protein
MSRGSSMQVDLNDIELAIEFVSSAYSFDNAAYLNSETGVIYYSGDAVDEELPDDIDKVSKYISIPSKRDLELGKPLVLSFVSKEMPDEIDNVYSMFRSHGAYSKFKSLLQSLEYVEKWYSYENAAVKNAITEWCKENSIECRTDI
>NC_008709.1|WP_041766225.1|1913355_1913613_-|hypothetical-protein
MSDYERSKLEVTLKILSPILAIGVFVWGIYTYLDTSEKQLAAQIAEAERNAATRRIEATLPYLEKQLDLYTEATQVTAIIATSKD
>NC_008709.1|WP_011769926.1|1910941_1912774_+|EAL-domain-containing-protein
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKELAFQNEEKDKRAAELVIANRKLAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQNEEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAFQNEEKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQRLESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLVSPATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLELTESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILKIDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFEALIRSGSEFN
>NC_008709.1|WP_157035438.1|1910091_1910313_+|hypothetical-protein
MCSEDKNVQYLIRILNGRVGIKQESRREWLEKSSIKPHDFPVVSNESRLLVKLGRNEPCHCRSRLKFKKCCLK
>NC_008709.1|WP_011769925.1|1909584_1909839_+|hypothetical-protein
MHGLYDATVDIDVALKLLEEAAEKNEPGAIFELAQYYLKSNKFEDAFEYLNMSASLGSPMAKFLLAKNIIDGVFKDENNNDVEQ
>NC_008709.1|WP_041766215.1|1909007_1909286_+|hypothetical-protein
MVWAVVGMALFRKYSMRQLVNQLDIILPNGEPYVASSAVTQARKKLGYQAIESISNQTQSLWHEKSEHPMWCGLSLLGGDCKKTEDECLLFS
>NC_008709.1|WP_011769923.1|1907326_1908088_-|PEP-CTERM-sorting-domain-containing-protein
MSKLLQAAIITASILSAHAANAALINILEDQTNAYAQVTYYPGGSKDCDSCLVTNPGTTIETFSGPIFPGGVFSGYHLTGDRTAYISDGNMIDSTSYSSINYAGRGILPGYEFTVNAGWMGGLGYGSGMALAETTMNLKFLVTEGDSSIYLFAEAMGGSAMLSLYDETSGILVWDFFYRGSADSAEIPLYSNHIYDLTGSLDIYTPFSGDPEARFAFEFEDKLTLASVPAPSTVTIIMLGLMGLGFQRVRENA
>NC_008709.1|WP_011769929.1|1916736_1918191_-|YdiU-family-protein
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQLPEGAESIALAYSGHQFGQLNPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGDGRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYRERGRPGAVVTRVAASHIRVGTFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGFIHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLAECLLPLINSEQDAAIASLEPLLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEVMQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWRGRLEQSADTIECSRLLMKEKNPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHTFCGT
>NC_008709.1|WP_049752955.1|1918259_1918598_+|hypothetical-protein
MRTRLDLLLLIVNLLCHRLGLNSRNSSKPPSSDPNREKSPKNNSSNKTSGQKGHNGSTLEREIDPDITHKSPVDTTLSPKGHYKKVGYETRQVVDIEFQRIVTQYQAQIFEN
>NC_008709.1|WP_011769930.1|1919546_1920236_-|VIT-family-protein
MSNDEEHKSHRVGWLRAAVLGANDGVVSTASLIIGIAAAGTGQENILIAGAAGLVAGAMSMAAGEYVSVSSQADTENADLALEKKSLQDNFSSEKVELAQIYQDRGLDPLLAEQVAEQLMAHDALGAHARDEIGISDTASAKPIQAAICSAGAFTIGAALPLFVAWTTPENFLIFAVAVFSLTFLAVLGGLAAQTGGASIRVGAFRVIFWGALAMGLTAAVGTIFGVRV
>NC_008709.1|WP_011769931.1|1920975_1922421_+|bifunctional-2-methylcitrate-dehydratase/aconitate-hydratase
MSTNVESNIKPDYDQPIKDITNYVTDYAIKNDHLYDTARFCLMDTLGCGLLALRYPECSKHLGPIVRGTIVPNGARVPGTQFEMDPIKAAFDIGCIIRWLDFNDTWLAAEWGHPSDNMGGILAVADYVSRQSLASGYEPLTMKDVLTAMVKAHEIQGVLALENSFNRVGLDHVILVKIATTAVVTQMLGGGSEEIMDALSQALVDGQSLRTYRHSPNAGSRKSWAAGDATSRAVRLAMITLSGEMGYPGVLSAKNWGFYDVLFGGKEFKLQQPYGEYVMDNVLFKISYPAEFHAQTAVECAANLHHKVVNCLTEIDRVELTTHQSAIRIISKQGALHNPADRDHCLQYMVAIGLIFGDLNADHYEDEVAADGRIDTLRSKMHVIEDKSYSEDYLDPEKRSIANAIQIFFKDGSSTEKVVMEYPIGHKLRREEGIPLLQAKFERNVKTRFPDKHARTIVEICSDKQEFEAMPVNEFMDLLVI
>NC_008709.1|WP_011769932.1|1922648_1923065_+|GFA-family-protein
MKINGRCHCGEVVYSAEIDENKVVNCHCTDCQVMSSGPFRSVVMSLPNAVTFSATQPKEYIKTAESGNKRAQGFCANCGTSLYATSVGEGNKVYGLRLGAIEQREQLIPKAQIWCRSAAPWLKELNSITAFDTVPPAK
>NC_008709.1|WP_011769933.1|1923181_1924378_-|MFS-transporter
MHPVLPTRSIFSSAILILGILFIAANLRGPITGIGPVLDQIIESFALSAPQAGMLTTLPLLAFAIASPMATSLAKKQGLEISLFVALVLIGLGLSSRLIDSAVVLYIGTAVIGAGIAIGNVLLPSLIKRDFPHKVAVMTSAYVLAMGIFAGSYSALLIPLAAYKEIGWQIALASYGLVTLISLLVWLPQLKLHTKPTRDITQPDTQGKIWHHALAWHITLCLGLNSFFTYVMIAWLPNILMEGGLDAQQAGVLHGAFQLASAVPGIVLIPLLGKLKDQRLLALGLALIGCFCSLGLLYLPNYAFIWSTTLGFCAGAIFILGLSYISLRTHHSGQASSLSGMAQCVGYLLAAIGPMFAGSLHTHFESWAPVLWLCALASLLCGVFGYLGGRNITLSESL
>NC_008709.1|WP_011769934.1|1925176_1926367_+|cell-division-protein-ZapE
MPDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGLYLWGDVGRGKTFLMDLFYDCLPQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLAKECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATSNIPIERLYENGLARHKFLPCIALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATPSAKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMISGVPQLGGQVRGWIKARGTEDGIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKVRPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG
>NC_008709.1|WP_011769936.1|1927620_1929096_+|FAD-dependent-oxidoreductase
MVNSQKSKKIAIIGGGIAGASVALYLSEIGLEVSLFEKGTSLVNGPPICHLHAGGNLYREIPDSQCVTLLKESIETLRLFPDSIDYRPTVIAVPKRDSGDALALLPRLKMLTQEYEQLIQQDASNEVLGAPKDYYRLFELEEMQKLAKLDEVAVPSTSEEWMIPIAKHVDLSTLKFPLVLVQEFGWNVFRLGASAALSLEKNPKSKILLKTKVNQLTHTEGKGWKVFFEQNQQESVEYFDYIINAAGFKSGEIDDAAGFHKQRIVEFKAAYVTQWEGTGSFWPEVIFHGERGTPHGMAQFTPYPDNVIQLHGMTEEITLFDEGLIANDKNSAQPKLGKSFLDKIYKGWSLDEVKLRTERAIDYMAEFIPSFSRAKVTDVPLFGAQQIPGDDANLRAAGVSFEDNNYARCEIVKASSVLTCADEITKRLITLGYVNKSVQGCREFAITNSISDEAITQRALTYTKQRGYPSGLAYRNIKQTFNQTELQVSFA
>NC_008709.1|WP_011769937.1|1929196_1929871_+|ABC-transporter-ATP-binding-protein
MSLIIESLNHQIIDGNKTRNLLSNIDLSVSQGECVALMGDSGSGKTTLLNLIAGLEPIQQGSIKVADLQLGQATEKALSELRKKQIGIIFQQYNLLSSLSVRDNIEFSARLAGRYDPLICNKLVNQLDIFSLLDHYPATLSGGEMQRVAIARALCAQPHLLLADEPTGNLDEHNGACVVTLLVELAKRQNTALLLVTHSVNVAQKMDKIYHLAKGKLSLVKGAF
>NC_008709.1|WP_041767068.1|1929891_1932312_+|ABC-transporter-permease
MVTPVAKIKKWFNQDLYLVLKTQVAEYKNKPLLHLAFILSLAIATSTLLSVLVLNHASREQYQQANSLLKNPVGFHIIAQQGSKLKKEDFFSLRKKGFTQITPVLTFRKKLTNGKYTTFTAIDLLALSLIKAEHFNSQSVSLTEEYARSLLLFNGGSKNQDKQFFLADNRAIPFSIRPAGQWQDQALLDITLAWKLFPEEGDFSYLLVAPLSEQSKEILESVLPTHLSLYKPWSVEERQGFADALHLNLNALAILGFIVSLFIAFQAANQAWRKRAQLTAQLRLLGVQLFTIKIAVIIEALFLVTMATVLGILLAIGLVSILLPLLGLTLKQLYSLNSSGHFIWQWSYNLWAFFISSLAVLLALMKQFKLLSSKYIARSAHLQRELFSARKHLIATFLLLALFILWPNNNWLQLMIKYGLLLMASIVFLPVFLQLTLFLGANLGKSFRFKFLIKDAYQQIKRRYLPLASFYLALTASIAAALLVNSFESAFVRYLDQQLNADIFIRHKAWQKETIEDWLGTQSALKEYTLFQHTWAKIETESVKLVNHQSLRQLESLLLKSSDHSDEEGCYINEQLALKKKLNIGGEIKITQGKQVYQCNVKGVYYEYGYPGYSVTVDNAPLTTHFSGWADTGFGLFFESGQLITKQEIITALKLDSQQVYQPQQIKILALEIFSQTFILIQAITAVLLLVACFGLFLSAQSLELARKSDLYILYSLGYDKKALFTHMLVQWLLLVLCSIILSWPIATLLANALVTEVLPASFGWSMPLMINIAPFVVSSLLGLLLLIPAVSIPLLKLNVRKNLCP

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Crispr_ID: NC_008709_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_9

1948487-1951262

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGTGCCCACGGGGATGAACCG	PILER-CR
GTGTTCCCCGTGCCCACGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGTGCCCACGGGGATGAACCG	CRT

45 spacers

cas2,cas1,cas8e,cas5,cas7,cse2gr11,cas6e,cas3

The CRISPR arrays of NC_008709_9

>merge|NC_008709|9|1948487-1951262|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGTGCCCACGGGGATGAACCGGTTATAGATTGGCGGGGGGATTCTAGGGACACGTGTTCCCCGTGCCCACGGGGATGAACCGACAAATTTTGTGCGGCTTGACCTGCTTTGCGGGTGTTCCCCGTGCCCACGGGGATGAACCGTAAAATCACAGAGTCATGGTTCGCTGGTCCTCGTGTTCCCCGTGCCCACGGGGATGAACCTCGCGTTGCCGCCGTAAAAATGGTTATCATAGTGTGTTCCCCGTGCCCACGGGGATGAACCGCCTTTTAACTTCGCTCTGTGTTCTGGATTGGTGTGTTCCCCGTGCCCACGGGGATGAACCGTGATGATTGGCTTGATATTTTGGCACGTTGGCGTGTTCCCCGTGCCCACGGGGATGAACCGTTAATGCAAGGCCACAACGTTTTTGGATCATGGTGTTCCCCGTGCCCACGGGGATGAACCGCCTTATTAGTTATTTAATTAATATATTTAATAGTGTTCCCCGTGCCCACGGGGATGAACCGCTTAGAGCGCGGAATGTATTAGAAAGTAAAAAGTGTTCCCCGTGCCCACGGGGATGAACCGTGCAATCTATCGAATCTATGAACACTGAAGCAGTGTTCCCCGTGCCCACGGGGATGAACCGCTCTTTCTGCCTTGGCAAGTTCTGCTAATTCTGTGTTCCCCGTGCCCACGGGGATGAACCGCTTATGTGATGCTTTCCAGTAATCGCCTAATAGTGTTCCCCGTGCCCACGGGGATGAACCGCATGAAATATATGAGAGAAAATCCGCCAAATCGTGTTCCCCGTGCCCACGGGGATGAACCGTTGCGAACAGTTGAAGATTATCAGCTATCAAAGTGTTCCCCGTGCCCACGGGGATGAACCGGGTAATAATAGTTTTTTTAGTTCAAACTGTTGGTGTTCCCCGTGCCCACGGGGATGAACCGGTGATCATTTCAAATGGCACTACATCACCACTGTGTTCCCCGTGCCCACGGGGATGAACCGTGCAGACATAAAATCATGTGGTTGTGGTAATGGTGTTCCCCGTGCCCACGGGGATGAACCGCGCGATATTTATTAATCTTTTGTATTGAAAAGGTGTTCCCCGTGCCCACGGGGATGAACCGCATGAACACGCACTATTGATGATTATAGCACCGTGTTCCCCGTGCCCACGGGGATGAACCGCTGGCTATACACTGTAAACGTTATGCAAAAATGTGTTCCCCGTGCCCACGGGGATGAACCGCAATATAACTATTAAAAACCAATCCCAATCATGTGTTCCCCGTGCCCACGGGGATGAACCGCGTAAAATGTTCCGGTTTAATTGCTACATTAGAGTGTTCCCCGTGCCCACGGGGATGAACCGTGCCATTTTAGGCGCTCTAACGCTGCCGCTTTGTGTTCCCCGTGCCCACGGGGATGAACCGCAAGCGTGCCTGATTTGAATATTGATCAGACAGTGTTCCCCGTGCCCACGGGGATGAACCGCGTTCATTCCGCGATACACGCGCCTTACGATAGTGTTCCCCGTGCCCACGGGGATGAACCGCTCTTGTGACCAAGGCACTATCGCCATGCACAGTGTTCCCCGTGCCCACGGGGATGAACCGCCTCACCCAGATGAACATAACCAAACTGATTGTGTGTTCCCCGTGCCCACGGGGATGAACCGTGATACTTGGTGCGGTAATCCGTAAAACTCAAGTGTTCCCCGTGCCCACGGGGATGAACCGTAGCAGAAATAGCAGCGTAGGCAATGGATTTTGTGTTCCCCGTGCCCACGGGGATGAACCGCTTTCAAGTCAGATCAGCCGCTTAGTTTCCCGGTGTTCCCCGTGCCCACGGGGATGAACCGTCAGATTGTATTTTGTGAGCGTGTGCAACTGTGTGTTCCCCGTGCCCACGGGGATGAACCGCAAAACAATTAGCAGTGATATGTTTATATAATGTGTTCCCCGTGCCCACGGGGATGAACCGTAAATTACAAGCCGCCAGGATGGCCTGAGACTGTGTTCCCCGTGCCCACGGGGATGAACCGGAGCAAAAACAGAACCCGCATTTTAACGAGGTGTGTTCCCCGTGCCCACGGGGATGAACCGGTATTGAGTTAGCAACCTGGCGAATGATGAGAGTGTTCCCCGTGCCCACGGGGATGAACCGCCAATAACTTGATCATGGTTTTGAGCGTGTATGTGTTCCCCGTGCCCACGGGGATGAACCGCAAGTACAACCTGATTAAGTTTAGCGACTCTGGTGTTCCCCGTGCCCACGGGGATGAACCGCGGTAAAGACAACAGTAATAAATCGCTGTTAAGTGTTCCCCGTGCCCACGGGGATGAACCGTATTAAGCCATAAATTAGCAGTGGCAAATAAAGTGTTCCCCGTGCCCACGGGGATGAACCGGTTCTCGAAAAGCTAGCAATTTGACTTAAATCGTGTTCCCCGTGCCCACGGGGATGAACCGCAATGACAAATTAAACGTAAAAGTAGTGCACCGTGTTCCCCGTGCCCACGGGGATGAACCGCAGATTGATGTTAATGCAATAACTGAAGATAAGTGTTCCCCGTGCCCACGGGGATGAACCGCAGCCGACCATGGGCGATAGGAAAATATCTGGGTGTTCCCCGTGCCCACGGGGATGAACCGATAGGATTATGTATCAAAGATCATCAGCAGCAGTGTTCCCCGTGCCTACGGGGATGAACCGCTTCAGTCACACTGCACTGTTCCGTGTTGTGAGTGTTCCCCGTACTCACGGGGATGAACCA

>NC_008709|9|1|1948487-1951201|PILER-CR
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTATAGATTGGCGGGGGGATTCTAGGGACAC
GTGTTCCCCGTGCCCACGGGGATGAACCG	ACAAATTTTGTGCGGCTTGACCTGCTTTGCGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAAATCACAGAGTCATGGTTCGCTGGTCCTC
GTGTTCCCCGTGCCCACGGGGATGAACCT	CGCGTTGCCGCCGTAAAAATGGTTATCATAGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTTTAACTTCGCTCTGTGTTCTGGATTGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATGATTGGCTTGATATTTTGGCACGTTGGC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTAATGCAAGGCCACAACGTTTTTGGATCATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTATTAGTTATTTAATTAATATATTTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTAGAGCGCGGAATGTATTAGAAAGTAAAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAATCTATCGAATCTATGAACACTGAAGCA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTTCTGCCTTGGCAAGTTCTGCTAATTCT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTATGTGATGCTTTCCAGTAATCGCCTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAAATATATGAGAGAAAATCCGCCAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTGCGAACAGTTGAAGATTATCAGCTATCAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GGTAATAATAGTTTTTTTAGTTCAAACTGTTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTGATCATTTCAAATGGCACTACATCACCACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAGACATAAAATCATGTGGTTGTGGTAATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGCGATATTTATTAATCTTTTGTATTGAAAAG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAACACGCACTATTGATGATTATAGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTGGCTATACACTGTAAACGTTATGCAAAAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATATAACTATTAAAAACCAATCCCAATCAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTAAAATGTTCCGGTTTAATTGCTACATTAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCCATTTTAGGCGCTCTAACGCTGCCGCTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGCGTGCCTGATTTGAATATTGATCAGACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTTCATTCCGCGATACACGCGCCTTACGATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTGTGACCAAGGCACTATCGCCATGCACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTCACCCAGATGAACATAACCAAACTGATTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATACTTGGTGCGGTAATCCGTAAAACTCAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAGCAGAAATAGCAGCGTAGGCAATGGATTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTTCAAGTCAGATCAGCCGCTTAGTTTCCCG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TCAGATTGTATTTTGTGAGCGTGTGCAACTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAAACAATTAGCAGTGATATGTTTATATAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAATTACAAGCCGCCAGGATGGCCTGAGACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GAGCAAAAACAGAACCCGCATTTTAACGAGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTATTGAGTTAGCAACCTGGCGAATGATGAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCAATAACTTGATCATGGTTTTGAGCGTGTAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGTACAACCTGATTAAGTTTAGCGACTCTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGGTAAAGACAACAGTAATAAATCGCTGTTAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TATTAAGCCATAAATTAGCAGTGGCAAATAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTCTCGAAAAGCTAGCAATTTGACTTAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATGACAAATTAAACGTAAAAGTAGTGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGATTGATGTTAATGCAATAACTGAAGATAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGCCGACCATGGGCGATAGGAAAATATCTGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	ATAGGATTATGTATCAAAGATCATCAGCAGCA
GTGTTCCCCGTGCCTACGGGGATGAACCG

>NC_008709|9|9|1948487-1951262|CRISPRCasFinder
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTATAGATTGGCGGGGGGATTCTAGGGACAC
GTGTTCCCCGTGCCCACGGGGATGAACCG	ACAAATTTTGTGCGGCTTGACCTGCTTTGCGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAAATCACAGAGTCATGGTTCGCTGGTCCTC
GTGTTCCCCGTGCCCACGGGGATGAACCT	CGCGTTGCCGCCGTAAAAATGGTTATCATAGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTTTAACTTCGCTCTGTGTTCTGGATTGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATGATTGGCTTGATATTTTGGCACGTTGGC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTAATGCAAGGCCACAACGTTTTTGGATCATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTATTAGTTATTTAATTAATATATTTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTAGAGCGCGGAATGTATTAGAAAGTAAAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAATCTATCGAATCTATGAACACTGAAGCA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTTCTGCCTTGGCAAGTTCTGCTAATTCT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTATGTGATGCTTTCCAGTAATCGCCTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAAATATATGAGAGAAAATCCGCCAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTGCGAACAGTTGAAGATTATCAGCTATCAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GGTAATAATAGTTTTTTTAGTTCAAACTGTTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTGATCATTTCAAATGGCACTACATCACCACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAGACATAAAATCATGTGGTTGTGGTAATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGCGATATTTATTAATCTTTTGTATTGAAAAG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAACACGCACTATTGATGATTATAGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTGGCTATACACTGTAAACGTTATGCAAAAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATATAACTATTAAAAACCAATCCCAATCAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTAAAATGTTCCGGTTTAATTGCTACATTAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCCATTTTAGGCGCTCTAACGCTGCCGCTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGCGTGCCTGATTTGAATATTGATCAGACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTTCATTCCGCGATACACGCGCCTTACGATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTGTGACCAAGGCACTATCGCCATGCACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTCACCCAGATGAACATAACCAAACTGATTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATACTTGGTGCGGTAATCCGTAAAACTCAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAGCAGAAATAGCAGCGTAGGCAATGGATTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTTCAAGTCAGATCAGCCGCTTAGTTTCCCG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TCAGATTGTATTTTGTGAGCGTGTGCAACTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAAACAATTAGCAGTGATATGTTTATATAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAATTACAAGCCGCCAGGATGGCCTGAGACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GAGCAAAAACAGAACCCGCATTTTAACGAGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTATTGAGTTAGCAACCTGGCGAATGATGAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCAATAACTTGATCATGGTTTTGAGCGTGTAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGTACAACCTGATTAAGTTTAGCGACTCTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGGTAAAGACAACAGTAATAAATCGCTGTTAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TATTAAGCCATAAATTAGCAGTGGCAAATAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTCTCGAAAAGCTAGCAATTTGACTTAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATGACAAATTAAACGTAAAAGTAGTGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGATTGATGTTAATGCAATAACTGAAGATAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGCCGACCATGGGCGATAGGAAAATATCTGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	ATAGGATTATGTATCAAAGATCATCAGCAGCA
GTGTTCCCCGTGCCTACGGGGATGAACCG	CTTCAGTCACACTGCACTGTTCCGTGTTGTGA
GTGTTCCCCGTACTCACGGGGATGAACCA

>NC_008709|9|1|1948487-1951262|CRT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTATAGATTGGCGGGGGGATTCTAGGGACAC
GTGTTCCCCGTGCCCACGGGGATGAACCG	ACAAATTTTGTGCGGCTTGACCTGCTTTGCGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAAATCACAGAGTCATGGTTCGCTGGTCCTC
GTGTTCCCCGTGCCCACGGGGATGAACCT	CGCGTTGCCGCCGTAAAAATGGTTATCATAGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTTTAACTTCGCTCTGTGTTCTGGATTGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATGATTGGCTTGATATTTTGGCACGTTGGC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTAATGCAAGGCCACAACGTTTTTGGATCATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTTATTAGTTATTTAATTAATATATTTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTAGAGCGCGGAATGTATTAGAAAGTAAAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAATCTATCGAATCTATGAACACTGAAGCA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTTCTGCCTTGGCAAGTTCTGCTAATTCT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTATGTGATGCTTTCCAGTAATCGCCTAATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAAATATATGAGAGAAAATCCGCCAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	TTGCGAACAGTTGAAGATTATCAGCTATCAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GGTAATAATAGTTTTTTTAGTTCAAACTGTTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTGATCATTTCAAATGGCACTACATCACCACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCAGACATAAAATCATGTGGTTGTGGTAATG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGCGATATTTATTAATCTTTTGTATTGAAAAG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CATGAACACGCACTATTGATGATTATAGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTGGCTATACACTGTAAACGTTATGCAAAAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATATAACTATTAAAAACCAATCCCAATCAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTAAAATGTTCCGGTTTAATTGCTACATTAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGCCATTTTAGGCGCTCTAACGCTGCCGCTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGCGTGCCTGATTTGAATATTGATCAGACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGTTCATTCCGCGATACACGCGCCTTACGATA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTCTTGTGACCAAGGCACTATCGCCATGCACA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCTCACCCAGATGAACATAACCAAACTGATTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TGATACTTGGTGCGGTAATCCGTAAAACTCAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAGCAGAAATAGCAGCGTAGGCAATGGATTTT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CTTTCAAGTCAGATCAGCCGCTTAGTTTCCCG
GTGTTCCCCGTGCCCACGGGGATGAACCG	TCAGATTGTATTTTGTGAGCGTGTGCAACTGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAAACAATTAGCAGTGATATGTTTATATAAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	TAAATTACAAGCCGCCAGGATGGCCTGAGACT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GAGCAAAAACAGAACCCGCATTTTAACGAGGT
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTATTGAGTTAGCAACCTGGCGAATGATGAGA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CCAATAACTTGATCATGGTTTTGAGCGTGTAT
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAAGTACAACCTGATTAAGTTTAGCGACTCTG
GTGTTCCCCGTGCCCACGGGGATGAACCG	CGGTAAAGACAACAGTAATAAATCGCTGTTAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	TATTAAGCCATAAATTAGCAGTGGCAAATAAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	GTTCTCGAAAAGCTAGCAATTTGACTTAAATC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAATGACAAATTAAACGTAAAAGTAGTGCACC
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGATTGATGTTAATGCAATAACTGAAGATAA
GTGTTCCCCGTGCCCACGGGGATGAACCG	CAGCCGACCATGGGCGATAGGAAAATATCTGG
GTGTTCCCCGTGCCCACGGGGATGAACCG	ATAGGATTATGTATCAAAGATCATCAGCAGCA
GTGTTCCCCGTGCCTACGGGGATGAACCG	CTTCAGTCACACTGCACTGTTCCGTGTTGTGA
GTGTTCCCCGTACTCACGGGGATGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011769956.1\|1953935_1954175_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NC_008709.1\|WP_011769949.1\|1945661_1947128_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|236613
NC_008709.1\|WP_011769953.1\|1951997_1952849_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769947.1\|1943987_1945001_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_008709.1\|WP_011769955.1\|1953762_1953936_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NC_008709.1\|WP_049752958.1\|1952991_1953573_-\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NC_008709.1\|WP_011769943.1\|1939284_1940046_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769951.1\|1948112_1948409_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_008709.1\|WP_011769957.1\|1955470_1956394_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769961.1\|1959487_1959778_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|377094
NC_008709.1\|WP_011769945.1\|1942971_1943514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_008709.1\|WP_011769960.1\|1959041_1959479_+\|ubiquinone-binding-protein	unknown	unknown	gnl\|CDD\|182678
NC_008709.1\|WP_011769946.1\|1943523_1943955_+\|hypothetical-protein	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NC_008709.1\|WP_011769942.1\|1937432_1938050_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011769944.1\|1940497_1942969_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_008709.1\|WP_011769948.1\|1945021_1945675_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_008709.1\|WP_011769950.1\|1947182_1948100_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_008709.1\|WP_011769959.1\|1958393_1958879_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_008709.1\|WP_011769958.1\|1956482_1957733_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NC_008709.1\|WP_011769952.1\|1951277_1951847_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011769956.1\|1953935_1954175_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	6.84722e-16
NC_008709.1\|WP_011769949.1\|1945661_1947128_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NC_008709.1\|WP_011769947.1\|1943987_1945001_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.69055e-103
NC_008709.1\|WP_049752958.1\|1952991_1953573_-\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	6.53633e-15
NC_008709.1\|WP_011769955.1\|1953762_1953936_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	1.69796e-08
NC_008709.1\|WP_011769958.1\|1956482_1957733_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.21577e-167
NC_008709.1\|WP_011769951.1\|1948112_1948409_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.33795e-60
NC_008709.1\|WP_011769959.1\|1958393_1958879_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	8.03909e-83
NC_008709.1\|WP_011769961.1\|1959487_1959778_+\|RnfH-family-protein	gnl\|CDD\|377094	pfam03658, Ub-RnfH, RnfH family Ubiquitin. A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.	2.15611e-42
NC_008709.1\|WP_011769945.1\|1942971_1943514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.14997e-56
NC_008709.1\|WP_011769960.1\|1959041_1959479_+\|ubiquinone-binding-protein	gnl\|CDD\|182678	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin.	3.7161e-69
NC_008709.1\|WP_011769946.1\|1943523_1943955_+\|hypothetical-protein	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.6452e-18
NC_008709.1\|WP_011769948.1\|1945021_1945675_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.10697e-50
NC_008709.1\|WP_011769944.1\|1940497_1942969_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NC_008709.1\|WP_011769950.1\|1947182_1948100_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.05794e-148
NC_008709.1\|WP_011769952.1\|1951277_1951847_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	4.82921e-46

>NC_008709.1|WP_011769951.1|1948112_1948409_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVTVVTEAIPPRLRGRLAVWLLEVRAGVYVGEVSGRVREMIWYQINELAENGNVVMAWSTNTESGFDFVTYGENRRMPVELDGLRLVKFKPEIKEN
>NC_008709.1|WP_011769950.1|1947182_1948100_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFIPLKPIPIKARTSMIFVGMGQIDVKDGAFVVIDKNGERMHITVGTIACIMLEPGTRVSHAAIKLASICGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQAKLALDAELRLKVVRKMFELRFGDEAPQRRSVEQLRGIEGARVKKTYQLLAKQYGVEWHGRRYDRKDWDKGDTINQCISAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDISDIIKFETVVPVAFQVAAKKTYSPDRDVRIACRESFRKTKILKRLIPLIEEVLGAGEIKPPEPYENAQPPAIPMPETIGDDGHRTS
>NC_008709.1|WP_011769949.1|1945661_1947128_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLKDDFISTSQGKISLKTILTGEQNYQLQYYFDEIQLAMLQLLSSLSTVVLQPTVQELKDYLKNGLTPEQYEAALDKVESQWFESDCFMQSKPPTNAKWPDAPITKLLSGIECGTSANAMGLFSEIEQAEISCTDCMHALNYNLHMNIKGECFGPTGATGIRGGGAISTLIAGENLKQTLLNNTIAKDYFNDYAQLDSDAEQRPMWVAPLSGSVYQASKIGINRGLFALAYHIGFNIEDKPCLCDVCGSESEQSVKTFNREKYKGNYGSTKNGREAGAGWWPHPYTPRTIKEEGAFAVCARDQNWQSWQELGSYIVGKETDKATLEPAYIIKQFQYMKTPRQTNLLVGGNIADQGGITGRVYDLYSMPSSLNKHLSKVTQVLDSGLDQKNRLSQAFNKMFGAGYDKNFVGGIKENAMYRFTANAQQIIQRTLLDVERKEATELRKTAVIELKQEAQRIFMGVQRKYQHDLPLFKALVKGESALYRK
>NC_008709.1|WP_011769948.1|1945021_1945675_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLKIAVQVNLSGEKMVDYHTVQHFRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLVNSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNHGEQGQIFSDISGDNQLAIVQVRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA
>NC_008709.1|WP_011769947.1|1943987_1945001_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAEKSIRTNKFDELLDLCKEAMPETDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSIREAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPRNVEAAMSVAHSLTTHSADIEVDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRCFAQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYEKLTNAYELDSKAIALDLTDSAQSKQINLVNKISDIRF
>NC_008709.1|WP_011769946.1|1943523_1943955_+|hypothetical-protein
MYQRIYQAYQLLSNGDKADLKRCNLKKLADSPAYFRVLKFSRAKDTPQTQRILYLLVGLKMSDDQPGVNVANALLNAGVKEAQIIQITRSGDNGIDYLKRQLVRCENIKLESIGKLAQFWGDNARRNLLKNFILSANDTQTAS
>NC_008709.1|WP_011769945.1|1942971_1943514_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSEQAKVLASKSFLAEIKQDAFYKFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANVTVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALVMGIGRKKHAGAGLLSLARTQ
>NC_008709.1|WP_011769944.1|1940497_1942969_+|CRISPR-associated-helicase/endonuclease-Cas3
MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKRICLFFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYYSHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPDADDELLELDEQARKEWVEFSLDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVDTGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANGLFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSNKRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNKTITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIELFHARFTFGDRKKREDQVLKNYDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGYVYQNSRLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTARSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALAKKHAKGIKDERYYCYKAVVDKDIIYNEMGFITTDLIDELTAGS
>NC_008709.1|WP_011769943.1|1939284_1940046_-|hypothetical-protein
MLTDWEALTQRFINEHARNEISVKAWCKQTNINYASARRHIKVNEKNTQYRVRKLRAAQNDKCTRKTTVPKSYKHKIQSVNKNKSDTFANTALLKKPPPQKRVASLGNQNARKFGHYSTFLCTNEDVRRYLSASTASLSDELNLVRIQLLHTMVIVKQIDSDLKDDITAAKKNNLQIMHDKFYIHEDNQIARIESLEMSLLKQEKMKADTERAIILTNKFELQIDKLNREIAANKPKIDEVYYEIMKLDGPIE
>NC_008709.1|WP_011769942.1|1937432_1938050_+|hypothetical-protein
MKVFTSVLCLFGLITVLTGCATPGPLVNSSITPEVRNAIAYCSAGIASETGLKIEAAIVENGGKIDTVLHDKITGVFASIPGVTEANAVASQKLYMDCLDKKTSQEKTSSIEACHAKLACEIDTMQQFCNCRTIITEMTIEKGYSDSFGDKMLKERCYSGQYDLRECWNGEDVNMARASCTVLLQSNGRELPKAMTGTCLTKQKD
>NC_008709.1|WP_011769952.1|1951277_1951847_-|recombinase-family-protein
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKLESGDTLIVLKLDRLGRDNINVQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAFAEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQDAKATGISQSKASKATGLSIATVKRYWNKN
>NC_008709.1|WP_011769953.1|1951997_1952849_-|hypothetical-protein
MSIIKEEINSCSHNLIGYKTERLTVLEYAGCEVVTNKKTGKKSRRHQWKCVCTCGHTTIKSTSSLVYHKVKSCGCQKSEVTAARNKTHGMVGTPEYQSWRGMKERCSNPKGIHWNIYGGKGIKICDRWVGDFLAFYEDMGQRPEGMSLDRIDSNGNYCPENCRWADANTQAFNTCRTIQITFEGETLSLYRMAEKYGQGEATVRYRLNQGWSIKEALLLPVGDQRIYNKHSKRLEYDGQFLTVKEHAERYGLNIVTVRTRIGRGYSLERVFAPAMKRKKKTLS
>NC_008709.1|WP_049752958.1|1952991_1953573_-|inovirus-type-Gp2-protein
MAKYKSESPVYRTKGKIYKVNCDRGKPIFTHQMGKIIEQVENMISWHSRVFVYVFDLHVADFSLDNKYIAAFISKLRFHFKQHYKIKRLGYAWCREQNTSPRQHYHMAIIVDGSKIQNPIRLFHKIKLMWDEVTLGGHLHGLENCYYNIKRDTEINKAEAIERLSYQAKVWTKDKNTARANDYGTSRIRPKPT
>NC_008709.1|WP_011769955.1|1953762_1953936_-|AlpA-family-phage-regulatory-protein
MKLLTTDEVTKIVGRSRGTLFRWWKKGIFPEPLLYNGRTLGWNEEAVQQWLNKKEQG
>NC_008709.1|WP_011769956.1|1953935_1954175_-|AlpA-family-phage-regulatory-protein
MTTKSKKIIRLPEVKDMTGLARATIYKKMATDDFPMSINLSSGCGRAVGWVEIEILDWINERIEERDQQIEAKKNSENC
>NC_008709.1|WP_011769957.1|1955470_1956394_-|hypothetical-protein
MNKKNRPQIQKREYSISDAAKVLETSEEFLIKLIVDRKIRACVLFVDFHPYQSHSAVFVSTDIDTTEANKQWLKRDELDTNTVEDEFGFHPENSDGEDLDNCPLNRIFGTYHSKIQVSFFNMDENGRMGEILYCWIKGLWEIEPLDEIKELITHSSETPILINVVPYMPEGLYHYEVDKIHGAYLGGFAVDVAVQDIRISYDDMQRLHAHLDGGEELVKLDGNKMPLKELNELNELKERNPRSPSIQASTLLVQILDAYCPFADELFNEPSAAMELLEKDFAFKLLKAPKMSAKTLYRMIKAGKERL
>NC_008709.1|WP_011769958.1|1956482_1957733_-|tyrosine-type-recombinase/integrase
MAVKVIPLTDKKINSAKIHDKDYVLSDGDGLQLRVRSNGSKIWNFNYKHPQTKKRININIGKYPGVALLNARKKALSYRDLLAQDIDPKENREKKLAEDKKITEHTVKNVALEWYELKKHSVTADYATDIWRSLDRHIFPLLENTPISSVTAPMVIDLLRPIEAKGSLETVKRLTQRLNEIMTYAVNGGLIFANPLSGIKANFKKPKKSHMLALTPDELPELMMTIANASIKRTTRCLIEWQLHTMTRPSESAGAKWEEIDIEAKTWTIPPERMKKRREHVVPLTDQALTLLETMRPISGHREYLFPSDRNPRTHANSETANTALRRMNFGGRLVSHGLRSIASTTLNEQGFEADLVEAALAHVGDNQVRNAYNRTDYLERRRPMMYWWSEHIEKASQGNLSVTGFKSLKVIGDNF
>NC_008709.1|WP_011769959.1|1958393_1958879_-|SsrA-binding-protein-SmpB
MAKKNSKTKNNDNTIARNKRASHDYHLEERFEAGLELQGWEVKSLRAGKANIADSYIFLKNGEAWLLGATFPPLLVASSHVVCDPMRYRKLLLNRRELDNLVGKVERQGYSIIPISLYWKHAWVKISFALAKGKQEHDKRADVKDREWKVDKERMMKHSVR
>NC_008709.1|WP_011769960.1|1959041_1959479_+|ubiquinone-binding-protein
MAQVSRSALLMYSAEEMYQLVNDVNAYPEFLPGCVDANILTNNNNVMRASVEVSKAGISQTFTTENILVNGQSILMNLVDGPFKHLKGGWTFSKLDEQACKINLDLEFEFNSSLAELAFGRIFNELVGSMVKSFSSRAKVVYGIR
>NC_008709.1|WP_011769961.1|1959487_1959778_+|RnfH-family-protein
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRADKLSSIVKAGDRIEIYRPLTADPKEMRKLRAAKMSKK

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Crispr_ID: NC_008709_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_10

2053485-2053602

Orphan

Consensus_repeat	Method
GCACGTTTAGCGGCAAAGCTTGTCAGTGCGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_10

>merge|NC_008709|10|2053485-2053602|CRISPRCasFinder
GCACGTTTAGCGGCAAAGCTTGTCAGTGCGGGTATCGATATTAATTTAAGCAGCTTTTTCTATGGTTCGATTATCCAACCCGTGTGCACGTTTAGCGGCAAAGCTTGTTAGTGCGGGT

>NC_008709|10|10|2053485-2053602|CRISPRCasFinder
GCACGTTTAGCGGCAAAGCTTGTCAGTGCGGGT	ATCGATATTAATTTAAGCAGCTTTTTCTATGGTTCGATTATCCAACCCGTGT
GCACGTTTAGCGGCAAAGCTTGTTAGTGCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770041.1\|2063839_2064664_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_008709.1\|WP_083761743.1\|2037530_2038433_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NC_008709.1\|WP_011770033.1\|2039177_2040329_-\|MlaE-family-lipid-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223838
NC_008709.1\|WP_157035335.1\|2040735_2040888_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770043.1\|2066096_2066780_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|376839
NC_008709.1\|WP_049752960.1\|2070436_2070658_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770038.1\|2053686_2059602_+\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|238429
NC_008709.1\|WP_011770036.1\|2043052_2051038_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|274311
NC_008709.1\|WP_011770039.1\|2059701_2061297_+\|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240093
NC_008709.1\|WP_011770040.1\|2062757_2063660_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_008709.1\|WP_049752961.1\|2070676_2070976_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770035.1\|2042142_2042970_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379154
NC_008709.1\|WP_011770042.1\|2064653_2066093_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|224062
NC_008709.1\|WP_041766266.1\|2061449_2061695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275209
NC_008709.1\|WP_011770032.1\|2038416_2039181_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_008709.1\|WP_011770034.1\|2040926_2041874_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NC_008709.1\|WP_041766263.1\|2034757_2034979_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770030.1\|2036938_2037541_-\|ABC-transporter-auxiliary-component-like-protein	unknown	unknown	gnl\|CDD\|225759
NC_008709.1\|WP_011770044.1\|2069521_2070232_-\|lipoate--protein-ligase-A	unknown	unknown	gnl\|CDD\|319742
NC_008709.1\|WP_011770029.1\|2035780_2036554_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770041.1\|2063839_2064664_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.35109e-49
NC_008709.1\|WP_083761743.1\|2037530_2038433_-\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	4.27888e-25
NC_008709.1\|WP_011770033.1\|2039177_2040329_-\|MlaE-family-lipid-ABC-transporter-permease-subunit	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.3189e-88
NC_008709.1\|WP_011770043.1\|2066096_2066780_+\|lactate-utilization-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	1.11968e-27
NC_008709.1\|WP_011770038.1\|2053686_2059602_+\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	3.21842e-120
NC_008709.1\|WP_011770036.1\|2043052_2051038_+\|type-I-polyketide-synthase	gnl\|CDD\|274311	TIGR02813, omega-3_polyunsaturated_fatty_acid_synthase_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.	0
NC_008709.1\|WP_011770039.1\|2059701_2061297_+\|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	gnl\|CDD\|240093	cd04742, NPD_FabD, 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	0
NC_008709.1\|WP_011770040.1\|2062757_2063660_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.31872e-87
NC_008709.1\|WP_011770035.1\|2042142_2042970_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	0.0023921
NC_008709.1\|WP_011770042.1\|2064653_2066093_+\|lactate-utilization-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	8.46697e-174
NC_008709.1\|WP_041766266.1\|2061449_2061695_-\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	0.00338317
NC_008709.1\|WP_011770032.1\|2038416_2039181_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	2.29725e-124
NC_008709.1\|WP_011770034.1\|2040926_2041874_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	6.8553e-47
NC_008709.1\|WP_011770030.1\|2036938_2037541_-\|ABC-transporter-auxiliary-component-like-protein	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	6.07784e-13
NC_008709.1\|WP_011770044.1\|2069521_2070232_-\|lipoate--protein-ligase-A	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	4.88708e-13
NC_008709.1\|WP_011770029.1\|2035780_2036554_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.89904e-111

>NC_008709.1|WP_011770036.1|2043052_2051038_+|type-I-polyketide-synthase
MSTEQSPNNHDMAEEEQLSSRMQECPIAIVGMSSVFAESKNLDQFWDNIVESVNGIRDIPEDRWAIDDYYSADKKAADKTYCKRGGFLPEIDFDPMEFGLPPNLLELTDITQLMSLVVARDVLADAGISDENSYDRDKIGITLGVGGGQKHISPLTSRLQGPVLDKVLKASGVDAADRNMIIEKFKKAYIPWEENSFPGMLGNVIAGRIANRFDFGGTNCVVDAACASSLAAIKMAVSDLLEYRSEMMITGGVCCDNSPFMYMSFSKTPAFTDGQNIRPFDDQSNGMMIGEGVGMIALKRLADAERDGDKIYSVIKGIGSSSDGRYKSIYAPSPAGQVKALKRAYADAGFDPLTCGLIEAHGTGTKAGDAAEFAGLSALFSENNAQKQHIALGSVKSQIGHTKAAAGTAGIIKASLALYHKVLPATINVEQPNKNLDIDNSPLYINSETRPWMPRADAIKRRAGISSFGFGGTNFHIVLEEYQSKQSGQYRLNEVPQTIVISAADKEALQQSLTTWRTKLAVTNDLQAYAFNALVVENPLSTPQQKLARCGFVAKNAQQALQLIEQIIKEFSLNDAPAWSTPTGIYYRESGLKTQGKVVALFSGQGSQYVNMGRDLSCNFPSILDTHALMDTQFSDNGLPQLSKVTYPIPAFTAEKRAAQEESLRLTQHAQPAIGAFSAGLYKTFLQAGFKADFTAGHSFGELTALWAAGVLSEHDYMLLARSRGQAMAAPEDENFDAGTMIAVIGDPAQVALEIKPLAGLSIANYNANNQVVVAGPTSEVGVAFEQLKEKGYKVIQLPVSAAFHTALVGHAQKPFADVIDRVEFKSPSIPVFSNGSAVAHSTQPEVIKASLKKHILEPVHFNDEIDNLYAAGGRLFIEFGPKNGLTGLVDNILKDKSDVTTIAVNANPKKSADLQLRLAAVEMAVLGVQLNNIDPYNGLQRPTIPAKKSPLAMKLSGAAYVSEKTKKVFTDALNDGQKINTQPANTEQSRGIEKQLPVEKEVIVEKEVIVEKIVEKIVYLNPDGTAFDHQAVNMASVNMPPDNSTALVASIEQSVGQVVQHQAQLLSVHEEYLQGPKEYAKTFQAVLASHAGAAQLPESLDKTLTMYHDFQSETLRVHEAYLNHQTENMQQMLTAAPMTESADLSAAVQQNVAVNSVAAIKAVKPATSAPVQQNKTKVATPAVSTPVPTAAIDLNEIQNVMLAVVADKTGYPVEMLELGMDMEADLGIDSIKRVEILGAVQDQISDLPELNPEALTELRTLGEIVDYMQAQAPVAGRENNNVPLDNIASLDNNVPEIDLSAIRTVMLDVVADKTGYPVEMLELGMDMESDLGIDSIKRVEILGAVQDEISDLPELNPEALTELRTLGEIVDYMQAQAPAASIVATENESEQAKTQNSQSALLPIDLTHIMLAVVADKTGYPVEMLELGMDMESDLGIDSIKRVEILGAVQDQVSDLPELNPEALAELRTLGEIVDYMQSQAASIVATENESEQVKTQNSQSAPLPIDLTHIMLAVVADKTGYPVEMLELGMDMEADLGIDSIKRVEILGAVQDEISDLPELNPEALAELRTLGEIVDYMQSQAPAASIVATENETEQETQLKIQDSQPAASVTALLDIKNIMLDVVADKTGYPVEMLELGMDMEADLGIDSIKRVEILGAVQDKVSDLPELNPEALAELRTLGEIVTYMQSQAAPLNNAVPIVPVLGSAPVDLTLIETVMLDVVADKTGYPVEMLELGMDMEADLGIDSIKRVEILGAVQDEISSLPELNPEALAELRTLGNIVDYMVNLTGTSQADVIKSAEPVDSVEPVASFEPAPSATVVIKHLNVIEKIAMDVNGENLLLVDDGQGCAVRLADKLSKLGWSVTVIKPSWVNSDSDKTFSKKVNVFELNALNEQEINTILDTQSVWTSVVYLHPKTTITAIEYPQASKQGLMLAFLLAKLSDLAAPQNNIKTRASFVVLTRQGGAFGVEDNELESDLVQTGLTGLVKTISHEWPGVFCRAVDLASQLSADKVANIIVDELNDKNVKPVEVGFNHNGRLTLVAEKTDSYTLQSGSSIDQDSVFLVSGGGRGVTAECVIRLAKEYKSKFILLGRSDYKSDQPRWAIGINDQAALKKAAMQALQAKGKKPTPASISALVGSILSNREIKQTLALIDDAGGIGEYICADVTDSNAVLNALTPITSLWGEVSGIIHGAGVLADNFIEQKTVVEFEAVYNTKIEGLLSLLACCQQDKLKQLVLFSSAAGFYGNPGQSDYAIANDILNKTAYRFKALHPAAQVLSFNWGPWDGGMVTPELKKMFKDLGVYIIPLAAGAELLLNELAADSNRCPQILVGNDMGGQLPEDDVLDEKVLEDHVLKDDILEGKVLEDTSVKKPLVSRLAKRFLAANNPFLADHKIGENQVLPTVCAIAWMVEAAAVSYPDFVYQGLKNYQLFKGIVFDGKQASDYFIDLNTVEKKPGGLAIEVKISGEKSDGSLNFHYAATLLMSKENQAAPLYSSELPDLVLSKQENADALYQDGTLFHGSSLQGIQSLLECDAKGLLLSCLIPESVKSKQGEFDLQENNIFANDLVYQALLIWARKQLGLGSLPGSTLSWIVYGEVKVNQAFYLKLSVREQQANKVVADIILIDRDKQILAEISGAEVTCSASLNKLFKLAVEVDG
>NC_008709.1|WP_011770035.1|2042142_2042970_+|helix-turn-helix-domain-containing-protein
MSKQHKNATTTEEMRIFIFESDLPTAKLSRLLNISESTVRKWRKRQNCADLPHTPKQLNTTLTVAQEYVVVQLRIRLLLSLDQLLSVCKEFINENTSRAGLQRCLKRHGVSRLADMEPTPNELVHVVVDIEENQSNMVFSSKISPQAMTDVLNQLREKELTIDNLNSPLTDHALNAQSTSLNCLDVVQVNVTTLPEFVNQTENYRLLVANDPSGSWVYVDLYCDQEINAARRYMKHVLTKGPFHIRRVLAANYNEFLSHFRLLDDNAKNKQVTAP
>NC_008709.1|WP_011770034.1|2040926_2041874_-|putative-sulfate-exporter-family-transporter
MEKLLNNAKWKKQNLIFMGAAILCLSPVVSSPIALLLGFTLAMLGLVPKRINMNLLTKNLLAYSIIGLGFGINLDQAIAASKDAFGLIVLSLLSTLIIGWLLTKRLRINPKTGYLIASGTAVCGGSAIAAVAPAINASKDQTSIALATVFLLNSVALFLFPFIGHLLSMTQHAFGVWCAIAIHDTSSVVGAASAYGDEALLIATTLKLARALWIIPIAFISALLFKGDNKKITVPTFILFYCLSILVAYYLPQFSSLYEIIFSVSKRFLVLSLFLIGSAISFNKIKSAGAKPLVLGVLLWIITATGSLAYIQLLM
>NC_008709.1|WP_157035335.1|2040735_2040888_+|hypothetical-protein
MLSKNLLIMAILSCIAFSIISSGLLSTLFDLGAFVLLGYILFTQNKRAKK
>NC_008709.1|WP_011770033.1|2039177_2040329_-|MlaE-family-lipid-ABC-transporter-permease-subunit
MTYLKLQQAQIEKTQNNSGSILFRCQGDWTAKALQNVLRYLEKEAGILFNMSVQWDVSGVGKVDSAGIMLYIHYHDLLKLQHCTVELTGARSEYQNLYQLLRSHVSQQAVSKPGLLSRLLLPFTNIGKSTENLWRDINDFLTFIGEHSAALLTSLRHPSSIRYASIVKNIEEAGVRALPIVALTSCLIGVVITYQSALQLQKFGANIFIVDMIGISVTRELAPLITAIVVAGRTGSSYTAQLGAMTITEEISAMRTMGFEPHRFLVLPRIIALMIVMPLLILFADVIGIAGGMIVSNIHLNISYAEFIHRLQHVLDIKHLWIGLFKGPFFAWLIAITGCFRGFQVASNTESLGRYTTISVVNAIFLVIACDALFSVIFTELGL
>NC_008709.1|WP_011770032.1|2038416_2039181_-|ATP-binding-cassette-domain-containing-protein
MSSIISIDNIVTRFADKVVHDGLSLSVRHGEIYGLLGGSGSGKSTLMKEMIMLLQPASGKIQVLGYDVINIGQAEAAELRSQWGVLFQQGALYSSLTVMENVAISLKEYTALPAKLIREIVHMKLNLVGLPYHAADLYPAQLSGGMVKRASLARALAMDPRLLFLDEPTSGLDPIGAEEFDHLIIELRNMLDLTIVMVTHDLDSIWTIVDRFAVLANKKVIAEGTLKEVIQLPDPVIRQFFRGERGRLRNGHGK
>NC_008709.1|WP_083761743.1|2037530_2038433_-|MCE-family-protein
MVMESKINYTIVGLFVVILMTALLSITFWLTRQHGQQSYDTYFVHLLESVAGLNTDATVKYRGVDVGSVVRIGLKVDNPEVVELLIKINQNTAIKTDTTAALNFYGITGLAYIELEGIDKEAALLKSVNGEIPVIPSRPSTLRRIDQSLSKLAEKSIETLENINRLLNDKNINNVELLLFESKELLKDLRVQLKGIRTLVDNGVVMENKIAATSEKISAASISVQRMADNLEKNTTGLSQEMSRGMHANFSALNLLLSDLDILTGTLQTTLQDIKDSPADLLFKRTQANPGPGEDGYYEK
>NC_008709.1|WP_011770030.1|2036938_2037541_-|ABC-transporter-auxiliary-component-like-protein
MKNRDFFLLALLLIGITGCAGKKLPPVSTYTLYPALDTFYLPKSQEGKPAGILMLGRMGSSHVFNAREIIYSDQRYGQSSYAYSRWSDSPTIMLRLIFQEALEKSGRYIAVVPYSSQSKSDFLLESTLLDFSHRVNDDGTSDGLIKIHFNLIDNNTSRVIKSRNFVSSLPVAPPINAGNAVAALNKAATIVTKELVDWLR
>NC_008709.1|WP_011770029.1|2035780_2036554_+|ferredoxin--NADP-reductase
MLEVPHGFVKGTVTDRIDWTENEFSLMINAPVDPYFSGQFTKLALPDADGEWVRRAYSLVNYPHHKAGYEQMEFLFITADEGELSPRLQQLTAGDPVYVSKKSSGFMTLAEIPDNMTNLWLLSTGSAIGPFLSILDELETASRFEEIVLVHAVRTEAELVYQSKIAQMVERYQGKLRYIPIVSREESKGLLQGRIPDLLLSGVLAETAQVALNKESSFFYICGNPNMVKDTSAALNTLGYIKNLKRKAGNFSSENYW
>NC_008709.1|WP_041766263.1|2034757_2034979_+|hypothetical-protein
MQKNMSNKQVNNELQEQALSEENKWELAVNKSKEKYKSAARRKDKMGGEKREYFKDTKAYGEVRGSDFDDYYS
>NC_008709.1|WP_011770038.1|2053686_2059602_+|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MEDIAVVGIANLFPGSDTPETFWQQLLKKQDNRSQITKRELGVEPQKYYGRKGDMDKFYCMYGGYIRDFEFDSGPFISKGLNETYLNQLDSLHQWGLYVTYQALIDAGYWGSEKLQDCGLILGNLSFPTKTSNHLFLPLYGHVVEVALKQLTSSSFQLSNFSAGQTVNPDNALIAGFPSALLSQAAGLGGSVLSLDAACASSCYSVKLACDYLHTGKADMMLAGAVSGADPLFVNMGFSIFQAFPEDNNHAPLDKNSQGLFAAEGAGMMVLKRHADALRDGDKIHAIIKGGALSNDGKGEFVLSPNSKGQILAYQRAYQNAKVNPADVDYIECHATGTPKGDKVELSSMETFFSQYHNKPLLGSAKSNLGHLLTAAGMPGMTKAIWALNEGKIPATISLKNPMSSKNGYFGAAQMPVDMVNWPDTKDKTRSAGVSVFGFGGSNAHLVFQPGNTAYAPSSAAVKPREPLAIVGMDCHFGSATCLAEFDTLLTTGQTTFRELPPKRWKGMEQHPSIKQTLLLNKAPKGGYIENFDIDFLRFKVPPNKQDCLIPQQLLMMKVADNAAKDAQLTPGSNVAVLVAMGVELDLHQYRGRVNLSTQIEQSLKEQGIELSVDQRLTLTGIAKEGIASAAQLNQYTSFIGNIMASRIAALWDFSGPAFTVSSEENSVYRCLELAENLFQTSEVEAVLIASVDLAGSLENISLRQRYGPVSENATNRPNLLSSQQWLVGEGAGAFVVKPNSKANSNSVYATVDGLSFAAGSDAQAIEKAALKVCQIANLSCAQINHVEAFASGFSLDNQAEKSAFNKLYPSIKIDSVKRQVGHLFNASGMASIIKTALLLDKQKAGVNTAINGLGKDFCCAHLILSATDSARQSAPKNSLGRVKTPSLVKTITLGGDDIQQAILKQGDNPVFSDIKKQLAGKSLPPVSDPVRLEALQINRTRTAQSSSLDSALENLAVADKPATIQTATSISRAGVNVASKTSKDIFQQTKTHLAFIRSRHAAEQQIGQLIKLQVQLTSANPVFTEPDQTAEKTPSASFDSMKETAAPRIKAVESPSTSSAGLQIKGAAGYAYPPLLLIERYNQPQKIIYDSAALVEFAEGNIANVFGSDYAVIDSYARRVRLPMTDYLLVTRVTDLKAGINEYKKSYMATEYDIPTDAPFLIDGQIPWSVSVESGQCDLMLISYIGIDFQNKGERVYRLLDCELTFLEEMAFGGETLRYEIYIDSYAKNGEQLLFFFHYDCFVGDKKVLIMCNGCAGFFTDEELADGKGVIHNDQDKAQFTKAEKSYFQPLIVNQRSRYGYEEMLKLVDGDISGCFGPEYDQHGRNPSLKFSSKKFLMIERITKIDPQGGHWGLGLLEGQKDLEPDHWYFPCHFKGDQVMAGSLMSEGCGQMAMFLMLWLGMNSNVNNARFQPMPGEAQTVRCRGQVLPQSNTLTYRMEVTAMGMFPRPFIKANIDIILDGKVVVDFKNLSVEIKEQDNNSPCPVTLPKNVIQIPGAPLSPSAIRATRDSVSISVDLALSRLEKHLAEIDAAAVQKISSELADERGINPFKHPERPLMRVESDFTAYREKGVIPIKHFAAPMVHGQNRVPDQIPFTPWHLFEFATGDISKCFGPDFDVYRGRIPPRTPCGDLQVVTQVVEVKGKRLDLKNPASCIAQYYVPADAWYFTKNSHPNWMPYALLMEIALQPNGFLSGYMGTTLKYPGKELFFRNLDGNGTLLKQIDLRGKTIVNKSVLLSTSTAGGAIIQSFTFELLVDDQVFYTGNAVFGYFSGESLTNQLGIDNGKITQAWFVDHKTAPERIERFDLTDKKSPLFSAPAGKPYYRLAGGDMNFVDSVSIVEGGGKADLAYIYGERTIDESDWFFRYHFHQDPVMPGSLGVEAIIELLQAYALKNDLGAGFNNPRFITPSTQVIWKYRGQITPLNKQMSLDVHLTKVIRNEHEVRLVGDANLSKDGLRIYEVKNIVLSIVEA
>NC_008709.1|WP_011770039.1|2059701_2061297_+|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein
MSALGFNTDNQINWVWKVSPATINSDPQAIKDCLMDLHKPVYLVQQAESLGVSQQIDADGSEAVLAFAQALNPEDLGDPAFKKSYGLKYAYHGGAMANGISSVELVKALGKAGFLCSFGAAGLVPDALEKAIKAIQTALPNGPFAVNLIHAPSEEALERGAVERFLKLGVKVVEASAYLALTEHIVYYRLAGLSENADGSVNIGNKVIAKVSRTEVGRRFMEPAPKKLVDKLLVQGKITPLQAALSERVPMADDITAEADSGGHTDNRPFVTLLPSIIALRDEIQEKYNFSPALRIGAGGGIGTPQATLAAFNMGAAYIVVGSVNQACIEAGASEHTRKLLADVEMADVTMAPAADMFEMGVKLQVVKRGSMFAMRANKLYDLYMAYPSIEAIPTLEREKIEKQIFRKNLDAVWADTIAFFHERDPAMLERAQTNPKRKMALIFRWYLGLSSRWSNEGEAGREMDYQIWAGPSLGAFNSWVKGSYLEDYTQRKAVDVALHLLKGSAYLQRINQLKLQGVTLAQSLSGYYPS
>NC_008709.1|WP_041766266.1|2061449_2061695_-|hypothetical-protein
MPASRLYIPKANGKQRQLPRTAKLRFGFSSSTRRQGGIPTNKVKPKARSESLLITNTASTLSRSFLGFLAVVAVKAVGRKG
>NC_008709.1|WP_011770040.1|2062757_2063660_-|LysR-family-transcriptional-regulator
MVDVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAGETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDISVNIRLENEFADLVTEGLDLAIRTGNLENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKKIDALLTHNCLAYTGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIAYVPRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHIKQGYQNKAEYF
>NC_008709.1|WP_011770041.1|2063839_2064664_+|(Fe-S)-binding-protein
MSQKISNAGRTPSNTIECLNISEKKVGLFVTCLVNTMRPSIGFASITLLEQAGCTVEVPELQSCCGQPAFNSGDDEGTRQIAYQTIKQFENFDYVVLPSGSCAAMIKKNFIEVFKDQPEWLARAKHLADITHELLSFLVDVCQFEPNGIELDGSYTYHDSCSGYRALHVYEQPRKMLSTVKGLEHKPLNNHSECCGFGGTFCVKYSDISNEIVGEKVENVLATEADYLLGGDMGCLMNIAGKLNREGHKEITALHTAEVLAGLAPQILGGKDAS
>NC_008709.1|WP_011770042.1|2064653_2066093_+|lactate-utilization-protein
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDHTIKYMDHYLAEFEKNALAQGTIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIGLTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRSREDVVKLFREFHADPTYSEEITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAGIEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTKMLAEGMEAMLRCIRCGACMNHCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTHACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNRFVVQSFAIMAKRPKLFQLLSSSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA
>NC_008709.1|WP_011770043.1|2066096_2066780_+|lactate-utilization-protein
MNKHISELSRAKIFSAIKAAKPNVTMDVNTIRQEALEILKESEFARPKLLSEDATQALVLRIEAGLVIGTTCETLSILDELPHSVKQFFDKHSLPQEIKIQNIDKLAKLNWQGIATDSDILEDNTVGLCWAEYGVAETGSFVVHSSPKMPILLNFLPLYLIAVIPKSKILHYMDDYALIANEIAKKGETPRNMCLISGVSGTTDIEGVLVQGAHGPEILHIIIVEDQ
>NC_008709.1|WP_011770044.1|2069521_2070232_-|lipoate--protein-ligase-A
MSRNKLLRYQQTSVAKVFEKETALIDQIQTGELKQCLMLWQAKEATLILPAGKKWPESDALKAGLLADEWLLHSRKTGGAPVPQCPGIINLSHLYLWSKDTPYSIPQAYENLCTVLHGFFYQFNLVSKAHATKFSYCDGDYNININGKKIVGTAQRVILKKGGGKIVLAQAFILIDVLLDEIIKPVNLCYQLSDKTERVQAQVHTALFEHITERPTIDQLYQQLTQAFVDSALYSE
>NC_008709.1|WP_049752960.1|2070436_2070658_+|hypothetical-protein
MTQSRATQVSLVDTPYYHCISRCVRRAFFCGKDKFSGQSFEHRRQWMVERLQFLTSIFTIDTCAYAIMSNPRS
>NC_008709.1|WP_049752961.1|2070676_2070976_+|hypothetical-protein
MHVNELENSGLTNEEVCLRWNYLYSMPTLVSRWQAGAELSEGELLMVKTVVSRWRERLMDISWLMRSINEFIARKANKEDNYASRLYSLPSMALTLRAS

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Crispr_ID: NC_008709_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_11

2191446-2191576

Orphan

Consensus_repeat	Method
TCTTACCGTGAAGATGCCGATAATAAATCGTGGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_11

>merge|NC_008709|11|2191446-2191576|CRISPRCasFinder
TCTTACCGTGAAGATGCCGATAATAAATCGTGGAAAAGATTTATTGAGTTTCTTGATGACACGCTTAAATAATTTTACGGTTTTTGACTCTGAGTCTTACCGTGAAGATGCCGATAATAAATCGTAGAAAA

>NC_008709|11|11|2191446-2191576|CRISPRCasFinder
TCTTACCGTGAAGATGCCGATAATAAATCGTGGAAAA	GATTTATTGAGTTTCTTGATGACACGCTTAAATAATTTTACGGTTTTTGACTCTGAG
TCTTACCGTGAAGATGCCGATAATAAATCGTAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770146.1\|2194959_2195934_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_008709.1\|WP_011770151.1\|2200714_2201515_+\|potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NC_008709.1\|WP_011770133.1\|2179386_2180646_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|379337
NC_008709.1\|WP_157035442.1\|2182978_2183335_-\|DUF1499-domain-containing-protein	unknown	unknown	gnl\|CDD\|377828
NC_008709.1\|WP_011770135.1\|2181465_2182653_+\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NC_008709.1\|WP_011770134.1\|2180712_2180931_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770144.1\|2192472_2193774_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NC_008709.1\|WP_157035443.1\|2191723_2192146_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_008709.1\|WP_011770150.1\|2199595_2200258_-\|DUF2913-family-protein	unknown	unknown	gnl\|CDD\|371392
NC_008709.1\|WP_011770141.1\|2189728_2190619_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_008709.1\|WP_011770137.1\|2184208_2185000_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NC_008709.1\|WP_041767113.1\|2198236_2198932_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225258
NC_008709.1\|WP_011770139.1\|2186176_2188318_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_008709.1\|WP_041766314.1\|2199031_2199574_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240042
NC_008709.1\|WP_157035342.1\|2183698_2183866_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770145.1\|2194061_2194637_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NC_008709.1\|WP_011770138.1\|2185083_2185698_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NC_008709.1\|WP_011770147.1\|2196029_2198216_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NC_008709.1\|WP_011770140.1\|2188378_2189107_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_008709.1\|WP_041766316.1\|2201778_2202750_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770151.1\|2200714_2201515_+\|potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	1.33468e-10
NC_008709.1\|WP_011770133.1\|2179386_2180646_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|379337	pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.	6.6681e-21
NC_008709.1\|WP_157035442.1\|2182978_2183335_-\|DUF1499-domain-containing-protein	gnl\|CDD\|377828	pfam07386, DUF1499, Protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.	6.4133e-43
NC_008709.1\|WP_011770135.1\|2181465_2182653_+\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NC_008709.1\|WP_011770144.1\|2192472_2193774_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	1.68913e-159
NC_008709.1\|WP_157035443.1\|2191723_2192146_-\|Hsp20-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	1.30718e-32
NC_008709.1\|WP_011770150.1\|2199595_2200258_-\|DUF2913-family-protein	gnl\|CDD\|371392	pfam11140, DUF2913, Protein of unknown function (DUF2913). This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.	7.42889e-101
NC_008709.1\|WP_011770141.1\|2189728_2190619_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.40612e-18
NC_008709.1\|WP_011770137.1\|2184208_2185000_+\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	8.2188e-86
NC_008709.1\|WP_041767113.1\|2198236_2198932_+\|SAM-dependent-methyltransferase	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	2.93264e-36
NC_008709.1\|WP_011770139.1\|2186176_2188318_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.4103e-89
NC_008709.1\|WP_041766314.1\|2199031_2199574_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240042	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.06122e-66
NC_008709.1\|WP_011770146.1\|2194959_2195934_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.85655e-61
NC_008709.1\|WP_011770145.1\|2194061_2194637_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	2.77804e-32
NC_008709.1\|WP_011770138.1\|2185083_2185698_-\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	1.46518e-38
NC_008709.1\|WP_011770147.1\|2196029_2198216_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NC_008709.1\|WP_011770140.1\|2188378_2189107_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.59404e-13
NC_008709.1\|WP_041766316.1\|2201778_2202750_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.4858e-97

>NC_008709.1|WP_011770141.1|2189728_2190619_+|DMT-family-transporter
MPASLCLIIATFLWGSSFVALKYAIEFYDPTFVIFLRMLITLITCTFFWRWIKRFSYRKGDWKFLISMSLAEPCLYFLFEGIALQNTSASQAGVLVSCLPILIAILAFYILREQLSKAILAGFTLCISGSILLTIMSPSSAHASNPLLGNFVEFLAMICAAYYSVSIKYLSGRYSPFALIALQGLSGTLFFAPFLLFNDLPVTHNSNALLNILYLGTVVTFGAYGLYNYALTRVSVLTAASFSNLIPIFSLMLSAIILGERLNSAQWLSIAIVFLGIIISQKHKSVTPASAEIQSI
>NC_008709.1|WP_011770140.1|2188378_2189107_+|sulfite-exporter-TauE/SafE-family-protein
MDINLLIAMLLIFCGSFIQSATGFGLAVVAAPILIHLSPEFIPGPIIIVGLFLGIINSLRYRANISFAGLKHGIMGRIPGTIAGAVLLFYINVAELSLLLGIIVLMAVVISLLPIKLEPTPRRLMIAGFLSGLFGTSSSIGGPPMALLLQHQQAHLIRANMAAFFVAGGIMSLFVQIPIGFMTLHHLYISLPLLPAGYLGYRAAHHFIDRFSQQIVRRMSLVLCTISGSGALFSGVISIWGT
>NC_008709.1|WP_011770139.1|2186176_2188318_+|MFS-transporter
MLKTLKPFPLLLLSGFLIMLGNGLSNILLPVRMQHDGVDISNIGIVLSMYSVGFLFGAIYCRQLLQRVGHIQTFAICGSLTAVAILLSGLYSDPLVLGAMRIITGFCIACTNATLDSWLGHSATEKNRGRILAVNQIIIMSALFSGQFLLNLAPVESTTLFILAGILFSFSITPIVIGRHKGPFIEDSQGMSFFTIIKLSPLGVVSCFFCGVLYSGLLNMLPIFASNNGIEGFDLSVFMGAAIAGAIILQFPIAYLSDHFDRRKVMFGMVATFIVFSILIPFLIYLEWFKLTLMALAITTGLAACLYPMSISEAFDKVIKEQILAAMGSLLAIYALGSILGPYSAAIAMESLGNNALFGFTVVAAFLLLIFISIRMKKSEALAIDDQESFVMQTPSGAVSVLDPRTVYTQSELSTNAGVQIAVNLAYENPAIALNMVKALARRDIKNASRLVAGLSQIKAVNIGKLYSAIVRIAPYRSIRTAQILIDAAPERAEQLVDWIIMQDDDDMCKIIVAIAAMMPDNGINILQYAAQKMVGKYPLAILAMTEEYINILSSSLDEMRPVDRVATDPQQTATELYNRMQDVSPEQSADIAITISEALPDASFDVAEAYLHNLLLSEEHPFKNKESIQKIQTAINLYMKEVAKNIPEHAVEVANTFIEIVPDVASSVVEIIQDAEQYSDSYLTQTITDKPVESQINEALQKAVELQNVDDT
>NC_008709.1|WP_011770138.1|2185083_2185698_-|DUF2057-domain-containing-protein
MRFLVVLITFCVMSSSYAATLTAERNVEILAVDGQKYSNQILDTSDFTLPKGQHQIVVRYSNSFPKDGMLTSKPYIFNIQADNNTTIAAVEIFNSYEQAKKALETGITWRVTNQNNSVMIKDADILSGEGFLPYHDIEKLIAKYNKDEGIISSSTADNLAITAQGESSDYSNSAPIEQLIKVYNSASKADKKAFRIWLIEQDMK
>NC_008709.1|WP_011770137.1|2184208_2185000_+|M48-family-metallopeptidase
MKIIKPFLLSTVVAASLTLYGCANSPTGRTQILLFSGTEMSQLGAQSFEEIKKQEKISTDKKTNVYVQCVTSAITARLAPQSDFTQWEVVVFDSEQINAFALPGGKIGVYSGLLKVAVNQDQLATVIGHEIGHVMANHSNERLSRSQLANTGLQLSNLALGGAEYQNIAMAGLGLGVQYGILMPYGRAQESESDTLGLKLMAEAGFDPQQSVNLWVNMAKASGGNQPPELLSTHPSNSTRIKNLKAQVAALPASNVKGQNCKL
>NC_008709.1|WP_157035342.1|2183698_2183866_+|hypothetical-protein
MQGRGATFVAIPQIPPRNVTWFKKGKWVHFAKIAFEKYFMMKIKNTCLNYCVLPS
>NC_008709.1|WP_157035442.1|2182978_2183335_-|DUF1499-domain-containing-protein
MEPCPTSPNCVSSDATDKNHFILPFQLTTSAEKAWPIVIEVIMALPRSNIIQQTDDFLDVECRSAVFGFVDDLKLQLRVSEGLIAVYSASRIGYSDFGVNRDRIEVLRAALIKRGVIK
>NC_008709.1|WP_011770135.1|2181465_2182653_+|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MDSSSTTKLSFLLIVILGGITSLTPFAIDMYLPAMPSIAKEFGVSAGAIQITLTSFIAGFAVGQLFHGPLSDSFGRKPVLLLGTFFFALAAVISAASDSIDALMWARAAQGFSGAAGAVVVQAIVRDMFAKEDFARTMSFIILVMTIAPLLAPLAGGYLAVWFGWRSIFWLLALIAFVMIIAASLVIPETLKAENRQPFRLRTTMRHFFTLFTRSKAFGLIFTGAFSFAGMFAFLTAGSFIYIEIYGVSITNVGYLFGLNILLMMVMTTLNGKYVKRLGSHYLLRLGLTIQLIASLLLVLAQLLDLGLWGVVVPVMLFFSTISMVGSNSIALLLNEYPEIAGTVSSLAGSLKFGAGALVAAAVSMLPSGSVWPMILMMVLCSLLSMTFYTYCAKR
>NC_008709.1|WP_011770134.1|2180712_2180931_+|hypothetical-protein
MTNKFNFNDAVKELPAGKNLNGKDGVLTSIIKQLTKAALQAEIEQHLINDQHPNRQNGSARNLWCQVFNFHF
>NC_008709.1|WP_011770133.1|2179386_2180646_+|glycosyltransferase-family-4-protein
MKKLLIIGYVWPEPNSSAAGSRMMQLINSFQMQHYQITFASPAQQTEHMADLNALNIAVENINLNCTSFNDFIVKLAPDAVMFDRFMMEEQFGWRVSEHCPQALRILDTEDLFCLRHARHQAYKEKRSIIDENLLTSDLAKREVAAIFRSDISLMISSIEVELLQRLFKVDAKLLHYCPFMLNEAQLTQVNPHYQQRQDFMVIGNFRHAPNWDAVLWLKQQIWPLIRKQLPNVVLNIYGAYPPPKATDLHDEKSGFLVKGWVDDAVLAMQSAKVCLAPLRFGAGMKGKLAEAMYCATPSVTTDVGAESMQTELPWAGAIANDPQAIANAAVKLYQDESIWQTVSDLGPKNAKVMYQQESINSALSQCISQLTDTLTSHRQANFIGSMLNHHHHKSTQYMSQWIDVKTQLKVIVEGADEQ
>NC_008709.1|WP_157035443.1|2191723_2192146_-|Hsp20-family-protein
MMNIVPRSQWLSPEHVFDDFFALNKLKGKEGYFEPRVDIIEKDDQYVFVAELPGVDKEDINVQLQDGLLTIEAKVHEEKESEVDNVIKKEIRSGFFSRSINVGKNIKEEEIKAELVNGLLKLTAPKAKPAGHEVHKIEIS
>NC_008709.1|WP_011770144.1|2192472_2193774_-|DEAD/DEAH-box-helicase
MSVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPILDILAKNANEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQKHQTLMFSATFSNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWVSETRKNELLSELIGVKNWKQVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSVRVLVATDVAARGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQFLDNIETLIGRKFERIVYPGYEIDSSLPGYYEQSSDKPLKKSRYKATQERNKMLEIQRAKNTPAAIRREKNKNKKQR
>NC_008709.1|WP_011770145.1|2194061_2194637_+|nucleoside-deaminase
MFLQPSEISFKLPGWIDLFSQRYVSSTDLNIRMAFVISAAKKNVEQGSGGPFAAAVFEIETGKLVSLGVNLVTTQGLSILHAEIVALVAAQRKLRTYDLAITRHELVTSAEPCAMCLGAISWSGVCHVATAATDQDVSAIGFDEGPKPNNWIKSLKARGIKVSTNIQREFSCSVLQLYIINNGCIYNSGKS
>NC_008709.1|WP_011770146.1|2194959_2195934_-|Gfo/Idh/MocA-family-oxidoreductase
MINFAVIGSNWITEKFINGTLVNNDLNLTAVYSRTLKTAQNFAGKFNVQQCFDDLQALSQCDDIDAVYIASPNALHFEHALLMLEKGKHVICEKPLASNIQEVDALYQAATANNVILFEAYKTAYLPNFAQIKNNLSKIGKLRKAHINYCQYSSRYQKYLNGENPNTFNPYFSNGSIMDIGYYCVAFTIALFGKPQHIQADAVLLNSGVDGCGAVLLNYGDFSVTIDHSKISRSDLLSEIQGEQGNLLIKQVSECTEVTLITDIVTDLTQDQHENSMSYEASFFAQQIKQGKMDLQSVERSKITSAVITEIRRLTGVKFPADNQ
>NC_008709.1|WP_011770147.1|2196029_2198216_+|RNA-binding-transcriptional-accessory-protein
MKTTTPPVSQQLANEVNLPLMQVNAFITLYDDGNTVPFIARYRKEVTQGLDDIQLRLLETRLIYLRELDIRRQSILKAIVALGKLTPDLNLKIKQCNNKSTLEDLYLPYKSKRVSKGELAIEAGLEPLADKLWMQADGDANILGKQYINPKKGVSDIESVLEGALSICMERIVNDPQLLGKLRHYLSANAAFECKVAKGKEEQAVKYKDYFDYQEPLHKIPAHRFLAILRGKKEGLLKLDLNADPKQDKKTKSSYCESLIAHHLGFSWLQLPANNWRKKVIQKAWKGKLAGQLETQLITRLKDDAHENAMDNFASNLKALLMAAPAGPKVTLGLDPGLRTGCKLAVVDSTGKLLAYQTIYPHQPVNKTQQAAQEMLKLIKEFKVELIAIGNGTASRESDDFIRDTLAQQNLEVSTVIVSEAGASVYSASELASLEFPDIDVSIRGAVSIARRLQDPLAELVKIDAKAIGVGLYQHDVNQSSLSQRLGSVVEDCVNSVGVDLNSASVSLLARVAGLNQTIAKNIVSYRDLNGAFKSRQALQKVSRLGDKAYQQSAGFLRINNALNPLDNSAVHPEAYNLVKRIAAQEGVKVQQLLNNSDLLNSLDAQNYADQTFGVISVREIVKELAKPKRDPRPDFQRVDFAKNINKISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQRKRIALSMRLAVKA
>NC_008709.1|WP_041767113.1|2198236_2198932_+|SAM-dependent-methyltransferase
MKMSRRLQQIDAMISQSYQHIWDCCCDHGFLGLSLLKRQAADTVHFVDIVPALLRQLESDLKIHYGQVQNRSRWNVHCSDVINLPLTSVSENPESDKHLIIIAGVGGELSIELMTAILSQFSNYPLEFILCPVHHNYKVREFLISRQLGLIAESLIIENKRGYEILHVALNVTEPITRVGSKMWDFSQKEHIDYLQKSIKHYQRIAKNPQQDVQAIITQYQSLRTPIDSAY
>NC_008709.1|WP_041766314.1|2199031_2199574_+|NUDIX-domain-containing-protein
MRLLKTTIHPDIASLNKSTFLRNAARAIVLKGDMILMLYTARYHDYTLPGGGVDKEEGLVEGLVRELQEETGAQNIRGIQAFGLYEEFRPWHKDGFEIMHMKSYCYICDIDTKLGVTNYEDYEIRNGMKPVWLNIYDAIKHNQQTLLNSDKKGLSVERETFLLQLIAAELLAEKQQVNAN
>NC_008709.1|WP_011770150.1|2199595_2200258_-|DUF2913-family-protein
MIQFSTEIYKLITTALTELSDSHDSGRTPHNPLSEAHYLGAWITTAMKKKRFDAIVAPTLQVWQRQARSLGKNAGLKRQFTYLEKCYSEVMDEQKEVRPVNKSQLEKLFAGLEEDQWLVTTDLPVGERLNRHSGGKESLIVCAQQLLDCFDEQGTLIKPISLYIRGTLPKIIDLAFAQDLLLHKITDYKSKVKYHGEFIVYPNNDGRSLPEFPENNSEKS
>NC_008709.1|WP_011770151.1|2200714_2201515_+|potassium-channel-family-protein
MTDKPSQTGFGQQLRKQIDFLYNGASTRARNFRWGLLAFDGMTILYFVVGSFFPSLHSQYLLEQGIGIIYLLEFCARLSISKKRLRDIFHPVGLADLIVIASLLVPSLLGNLSFLRVLRSLRLLRSYRMLKNLRGQSTFVRLHEDIIFSIVNLLVFIFVITAIVYVSQVGVNPDIKSYVDALYFTISTLTTTGFGDITLIGTSGHLLAVLIMIFGISLFLRLIQTIFRPEKIPYECPTCGLNRHDIDAVHCKHCGQVLRITTEGSN
>NC_008709.1|WP_041766316.1|2201778_2202750_+|IS30-family-transposase
MKTYNQLTYEQRCQIYALKKTGLSQNKIAKQLSVSQSTISRELSRNTGKRGYRIQQAQISSDKRRLAACKAIKMTTSLIELIDSRIKEKWSPEQISGRLREQQSINISHETIYQHVWSDKKSGGNLFKKLRRKGKIYQTRNKDKQAGRGFIKNRISIDERPQVVDDKSRMGDWEIDLVIGKGHSGALVTIVERKTSFTVSTRVDDKSAKTVTAATIALLKPFEDSVITITADNGKEFAYHEEMTESLKCDVYFADPYCSWQRGLNENTNGLLRQYWPKSTDFKKVSQSEVQDVIVKLNDRPRKKINYKTPAKLMAEHRVAIAA

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Crispr_ID: NC_008709_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_12

2237287-2237378

Orphan

Consensus_repeat	Method
GATAAACGGGCAGCAGAGCTTGCCATTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_12

>merge|NC_008709|12|2237287-2237378|CRISPRCasFinder
GATAAACGGGCAGCAGAGCTTGCCATTGCTAACAAAGAGCTTGCCTTTCAAAATAAAGAGAAGGATAAACGGGCAGCAGAGCTTGCCTTTCA

>NC_008709|12|12|2237287-2237378|CRISPRCasFinder
GATAAACGGGCAGCAGAGCTTGCCATTGC	TAACAAAGAGCTTGCCTTTCAAAATAAAGAGAAG
GATAAACGGGCAGCAGAGCTTGCCTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770173.1\|2228521_2229076_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770180.1\|2239943_2240966_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NC_008709.1\|WP_157035344.1\|2249110_2249602_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225577
NC_008709.1\|WP_011770168.1\|2220024_2220492_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_008709.1\|WP_011770171.1\|2223849_2224842_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NC_008709.1\|WP_011770184.1\|2247045_2247669_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770169.1\|2220488_2222792_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_008709.1\|WP_011770188.1\|2250726_2251233_+\|DUF3087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378624
NC_008709.1\|WP_011770183.1\|2243242_2247046_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|378817
NC_008709.1\|WP_011770187.1\|2249748_2250579_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770172.1\|2225554_2227519_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|377162
NC_008709.1\|WP_011770174.1\|2229315_2230425_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|274465
NC_008709.1\|WP_011770175.1\|2230482_2230839_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770176.1\|2230975_2233267_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_008709.1\|WP_011770185.1\|2247668_2248910_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770177.1\|2233263_2235786_-\|chemotaxis-protein-B	unknown	unknown	gnl\|CDD\|319753
NC_008709.1\|WP_011770182.1\|2242426_2242978_+\|DUF1415-domain-containing-protein	unknown	unknown	gnl\|CDD\|377792
NC_008709.1\|WP_011770170.1\|2223075_2223807_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133025
NC_008709.1\|WP_011770181.1\|2241278_2242154_-\|serine-protease	unknown	unknown	gnl\|CDD\|132866
NC_008709.1\|WP_011770179.1\|2239238_2239613_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770183.1\|2243242_2247046_+\|ATP-binding-protein	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	0
NC_008709.1\|WP_011770180.1\|2239943_2240966_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	2.51575e-134
NC_008709.1\|WP_157035344.1\|2249110_2249602_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.05475e-33
NC_008709.1\|WP_011770168.1\|2220024_2220492_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.1989e-75
NC_008709.1\|WP_011770171.1\|2223849_2224842_-\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	1.92152e-34
NC_008709.1\|WP_011770169.1\|2220488_2222792_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	2.6716e-64
NC_008709.1\|WP_011770188.1\|2250726_2251233_+\|DUF3087-domain-containing-protein	gnl\|CDD\|378624	pfam11286, DUF3087, Protein of unknown function (DUF3087). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	9.18598e-78
NC_008709.1\|WP_011770172.1\|2225554_2227519_-\|GGDEF-domain-containing-protein	gnl\|CDD\|377162	pfam03924, CHASE, CHASE domain. This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases. Predicted to be a ligand binding domain.	3.00952e-65
NC_008709.1\|WP_011770174.1\|2229315_2230425_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|274465	TIGR03169, selenide_water_dikinase_putative, pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.	2.78157e-85
NC_008709.1\|WP_011770176.1\|2230975_2233267_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.20617e-54
NC_008709.1\|WP_011770182.1\|2242426_2242978_+\|DUF1415-domain-containing-protein	gnl\|CDD\|377792	pfam07209, DUF1415, Protein of unknown function (DUF1415). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.	9.66506e-93
NC_008709.1\|WP_011770170.1\|2223075_2223807_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.05825e-47
NC_008709.1\|WP_011770181.1\|2241278_2242154_-\|serine-protease	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	3.29959e-59
NC_008709.1\|WP_011770177.1\|2233263_2235786_-\|chemotaxis-protein-B	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	4.91737e-104

>NC_008709.1|WP_011770177.1|2233263_2235786_-|chemotaxis-protein-B
MINTPVIVGIGASAGGFEALEEFFSHVLTPCNIAFVVIQHLDPTHKGIMPELLQRDTTMKVKQACNNMKVKPNCVYVIPPDKDLSVLHGVLFLLEPVVKHTIRLPIDSFFQSLAADQHERAVGVILSGMGSDGTLGLRAIKENAGLSLVQSPESAKFDSMPQSAINAGLADITAPAEELPERIIAFLEHSRRGVPNKLEPIVKRKSTSALAQIIMILRERSGNDFSLYKTNTIDRRIKRRMGLHQLETISLYARYLRDNSQEQDLLFKELLIGVTNFFRDKDVWAQLKSTSLPALLANYPEGKELRAWVTACSSGEEAYSLAMTVMDVLDEIKPKGHFKLQIFATDLNQDAINIARKGYYPAGIEADMSAQQLDRYFIKDGSGYRINKNIRDMVIFAPQNIIMDPPFTRLDILTCRNLLIYLAPELQKKLLPLFHYTLTSHGLLILGNSETIGNATSLFSEIKENTRIYTRIDRPGQHTEVDFPTKIFPIMPLAENEHEGTRKMTKNISNLQTQADQILLQNYSPAAVLVNAAGDIIYINGRTGKYLEPAAGKANWNIHVMAREELQHQLELAIKKAQMQVEPVTIENITVDTHSVNLTVQAIIKPKDLLGLIMVVFTEVVTPTRRRRKKQGAAEQESQAELQLAHDEIKSLREQMQSTHEELKSANEELQSTNEELQSTNEELTTSKEEMQSMNEELQTVNTELQSNVDDLSWVNNDMENLLNSTEIATIFLDNGLHIRRFTNHATHVFKLIEGDKGRPLFDIVTDLDYKDLQKDAKKVLKTLAFVEKEIAANNERWFKVRIMPYRTQENVIDGVVITFTNISEAKLLESELRKTRSNP
>NC_008709.1|WP_011770176.1|2230975_2233267_-|diguanylate-cyclase
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARITEKLYYRYTELFEFAPIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYLTPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIEANLGITETDCLAAVIDITDRKRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQYEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRVEPKIQFLSKHDPLTGVFNRIALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHNAGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLNEQDVADVAQNITAQFERYFDIDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKSGKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEALLCWNHPQRGVLHSDSFISLAEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLTEVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDNPTVYENILNISKMGMALTVDKFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLANNTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK
>NC_008709.1|WP_011770175.1|2230482_2230839_+|hypothetical-protein
MKKVSFINIEDEGIDLILSFAVYDSEPSAIESLILMRTPRYELLLDDHERGVAVSFKNHEQSSLLKSVVLGTDIVEIFNQENKYILDMRHVDKDELNELEKILKKMNFDNRFTIVRPS
>NC_008709.1|WP_011770174.1|2229315_2230425_+|pyridine-nucleotide-disulfide-oxidoreductase
MKSLVLIGGGHAHMITLSKLDTFISKGYQVTVIQPADYHYYSGMGPGMLGGTYEPDDIRFATKILVESKGGRFVKAHASRIDPEKRVVHLQESDEKIKYDVLSCNAGSYVPKNIVEGDSDNVFTAKPIEELSRAKETILKKLRDGPISIAVLGGGPAAIEIAGNIHQLCKQKALHQPHIRLFSGHGLMSKVSPRVRKLLRKLLVRKGIEIIEKGYVEKVANGKITLENDTTYTADIIFPAIGVKPSTIFSRSGLDIGPEGGLKVNSFLQSTSHTPIFGGGDCIYYADQPLNKVGVYAVRQNLVLYHNLMAALEERPLEIFSPGGDYLLIYNLGDGEGVFSKWFLTFSGKMAFMIKDHIDRKFIKLFQVL
>NC_008709.1|WP_011770173.1|2228521_2229076_+|hypothetical-protein
MSSALKEQKETILQYLETTHYIESNAPKAEEKREAKYKIGKACNKAREILCSDDAFLDWVWSNVIAECSTDIEEVTPNTLISWRLLPKFGTLEQCEIVGFTHISKLLLDKNAAMKAEVLDIIANNDPETANKLIKMVLKPAIDFTPIVANKKNLSDTVNKADKLSKDALVALVKAMHQKMISNK
>NC_008709.1|WP_011770172.1|2225554_2227519_-|GGDEF-domain-containing-protein
MKRSVKTEFFKFIHSTLPSWLIFSLSLCITFIAWSITTKSNQLHIQELFKFEVAQTIRSIEQRMQEYEQVLRGGVGLFKSSDHVNRLEFHHYISNLHVEKYLTGIQGIGYAVMLKPEEKDTFVNMVRLEGFNDFSVFPEGSRDKYSSILYLEPFTARNQRAFGYDMYSEEARHTAMDIARDNGDIAYSAKVKLVQENGDDLQNGFLIYLPLYRNGAPIENISQRQKELIGYVYSPFRIDNLINGILLGDEIRRINFSIYDGHSENANNLLYAPDRIGAYLPSAYKKESKPAFYVVKTIEFPGRNWTIPFYSTSVFEKSVENNLAKLVGISGIFVSVLLLIVMLNITITGKKSMQAKAELEILIDRLKAAASAGIVGIWDWDVEKNILTWDSVMYKLYGLQKSDFEDLYEAWISRVHIDDRMHIDGEIQAALRHEREYCPEFRVLWPDSSVHYIKAVSKTTFDEIGKPIRMVGVNYDITEQKKIQMRLDKEASYDHLTHLPNRRLLNDRLKQAIAFSKRTQKNLAILFIDLDGFKSINDSHGHQVGDWLLTEVSKRIQYCLRATDTVGRLGGDEFVVVLPEIYENAKEVANKILNSLEEPFVITNNGVLHISSSIGVAIYPLDAKSQTMLMECADKAMYEAKKRGRNKVVFFDVA
>NC_008709.1|WP_011770171.1|2223849_2224842_-|XdhC-family-protein
MSHHIEDLLSQWNMYPNDKWVLAVITKIQGSSYRKTGAMMLFHALGKSIGLVSGGCLEGDLLRHAQRAIQQDQAINITYDATDESDASYQLGCGGIVDLLLIPVTADNNYLHLQTLMEQLKSENCEYHLPLVKSGTQAASISASVVPILNKTDYDFSKSTYNKAKESSDITILQIPCRTRFHLAIFGGGLDAQPLTMMAIQLGWKVTVFDERSSYAHQHHFPKANIIKQPLSQLENDILLNIDGVVVMQHNLTLDALALKLISQSHQAYIALLGPRHRRDQVFSKANINLDDFKGFFSAPAGFDIGGELPESIALSILAECHAVFYKRIH
>NC_008709.1|WP_011770170.1|2223075_2223807_-|nucleotidyltransferase-family-protein
MNANEKIAWGSVNTIIKELKHNVNDATQKTLTLVLLAAGKSSRFNGIKLAQPIVDLNADGVLVNQPLLLHSLDKLNYLADYLTANNIANNVVVVLGSHHSELSQLLPISTTYITNDKSDNGLSTSVKVGVEAAISTHASGLLLALGDHIGVTYTDYMKLADLWVIQQSNVCASYQAQLGVPAIFTSDQFSALTQLKGDQGAKPVLQQLVKNKQLTCLDLPNAINDIDTRNDLLQWQQLQLNNQ
>NC_008709.1|WP_011770169.1|2220488_2222792_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MSRLPKRGSQGITRRGFLIGMTAVGVSFGFPRHLMAAMDPASPNGKVLPSEGDIYEPSLWYSIDTAGKIKVNIMRSEMGQHVGTAIARILADELEASWDDIEIIHVDSDPRWGYMVTGGSWSISQSWPVYRQAGAAGRTAFIEAAAKKWGIKAQDCEAKNGKIISSKGELSYGELVTLGLTRQFTEEELKQLPLKPNADLTLVGQPVTSLDIANKTNGKTIYGIDAKVDGMVYANPILPPTRYGSKVVTFDDSAAKAIKGYQKTIVLEDASGSVPGWLMVIASSFHAAQKASKLVKVTWDVGETATVSEADIIEHGRKLLGDNTKGSILDTGNVDTAPVFASASSSIAQEYITSTVLHAQMEPVNALVFKNPDGVWEIHSGTQWQSLILPVLAIALGEDEANIVMRSYMLGGGFGRRLNGDYTVPAALTSKALGGKPVKMVMTRPQDMLFDSARSASVQQLKMAFDDKKAVSAMEHHATAGWPTQVLAPFFMPKGVNGEPYDPFSISGADHWYSVGAQKVRAVSNDLAIATFRPGWLRSVGPGWTNWAVESFMDEAAHHAGKDAVQFRLDMLIAEGRNAGSTPVAEGGAARQAAVLKKAAEMIGWGTPQAKDTGLGIASTFGQERDMPTWVSCAVQVHVDKTNGIVNVQKLVIAIDAGIIVDPNGAEAQCQGAALWGLSMALFEGTELLNGQYKDSNFDTYTPLRLSQAPEIKIEFIDSKMPPSGLGEPAVTPVAPAIANAIYQAVGVRLRKIPMKPSDLKSALAKA
>NC_008709.1|WP_011770168.1|2220024_2220492_+|(2Fe-2S)-binding-protein
MAKFILNGEPMTADVESDTPLLWVIRDELNMTGTKFGCGIGTCGACTVHVGGRATRSCITPISIVEGAEITTIEGLSEKGDHPLQISWINLQVPQCGYCQSGQIMQAAALLKDIPKPTDKDIDAVMAGNLCRCMTYVRIRSAIHEAANAIEGEQS
>NC_008709.1|WP_011770179.1|2239238_2239613_-|hypothetical-protein
MEIQVMFNHLLDANEGSVDMEIAVRKGEFFVHATPTDNGFSISLFEHEGLNLPCFFATESEALAEQDDISKLYHQQIAVGDRLETDVWDGVVLKAKRHREGDLIALYQGETLIGKKTWKSLSGL
>NC_008709.1|WP_011770180.1|2239943_2240966_-|ACR3-family-arsenite-efflux-transporter
MGIFERYLSLWVGICIVVGVFFGSLVPGAFLQIARLEWAHVNLVVALLIWVMIYPMMVQIDFSSIKDVGKKPKGLVLTLIINWFIKPFTMAVLAWLFFKVFFAGWVDPQDANQYIAGMILLGVAPCTAMVFVWSQLTKGDANYTLVQVSVNDIIMIFAFAPISAFLLGVTDITVPWETLLLSVLLYVLLPLLAGVSTRHYLHHKHSREGVTTFLAKTKPWSIVGLLGTVILLFGFQAQTILMQPQTILLIAIPLTIQSYGIFAIAYTAAKAIKLPYDIAAPAALIGTSNFFELAVAVAISLFGLHSGAALATVVGVLVEVPVMLSLVYFANSTQHWFKDA
>NC_008709.1|WP_011770181.1|2241278_2242154_-|serine-protease
MTKIKKKTVSLVLGSGGARGMAHIGVIRWLLTHGYEIKSISGSSVGALVGGMYAAGKLDEFEAWAASITTLYKLKLFYINWNHEARGDKIMNVLIELFGDYKIEDLPITYTAVASDIRNEKEIWINKGSLFQALRASMAMPLFFTPVVRNGVDLIDGGVLNPVPIAPTFSDHTDLTIAVNLGGPIHHQQHKLAEKPHNGLGIPVNLDAITKHFSPSKKMQQEKGIDWKIYNIAELAIDAMQSTIARQKLAAYPADHIIEISRDACGTLEFERSAEMVKLGYQMADRCLQNV
>NC_008709.1|WP_011770182.1|2242426_2242978_+|DUF1415-domain-containing-protein
MTDKNEIISATQDWVSQLVVKYNICPFARREVERGSIRYCQAEDAQCEAVLQTLLDECRLLDGNKELETTLLILPSGYEGFYGFLDLVDLANDLLVVEGYEGVYQLAHFHPDYCFADEVQNAPSNYTNRSPYPTLHLIRESSMEIAIANHPDVDSIPQRNIEFANKKGNAFFADLLAGCSIKK
>NC_008709.1|WP_011770183.1|2243242_2247046_+|ATP-binding-protein
MAQQAYQLLRIIIIDSFWKGQVNELNLTGHTQLEGTNGAGKTSLMRLLPLFYGMRPSDIVSKVDQAHNFADYYLPRDSSMLVYEYQRPFSQTCMVIASSDGRGVHFKFIDGAYNSEYFIAENNKPYPVSDVDKFYRNAGCDRSIFLGVDKYRQVIQNLRSGRKLKEVYLLQKRYSFSDQPCPHIDKVINGTIEKNLDFDAVKRMLVAIASDHLARNSVDEKEQISLKKEEISHWLADIQAGRAIQKVAHKITLWQNDFSSLESLLLKLQHLHFEIVSHQTRIESLQKERAETKADKRQLLISLEKQLQESVDRLNGELFTLKAKIQADQSHIDLLDEDKLIFDQDDAPSYHLHAEQAPQIQNELNEVNAIIEAFEGNINKIQQKFDRLIQNRKLENVTDIAGNKDKTANIKETAALQLTVISDVYQQQCNELNEQLNQQNLNLKIGQERIESALENAKFQLNQAIIEPELLTDIENNQVLLNAAQEKQTQRFKEQSSLQSELTQFDKLREKQSDKHQQENRYLEQLRSECAEVELQLIPKAGSLHHYLNNEPLAGDWKQSIGRLLSSAQLGRCDLDPEWVGGELNFYGLKLDLQQIQHNDSLFLNETQLREKRDALETTYQTQSDKIKQIDEQLAQLSKQIENQQLKMTRAAQGLKQNELNLQQLNVQHQNLAVKKQRAIKAHIDSVNEQINSLEKQKKVNDKKQQAFSEQQQGQKSELSTQMLEKRLVVESDRDVQLDLLSEALLALESGHKARIKALQKQNDTDLDKLDPDGEVDKRSRERKNLIRSLERCAVFEQKARSYFQFMNERYSQRDSLAEHNQNRKITKRNTEQSIEELQINLGKQISDTKLFIKKLNMQSHASEDLLVLLNESHRDCEQSGINATFAEHQPSNQADLSISFCNDCLEQFKSIHKRLSEQLNKFNDRFKKDHSASELYENWQKLVADNDHYQGAELLFKYRSPIADLLSSAEQKQKSTYQLVTVNANMINEFYQHIENFGQRIKQIGKKLSNNVTALTHFEALAEINVTTVMKQEELDYWGPLQVFAKAFELYRDQLREGVGEIPDELVQAMQRLSAYLPSEGFVLAHNNLFDIEFTITEKGHVKHARNAKQLKKVSSTGLSYLAMLSLFAGLLGMLRGSGENRSQIILPVDELGELAAENVDLLLQMFNDNNISMLSASPSTDRHILSLYQRHYKLKDNKIFHADIPASRLDELLAKRASAQNRLDSGVIKEFDESLGKEKLVQQVSTVNNESDASLAKEKAAQELS
>NC_008709.1|WP_011770184.1|2247045_2247669_+|hypothetical-protein
MFKQTVQKLLTGAVICETAYPEEFEYLKAGSNSGRVNDFLANLDRNLTCLESAEAYYCTFTQVDQSNSVELTALFTEMRATFRPLVEFLDLLLTASHADLPVRAKSVVNINTLFDPFEHDQTLRDQLRRLTSIKPFKTNKVETREQLVTVFQKLEEMHYLVRKNPGSSRYYATAKFDLIYILIEFLNDSEKVELPEEAQSQQEELLF
>NC_008709.1|WP_011770185.1|2247668_2248910_+|hypothetical-protein
MAGYDAGQVAELLRKIGSHDELLANAYVYGSVVTDQAEQRTINLLHKAGLLRPDDEPGEFRLTTDFKRMLNRLMRKQSSYRQLTDMGKVIEALDETVYDFQQAVQAKQSDDAEFYLDQLDDLLYETKDGLNTNLENMHYAIVSQFGFVSTLTNKIRQNERYLNHAQNLLTELQQIDPESCYEWINWPCPNDFARKITGFIYWFNQTLPRLRFIIDNMRLSLFRLRRDEKQASQLRNMARYLRQHPEFELKEQLFEEPGFPESLKFAPAMNLCSYVDPHNTAIETPLMNLVQSLRKQNNQPVNKQRESATVVISSIEKLVYESDFFEEQSDSLFEQAIETEQPVSAIAFWQKYQLDWVRQNQHIHPKAWIELVFSCYCKLTNDQQAALDIKMIGSADVGVPDNYTYNDLEIILR
>NC_008709.1|WP_157035344.1|2249110_2249602_+|L,D-transpeptidase-family-protein
MKNLFIIILFMLPLIAGANTLLPLADQVVVEKSKRKMYLIKQGVVYREYPIALGYRPIGHKGKEGDKRTPEGRYIIDYRNPESRFYLSLHINYPSEKDLQSAADNNVSPGGEIFIHGQPNNTKHHPSKFRGRDWTDGCIAITNQDIKQFWTLVKDGTPIEIRP
>NC_008709.1|WP_011770187.1|2249748_2250579_+|hypothetical-protein
MDFNKHRPFHIKFYMLVILSSSMLFGCATYNMDGHIFSTMNGALDYQKMMYKEQIEEVKTSQYFGGSIFINVPSDFLLTQPPFVTGEPDSALQHYFLSLYKQDFKAVKYAIEKSNMFNSVKVGQVDSYLNYSTKYGYRYLAVSNGDGSWTINDLYLGANRVARFPKNFSRRIDLLENIIIEFETEKSSEQLFSEYIPINETFFFDEKTGKGSLSVNGQGIKTRHWMLKKIADFTGAKKVHSGADEYLPAQLFTVLDEQIQDGLFTIKFDTNVPSYH
>NC_008709.1|WP_011770188.1|2250726_2251233_+|DUF3087-domain-containing-protein
MQLVLINKQRYRRHLNIVIAACITTLVIGSLGVAQLLILLFPDPSGSHFYWNLLGVIATCLLLVTLLLKFKTHDFMTEVTYVWDLKQSLNKITRAMRKLKMAANQGNENAMNALQYSYDGSRQLWLLDDNVLTLESLDDSQKELDQLAIKYDFLLDAKNYRSELLKSL

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Crispr_ID: NC_008709_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_13

2545067-2545348

Orphan

I-F

Consensus_repeat	Method
GATTGTTCGCTTTTTTCCTAAGCTGCCTGTGCGGCAGT	CRISPRCasFinder
TTTTCTAAGCTGCCTGTGCGGCAGT	PILER-CR

4 spacers

The CRISPR arrays of NC_008709_13

>merge|NC_008709|13|2545067-2545348|CRISPRCasFinder,PILER-CR
GATTGTTCGCTTTTTTCCTAAGCTGCCTGTGCGGCAGTAAACCCCAATAATGGCTTTATAAACGATTGTTCGCTTTTTTCCTAAGCAGCCTGTGCGGCAGTGAACTTCACCAGCAAAGTGTAGAACAGTTTTTTATTTTTCTAAGCTGCCTGCGCAACCGTGAATATTTTAATGTTTCAAACTGTGATCAATTCGAATTTTCTAAGCTGCCTGTGTCGCAGTGAACCTACACAAACATTTGCATTAAATTCAAAAGAACTTCTAAGCTGCCTGTGCGGCAGT

>NC_008709|13|13|2545067-2545167|CRISPRCasFinder
GATTGTTCGCTTTTTTCCTAAGCTGCCTGTGCGGCAGT	AAACCCCAATAATGGCTTTATAAAC
GATTGTTCGCTTTTTTCCTAAGCAGCCTGTGCGGCAGT

>NC_008709|13|2|2545080-2545348|PILER-CR
TTTCCTAAGCTGCCTGTGCGGCAGT	AAACCCCAATAATGGCTTTATAAACGATTGTTCGCTTT
TTTCCTAAGCAGCCTGTGCGGCAGT	GAACTTCACCAGCAAAGTGTAGAACAGTTTTTTAT
TTTTCTAAGCTGCCTGCGCAACCGT	GAATATTTTAATGTTTCAAACTGTGATCAATTCGAATTTTCTAAG
CTGCCTGTGTCGCAGTGAACCTACA	CAAACATTTGCATTAAATTCAAAAGAACTTCTAAG
CTGCCTGTGCGGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770397.1\|2540878_2543590_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|227334
NC_008709.1\|WP_157035351.1\|2532302_2533898_+\|amino-acid-carrier-protein	unknown	unknown	gnl\|CDD\|376500
NC_008709.1\|WP_157035352.1\|2543847_2544405_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_008709.1\|WP_011770406.1\|2553734_2554424_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_008709.1\|WP_011770392.1\|2530319_2531576_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NC_008709.1\|WP_011770408.1\|2556256_2556508_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770388.1\|2527764_2528250_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_008709.1\|WP_011770404.1\|2551559_2552681_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_008709.1\|WP_011770400.1\|2547388_2548141_-\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176505
NC_008709.1\|WP_083761753.1\|2534023_2535169_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NC_008709.1\|WP_011770405.1\|2552673_2553480_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|273651
NC_008709.1\|WP_011770399.1\|2546578_2547346_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_008709.1\|WP_011770407.1\|2554973_2555849_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NC_008709.1\|WP_011770396.1\|2538885_2539770_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_008709.1\|WP_049753028.1\|2535897_2538393_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
NC_008709.1\|WP_011770401.1\|2548419_2549727_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NC_008709.1\|WP_011770403.1\|2550710_2551559_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NC_008709.1\|WP_011770389.1\|2528601_2528943_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NC_008709.1\|WP_011770391.1\|2529693_2530236_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_008709.1\|WP_011770402.1\|2549829_2550711_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770397.1\|2540878_2543590_+\|diguanylate-cyclase	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	3.36165e-46
NC_008709.1\|WP_157035351.1\|2532302_2533898_+\|amino-acid-carrier-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	1.00338e-154
NC_008709.1\|WP_157035352.1\|2543847_2544405_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.96625e-13
NC_008709.1\|WP_011770406.1\|2553734_2554424_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	5.85609e-105
NC_008709.1\|WP_011770392.1\|2530319_2531576_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NC_008709.1\|WP_011770388.1\|2527764_2528250_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.40225e-13
NC_008709.1\|WP_011770404.1\|2551559_2552681_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NC_008709.1\|WP_011770400.1\|2547388_2548141_-\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	5.17281e-123
NC_008709.1\|WP_083761753.1\|2534023_2535169_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	5.33798e-165
NC_008709.1\|WP_011770405.1\|2552673_2553480_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI\|TC0379 and OMNI\|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	2.37848e-12
NC_008709.1\|WP_011770399.1\|2546578_2547346_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.12292e-57
NC_008709.1\|WP_011770407.1\|2554973_2555849_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.12973e-88
NC_008709.1\|WP_011770396.1\|2538885_2539770_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.97691e-28
NC_008709.1\|WP_049753028.1\|2535897_2538393_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NC_008709.1\|WP_011770401.1\|2548419_2549727_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	2.66153e-171
NC_008709.1\|WP_011770403.1\|2550710_2551559_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	2.21648e-122
NC_008709.1\|WP_011770389.1\|2528601_2528943_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.62623e-10
NC_008709.1\|WP_011770391.1\|2529693_2530236_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	5.28151e-38
NC_008709.1\|WP_011770402.1\|2549829_2550711_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	7.26141e-119

>NC_008709.1|WP_157035352.1|2543847_2544405_-|GNAT-family-N-acetyltransferase
MIKLQSPNHKFKRYALRGNMEIRRIKYSDLSGFVNLWQGVFKEGKYLSTPPPPAGGIGAVLQKVEVHKIPQFVAIVENELVASAEAFPGDMCGLKGDNTSQIGVVGAHVRQSMRGQGIGRSLLKILIADSKRYGYSKLILEVYESNKPAKKFYESFGFIDNGFGRDVIFPSGLKVRSERMYLLLG
>NC_008709.1|WP_011770397.1|2540878_2543590_+|diguanylate-cyclase
MSDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISERPLNTDIKDKIKADFPLLKTTYLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFKNKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDEIEKIDPQMFTDHQVGLHEYRGTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMISYKDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQEVISTDDDGERHLLNMKKIPVQDKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKESLIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASETHDGAYYKNIEQLLEADGSWQGDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTGLHNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKNCLYGKYTLGRFVKDQFIIIIDELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGISLSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTLGLNKEFELEKELKQALLSDQLDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKACLKAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDASADILSNLDNANKMGFTLTVTNFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQLKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAKVVVHKKVMSASEATFYLHCNKHR
>NC_008709.1|WP_011770396.1|2538885_2539770_-|alpha/beta-hydrolase
MIFEDQFTKTTVKTTGAQINVLQGGSGAPLLLLHGYPQTHVMWHEIAPSLMQHFHLICPDLRGYGDSSKPFGSADHATYSKREMAKDMIEVMESLGYSEFFVAGHDRGARVVHRMALDYPEKIKKACVMDIVPTHHMFKTTDQQFATGYYHWYFLIQPDNLPERMIGADPAYYLGESLKRWSASGAVFKKEAVDEYIRCFSSAETIHASCEDYRAAASIDLKHDQQDMSQKMLSPLLVLWGAEGFIERNYNVLDVWREHAVDVQGKSLQCGHFLAEEAPLAVCEELLRFFDYPK
>NC_008709.1|WP_049753028.1|2535897_2538393_+|excinuclease-ABC-subunit-UvrA
MPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVAFTGVSGSGKSSLAFGTIFAEAQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQRRGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESDSFSPNTAMGACPTCQGLGTAHTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWILFTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICAGSGLRSEALAVTFNGHTIADLNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDLGLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLDEPSAGLHPADAEPLLAVLEELKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLFANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVLAEAVGLHLHPDEDPIAGTASTGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQKPIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRFSFNVPGGRCETCLGEGFVAVGLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLETLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLLLTQLNRLVDAGNTVIVVEHDMDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASRTAPYLARCVST
>NC_008709.1|WP_083761753.1|2534023_2535169_+|alanine-racemase
MGATSTVNYKNTHLTRAIIHLDHLTHNMKVLQKKAGKRPLFPAIKANAYGHDAEIIAKHLISLGYTTLCTAHLSEAAELVEKGVNATFIILSPTLAENSDYLLDYDFQPIVSSQVQLQALAQAARRRDKQITIHVKVDTGMGRMGVRPDQLLMFLDECKAQPEIIIGGVCSHFPRADENNLSFSKTQINTFTALKKETKAYNIPLYHIANSAALFALEEAHLDAIRPGISIYGLKPSVSMVVPELNDLKPIMSLVSRITLLKEVVQDTGISYGHLHYTDKPSLIATIPIGYGDGLSRSLSNRIEVLIGNERCRQIGNICMDQCMIDVTQLRGKVSIGDEVVIIGTQGSETITADDLAKKQHTVNYEIVTAISSRVPRIVAQ
>NC_008709.1|WP_157035351.1|2532302_2533898_+|amino-acid-carrier-protein
MKIKKSIFSLVIFITTLLQSQAVFAAGSIGTAINDTFANATGWFVSLIFAPIPGTSFPWIVTWLVIAAVVFTLYFRFIQFRAIRHAIDLIKGDYSDPKNPGEVTHFQALTTALSGTVGLGNIAGVAVALSIGGPGATFWMVLAGLLGMASKFTECTLGVKYRKVNADGSISGGPMHYISKGFAERGIPGGKIMASIFAIFCVLSSFGAGNMFQANQAHAQISNITGAYPGWITGVIFAVLIFAVIVGGIKSIANVSEKVVPFMAILYVTTALIILGANADQIGWAFTQIFEGAFTEVGLAGGIVGALIQGFKRAAFSNEAGVGSAPIAHSAVKTNEPITEGLVSLLEPFIDTVVICTMTALVIIISGQLLVDANTGLYLLGENGQILTASGASGVALTSVAFGQTASWFPYVLAVAVVLFAFSTMLSWSYYGLKAWTYLFGESKATEMSYKILYCCLIIVGAAASLGAVIDFSDAAMFAMAIVNIIGLYFLMPVVKRELNSYMSRLHSGKIKKFVEEEDDADIALPAEDKI
>NC_008709.1|WP_011770392.1|2530319_2531576_-|D-amino-acid-dehydrogenase
MQVCVLGAGVIGLTSAYYLAKKGFQVTVIDRQPGVALETSFANAGQISPGYSAPWAAPGIPFKAVKWLMQKHSPLRLSPEPEMKKLLWMAKMLGQCNGDDYNLNKSRMMALAEYSRDQFIALRKEIGISYQDGQSGTLQLFRKDEQVEASEKDIKVLKALGVPHQVLSPEQIAQVEPGLAPVIDKFKGGLRLTGDETGDCYLFCQSLKEKCENLGVTFQFNSDIKSLSVQANKIKGVETQFGVQAFDKVLVCLGSYSKELLKACDIDIPVYPVKGYSLTIPISNEKYAPLSTVMDETYKVAVTRLGDRIRAAGTAELSGYNLDLPKSRTDTISHVVGDLFAQGCDLSLADYWTGLRPMTPDGTPVVGASGIDGLYLNTGHGTLGWTMSCGSGAVIADIIAGSKTEIDSEALSAKRYKA
>NC_008709.1|WP_011770391.1|2529693_2530236_+|NAD(P)H-dependent-oxidoreductase
MKKILAFSGSNNSQSINQNLINITASKVKHNDVTVIDLKDFPLPIYSIDIETQGIPEEAKRLKKIMFGHDALIIASPEHNGSMPAFLKNTIDWLSRLAKPGQSFFGETKKPVLLLSTSPGATGGATNIKTMAELMPWWGGDVKGTYSLGSYYEKFSDGKFDLNTDQELTDLVRLFESTFK
>NC_008709.1|WP_011770389.1|2528601_2528943_+|BON-domain-containing-protein
MKNSHKLLVLSATLISAIVLTGCNNQEDIAAKILLPTKIISEVNDSDVNIRIKAALFADQALKYLEIKVQTHKGDVLLTGEVDSQNRIDHVNKLVMSIKGVHTTHNHLIIKTS
>NC_008709.1|WP_011770388.1|2527764_2528250_+|MarR-family-transcriptional-regulator
MEKYEQLLISLRRVIRSISIHSRKLHKESGLTVPQLMVMRKIAQLDQPLAKQIAQEITVSAATVTTILDRLQSRHLIIRTRSETDKRKVHLSLSEVGQKLLNDLPKAPLQEHFIKRYQHLEDWEQSQLLSAVERIASMMDAAELDAAPVLLVGKMRADESL
>NC_008709.1|WP_011770399.1|2546578_2547346_-|DeoR/GlpR-transcriptional-regulator
MQKLSLRQQTIIDMIGHQEYCSIDELAQHFNVTTQTIRRDINQLCAIGLACRHHGGVGLPVTLANRSYVSRKVTNQAEKQHIAASVVAAIPNGCTLFLGIGTTIAGIAEKLVNHSELRVVTNNFEAAHLLSQFDNIETWIPGGRIRSNDRDVVGDSIGAFYGQFIADIGIISCGSINPIEKPVALNSLAVQSEGEMQEYAFEYELREAIVSQAIISGSRQKWLVANSAKRQQKANAKVAPLSHFDRVFGGVTDKN
>NC_008709.1|WP_011770400.1|2547388_2548141_-|glycerophosphoryl-diester-phosphodiesterase
MKITAHRGGSSLAPENTLAAFNKAAELGCEWIEIDVQLSIDEVPVVIHDQTVERCTDGSGAVSSMTLDSLKSLDAGLWFGEEFRDERIPTLEETLLLARNTNLNVNIEIKLYRQDDLVLLCEKIKKVIIDLDVEASQILFSSFNIEALKYMQYHQPQIRRGLLVETIPANVLLLLAEIEAYSLHCNYVFLKEQQAKLIKKSGYQLYCYTPNSPQQVSQHWDWGVDMMITDVPQAYINILTYDKFKLINSN
>NC_008709.1|WP_011770401.1|2548419_2549727_+|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MSIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVYKGSYAETMTSAIAAFRAQQQPAIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNYLSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIKSAPKTWQEMEDVSVKLLASGAQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKSGIFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQNTIIGGASLWVLRGHSDEQYKGVAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGFYKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINEELESVWSGDQSAQVALNNAVRLGNEQLRRFERTQQ
>NC_008709.1|WP_011770402.1|2549829_2550711_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSQAVFKNKWLPIALITPQLLITAVFFLWPAGQAIFQSFQLEDPFGLSSEFVGLENFIHLYNDSNYLDSLFTTLQFSISVAFLAMISALILSAFAEHIVRGSLFYRTFLIWPYAVAPLVAGSLWLFLFDPTIGVIAELLQWFGINWNPTLNDAHAMWMVIITSTWKQISYNFLFFLAALQSVPKSLHEAAAIDGSGPVKRFITISFPLISPTSFFLLVINFVYAFFDTFGIIHAMTQGGPGRSTSTLVYKVYNDGFIGLNLGSSAAQSVILMIMVALLTVFQFKYIEKKVAY
>NC_008709.1|WP_011770403.1|2550710_2551559_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MVERRPLFTLFCHIILILGILSIAFPVWVALVATTHENTAFATGTPLWFGDLGFSVFSDLLSNKSTFNNSQLPITHMLFNSMVMALCITVGKLTISIMSAYAVVFFRFPGRMLAFWIIFFTLMLPVEVRIIPTFEVITNLNMLNSFSGLTIPLIASATATFLFRQFFLTVPKELFEAARIDGAGPIRFFIDILLPLSRTNIAALFVITFIYGWNQYLWPLLITTDVQYYTIVMGIKQMLGVVDGLIEWNKIMATTIIAMLPPVIVVIAMQKAFVKGLVDSEK
>NC_008709.1|WP_011770404.1|2551559_2552681_+|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MSTLTLSNITKSYPNGYQAVHKLSLNIEDGEMVVLVGPSGCGKSTLLRMIAGLEEITSGKLKIDDCLVNNLEPSERDIAMVFQNYALYPHMSVYDNMAYGLRNRKTPKADIQRIVNDTAEMLEIDHLLERKPKELSGGQRQRVAMGRAIVRKPKIFLFDEPLSNLDAKLRVQMRLQIKKLQRRLATTSVYVTHDQVEAMTLADKLVVLNQGTVEQVGTPLEIYDNPASVFVATFIGSPAMNILDAKVTNKGLTLGSSLSPIDTQSLKPGDIKLGLRPEHINIVEKSPWFEVEVELIESLGADLLLYCKTLDCKEMDETDQNLVVRAEGHSKIEIGDILGLDIDQKHLHLFDADTSKHIEIDLKMNDQKELLYA
>NC_008709.1|WP_011770405.1|2552673_2553480_+|HAD-IIB-family-hydrolase
MPKPLADMSVTQASAIKWLLTDVDDTLTWQGKLPPETLIALEKLTAVGINVVAITGASAGWCDQIARLWPVHGVIGENGAFWMQKNATGFITRESIPIDTMKSQQMALIKHLRLLLEDYPDIDFACDQSFRYCDVAINLSQDRPPVDQKICDELLIKVRNLTVDGQSVNATLSSIHLNVWIGNHNKRLSAEQYLFAHNVQMNFNEIAYIGDSLNDEAMFAWLPLTFGVKNIERLLPQFETKPAYITNKNGGYGFAELADFILQAKESR
>NC_008709.1|WP_011770406.1|2553734_2554424_-|aspartate/glutamate-racemase-family-protein
MKTVGLLGGMSWESTIGYYRAINEGIKNSLGGLHSAKIVIYSVDFDPIEKLQHEGDWDGTAEILIEAAKNVQSAGADFLLICTNTMHKVAPQIEKAIDIPLLHIADATAEVLVKNGIKTVGLLGTAFTMEQDFYKSRLSENYGLTVLVPNEIDRAIIHNVIYKELCLGKMLPASKVEYLRIIESLANQGAEAVILGCTEIGMLVEQADTKVTLLDTAAIHAQKAVEYAI
>NC_008709.1|WP_011770407.1|2554973_2555849_+|SMP-30/gluconolactonase/LRE-family-protein
MNKPKVLFNYIGHLPECPTWDATTHSLLWTDIIEQQVHRFFPESEKHTVISFNEEVGCFALREKGGFILAMRTGIFLTNEQGEVESRVCENPNNPLLARFNDGGVDQDGRFYAGTYWEPKTFNGALLLRIDSDLRPKVIQNDILCANGLAFSPDKQWMYTSDTPNHVIYRTPMTENGELGLREIFKTFPIGKGCPDGAAVDVEGCYWTAMFDGHRIARISPTGEVLEEHELPVRCPTMVCFGSDDMKTLYITTTRENMEEIELAERPLSGALFSIRTAVAGMIKPNFKEEK
>NC_008709.1|WP_011770408.1|2556256_2556508_+|hypothetical-protein
MSNEANTITNLTELETFLISVENDGLGLTNVAGVAMATNNKDGRRFVAVLDDQHQLLLSHWITEEVFQTGQDLVRNGTKRKAH

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Crispr_ID: NC_008709_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_14

2564029-2564119

Orphan

Consensus_repeat	Method
GGTGCATAGAATGCACCCTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_14

>merge|NC_008709|14|2564029-2564119|CRISPRCasFinder
GGTGCATAGAATGCACCCTACCATTACATTACCCGTAGGGTGTGCTCCGCGCACCAAACATTATCAGCGGTGCATGGAATGCACCCTACCA

>NC_008709|14|14|2564029-2564119|CRISPRCasFinder
GGTGCATAGAATGCACCCTACCA	TTACATTACCCGTAGGGTGTGCTCCGCGCACCAAACATTATCAGC
GGTGCATGGAATGCACCCTACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_041766402.1\|2556791_2556998_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770421.1\|2575305_2576325_-\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NC_008709.1\|WP_083761756.1\|2568825_2569365_+\|CIA30-family-protein	unknown	unknown	gnl\|CDD\|369941
NC_008709.1\|WP_011770406.1\|2553734_2554424_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_008709.1\|WP_011770418.1\|2570987_2571335_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770413.1\|2564141_2566928_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|366376
NC_008709.1\|WP_157035353.1\|2571668_2572037_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770414.1\|2567515_2567926_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NC_008709.1\|WP_011770409.1\|2557171_2557363_-\|DUF3185-family-protein	unknown	unknown	gnl\|CDD\|378652
NC_008709.1\|WP_083761755.1\|2562233_2562707_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176233
NC_008709.1\|WP_011770417.1\|2569536_2570466_-\|glucosaminidase	unknown	unknown	gnl\|CDD\|225539
NC_008709.1\|WP_011770420.1\|2572544_2574194_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377188
NC_008709.1\|WP_011770407.1\|2554973_2555849_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NC_008709.1\|WP_011770412.1\|2563045_2563855_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NC_008709.1\|WP_011770422.1\|2576403_2577450_-\|proline-racemase-family-protein	unknown	unknown	gnl\|CDD\|226448
NC_008709.1\|WP_011770405.1\|2552673_2553480_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|273651
NC_008709.1\|WP_011770411.1\|2559105_2562021_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182930
NC_008709.1\|WP_011770408.1\|2556256_2556508_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770415.1\|2567925_2568684_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NC_008709.1\|WP_083761754.1\|2557792_2559034_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770421.1\|2575305_2576325_-\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	7.05908e-104
NC_008709.1\|WP_083761756.1\|2568825_2569365_+\|CIA30-family-protein	gnl\|CDD\|369941	pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30). This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.	3.01595e-57
NC_008709.1\|WP_011770406.1\|2553734_2554424_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	5.85609e-105
NC_008709.1\|WP_011770413.1\|2564141_2566928_-\|beta-glucosidase	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	4.96055e-63
NC_008709.1\|WP_011770414.1\|2567515_2567926_+\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	8.09616e-32
NC_008709.1\|WP_011770409.1\|2557171_2557363_-\|DUF3185-family-protein	gnl\|CDD\|378652	pfam11381, DUF3185, Protein of unknown function (DUF3185). Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.70221e-14
NC_008709.1\|WP_083761755.1\|2562233_2562707_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	4.94534e-57
NC_008709.1\|WP_011770417.1\|2569536_2570466_-\|glucosaminidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.0831e-37
NC_008709.1\|WP_011770420.1\|2572544_2574194_-\|hypothetical-protein	gnl\|CDD\|377188	pfam03995, Inhibitor_I36, Peptidase inhibitor family I36. This domain is currently only found in a small set of S. coelicolor secreted proteins. There are four conserved cysteines that probably form two disulphide bonds. Proteins 2SCK31.15C and SCO3675 also have probable beta-propellers at their C-termini. This family includes Streptomyces nigrescens SmpI, a known peptidase inhibitor of known structure. This protein has a crystallin like fold pfam00030 and is distantly related by sequence. It is not known whether other members of this family are peptidase inhibitors.	9.86391e-05
NC_008709.1\|WP_011770407.1\|2554973_2555849_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.12973e-88
NC_008709.1\|WP_011770412.1\|2563045_2563855_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14508e-51
NC_008709.1\|WP_011770422.1\|2576403_2577450_-\|proline-racemase-family-protein	gnl\|CDD\|226448	COG3938, COG3938, Proline racemase [Amino acid transport and metabolism].	6.88323e-173
NC_008709.1\|WP_011770405.1\|2552673_2553480_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI\|TC0379 and OMNI\|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	2.37848e-12
NC_008709.1\|WP_011770411.1\|2559105_2562021_-\|AAA-family-ATPase	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	3.37059e-104
NC_008709.1\|WP_011770415.1\|2567925_2568684_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.97922e-64
NC_008709.1\|WP_083761754.1\|2557792_2559034_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.11166e-61

>NC_008709.1|WP_011770412.1|2563045_2563855_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLADLSQMSDVKTLANKIKAQYDNLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQELLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYAQSKLAITMWSRIMAQTLKDKGPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRFCSPHPDGLNLQKSAELVTTIESILSGIKH
>NC_008709.1|WP_083761755.1|2562233_2562707_+|zinc-binding-dehydrogenase
MVNGAAILLLLPIRGISLCATAINYKTETLADYLEKYTAGHGFDIVFDTVGGLNITNSFAAAALNGQVVSTVALLELDLSPAHFKGLSLHVVFMLIPMLYNHKREEHARILSRLATIVEVGALRPILDENRFSLAEVGQAHARLASGAGMGKVIVEI
>NC_008709.1|WP_011770411.1|2559105_2562021_-|AAA-family-ATPase
MKSISSTVFGHLFGHPAAISIGPKGVILSVKKTPTKISWQALISPPTFTFGWLGQTVSFRLAGQTYVLNHLAYNCKKKHKTDCEQWWAEANKNRLFGLLTKIKKVKNRRYLRQSTFNNMQLAIAKEYNRWFPWAASSQGAAHLAKIVTVLAQYQHWQEQDITLCREAYITRQLKNYQRFFDRVEENPLTLRQRRACIIDDDNNLLLAGAGTGKTSVMIGRAGYLLNSQQAKHHDILLLAYGRKAADEMDQRIKEKLQTDNISATTFHRLGLDIIAQVEGGKPNLSVFAEDEKVKAKWVQACFETLIQKQDKYRDLVMAYFSEYYYVEKSYFEFTSLGEYYQYLTDNDIRSLKGDKVKSFGELHIANWLCNHGIEYQYEASYAFDVKTVASRQYQPDFFLPALNTYIEYYGIDENGDTAPYIDKQEYHASIAWKRKTHQKNNSKCIELTYAQHKQGRLLSSLEKSLKNENIVYKWFPDGVLLAGLKETGRMTLLAEIFAKLIGLYKAAYLDEWSEKRVIRNSTDAKKTEKAFELLKPILSAYQARLLNRNEIDFEDMIIKALAYVETGKFISPWRYIMVDEFQDISEPRARLVKALRGSNKSTSIFAVGDDWQAIYRFSGADITLTTGFEDYFGPTTQTELDQTFRFNNRIAQVATDFVSKNPAQINKMIKSFKHQDEPAVSILRKSAGGLKAQDEKIIDEIVNGAVDEVLTAITGQIDKPATVYLLARFWFQLPDKASVCHLNNQYPQLNIQTHSFHGVKGKEADYVVIMGLKSGKHSFPSNKAIPPILDALLAKEEKFEHAEERRLFYVVLTRAKQRVYIIADMSDTSCFVKELINDHDVELDEFGITVNQTFVDQIHCLVCETGTLKTRSNRFGTFVSCSYFPRCDYKERACESCQSVMSTTRHKGFKICLNQRCNNIYPLCEKCGAEMVLRKSARGEFWGCRNYSGNEQTSCRNAIAKGKIQWPEMQG
>NC_008709.1|WP_083761754.1|2557792_2559034_-|EAL-domain-containing-protein
MTKNMALYEHLEEIIVSEQLTSLFQPIYATNSSEVYGYEALIRGPYDSPLHNPEALFDAAIEYNLLSELELICRKKSIARFVELGLKGLLFINVNPMVFLQSDHPQGKTLSYLTEHKLKPEQVVIELSEKYPIDDPDILQKALIYYRDLGFKIAVDDLGSGYAGLKLWSEVKPDFVKIDRYFIDQCDKDPIKSEFIKSIFNLGQRINAKVIAEGIETEEEFWLLDELGISIYQGFLFARPMLSPSATVSAVIQNRDRLANLALNNESLLSPLLQIIIPVNFDQTTKTVLDYLHQHPELDSIPVVKEDKPVGMILREHILALFSTPYGKTLHENKPIHENMIDSPVIVEAKTPLDEVAQWVTCGDDEKLLWHFIIADKGRYLGIGSVRDLLRQLIQPNTRSANSVTRLPTIFAA
>NC_008709.1|WP_011770409.1|2557171_2557363_-|DUF3185-family-protein
MKIISIVLIVLGIGLAVWGYQLSGSVESEITQAITGSDTDRVMTYYIAGAVNFVVGIYLFSKN
>NC_008709.1|WP_041766402.1|2556791_2556998_-|hypothetical-protein
MSDTQSNEKQEVTIVDIKMPFMSMVIFLVKLAIASIPAFIILSVIFMIFGVLFGGVFHGMGMGVMGRY
>NC_008709.1|WP_011770408.1|2556256_2556508_+|hypothetical-protein
MSNEANTITNLTELETFLISVENDGLGLTNVAGVAMATNNKDGRRFVAVLDDQHQLLLSHWITEEVFQTGQDLVRNGTKRKAH
>NC_008709.1|WP_011770407.1|2554973_2555849_+|SMP-30/gluconolactonase/LRE-family-protein
MNKPKVLFNYIGHLPECPTWDATTHSLLWTDIIEQQVHRFFPESEKHTVISFNEEVGCFALREKGGFILAMRTGIFLTNEQGEVESRVCENPNNPLLARFNDGGVDQDGRFYAGTYWEPKTFNGALLLRIDSDLRPKVIQNDILCANGLAFSPDKQWMYTSDTPNHVIYRTPMTENGELGLREIFKTFPIGKGCPDGAAVDVEGCYWTAMFDGHRIARISPTGEVLEEHELPVRCPTMVCFGSDDMKTLYITTTRENMEEIELAERPLSGALFSIRTAVAGMIKPNFKEEK
>NC_008709.1|WP_011770406.1|2553734_2554424_-|aspartate/glutamate-racemase-family-protein
MKTVGLLGGMSWESTIGYYRAINEGIKNSLGGLHSAKIVIYSVDFDPIEKLQHEGDWDGTAEILIEAAKNVQSAGADFLLICTNTMHKVAPQIEKAIDIPLLHIADATAEVLVKNGIKTVGLLGTAFTMEQDFYKSRLSENYGLTVLVPNEIDRAIIHNVIYKELCLGKMLPASKVEYLRIIESLANQGAEAVILGCTEIGMLVEQADTKVTLLDTAAIHAQKAVEYAI
>NC_008709.1|WP_011770405.1|2552673_2553480_+|HAD-IIB-family-hydrolase
MPKPLADMSVTQASAIKWLLTDVDDTLTWQGKLPPETLIALEKLTAVGINVVAITGASAGWCDQIARLWPVHGVIGENGAFWMQKNATGFITRESIPIDTMKSQQMALIKHLRLLLEDYPDIDFACDQSFRYCDVAINLSQDRPPVDQKICDELLIKVRNLTVDGQSVNATLSSIHLNVWIGNHNKRLSAEQYLFAHNVQMNFNEIAYIGDSLNDEAMFAWLPLTFGVKNIERLLPQFETKPAYITNKNGGYGFAELADFILQAKESR
>NC_008709.1|WP_011770413.1|2564141_2566928_-|beta-glucosidase
MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGSGGAVNVPYAVNALQGLRANPSININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPLADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTDAEILMLEKVNTYFDKVIIVLNVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLADYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGVGINQVLQFDIKVENIGEKYSSKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEILRVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVRHAQLISATLQLEQLLVTEKLTEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRLTDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAAAADGPSGIRMDSGHKATQVPIGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINIHRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTIKHFASNDQETARVDVDSVMSQRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTDWWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGELQRSAMNICRFIMEAPVMGRPLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTNTSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFSMSFSVNGTDGKLITTEGLKVKLENGHYTLDLDFVKSGLELEGLIFTKV
>NC_008709.1|WP_011770414.1|2567515_2567926_+|DUF393-domain-containing-protein
MLTIFYDGNCPLCSMEMKELRRYDQHNNIQLEDIHQSDFEQKFPDIDKIKATNILHGKLNGTPLFGLDVTCHAWRLVGKKPWIAALRFPIIKPVADWAYLLFAKHRIRISKLLMGNKSCENGQCSIKTADNTQEKK
>NC_008709.1|WP_011770415.1|2567925_2568684_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTDVKRCALVIGASSAIAQALIDNLLLDDELQVYAVSRSFPADFSDRMLNQKKLNLIECEYNSAQINAIIEKIKATSLPCVKVFICNGMLHNHSFLPEKKIEQFSADIFQQVMHVNAVVPGLWLQQLITLLRHPLPCVVTVFSARVGSISDNRVGGWYSYRASKAALNMLVKTAAIEYARRAKNVRLIVFHPGTTDTKLSRPFQSNVAPEKLFKPEFVATQLLSLIKPLALENYVSDNKAAFIDWQGKKIEW
>NC_008709.1|WP_083761756.1|2568825_2569365_+|CIA30-family-protein
MKYVLILVIIMTNINNGLAEDIDFNSKKFINSWQVVNDSVMGGISTSKIAIENNIVSFSGQLSFENNGGFASARYVLNKPIIAKDKVSITFKGDNRHYQLRLRTNTGPGAIAYKVDFYATANNWNSLIFKKSDFIPTYRGATVDDAPQLNLADVKQISILIADKQLPAFQLDISQIGFL
>NC_008709.1|WP_011770417.1|2569536_2570466_-|glucosaminidase
MKKFFSARYIALALISCLLIAACSYVLNSNTSESEKLMANPVEVTITSLDDLNTLFDKYQYNDENWDKGNREVPRITFEGVGKHWAEGSKKLPVETKKMIFFRLMTPLALVSNENILREREIVKSSPLEASKLKKIAIKYRIIEDKTAELDQKMRTALLARVDILPPSLALAQAAEESGWATSRFAQEGNAFFGQWDFTGNGMKPRAHREELGDYGVARFDSPLASVEAYMLNINSNSAYQKLRILRSELRANDKAVTGIKLAGTLDKYSERGQEYIHGLRAMIRYNNLEQVDQAYLSDNKLIHLITEK
>NC_008709.1|WP_011770418.1|2570987_2571335_-|hypothetical-protein
MKKTIKAVLLSAFIFPGVGHLLFKRYISAAILAATALTATYLLIAKVLESAMLIVDKIQRGEVAADITKISELASQQPSTDGWLGTDFISVILLITWLVAIVDCYRVGCSLKKKD
>NC_008709.1|WP_157035353.1|2571668_2572037_-|hypothetical-protein
MIKSIFSAVGIFAILALVIGMVADIRSADSTKGGYEYPFAGWSGKTIDFSAMYQTKDGLYKSGYVIDQFFNCHTGMISWEILGVIKGDFRKFSERAIVVHKPQDECRARGYNTDSWAISDLL
>NC_008709.1|WP_011770420.1|2572544_2574194_-|hypothetical-protein
MNINISSTEPTKVIMLRKALRLFSLSSIVLASSFLFPAEALAQCEPGPHEVAFFQHANFEGKCKVLGLKDYKNSSDLGIKNDSISSVKVGAEVQAFVCKDSFYRGECEVLNKNHKTLRNNVVKGDTISSAKIQLRNGSASCTPGRNQVAFYQHTNYKGACQVRGLGRYENSLKIGLKNDTISSVKLGTNSQAVLCRDSNFQGHCIVLKENRPTLKSWHVGNDETSSAKVQELGTQECQPKADQVALFMHSNFVAPCVVKNMGLYGNSSKIGLKNDSISSVIIGRDSQVLLCEHSNFKNCVELKGSDSNLGDNRIGHDQVSSLKVQPRGFKDCIPDSNEASFFEDSGYVGTCKVKSIGDYNNAASIGLANNSISSIRVGSSIQVCACGGDDFTQICEAFTMDDPSLDNNFPIYTTGNDLISSIKVQMRGSECKVKSIPPDPQDVFKQISVFNCHTDMRSVHLWTRNITIGAPFVERGVLSPQYSNGSCPSGASPRVISLIDGYLFEFVVVDTGQLTCEGRNDPSLGNCIRMPSRFILGDDDGLSLNIKVH
>NC_008709.1|WP_011770421.1|2575305_2576325_-|Ldh-family-oxidoreductase
MSHLTINLTLEEIYDLAKTALLSQGANEENAAAIANTVTIAERDGAISHGLFRIPGYIVGLQSKKVVGTATPEIEEVTPIIFRCDAKNGYAPLTHEHCLPPLIDAAKKFGLAAVAIQNSHHFAALWPEVEKMSEAGLIGLTTVSYLPWVAPAGGKTPIFGTNPMAFSWPRAGKNPVVIDMATSSMAMGEVMIAARDGYEVPLGTGLSESGELTTDAAEIVKGVLLPFGGHKGSALALMVELLSGPLVGETFSYETQERDKAEEGPARGGQFILAISPDILSGKNTSEQTDRFFEKYDAIEGARTPGARRHKNRENSGPRSVNADLVKTIEQLRTDGLIT
>NC_008709.1|WP_011770422.1|2576403_2577450_-|proline-racemase-family-protein
MRSSKLVHVVSCHAEGEVGDVIVGGVNPPPGDTLWEQREWIHKDNELRNFVLNEPRGGVFRHVNLLLPSKHPDASYAWIIMEPEDTPPMSGSNSICVSTVLLDTGLVPMVEPITEMTLEAPGGLVKVRAECDNGKARRIFVENVPSFACALDQALFVEGIGKLTVDIAYGGDSFVVVDPKELGIELTASNAGKIAKIGTKITDAANASLKFYHPEKDWKHFSFCLFAGELEKTETGFQALSAVVIKPGKVDRCPTGTSVSARMAILHARGVMKVGDTLLAVSVIGSTFNGKILRTCQVGDLEAIVPEISGRGWITGTHQHMLDPDDPWPQGYRLSDTWPMNEQDKGNN

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Crispr_ID: NC_008709_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_15

2794946-2795050

Orphan

Consensus_repeat	Method
GGAACTATTTTGAACAGCTTCAGCTGGCCAC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_008709_15

>merge|NC_008709|15|2794946-2795050|CRISPRCasFinder
GGAACTATTTTGAACAGCTTCAGCTGGCCACAACGTGGTGAAGAACAGCACGTTCTGAATACATAAAATCGTCTGGAACGATTTTGAACAGCTTCAGCTGGCCAC

>NC_008709|15|15|2794946-2795050|CRISPRCasFinder
GGAACTATTTTGAACAGCTTCAGCTGGCCAC	AACGTGGTGAAGAACAGCACGTTCTGAATACATAAAATCGTCT
GGAACGATTTTGAACAGCTTCAGCTGGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_083761791.1\|2800816_2801434_-\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NC_008709.1\|WP_011770609.1\|2805862_2808262_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182070
NC_008709.1\|WP_011770596.1\|2789339_2789927_-\|PhnA-protein	unknown	unknown	gnl\|CDD\|377140
NC_008709.1\|WP_011770607.1\|2801833_2803348_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770598.1\|2791473_2792859_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NC_008709.1\|WP_011770591.1\|2783398_2784529_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NC_008709.1\|WP_011770592.1\|2784652_2785669_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_008709.1\|WP_041766445.1\|2787371_2787860_-\|redoxin-family-protein	unknown	unknown	gnl\|CDD\|239264
NC_008709.1\|WP_011770597.1\|2790186_2791335_+\|methyltransferase	unknown	unknown	gnl\|CDD\|184963
NC_008709.1\|WP_011770601.1\|2795147_2795936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234684
NC_008709.1\|WP_011770602.1\|2795987_2796701_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_008709.1\|WP_011770604.1\|2799815_2800214_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|371708
NC_008709.1\|WP_011770595.1\|2788157_2789189_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|235474
NC_008709.1\|WP_041767215.1\|2796801_2798724_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_008709.1\|WP_083761759.1\|2793120_2793699_-\|cell-division-protein-ZapC	unknown	unknown	gnl\|CDD\|369220
NC_008709.1\|WP_041766449.1\|2803658_2804021_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770600.1\|2793736_2794747_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_008709.1\|WP_041766447.1\|2800501_2800690_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770608.1\|2804613_2805594_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770593.1\|2786304_2787318_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_083761791.1\|2800816_2801434_-\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	4.37315e-53
NC_008709.1\|WP_011770609.1\|2805862_2808262_-\|EAL-domain-containing-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	3.46203e-156
NC_008709.1\|WP_011770596.1\|2789339_2789927_-\|PhnA-protein	gnl\|CDD\|377140	pfam03831, PhnA, PhnA domain.	2.46322e-33
NC_008709.1\|WP_011770598.1\|2791473_2792859_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	4.47092e-175
NC_008709.1\|WP_011770591.1\|2783398_2784529_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	2.58763e-172
NC_008709.1\|WP_011770592.1\|2784652_2785669_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.70688e-53
NC_008709.1\|WP_041766445.1\|2787371_2787860_-\|redoxin-family-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.52855e-37
NC_008709.1\|WP_011770597.1\|2790186_2791335_+\|methyltransferase	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	1.57986e-124
NC_008709.1\|WP_011770601.1\|2795147_2795936_-\|hypothetical-protein	gnl\|CDD\|234684	PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase; Reviewed.	0.0065221
NC_008709.1\|WP_011770602.1\|2795987_2796701_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	8.06562e-69
NC_008709.1\|WP_011770604.1\|2799815_2800214_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|371708	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter. The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.	4.18149e-54
NC_008709.1\|WP_011770595.1\|2788157_2789189_+\|dihydroorotase	gnl\|CDD\|235474	PRK05451, PRK05451, dihydroorotase; Provisional.	0
NC_008709.1\|WP_041767215.1\|2796801_2798724_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	3.97285e-177
NC_008709.1\|WP_083761759.1\|2793120_2793699_-\|cell-division-protein-ZapC	gnl\|CDD\|369220	pfam07126, ZapC, Cell-division protein ZapC. ZapC is one of four FtsZ-binding components of the Z ring in bacteria. Formation of the Z ring on the cytoplasmic surface of the membrane is the starting process for assembly of the cell-division apparatus. It binds directly to the Z ring, and although it is not essential for absolute cell division it contributes to it by enhancing the interactions between the FtsZ protofilaments (or polymers) which aggregate to form the ring conformation in the Z ring.	9.67635e-66
NC_008709.1\|WP_011770600.1\|2793736_2794747_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_008709.1\|WP_011770593.1\|2786304_2787318_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	1.98582e-161

>NC_008709.1|WP_011770600.1|2793736_2794747_-|quinone-dependent-dihydroorotate-dehydrogenase
MFYQIMRSFLFMLNPEKAHDFSIKQLKLTQGTALDFIYRQRVQQRPVQVMGLTFPNSVGLAAGLDKNGECIDAFGAMGFGHIEVGTVTPVAQPGNESPRMFRVLESDGIINRMGFNNEGVENLIKNVKESNFKGVIGINIGKNFSTPVEQGKEDYLLCMDKVYPYADYIAVNISSPNTPGLRSLQYGDALNELLAALKIRQAELQVKYNKYVPIALKIAPDLSDQEIVSIAKSLLEYKIDGLIATNTTLDRDMVKGMSHAGEAGGLSGRPLQNKSTAVIAKFAAQLKGEIPIIGVGGIDNVIAAKEKIQAGASLVQIYSGFIYHGPQLVKNIVNNI
>NC_008709.1|WP_083761759.1|2793120_2793699_-|cell-division-protein-ZapC
MKVTLCKKTHRIIDFRPQANWYWLFDHNRAILTLNMGDRVIDIVYKPEMLILKFDQPVFFTIEDVANYMDLFEGPALGDYWPALRSQIILHALVANQFHKPIMPKNWLFESSVGEQPRVHKGDHIILKSSAIKEAKKYFVLDNDENFILCMLIEKSHGLTFNRNFVQFQIVKVTYDKIFATKADCNTLSQYV
>NC_008709.1|WP_011770598.1|2791473_2792859_-|sodium-dependent-transporter
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVPVMMAEVVIGKRGRSTPANAMTHVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAAYVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLIWTTLTIVAVVYVISKGVKEGLETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTLSLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLLFQSLPLAFGSMPFGDFVGVLFFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAGAAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTANILLPLGGILISIFAGWVIKPEILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK
>NC_008709.1|WP_011770597.1|2790186_2791335_+|methyltransferase
MNEALNIADQTLVLHRHPRIKNETLQAWDSADEYLINYFSENELQKQLNENEQILLVNDSFGALTCYLQAFQRTVVSDSYLSINSIKLNMQRNRCPEENLLLQDSLQQFPENVKIVLIKIPKTLSYLEEMLQKLHAVITPETIVVAAGKVNMIHNSTLDLFEKYIGTTKTSLAKKKSRLIFSLPIIKEVPEKEIAITWEIEKLDWKIHNHANVFSRNHLDIGGRFLMDNLPKGDFSKVVDLGCGNGIIGMAASAAYPKAQITFIDESYMSIDSARINMQKNLPEEQAENARFVVNNGLVGFKPRSYDLILCNPPFHQQQTITDQIAWSMFNDAHFCLVDNGELVIVGNHHLNYQDKLERIFGNCEIVSQNKKFVILRAVKMD
>NC_008709.1|WP_011770596.1|2789339_2789927_-|PhnA-protein
MPIKKALLERSNAACELCGSTSELSVFDVPPVAEPNSDKAVLVCATCLPQIEKNTEMDSNHWRCLNDSMWSQVPAVQVLAFRMLTRLAKNEGWAHDLLDMMYMEDETKAWADYNVAADQIEAVAATRDSNGTVLAGGDNVTLIKDLDVKGSSFTAKRGTPVRNISLTDNPEQIEGRVNGVRIVLLTQFIKKMPQD
>NC_008709.1|WP_011770595.1|2788157_2789189_+|dihydroorotase
MTTTRTITRPDDWHLHLRDGEVLKDTVRDTSRYMGRAVIMPNLVPPVTNTALALAYQARIFAAQPKAGFKPLMTLYLTDNTSADEIKKAKASGQIYAAKLYPAGATTNSESGVTSVEKIKEALQAMQEVGMLLLIHGEVTASDIDIFDREEIFLQKVLAPIVASYPNLKIVLEHITTANAVDFVNNAGDNVAATITAHHLMFNRNHMLVGGIRPHLYCLPILKRNIHQQALIKAATSGAKKFFLGTDSAPHAVNRKEAACGCAGCYTAHAAIELYAEVFEQAGALDKLEAFASFNGPDFYNLPRNSDTITLEKSAWDVPASMSFGNQQVVPIKANEQMLWKVL
>NC_008709.1|WP_041766445.1|2787371_2787860_-|redoxin-family-protein
MSRFVQFVTVLMILLTSSITVARQPEWLSELNLSEYQNKVVYLDFWASWCGPCRQSFPWLNAMHSKYRDKGLVIIAVNLDKDSNKADQFIKAFPADFLLYSDPKGISAQKYKITAMPSSYLFSGKGELAEKHLGFEKSEVARYEKNIVKLLDQLAGDNGNRP
>NC_008709.1|WP_011770593.1|2786304_2787318_+|low-specificity-L-threonine-aldolase
MIDFRSDTVTLPSPAMLQAMIYAPVGDDVYGDDPTVNDLEQWAAERHGFEAAIFCTSGTQANLLALMAHCERGDEYLCGQQAHNYKFEGGGAAVLGSIQPQPIENENDGSLSFAKLASAIKPVDPHFARTTLLSLENTINGKVLSLAYLQQARTFVNLHGLQLHLDGARVYNAAIALAVDIKEISQYFDSMSICLSKGLGAPIGSLLLGDKKLIAKARRWRKVLGGGMRQVGILAAAGKYALTENVTRLAEDHANAHYLAQQLSLLEGFTVNPALVQTNMVFAKLDPAINQQKLQDTLKEQGIILSTGNPVRLVTHLGISRIDIETFLTALKQALKP
>NC_008709.1|WP_011770592.1|2784652_2785669_-|diguanylate-cyclase
MKKNLTYEQLEAKVTLLEKKLKQSDRLINTSVKDYHFLQTLGNTIPTPIYFKDAQGIYRSCNDSFADIIFGVSKDQIMNHSLFDLAQYIPAELAPGYYAKDQYLFENPGKQVYQASVNCADGLVRIYVFHKATVHDKKNNVVGIVGVMLDVTELENQKLALQEKSQQLEVHSETDPLTGLHNRRKFNDIFANNLSIAKRQTRLLNFAIIDVDNFKNYNDTYGHVAGDNALILLSRFLQKRLLRADDYIFRLGGEEFGLLFYSDDEVSAREFANNIRQGVESLAIDHIQNENHELLTISLGIVTIKHKTKSISTIYEQADNLMYRAKNSGRNRILSLVI
>NC_008709.1|WP_011770591.1|2783398_2784529_+|carboxynorspermidine-decarboxylase
MRFNENQLTTPYFMVDEKKLIENLEKAKQLKKISGAKLVLALKCFSTWGTFDTIKPYLDGTTSSGPFEVQLGHETFGGETHAYSVGYSSHDINTVAPLSDKIIFNSLTQLATHFEAANPFASLGLRINPERSVAGQDLANPTRPYSRLGVKQDLLDLSIVDKVDGFMFHMNCENKDADAFIEILDYISNTFAEYLTHLKWLSLGGGIFFTAPDYPIEKLALALKAFSEKHQLQLYLEPGEAIITRTADLVVSVIDIVDNNKKTAIVDSATEAHRLDTLIYNEPASIGEASADGAFPYIIGSCSCLAGDQFCETQFDEALQIGQKLHILDSAGYTMVKLNWFNGLKMPSIYYKRVDGEIELLNSFDYQDYKDSLGKG
>NC_008709.1|WP_011770601.1|2795147_2795936_-|hypothetical-protein
MLRVIFCFFLLLTSLSCISQAYRINLTCQQAEKLGQLIWKNEGQQKQENLTTWNKNEDFPSLGLGHFIWYPGVEKGPFKEQFPELLQFFKNSGVVLPAWLARSEQAPWKSREQFYREFDQPQLTELRLLLNKHSDLQVQFIIKRLETGIPLILLNSNKTEMKVIHYQLARLTALPEGIFALLDYINFKGEGVLSKEAYQGQGWGLKQVLLTMPLKYDDPLRAFALSADEVLTRRVKNAPSNELHWLKGWRVRVHGYQSIMVN
>NC_008709.1|WP_011770602.1|2795987_2796701_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MFKKLNVLCVDTSTEACSVAVLCQTAAGQVINDQFMLAPREHTTKILPTVEQVLQSAGVNLSDMDFIAYGRGPGSFTGVRIGISIAQGLAFGSEKNMVGVSTLQAMAQQAFKMKGAQDVYAAIDARMGEVYFGHYQLDKKLMVLVNDEVVIKPADLIARQENIAENAVLVGSGWAAYPELSEHFNAPEETEIEFPSARFMLDEVINCIDKSLDILPELATPVYLRDKVTWKKLPGRE
>NC_008709.1|WP_041767215.1|2796801_2798724_-|ATP-dependent-DNA-helicase
MISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQNLVVEAETGTGKTFAYLAPALLTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERLARFMLETKQREKALQIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNNDNCLGRECPSFDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFDEAHQLPDIASLYFGESLSSRQLIELAKEIEFVYRTELREAKQMSKAADQLRLSALDFRMAFAIDKGTGSWRDKSKERVMQLHVDRILQVMDFLKEVILERLGKSDVLDHCFERLTQFTLLFKKLNSVNESGFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQESQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIRASKGRCFFLCTSHAMMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINHGNALLVATSSFWEGVDVRGQVLSCVIIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRAEKDKGVLIVCDTRLVTRKYGNLFLNSLPCMPRTRSLDNAIDFLKTID
>NC_008709.1|WP_011770604.1|2799815_2800214_+|nitrous-oxide-stimulated-promoter-family-protein
MSEHTLPGKLGLEFKTIKAMVAIYCQKHHSSTALMSGQKTLCACYAEFILYANEKLDRCPYGQNKPTCNKCPIHCYKTAQREQARIIMRYAGPRMLLSHPILAIKHLLAEQRPVPESIPDKASNRHIRNADK
>NC_008709.1|WP_041766447.1|2800501_2800690_-|hypothetical-protein
MERQICQEKFERWSLRQRPERRRAGRPVSFTAVQVYERVSSACPLISLGSALHMDVLSEPVR
>NC_008709.1|WP_083761791.1|2800816_2801434_-|nucleotide-binding-protein
MSILRGEKSLGEKRNDFTVKVEDKCHRLESIIERLELIPESRELISVNSIQNDKSKNVNYSQIFIVHGHDDSAKLEVARFIEKLGFEPIIIHEQPNASKTIIEKIEAFSNVGFGVVIYSPCDIGGKNKDNPELAGRARQNVVFEHGFLIGKLGRSKVCPLVTGNVETPNDISGIVYTSMDTSNWQIALAKELRTADYAVDMNDVI
>NC_008709.1|WP_011770607.1|2801833_2803348_-|hypothetical-protein
MNNTDDIVKVLRYIEENMRVTDQTSIEYLDAQGNIDRLSIRQNHIIFGRRGSGKSLLLKSLGQRSEFSCISVNMEDFKDISFPNSIIQVQKSILRQLLPIVKKVHGKYALAYWMKALPLKRKLTKQIKTLDEKLIDPDEYDKSFKETKAGKVFGKGKGKVGGSGFESGSEASEEIETSKQIKIDKLDILKNKLTDIKELFSEVAAFIGKDIYLILDDFYFIRKDEQPYFLDFFHRVSKNTPLYLKVATIKHRSKLYVQDSSYIGVEIPHDAQPLNLDYSLQDFDALVTFMKKLLKHINEKVGVEIDYSKLITDNAFRFLCLASGGVPRDFFSLLISLGPSLGGGKSISKPNVIEKAIESVANKMEHFKKDAANEDVLLEHYLWIIKGDIIDNKKWNAFLLSNSEVQNHPQINQAIKELVDLRFLHLVNPNISASNSDGTRYSAYMLDIGLFPNANPRGFHQVEPGQKDEHHRVDKIRSAPKLDLGSFSQRICELKAPLELELTD
>NC_008709.1|WP_041766449.1|2803658_2804021_-|hypothetical-protein
MSYQMMVLTHIIKKKSYCTGNTQFLKATSKDELISIIVNPNFHGNATTTFNTSFRPLFNINGDPNELGFVLFEGNCRIKVQENARKYATGRVCNHRTRAQGNPKKQYSLESKLKPKIITV
>NC_008709.1|WP_011770608.1|2804613_2805594_-|hypothetical-protein
MMARPRQTIVSLDDTPYYHCCSRVVRKAFLCGIDNTTGENYEHRREWVDSRIIELATIFAIDICAYAVMSNHLHIVLKVNADKANSWSDKAVLVQWHKGFKGTLLTQKFVKGEDLHGLELETVLNCITEYRHRLIDISWFMRSLSEPIARQANKEDNCTGRFWEGRFKSQALLDEAAILACMAYVDLNPIRAKMATTLETSDYTSIQRRIHSAIKGEQPAELLPFVGDERLNIPDGLMFSVMDYIVLVEDTGRIIREDKRGAISSSSQDILNRLNIPAENWLKITTEFGHLFKGAVGALPALTEYCEHLDRKRRHGAANCQRWLCA
>NC_008709.1|WP_011770609.1|2805862_2808262_-|EAL-domain-containing-protein
MTANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAKGIDIPVIFNAVRRNVDAESYTECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCADGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEAIHQQIADSAKNLTVWHQQYRVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIGDAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEYWVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDLDQFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYHVGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMALDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDRDFHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFVKDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAWKNITNTRLSGEDQ

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Click the colored protein region to show detailed information

Crispr_ID: NC_008709_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_16

2804316-2804420

Orphan

Consensus_repeat	Method
CTAACCATGCCACCCATTTTTCTA	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_008709_16

>merge|NC_008709|16|2804316-2804420|CRISPRCasFinder
CTAACCATGCCACCCATTTTTCTATTGAGCACGAGATACTATGGCGTCTTTAATATAACGCCCACAGAATCAATAAACTTGCTAACCATGCCACCCATTTTTATA

>NC_008709|16|16|2804316-2804420|CRISPRCasFinder
CTAACCATGCCACCCATTTTTCTA	TTGAGCACGAGATACTATGGCGTCTTTAATATAACGCCCACAGAATCAATAAACTTG
CTAACCATGCCACCCATTTTTATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_083761791.1\|2800816_2801434_-\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NC_008709.1\|WP_011770609.1\|2805862_2808262_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182070
NC_008709.1\|WP_011770613.1\|2811808_2813392_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NC_008709.1\|WP_011770616.1\|2814710_2815490_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_008709.1\|WP_011770608.1\|2804613_2805594_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770610.1\|2808350_2809163_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_008709.1\|WP_011770607.1\|2801833_2803348_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770601.1\|2795147_2795936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234684
NC_008709.1\|WP_011770602.1\|2795987_2796701_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_008709.1\|WP_011770604.1\|2799815_2800214_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|371708
NC_008709.1\|WP_011770614.1\|2813521_2813965_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_008709.1\|WP_041767215.1\|2796801_2798724_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_008709.1\|WP_011770612.1\|2811052_2811340_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_083761759.1\|2793120_2793699_-\|cell-division-protein-ZapC	unknown	unknown	gnl\|CDD\|369220
NC_008709.1\|WP_041766449.1\|2803658_2804021_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770600.1\|2793736_2794747_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_008709.1\|WP_011770617.1\|2815706_2816603_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_008709.1\|WP_011770618.1\|2817085_2818483_-\|DUF3494-domain-containing-protein	unknown	unknown	gnl\|CDD\|378786
NC_008709.1\|WP_011770615.1\|2814102_2814525_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_008709.1\|WP_041766447.1\|2800501_2800690_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_083761791.1\|2800816_2801434_-\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	4.37315e-53
NC_008709.1\|WP_011770609.1\|2805862_2808262_-\|EAL-domain-containing-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	3.46203e-156
NC_008709.1\|WP_011770613.1\|2811808_2813392_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	1.48373e-175
NC_008709.1\|WP_011770610.1\|2808350_2809163_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.08217e-34
NC_008709.1\|WP_011770601.1\|2795147_2795936_-\|hypothetical-protein	gnl\|CDD\|234684	PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase; Reviewed.	0.0065221
NC_008709.1\|WP_011770602.1\|2795987_2796701_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	8.06562e-69
NC_008709.1\|WP_011770604.1\|2799815_2800214_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|371708	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter. The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.	4.18149e-54
NC_008709.1\|WP_011770614.1\|2813521_2813965_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.91766e-19
NC_008709.1\|WP_041767215.1\|2796801_2798724_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	3.97285e-177
NC_008709.1\|WP_011770616.1\|2814710_2815490_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	0.000553478
NC_008709.1\|WP_083761759.1\|2793120_2793699_-\|cell-division-protein-ZapC	gnl\|CDD\|369220	pfam07126, ZapC, Cell-division protein ZapC. ZapC is one of four FtsZ-binding components of the Z ring in bacteria. Formation of the Z ring on the cytoplasmic surface of the membrane is the starting process for assembly of the cell-division apparatus. It binds directly to the Z ring, and although it is not essential for absolute cell division it contributes to it by enhancing the interactions between the FtsZ protofilaments (or polymers) which aggregate to form the ring conformation in the Z ring.	9.67635e-66
NC_008709.1\|WP_011770600.1\|2793736_2794747_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_008709.1\|WP_011770617.1\|2815706_2816603_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	9.62338e-64
NC_008709.1\|WP_011770615.1\|2814102_2814525_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.04213e-70
NC_008709.1\|WP_011770618.1\|2817085_2818483_-\|DUF3494-domain-containing-protein	gnl\|CDD\|378786	pfam11999, DUF3494, Protein of unknown function (DUF3494). This family of proteins is functionally uncharacterized. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 243 to 678 amino acids in length. This protein has a single completely conserved residue G that may be functionally important.	4.63813e-11

>NC_008709.1|WP_041766449.1|2803658_2804021_-|hypothetical-protein
MSYQMMVLTHIIKKKSYCTGNTQFLKATSKDELISIIVNPNFHGNATTTFNTSFRPLFNINGDPNELGFVLFEGNCRIKVQENARKYATGRVCNHRTRAQGNPKKQYSLESKLKPKIITV
>NC_008709.1|WP_011770607.1|2801833_2803348_-|hypothetical-protein
MNNTDDIVKVLRYIEENMRVTDQTSIEYLDAQGNIDRLSIRQNHIIFGRRGSGKSLLLKSLGQRSEFSCISVNMEDFKDISFPNSIIQVQKSILRQLLPIVKKVHGKYALAYWMKALPLKRKLTKQIKTLDEKLIDPDEYDKSFKETKAGKVFGKGKGKVGGSGFESGSEASEEIETSKQIKIDKLDILKNKLTDIKELFSEVAAFIGKDIYLILDDFYFIRKDEQPYFLDFFHRVSKNTPLYLKVATIKHRSKLYVQDSSYIGVEIPHDAQPLNLDYSLQDFDALVTFMKKLLKHINEKVGVEIDYSKLITDNAFRFLCLASGGVPRDFFSLLISLGPSLGGGKSISKPNVIEKAIESVANKMEHFKKDAANEDVLLEHYLWIIKGDIIDNKKWNAFLLSNSEVQNHPQINQAIKELVDLRFLHLVNPNISASNSDGTRYSAYMLDIGLFPNANPRGFHQVEPGQKDEHHRVDKIRSAPKLDLGSFSQRICELKAPLELELTD
>NC_008709.1|WP_083761791.1|2800816_2801434_-|nucleotide-binding-protein
MSILRGEKSLGEKRNDFTVKVEDKCHRLESIIERLELIPESRELISVNSIQNDKSKNVNYSQIFIVHGHDDSAKLEVARFIEKLGFEPIIIHEQPNASKTIIEKIEAFSNVGFGVVIYSPCDIGGKNKDNPELAGRARQNVVFEHGFLIGKLGRSKVCPLVTGNVETPNDISGIVYTSMDTSNWQIALAKELRTADYAVDMNDVI
>NC_008709.1|WP_041766447.1|2800501_2800690_-|hypothetical-protein
MERQICQEKFERWSLRQRPERRRAGRPVSFTAVQVYERVSSACPLISLGSALHMDVLSEPVR
>NC_008709.1|WP_011770604.1|2799815_2800214_+|nitrous-oxide-stimulated-promoter-family-protein
MSEHTLPGKLGLEFKTIKAMVAIYCQKHHSSTALMSGQKTLCACYAEFILYANEKLDRCPYGQNKPTCNKCPIHCYKTAQREQARIIMRYAGPRMLLSHPILAIKHLLAEQRPVPESIPDKASNRHIRNADK
>NC_008709.1|WP_041767215.1|2796801_2798724_-|ATP-dependent-DNA-helicase
MISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQNLVVEAETGTGKTFAYLAPALLTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERLARFMLETKQREKALQIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNNDNCLGRECPSFDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFDEAHQLPDIASLYFGESLSSRQLIELAKEIEFVYRTELREAKQMSKAADQLRLSALDFRMAFAIDKGTGSWRDKSKERVMQLHVDRILQVMDFLKEVILERLGKSDVLDHCFERLTQFTLLFKKLNSVNESGFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQESQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIRASKGRCFFLCTSHAMMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINHGNALLVATSSFWEGVDVRGQVLSCVIIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRAEKDKGVLIVCDTRLVTRKYGNLFLNSLPCMPRTRSLDNAIDFLKTID
>NC_008709.1|WP_011770602.1|2795987_2796701_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MFKKLNVLCVDTSTEACSVAVLCQTAAGQVINDQFMLAPREHTTKILPTVEQVLQSAGVNLSDMDFIAYGRGPGSFTGVRIGISIAQGLAFGSEKNMVGVSTLQAMAQQAFKMKGAQDVYAAIDARMGEVYFGHYQLDKKLMVLVNDEVVIKPADLIARQENIAENAVLVGSGWAAYPELSEHFNAPEETEIEFPSARFMLDEVINCIDKSLDILPELATPVYLRDKVTWKKLPGRE
>NC_008709.1|WP_011770601.1|2795147_2795936_-|hypothetical-protein
MLRVIFCFFLLLTSLSCISQAYRINLTCQQAEKLGQLIWKNEGQQKQENLTTWNKNEDFPSLGLGHFIWYPGVEKGPFKEQFPELLQFFKNSGVVLPAWLARSEQAPWKSREQFYREFDQPQLTELRLLLNKHSDLQVQFIIKRLETGIPLILLNSNKTEMKVIHYQLARLTALPEGIFALLDYINFKGEGVLSKEAYQGQGWGLKQVLLTMPLKYDDPLRAFALSADEVLTRRVKNAPSNELHWLKGWRVRVHGYQSIMVN
>NC_008709.1|WP_011770600.1|2793736_2794747_-|quinone-dependent-dihydroorotate-dehydrogenase
MFYQIMRSFLFMLNPEKAHDFSIKQLKLTQGTALDFIYRQRVQQRPVQVMGLTFPNSVGLAAGLDKNGECIDAFGAMGFGHIEVGTVTPVAQPGNESPRMFRVLESDGIINRMGFNNEGVENLIKNVKESNFKGVIGINIGKNFSTPVEQGKEDYLLCMDKVYPYADYIAVNISSPNTPGLRSLQYGDALNELLAALKIRQAELQVKYNKYVPIALKIAPDLSDQEIVSIAKSLLEYKIDGLIATNTTLDRDMVKGMSHAGEAGGLSGRPLQNKSTAVIAKFAAQLKGEIPIIGVGGIDNVIAAKEKIQAGASLVQIYSGFIYHGPQLVKNIVNNI
>NC_008709.1|WP_083761759.1|2793120_2793699_-|cell-division-protein-ZapC
MKVTLCKKTHRIIDFRPQANWYWLFDHNRAILTLNMGDRVIDIVYKPEMLILKFDQPVFFTIEDVANYMDLFEGPALGDYWPALRSQIILHALVANQFHKPIMPKNWLFESSVGEQPRVHKGDHIILKSSAIKEAKKYFVLDNDENFILCMLIEKSHGLTFNRNFVQFQIVKVTYDKIFATKADCNTLSQYV
>NC_008709.1|WP_011770608.1|2804613_2805594_-|hypothetical-protein
MMARPRQTIVSLDDTPYYHCCSRVVRKAFLCGIDNTTGENYEHRREWVDSRIIELATIFAIDICAYAVMSNHLHIVLKVNADKANSWSDKAVLVQWHKGFKGTLLTQKFVKGEDLHGLELETVLNCITEYRHRLIDISWFMRSLSEPIARQANKEDNCTGRFWEGRFKSQALLDEAAILACMAYVDLNPIRAKMATTLETSDYTSIQRRIHSAIKGEQPAELLPFVGDERLNIPDGLMFSVMDYIVLVEDTGRIIREDKRGAISSSSQDILNRLNIPAENWLKITTEFGHLFKGAVGALPALTEYCEHLDRKRRHGAANCQRWLCA
>NC_008709.1|WP_011770609.1|2805862_2808262_-|EAL-domain-containing-protein
MTANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAKGIDIPVIFNAVRRNVDAESYTECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCADGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEAIHQQIADSAKNLTVWHQQYRVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIGDAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEYWVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDLDQFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYHVGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMALDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDRDFHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFVKDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAWKNITNTRLSGEDQ
>NC_008709.1|WP_011770610.1|2808350_2809163_-|alpha/beta-hydrolase
MNIINRNNVRVCGKGAKTIVFAHGYGCDQSMWRRVSPSFEDEYRVVLFDYVGVGLSNADAYDPVRYSSLAGYAKDIVEIFTALDLQDAILVGHSVSSMISLLAAIKIPHRISKLIMICPTPCYLNDRPDYIGGFEQADIEGLLDIIDRNQPGWAAHLAGIVVNNPDQPELAQELEVNFCAMDPAIAKRFAKATFLADNRSDLVGFDKPCLILQCQEDLVAPNVVGDYLHQHLLNSHLQQMKATGHCPHMSHPLETIELIKKYLASNVKQN
>NC_008709.1|WP_011770612.1|2811052_2811340_+|hypothetical-protein
MNTLVETRLQQHNPLVHCELMQVASHVQRFNGECIINTLMMDGYDYPFKYGRKNKCRNLKGKQVDLSYYPSIEVIADFEMNIMKVVQIKVIAAKD
>NC_008709.1|WP_011770613.1|2811808_2813392_-|FMN-binding-glutamate-synthase-family-protein
MTMRQAFVKFSLVSVILVAALSLLSHIWLWAFVVLIPVIMIGFYDMFQHKHSICRLYPVFGRLRYLFESIRPEIQQYFVESDTSGAPIPREFRSLIYQRSKGDRDTRPFGTIFDVNRAGYEWVNHSMQPKHLLDLDPRVKFGGPDCLKPYMASPLNISAMSYGALSKNAIMALNRGAKIGGFSHNTGEGSISPYHLEHGGDIVWQLGTGYFGCRDNDGRFNPETFTENATKHVVKMIEIKLSQGAKPGHGGILPAAKLTEEIAAIRHVPMGQDVVSPPSHSAFSTPVELLNFVKKLRDLSGGKPIGFKFCVGRQDEFIAICKAMIETGISPDFITVDGGEGGTGAAPTEMTNSVGTPIRDGLTFVNNALIGFGLRKHIRIIASGKMFTAFHILRAIALGADTVNSARGMMMSLGCIQARTCNTDNCPTGIATQNPSRNKAIVVTNKAQRVANFQRETVKSLVELVGAAGLKGIHELEPKHINRRVQGTDVKNYAQLYPTIEENTLLDEIQIPESWRYDMQEAKAASW
>NC_008709.1|WP_011770614.1|2813521_2813965_-|MarR-family-transcriptional-regulator
MTKQHESSNFTLEKQICFSLYSASNAMGRAYRPLLKKLDLTYLQYIVMMVLWQYSTMNVKALGGKVHLDSGTLTPLLKRLESKGLIIRSRSQQDERVRIISLSDEGQTMRQQAEQVPNAMLCKTKMTIDELTKLKQGCDLLLANLNN
>NC_008709.1|WP_011770615.1|2814102_2814525_+|organic-hydroperoxide-resistance-protein
MTTLYTTSATANAGRNGQVTTDDKKLDLALSYPKEMGGTGDATNPEQLFAAGYSACFSNALLHVAHETKIAIKSAPTTATVGIGPNENNGFALTVALSIELELEQTAAIELVQKAHQICPYSNAVRGNIDVKLIVNGVTL
>NC_008709.1|WP_011770616.1|2814710_2815490_-|2OG-Fe(II)-oxygenase
MLLSEVLNTSKYHLESNALVESCKAKLEREGAIVLPDFLTKQAIRAIVDEGKEKQSLAWYTGNTHNVYLTDIDPDYALDHVKNKQINSSKGCITDDQISQHSPLRVIYDAALFRTFLTQVLDIKALHQYADPLSSINLHYASAGQELGWHFDNSSFAITLLIQKPEQGGSFEYLNNMRDADRGEMNFEGVEGVLAGKKEVKSLTIEPGSLVLFRGRNAIHRVTPTIGDTTRMLVVLAYNSEPNVALSESARMTFFGRLA
>NC_008709.1|WP_011770617.1|2815706_2816603_+|LysR-family-transcriptional-regulator
MQKLPVLSHLRTFVTAAKTGSFANTAIKLCITPAAVSQHIRQLENQLKSILFERSKRGVCLTQAGIQYRVFAEKALDNLRQGQHCLNQLKNQQYFTIRAFPSVASKWLMPKIIQFMDLNPDLEIRLEASHAKVDFDNSDTDACISFGHQDYPNEEAVLLFNDSVSLVASPLLLQQLPHGHHLDTLLQQPLIQIDWGHFNRFLPDWENWLKLAGYKDISFKKGPQFNLSSLAIEAAVQGKGLLLGQESLIQDELKSGKLIQVCDISLPLERPYYLVYPKRTLANPQAINFFKQLIAKTG
>NC_008709.1|WP_011770618.1|2817085_2818483_-|DUF3494-domain-containing-protein
MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDLAAKAAIAIGAGKSQTQEIYAGAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITLGAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGKIRNFDDMVLATKAIEHAQRALTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVINLSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVSCGNIYAGGAVSVGSIGTVGDGSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSVWTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGSMMTKSSNLRGDELNMMYIYRGTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_008709_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_17

2952439-2952560

Orphan

Consensus_repeat	Method
AGCTGTCAGCCGTCAGCCCGCCGCTCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_17

>merge|NC_008709|17|2952439-2952560|CRISPRCasFinder
AGCTGTTAGCTGTCAGCCGTCAGCCCGCCGCTCAAAGCCCGCCTTAAAGCTCTAAAGCCCGAACGCTTGAAGGCTTGAAGCTCTATGCTCTAAAGCTGTCAGCCATCAGCCCGCCGCTCAAA

>NC_008709|17|17|2952439-2952560|CRISPRCasFinder
AGCTGTTAGCTGTCAGCCGTCAGCCCGCC	GCTCAAAGCCCGCCTTAAAGCTCTAAAGCCCGAACGCTTGAAGGCTTGAAGCTCTATGCTCTAA
AGCTGTCAGCCATCAGCCCGCCGCTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770697.1\|2946771_2947491_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|182974
NC_008709.1\|WP_011770694.1\|2942951_2943734_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368580
NC_008709.1\|WP_011770696.1\|2945663_2946536_+\|MYG1-family-protein	unknown	unknown	gnl\|CDD\|377098
NC_008709.1\|WP_041767246.1\|2941096_2942281_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NC_008709.1\|WP_011770709.1\|2962283_2964086_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NC_008709.1\|WP_011770695.1\|2944356_2945355_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NC_008709.1\|WP_011770700.1\|2949733_2951140_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NC_008709.1\|WP_011770710.1\|2964124_2965759_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
NC_008709.1\|WP_157035451.1\|2948385_2949675_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NC_008709.1\|WP_011770711.1\|2965767_2966793_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_008709.1\|WP_083761763.1\|2953158_2955078_-\|EAL-and-GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_008709.1\|WP_011770698.1\|2947517_2948345_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237645
NC_008709.1\|WP_041766471.1\|2952743_2953112_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770704.1\|2955355_2955553_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770701.1\|2951223_2952276_-\|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270372
NC_008709.1\|WP_011770692.1\|2938262_2939771_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NC_008709.1\|WP_011770708.1\|2961234_2962128_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_008709.1\|WP_041766473.1\|2958259_2960389_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|274734
NC_008709.1\|WP_011770705.1\|2956770_2958276_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|182781
NC_008709.1\|WP_041766474.1\|2960473_2960803_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770697.1\|2946771_2947491_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	1.50556e-88
NC_008709.1\|WP_011770694.1\|2942951_2943734_-\|hypothetical-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	1.64761e-11
NC_008709.1\|WP_011770696.1\|2945663_2946536_+\|MYG1-family-protein	gnl\|CDD\|377098	pfam03690, UPF0160, Uncharacterized protein family (UPF0160). This family of proteins contains a large number of metal binding residues. The patterns are suggestive of a phosphoesterase function. The conserved DHH motif may mean this family is related to pfam01368.	4.54879e-107
NC_008709.1\|WP_041767246.1\|2941096_2942281_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NC_008709.1\|WP_011770709.1\|2962283_2964086_+\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NC_008709.1\|WP_011770695.1\|2944356_2945355_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	3.612e-149
NC_008709.1\|WP_011770700.1\|2949733_2951140_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	7.19103e-91
NC_008709.1\|WP_011770710.1\|2964124_2965759_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.47507e-178
NC_008709.1\|WP_157035451.1\|2948385_2949675_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	5.30866e-84
NC_008709.1\|WP_011770711.1\|2965767_2966793_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.72281e-104
NC_008709.1\|WP_083761763.1\|2953158_2955078_-\|EAL-and-GGDEF-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	8.76955e-64
NC_008709.1\|WP_011770698.1\|2947517_2948345_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237645	PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional.	0
NC_008709.1\|WP_041766473.1\|2958259_2960389_-\|polyphosphate-kinase-1	gnl\|CDD\|274734	TIGR03705, poly_P_kin, polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. [Central intermediary metabolism, Phosphorus compounds].	0
NC_008709.1\|WP_011770701.1\|2951223_2952276_-\|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.66296e-94
NC_008709.1\|WP_011770692.1\|2938262_2939771_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NC_008709.1\|WP_011770708.1\|2961234_2962128_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.36719e-39
NC_008709.1\|WP_011770705.1\|2956770_2958276_-\|exopolyphosphatase	gnl\|CDD\|182781	PRK10854, PRK10854, exopolyphosphatase; Provisional.	0

>NC_008709.1|WP_011770701.1|2951223_2952276_-|PstS-family-phosphate-ABC-transporter-substrate-binding-protein
MKKLVLNTVALTFTVSLLASAAATAASRDMISVVGSSTVYPFSTVVAERFGKKTQFNTPKIESTGTGGGMKLFCAGNGIDTPDMSNASRRMKKSEYEMCVENGVTDITEVLIGYDGIVVANSNAAPQMKLSRKDLFLALAKEVPALDGSETLIKNPYKTWKDVNPSLPATKIEVLGPPPTSGTRDAFAELVMEGGCKQYPWIKAIKKTDKSAYKTICHSVREDHAYIEAGENDNLIIQKIDANPDAMGIFGFSFLDQNTDKIQGSFIDGTAPSFDAIADGSYPVSRPLFFYVKNSHVDKVPGIAEYLAEFTSESAMGQMGYLTDKGLIPLGDEKFAEVSADVKSYKALQL
>NC_008709.1|WP_011770700.1|2949733_2951140_-|phosphate-ABC-transporter-permease-subunit-PstC
MTSTALILIITLLTLGSYWYGMQRSIKVAGGVSQIKNMHSLPQQFGLLTAFCCGLPALFLLLLWGIVEPIIIESLLVNSLGKSVQALSTADLSLYLNDIRIMAGSALSDLSNLSDLSNEVVKQQAALYLRVLKDQASMLKAGLILITALASVMFIVSRFKLSFSARALSESVTKFLFLSCSIVAIFTTLGILMSVLFESLKFFQSVSTLDFLFGTTWSPQIAMRSEQVGSSGAFGAVPLFAGTMLISFIAMTIAAPVGLLTAIYLSQYASPTLRTVAKPMLEILAGIPTVVYGFFAALTVAPFIRDTGEALGLNVASESALAAGIVMGVMIIPFVSSLSDDALNAVPQALKEGSLAMGATESETIKNVLLPAALPGIIGAMLLAVSRAIGETMIVVMAAGMAANLTANPLAAVTTVTVQIVTLLTGDQEFDSPKTLAAFALGLMLFVTTLLLNVIALKVVRKYREQYD
>NC_008709.1|WP_157035451.1|2948385_2949675_-|phosphate-ABC-transporter-permease-PstA
MHSNTDRIKQSLKKRNSKEKRFRLWGRLAISFGFLMVVILFADIGTKAYPAFFQHWIKVDIEFNRQWLNIEPSDSAVQPNMQAFKQANYSTTVKKSLYQMFPQVTTRGDKRDLMRLLSYSAEFKIEDLVTANPDLLGQTVSLWLLADDDVDSYFKSGVTVGQSSGRINDKQAMWLKQLFESGAVEKRFNTLFFTNSDSREPELAGIRGALSGTILTMIIVLLISFPIGVSAALYLEEFAPKNRWTDIIEVNINNLAAVPSIVFGLLGLAVLINIFGLPRSASLVGGIVLSLMTLPTIIIASRASIKAVPNSIREAAIGLGASDMQVALGHVLPMAMPGILTGTIIGLAQALGETAPLLMIGMVAFIVDVPVNFTDAATVMPVQIYLWADSPESAFLAKTSAAILVLLAFLLIMNFSATLLRSKFEKKGQ
>NC_008709.1|WP_011770698.1|2947517_2948345_-|phosphate-ABC-transporter-ATP-binding-protein
MTIKNKSLTDGMEIEHTVGNVFADDAKMSMRNVDVFYGDKQAIKNVSIDLARNQVTALIGPSGCGKSTFLRCLNRMNDTIDICKIKGSLLLDGEDIYHKKMDPVLLRARVGMVFQKPNPFPKSIYDNVAYGPRIHGLAASKDDLDEIVINSLQKAGLYKEVKDRLSASGTGLSGGQQQRLCIARTIAVSPEIILMDEPASALDPIATAIIEELIDELKEKYTIAIVTHSMQQAARISQTTAYFHMGSLVEVGSTDHIFTNPSHKLTENYITGRFG
>NC_008709.1|WP_011770697.1|2946771_2947491_-|phosphate-signaling-complex-protein-PhoU
MRKDLNITGHISKRYNDELEQIRYLLIEMGELVIRQVEDGLNCLLTSDTELAQQVIDNDKKINQFEIKIDEACTHIIATRQPAASDLRLIICIIKTITDIERIGDEATKLGRNALKIINSEQNPRQFNELKHLGETVIANLHQAMKAYAALDIETALQVIEQDEQINIEFDNISRLLITKMMEDPREIKNCLRITWCARAFERIGDHGKNICEYVVFLVEGKDVRHISIEQIKQTLKDF
>NC_008709.1|WP_011770696.1|2945663_2946536_+|MYG1-family-protein
MNNITIATHNGNFHADDVFSIAALKSIFPTFKLIRTRDLALIGQADIVLDVGGEYDPDAGRFDHHQRGGAGERENGIPYSSFGLIWKKYGLEICQGNQDVANALDAGLVSNIDAIDCGHVEGVSKGISLSQTISMFNPTWQEESHFDACFDDAVDFAVRVLARFIASANGGISAKVIVAGAIENALDPRVIVLEKYTPWKRTVHALSKEALYMVFPSQTGEWRIQTVPVEPGSFEDRKSLPKEWAGLSGKALVDVTGIDDAMFCHNGLFIAGAESFSSVMKMAAMALQED
>NC_008709.1|WP_011770695.1|2944356_2945355_-|NADP-dependent-oxidoreductase
MATFTAINLIKRPTGGPLDSSLFEVVKKTIPTVEAGQFLVKQQHMSLDPAMFGWMSADMNSYIPPVALGDVMRSSGIGEVTMSHHPDFEVGDRVTGMMGWQEYFLSDGQGVNKVTAPLPNENILSVFALPGLTAVQGLFNVGKPKKGETLIVTGAAGSVGSIVGQLAKAEGLRVIGVVGNQEKADWIVNELGFDAAINYKSDDLDAQLAKAAPDGIDLFFENTGGPIQHFIFDRINAHGRVVVCGLISAYDADVPDLGPSWLNIIKRRITIQGFTMPDHFHQVPELLEKLTPYVMAGQIKHRSHVLQGLESAIEGLNLFSTGENKGKLIVQL
>NC_008709.1|WP_011770694.1|2942951_2943734_-|hypothetical-protein
MLANPSQLKTTYDAQGYFVIRDYFTASEISSLRKVILKFHTLWKDDNEIFYREEAFNSSLITGSQYLGYDNRVKLFNFISSKKIMNIVESVMAADPAFMNTQLFFDPVSPEQKDFWHRDCQYDYDIEDQKKVIYNPQVLHLRVPLFDEPGIELVPGTHKRWDSDEEFNVREEIKGRVSSDNLSTGQEIELAAGDLLVFSADMIHRGRYGLDRLALDILVFDSAGDYADYVDDDCLPDTSMLDKIADPRLFLNTINLKSKG
>NC_008709.1|WP_041767246.1|2941096_2942281_-|acetyl-CoA-C-acetyltransferase
MKDVVIVSAKRTAIGSYLGVFNNVSPIDLAVTAVKSALEAANVTPQQVDNLIFGHVFSAGLGQNPARQIAKFAGIPDQATANVVSMVCGSGLKAVMDAVLQIQTGESEIVVAGGTESMSNAVYTLDSHRTGAKTGNSQLTDIVLKDGLIDAFSGFHMGITAENLAKKYQISREEQDAYALQSQQRAETAITSGRFKNEIAAHIISTRGGDTIVDSDEYPRFGIPLKVISKARPAFKKDGTVTAANASGLNDGAAAVVLMSKEKALALGLTPMVTIRAQGAAGVDPDIMGYGPVPATQKALKKAGLTVQDLNLVEANEAFASQCLSVIKGLGLDPAITNVNGGAISLGHPVGASGARILVTLLHELTKRKERYGLATLCIGGGQGVALLVENENR
>NC_008709.1|WP_011770692.1|2938262_2939771_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVQNFINGQISESNSQRFSPVFNPATGKQTRQVVLSNEAETEKAITAADSAFPAWAKMPPLKRARVMFAFKALLETNMDRLARLISNEHGKVYSDAVGEITRGLEVVEYACGIPHLQKGEHSANVGTGVDSHSLMQPLGVCVGITPFNFPAMVPMWMFPIAIATGNTFVLKPSEKDPSFALELAALLKQAGLPDGVFNVVNGDKQAVDVLLTDPRVQAASFVGSTPIAEYIYSTASAHGKRCQALGGAKNHCLLMPDADLDMAANAIMGAAYGAAGERCMALSVVVAVGDETGDQLVEKLQAQIKEMRVGPGIVDGPENDMGPVVTAQHKAKICDYITAGEQQGASLLVDGRHLTVDGHEAGYFVGPTLFDNVLPDMSIYKEEIFGPVLVVVRVPNYQTGLELINNHEFGNGTAIFTRDGESARQFSEDVLAGMVGINVPIPVPMAFHSFGGWKRSVFGPLNVHGSDGVRFYTRMKTVTSRWPASVRLEEHASSFVMPTM
>NC_008709.1|WP_041766471.1|2952743_2953112_+|hypothetical-protein
MIIKETDIVNVLTTLECRTNFSIKKITEYMLPKLKEAFYLHIENQSPHIIIRPVFEVFASELAAIKGVTKREAYFHSAEMTRFPKRVHKGINEIHYGISFKFENSKAVTLFIKKLITIIGGG
>NC_008709.1|WP_083761763.1|2953158_2955078_-|EAL-and-GGDEF-domain-containing-protein
MCYKKHEMKAIFICIRMGIIKPQNYSVSISLTTSCDEENMPNLTILSLDLIIQDKNLSVFFQPIVENIERNIFGYEALIRGPFNSQLYSPIALFAAAKDQSRLVELELLCRELSILQFKKLNLQGKLFLNASPETLFQPNFRSGQTLKLLKKIDLDPSRVVIELTEHSPLENYEVIRDALKHYKEMGFEIAMDDLGSGYSGLRAWYELRPDYVKIDRHFMCDIDSDKVKQQFVLSIKNIAQELGCKVIAEGVETANEFRFIEKIGLRFCQGYYFKRPAPLPVRRINNNLFSERRLTAQSKNRLISSKMVGELLQPIDAISTATTIESCATLFKQKPDLDSIPVLENNKPIGLIHRNNLTNLFFSAYGRELSGRKTIASLVDRQVLILEHDLPVEQASILISDQAGRRKILEFIIVNKGEYQGIGSIIDLLKEITHLQINNARYANPLTLLPGNVPISKNLDQRLKEQSPFTICYVDLDHFKPYNDCYGYEKGDQIILGVADILRDIVTDRDDFIGHIGGDDFIVILSSDHWQIQCEKILANFSEWVIHSYSPEDQERGGIASEDRTGAKQFYPLLSLSIGCVNLSPSICNSHNDVAVLASYAKSKAKKIKGNSLYLYDSKTTANALPEKKYLTELCHSS
>NC_008709.1|WP_011770704.1|2955355_2955553_+|hypothetical-protein
MTTKNKHKKAGKKDSQLVIRINGEERDRFVSLCEELDTSAAREIRKFIRGFVEEHAEEPVEEHAK
>NC_008709.1|WP_011770705.1|2956770_2958276_-|exopolyphosphatase
MSQSVEQKVRNIAAIDLGSNSFHMVVAKVVGQDLQMVSRHKQRVRLASGLDSEMNLSDAAIERGLLCLVMFAERLQGFEGDNVRIVATHALRQANNAPVFIQRAREVLPFPIEIISGEEEARLIYLGVAHTQVESDSKLVVDIGGGSTEMIIGQGFEVDLLNSQQMGCVSFTNQFFNNGKLSKNNFAKATLAAEQRLKPLVKQYRKKGWSTAFGSSGTIKAIKEVLIGFGYHDGLITHKRLQELIDALCTFDSIDAIELSGLSKERKPVFAAGVVILNALFQAFQIIEMHFSDGALREGVLYEMEARFARSDIRMRTTENLANKHNVELNHAVCVKHQATELFSQIRQTLGIKKHSELLSLLQWAALLHEVGLNISLPGFHRHSAYILQHTNMPGFNSEQQLVLATLARFQCKSLKLNEMPEFNLFDKNHLLALIKILRLAIILNGQRNDQLLPEILLTVEGKLWVLDCVNQLWLEDNKSLYADLLAEQERWLSAGWQLKF
>NC_008709.1|WP_041766473.1|2958259_2960389_-|polyphosphate-kinase-1
MSTEKFYIEKELSWLSFNERVLQEAADKSVPLIERIRFLGIFSNNLDEFYKVRFADVKRRILIDQEHAWNEPSLNTHGLKFNKQLLSNMQTKVFQLNERFDVLYNELIREMARRRIFLVSELQLDEAQQNWIRKYFKKEVMPHITPLLLNDDIDLLQFLNDTDAYIVVELKKDNHSQYALLEIPTGYLPRFVRVPEQKGRGRKTIILLDNIVRYCLDELFRGFFDYDELNGYAMKMTRDAEYDLSHEVEYSVLDKMSEGVSQRLTAMAVRFVYEREMPQAMLDFLCEKLKISNYDSLLPGGRYYNFKDFISFPNIGPNYLENKSLTPIECADFEGYVNYFDAIRAKDILVYYPYHTFSHIAELVRQASFDPKVLSIKINIYRVAKHSQLMNSLIDAVHNGKNVTVVVELQARFDEEANIEWAKVLTEAGVHVVFGSSGLKIHSKLLLISRREKEAVIYYAHIGTGNFHEKTARIYTDFSLLTAVQEIALEVRKVFSYIENPYRPVRFNHLIVSPRNSRKRIYQVIDQEIANAALGKNAGLTLKVNNLVDKGLINKLYNASRAGVQIQMVIRGMCSLVPGIKDVSENIKIISIIDRFLEHSRVLITHNDGDPQVYISSADWMTRNIDNRIEVTVPIRDPRLKQRIIDIVNIHFTDTVKARLMDQNMSNDYVPRGNRKKIRSQLDIYEYLKNTEKQTRKQQKQSRDNVAIR
>NC_008709.1|WP_041766474.1|2960473_2960803_-|hypothetical-protein
MHPINNTKRINKVIIFTIEVHPDGFAGVNFFEASDYKLNAFGISAMSVTYWGGKLQWNRRYVWVVRSLLTSAPYSTAIRRAQPAGCDHGSLYCKTVLYKKSGPDKSVMT
>NC_008709.1|WP_011770708.1|2961234_2962128_-|LysR-family-transcriptional-regulator
MKQLIDFQYFQAVAKAGSIRKAADKLSITSTALNRRILTMEDELGEKLFERQANGVRLSAAGELFLHHVQKQLADLQRVKSQISDLSGVRRGHVNIACSQALLTSFFPQQIARFRHQHPAVTFSLYVRDRQAAESTLLDNSVDLAMVFEPVHMNELQILISKEQQLYAIMPSGHPLAEKSDVKLSECMAYPLALPTSEYGVRHILDFKANRTMLNMQPTVESDSFEFLRNYVLNEGCITFQIEIGLPQIMEDLGLIARPISKADMAAGSMYLIQKKNRTLPTAAARFAEQLIQTLSQ
>NC_008709.1|WP_011770709.1|2962283_2964086_+|allophanate-hydrolase
MLTNLPFTIDALHQAYRQGVSADQVIRESLTRLSNIADEGIYLYVASDSQLSKAVADLGPFDLTLKPLWGIPFAVKDNIDAVDMPTTAACKAFSYIARQDAYVVSLLKQAGAILIGKTNLDQFATGLVGLRTPYPAPKNAIDAKLVPGGSSSGSAVAVAHGQVCFSLGTDTAGSGRIPAALNNIVGLKPTLGSISSRGVIPACRSLDTVSILALTVENAAQVYACCRYYDQQDPFSKPYHGPAKQNIPVNFTVAVPDSESLILDEPAQKKAYEQALNYWRQKGAKLVEIDFKPFYEVSKLLYEGPWVAERLAALAPFMAKHRSALYPVTCEIIESAHKFSASDAFNAYYRLRALSRQIASILTKIDVICVPSMPGLVYKSDIEVDPIGPNSRLGTYTNFVNLLDLCAIAIPGKTRSDGYPSSITLIAQNGCDAFIHALAADYHANQGDYLGATSHKIPVPDRLTTTTNIMQMTSNHEIAIAVVGAHMTNLPLNHQLTDKGGRFLTSAQTDSHYRLYQLGNRPGLIRDDDGQIIDLEVWALPKNKIGDLIAQIPSPLSIGSITLSDKQQVKGFLCEPHGLKDSRDITHFGGWRAFCQAESL
>NC_008709.1|WP_011770710.1|2964124_2965759_+|ABC-transporter-substrate-binding-protein
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGTNRASYQVAVNMYDRLVTFNIKDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDAIFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPEQFEAVDAHTFKIKMQQASKLTLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFDKWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNIDNTLHALGMNMKFEPFKHIKVRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWPQPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTEPTALLIQENLKAIGIDAPVNKIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVDSTLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRTFSKE
>NC_008709.1|WP_011770711.1|2965767_2966793_+|ABC-transporter-permease
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLGLDRTLAYQFIAYCKNLAQGELGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPLGILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFYYLLGWAPSPIGRLDFIYLAPTHVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVKAAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDALVASDYAAIQGFVLIMAVLFVSLNLIIDILYTLFDPRMGRNE

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Crispr_ID: NC_008709_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_18

3179244-3179373

Orphan

Consensus_repeat	Method
TAAACGAACTCAGGGTTATGTCAGTGGTGAGTTCGGTTAATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_18

>merge|NC_008709|18|3179244-3179373|CRISPRCasFinder
TAAACGAACTCAGGGTTATGTCAGTGGTGAGTTCGGTTAATAACCATAAGTCATTAACCAAAAGAGATTAGTAAAGCCCTCTTTTGGTAAACGAACTCAGGGTTATGTCAGTGGTGAGTTTGGTTAATAA

>NC_008709|18|18|3179244-3179373|CRISPRCasFinder
TAAACGAACTCAGGGTTATGTCAGTGGTGAGTTCGGTTAATAA	CCATAAGTCATTAACCAAAAGAGATTAGTAAAGCCCTCTTTTGG
TAAACGAACTCAGGGTTATGTCAGTGGTGAGTTTGGTTAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011770868.1\|3177675_3178521_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|273373
NC_008709.1\|WP_011770865.1\|3174927_3175740_+\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NC_008709.1\|WP_011770864.1\|3172264_3173662_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NC_008709.1\|WP_011770877.1\|3191772_3192999_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|237556
NC_008709.1\|WP_083761770.1\|3164684_3164924_+\|transposase	unknown	unknown	gnl\|CDD\|376980
NC_008709.1\|WP_011770871.1\|3181636_3182797_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770874.1\|3186509_3187598_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NC_008709.1\|WP_011770870.1\|3179506_3181618_-\|5-histidylcysteine-sulfoxide-synthase	unknown	unknown	gnl\|CDD\|275140
NC_008709.1\|WP_011770863.1\|3169116_3170529_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_008709.1\|WP_011770867.1\|3176770_3177676_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NC_008709.1\|WP_041766497.1\|3175867_3176695_+\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NC_008709.1\|WP_011770862.1\|3165827_3169127_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011770873.1\|3184509_3186414_+\|TRAP-transporter-fused-permease-subunit	unknown	unknown	gnl\|CDD\|273983
NC_008709.1\|WP_011770876.1\|3189980_3191756_-\|sugar-phosphorylase	unknown	unknown	gnl\|CDD\|200493
NC_008709.1\|WP_041766180.1\|3188934_3189906_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_008709.1\|WP_011770872.1\|3183554_3184487_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270287
NC_008709.1\|WP_011770875.1\|3187856_3188468_+\|NAAT-family-transporter	unknown	unknown	gnl\|CDD\|170674
NC_008709.1\|WP_011770861.1\|3165213_3165816_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_083761772.1\|3188414_3188750_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178974
NC_008709.1\|WP_041766496.1\|3164905_3165091_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379385

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011770868.1\|3177675_3178521_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	3.36955e-97
NC_008709.1\|WP_011770865.1\|3174927_3175740_+\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.76613e-86
NC_008709.1\|WP_011770864.1\|3172264_3173662_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	1.38974e-110
NC_008709.1\|WP_011770877.1\|3191772_3192999_-\|glycosyl-transferase	gnl\|CDD\|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	1.11002e-17
NC_008709.1\|WP_083761770.1\|3164684_3164924_+\|transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.3835e-28
NC_008709.1\|WP_011770874.1\|3186509_3187598_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NC_008709.1\|WP_011770870.1\|3179506_3181618_-\|5-histidylcysteine-sulfoxide-synthase	gnl\|CDD\|275140	TIGR04344, generic_methyltransferase, 5-histidylcysteine sulfoxide synthase. Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes the 5-histidylcysteine sulfoxide synthase domain, a homolog of the ergothioneine biosynthesis protein EgtB. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NC_008709.1\|WP_011770863.1\|3169116_3170529_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.22353e-12
NC_008709.1\|WP_011770867.1\|3176770_3177676_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	2.40111e-85
NC_008709.1\|WP_041766497.1\|3175867_3176695_+\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.62823e-85
NC_008709.1\|WP_011770873.1\|3184509_3186414_+\|TRAP-transporter-fused-permease-subunit	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	1.49083e-165
NC_008709.1\|WP_011770876.1\|3189980_3191756_-\|sugar-phosphorylase	gnl\|CDD\|200493	cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha amylase catalytic domain found in sucrose phosphorylase-like proteins (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase). Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_008709.1\|WP_041766180.1\|3188934_3189906_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.91016e-98
NC_008709.1\|WP_011770872.1\|3183554_3184487_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270287	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	1.42881e-90
NC_008709.1\|WP_011770875.1\|3187856_3188468_+\|NAAT-family-transporter	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	2.57251e-54
NC_008709.1\|WP_083761772.1\|3188414_3188750_-\|hypothetical-protein	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	5.69016e-20
NC_008709.1\|WP_041766496.1\|3164905_3165091_+\|hypothetical-protein	gnl\|CDD\|379385	pfam13817, DDE_Tnp_IS66_C, IS66 C-terminal element.	8.90389e-11

>NC_008709.1|WP_011770868.1|3177675_3178521_+|phosphate-ABC-transporter-permease-PstA
MLTRKTQDKFLLAATWAAATVTILFLLWVVWHVLSNGLSFVTWEFITSSYTRIGEASGIWPMIVSTVYMVVLTLSIATPIGIMTAIYLTEYAKPGSKIVQVIRFCIESLAGIPSIVYGLFGMTFFVTTLGLGFSILAGSLTLSILILPVIIRTTEEALMAVPMSYREGGYALGSSKIYTIWRLILPSAMPGIITAIILSIGRVIGESAPVFLTAGMVTKIPESVLDSGRTLTVHLYKLTQELFSQNEWDQAYATATVLIVLVLFLNLITKLIATRYAKKSY
>NC_008709.1|WP_011770867.1|3176770_3177676_+|phosphate-ABC-transporter-permease-subunit-PstC
MNIGNKSLPQTAQSIPTKKRDWIGIFFHILFICSALVGVFSLATIVWFLFSEGLPAFRQAGVLDLVFGDLWLPPALFGIFPMIVASLASTIGAVIVGVPVALFTAVFLAELAPQWLANIVRPAVELLAGIPSVVYGFFGLVIIVPAIEVIFNIPAGNTILAGIIVLAIMILPTVITISETSLRALPPVYKEGALALGASNIYSIFKVLIPAAKSGILTAIALGVARALGETMAIIMVMGNAPAMPGSLLDPARTLTANIAMEMSYATGIHASALYATGIVLLVFIVILNAVILYINKKRAY
>NC_008709.1|WP_041766497.1|3175867_3176695_+|phosphate-ABC-transporter-substrate-binding-protein
MKKVIGLLVAIVLSPIAFASSETTVTIAGSTSVSNVMEVLGETYQKKTGIDVEVQGMGSSAGIVAARNGTTMLGMSSRELTIDELTDVDTMVIAHDGIAIVINKSNPVENLTKEEIKKIYRQEITNWKEVGGEDKPIIAVTRDVSSGTREEFEKILGLKRNVNNIEVSDISPRTLVGNGNGMVKTMVANNIYALAYISLGSVDHELLVKALSVDGIKATNENVFSGEYKLARSFIVLYKKNVAQPALDFVNYIMSDEGQKIIDDQGYISIEQSHN
>NC_008709.1|WP_011770865.1|3174927_3175740_+|phosphate-ABC-transporter-substrate-binding-protein
MKKVIGLAAAIGLMASSLTYANTTITVSGSTSVTNVMEVIAETYSKETGIDVEVQGTGSSAGVRAANDGTSMIGMASREVARKEVTADTDLIVMARDGIAVTVNNSNTVKSLTKDEIAKIYRGETKNWKEVGGEDKPIVVVTRDTASGTRAAFEDILKLTRKINGMKVSTISQTAQVANGNGMVKTIVANNDFAIGFISLGSVDSSLTALAVDGVAATDPNIVANKYKIARPFVLLVKKDPAKETRDFINYILSDAGQKIVATEGYIRVN
>NC_008709.1|WP_011770864.1|3172264_3173662_+|MBL-fold-metallo-hydrolase
MAFIQSFGAAETVTGSCHLLQLKNGSNILIDCGYFQGSKEEQTFEPFGFDPKKVDILLITHAHLDHVGRIPKLIKEGFNGKVIASRASMDLAEVILMDSAKIAEEDYKIALKKAKRSGNEKQVRPPIYSIDDAKAVFDLTIQYAQYNKSIQLTPEVKVTFRNAGHILGSATVQIEFTEAGLSKSVVFSGDLGGRRDLIMPAPSFAKQADALYIESTYGDRDHRGLKETVDEFKEIIIKTLNNKGNVLIPSFAIERTQEILLLLKQMYYDKELPKCQVFLDSPMAMRATQIYTRYHSELNEPAKKLLERDGTIFDFPYLQYALKNQDSMLINNIESGCIIIAGSGMCTGGRILQHFKHRLWDARNSVIFVGYQVQDTLGRKMIDGAETIQLYHENIKVNAQIHMINGFSAHADQSDLLAWISEFEKLDKVFLIHGEPDKQAIFKQIIEEQLHKPTHIVKYAEQIYI
>NC_008709.1|WP_011770863.1|3169116_3170529_-|site-specific-integrase
MYNKISFNKIRYSSRTGKYSYALLSSAAGKIKEYSDFLEMEINKGSSQSTINAYAQDLKRLFEYLSAFDDLEDINRLLTEIRLTTPLKEIIIQYPDYLLNGVDSDYVLAKYAANKLNSRAIKPASVTRHLSSVTTFITHSASLQNELLNFKEQGLVNLDLSLEEVVLFNNVLKRRKLTDNEIQGISRNSVISNVIKGGAKYTNDKIFFSKKLRNNSDTDGSLVHKAFPFEHILDLIENAKTYRDKCFWSLLAGTGIRGSEGSQVLLQDVDIENETVRIIDPTHRKSHFSVFSQEQRNKLEFKGRDTSEVYFIEPFRSIFFDNLCNYLSLERINVTHEVLFVSNSNNNHGDPIFKPSQSVASSFKALQKELKLKKIYTLHSLRHFYGVWCLNFIPVGNSFGLSIGTVNTMMGHASEKTTRKYAVKSSFIIRAAMEVANGILECNNNNLKGLVHRNIDQQVKRIKGELNYGR
>NC_008709.1|WP_011770862.1|3165827_3169127_-|hypothetical-protein
MDASTYIALSNSFREDLKVVVDKKGKCSKNDLIAYFAYELFSIQEFDKEFFDTTLQLLSGKYNTNALEENDVREIFPFDIPRNSKGAYTKLCNVIFCLYANAAKKKIIELPIHARLGDVFTNNPHQIYTTLFSFCLPKIAMDIINISTKARYEKSKELIDLVDPIHDNRKYKTFNKTCLNFAAYLIRFGIDDIKDINVKHLNAHRIEIIKSSQGNLSLKPILGYFDEYYNTDLQDEYIKESYENMGIGVGVKHVKDELHLNYRMEQFQSAKNIAGLLINDQAKVLIFTVKPTNVDFSGIKIDVTSLNNFTPEDQNNKWLLSQNDFLHQKKFEANTKKSLKSKLAYFNAYLFGYLPAFFYKHPETCFKFPSTPEEFHKYVFVEFSTVVDSSINAKELEKIYPMSIHDFIAKVSNYKKNDVTENNNLHRDIIGTIHRYFDYITASFSSLKGFNIKANPIEKNSNIGTALKGSVKQRFDVNYWIRYRLFTKEVCKIMLLDTCNKIEFFFRDASEPYLLSQAVAVRKEVEEFTGIKVSEVEYNEKEKCIYVDREIDLFDGNILKIKKLDYGSFTQRSSWLGNRKFPIKHLDYQRQFNVLLACYAGQRASNGMWLDTDSFDAIYDGKTTEGLVPLYINTDKVNSGGMESNVPYEVFNLLRLVRKIRNFNTHTSFTEGVFYQNNPNSEFGIIKPLLQTTETNSDIVYNLSMPLQQFEACLTDSDLEFESTNFYAPLKTPGIDFLYYKRLNRTPRHATYKIINAPGEEAVSFTPIAIKSAHTIHALRTELVSIFSVLTDDKAITKMFTGQSDETQAYYTTNTPEQELAIREITDKQRADLGVNVISVKDTSISFDEIAKSVVEKTFSKQFGGISNFAPSGQTSGIEEIENISVNEIALNPTHICPYNNICPSAIVREIGEKNCHVCYKAIVVKKHRPAIAATIRMIVDEIKELYIKIKRDGILSSDLVFIQHEILQKAKRASAWKVRTDFLRNMDITGDPNHQFKEVIPNSIKARLLARLKEVDGSPMLQSNLLIQMASRLSRRLMTNMSKMDISIDDLEHGLELNPIKYTLKNLEMLAELEGKTVLELMENTRITEDKIGLELFE
>NC_008709.1|WP_011770861.1|3165213_3165816_-|hypothetical-protein
MKIEKRGDYLKMSKAQLVDDRVEIIKKALKTIKKHRGERITPFSERLSEHIKSEFNENIVSTTLRTNKDYRRLVDGFLDKGAVVKDSSVRQELMIERSSVRLLKKQVATLEQELSKQLSEVSLLEDKNIRIRTQKEPVIDDSSAFSIIMKLLNTLGMDSIKITEDVVIDTASIIPKTLFTKEDCPEFFEWYLKNTKAHLI
>NC_008709.1|WP_041766496.1|3164905_3165091_+|hypothetical-protein
MFAQSVKGAQASAVLYSIVMTCRANDINPYFYFQKLFEELPNRVEGADLSDLLPWHAQFKP
>NC_008709.1|WP_083761770.1|3164684_3164924_+|transposase
MRKIESVPILDKFKIWLDKTSQTLLPKSYLGTAVSYMLNYWQALTRYVENGELSIDNNVTDRDIRPFTTGRKTGCLHNQ
>NC_008709.1|WP_011770870.1|3179506_3181618_-|5-histidylcysteine-sulfoxide-synthase
MTIKQLKTPLLTGTSVAQKRAELKQYYANTVHTYESLFSLINNDDAYYLRPEPLRHPLIFYFGHTATFYVNKLMLGKFIDKRINQKLEAICAVGVDEMSWDDLNGTHYDWPKVDEIIEYRRQVFALVNDLIDNMEISLPICKGSLAWVMLMGCEHERIHLETSSVIMRMLPVKDLTSNQDWLACTSAGAAPENTLLAVEGKALTLGRADDHQTYGWDNEYGQTKVQVEPFKASKFVVSNGEFIEFIEAGGYQNKSYWSEEGQQWLAFKQAKMPRFWSEINNQYWQRNLLNEIPLPLNWPVEVNYLEAKAFCNWKNSSSEHYIRMPTEAEWYCLRDMVDSDLTNWRQAPGNINLEYFASSSPVDQFSENDFFDLLGNVWQWTESAIDGFEGFQVDPLYDDFSTPTFDGQHNLIKGGSWISTGNEAIKHARYAFRRHFFQHAGFRYIESVSETIPTIPVNQYVTDKKICTELEAHFGDNYLGLGNYSVTLARYVLKQLNNFSIAKGKLLDLGCSVGRCSFELSPYFEAVDSVDFSAQSIPYSVQLQQGKTVRYELEKEGELVDFKEINLNSAGLNANYRNIHFKQGDPSNLKASFDDYDVIIAQQVLEQNYDPLQFLRTISGSLKEGGILILASAYDFNPEIKPEKRFSGKKVNGENFTGFDAVQQALSAQFSLVASENIAKPSRHCARKFTVTNQHITLWKKLV
>NC_008709.1|WP_011770871.1|3181636_3182797_-|hypothetical-protein
MIKKIPTKSSGQDLVAKNIILMLQEYIGWLGFKPAIHFELEGCITRPQPSFTIDYQRINARLKANNIEGELVSEFWQNQWEYVSNFSQQSPLKEAQNLSAVMKYLPCWFREQGIKQTYIKPVVWAGDQGRFATGSGTIFSAQSGAVHIPNAIQINISALNTQGDNIITDAGFGEYLQQCFLETSLNCALLYLPEPEAYQRLLLKTDFGLAQELCSPTDISGGHQGSIALYKKFGKHNQDMGVTPLIYSANNEVLVTQQNWQESARIEHRLGASSLFYNPFYNVIFALLNLIDALHVYKRGSCIKLLKPEISKKQLPQSIFPSNNEQGSLCLFRQETWFADSIDNIYKFSTFNNINLPDMLHDGSGKALKAEIIKNYQQDIFSGNSL
>NC_008709.1|WP_011770872.1|3183554_3184487_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MQNVIKKGILGISLACLFSFNAIAENYTIGTGSQSGTYYPLGGMLAKIWSENIDNFDARAEVTAASVENTIKVSANKQLAGLAMGNVVLQGYQGVDPFPRKMDVSVLFALYPNVVQFIVPADSDIKSIQDLKGKRISLGAPGSGTRVSSTNILAALGINESDIDAQSLNYTATTNAIKAGQIDAGVIVGSIGVGAITELAFTHNIRILSFTPEELKTVSASNPSYQAIDVPVNSYDKVNAFVAPAVWNVLVVNKNLDTELAYKMTKIAFEHMKEINQVISVTKFTTIENMDRLKGVELHPGALKYLKENR
>NC_008709.1|WP_011770873.1|3184509_3186414_+|TRAP-transporter-fused-permease-subunit
MNTKNNMCRLITDKVLLIAAFAAISLSVFQIWQGITADLSAPVFRPIHLSWILILVFFTLPLIKSQQSSFQYLFGRSLDLLCIIAITWASYHIVSFDYGDISFLMDGLTTLDQLSGLIIVVLLLEATRRTVGLVMVVIAVMFLLYAIFGDILPSNVASKGFSIEEIVRFHIYSTNGIYGAPLAIAAGVVFIFVLFGAFLQVSGAGKFFIDASFSIAGKYRGGPAKASVIASAALGSISGSAIANTVTTGALTIPMMKKLGYKPEQAAGIEAAASTGGQIMPPVMGAGAFVMAQFTGIPYSEILLVSIAPAILYFGCTLLYVHLMACKLGLKGMEITEKISVVLKNGWHFLLPLLLITSLLLMSYSPILVGIAGCVAILVAAMCRKHSRISIPVFIQGLKEGALLALPISVACGTAGIVVGVVGQTGIGLQFTQFLMALSGGYLWSVLGLIAVAAMILGMGLPVTAAYIVLSIMAVPSLTELGVGLLAAHMIVFWLSQTSNVTPPIALAAFAAAGIANCSPMKAAVQAFKLAQGFLIIPIMMAFSGLIWMEGENTEFVISIVLTIGLIIAVAGSIEGRLLTVLPLYSRVLLLLSAFSLLAPNHFINIAGLIIILMITFVNYKHSKASGDQQVQKS
>NC_008709.1|WP_011770874.1|3186509_3187598_-|branched-chain-amino-acid-aminotransferase
MIIDIKPLELSKRGACPETYSFGADFSDHMFSQNFEQGSGWEKAEITPYHALTLDPSAAVFHYGQEIFEGLKAYRSFDGTINLFRPSENFKRFNRSAKRMAMPEIDGKFHLKALKALISLDHNWIPEQVGSSLYIRPTMIATGKKLGLGASDSYIHFIITGPAGSYFKGGFEPVSVYIADKYRRAVVGGVGEAKTGGNYAASLYVSEEVEKLGYSQVLWLDAVHGKYIEEVGAMNICFVYENKHIVTPALSGSILPGITRDSILKLAPALGFEVSEERLDIEQILADIKSGKITEAFGCGTAAVISPVGKLCWKGTDYIINNNKSGEISKQLYDELTGIQYGTRKDRFGWIEKVDPAVTVDV
>NC_008709.1|WP_011770875.1|3187856_3188468_+|NAAT-family-transporter
MESPFPILSTAILLFFILDPIGNIPLLLSILKNVDKQRHTKIIIREMLIGLFILVTFLFFGKQFLSLFHLETEAITISGGIIFFVISLKMIFPSPNGESLFTTKDSDEPLIVPIAMPMIAGPAALATLLVLAKTNSEHTGELFLSLIIAWILTAVVLLFSPYLYKLLRTKGLSALEKLMGMLLLIMSVQMFIDGIRGLIPTFY
>NC_008709.1|WP_083761772.1|3188414_3188750_-|hypothetical-protein
MVRDQIKRRGISSINVLNAMRSVPRHLYVPQKFLNEAYSDYPLPIGLNQTISQLYIVAGQICCHNGKSCKEQRFDPTLRTFPPPIKLILNHPGWLIKSRNKPANAINKHLH
>NC_008709.1|WP_041766180.1|3188934_3189906_+|IS30-family-transposase
MKTYNQLTYEQRCQIYALKKTGLSQNKIAKQLSVSHSTISRELSRNTGKRGYRIQQAQISSDKRRLAACKAIKMTTSLIELIDSRIKEKWSPEQISGRLREQQSINISHETIYQHVWSDKKSGGNLFKKLRRKGKIYQTRNKDKQAGRGFIKNRISIDERPQVVDDKSRMGDWEIDLVIGKGHSGALVTIVERKTSFTVSTRVDDKSAKTVTAATIALLKPFEDSVITITADNGKEFAYHEEMTESLKCDVYFADPYCSWQRGLNENTNGLLRQYWPKSTDFKKVSQSEVQDVIVKLNDRPRKKINYKTPAKLMAEHRVAIAA
>NC_008709.1|WP_011770876.1|3189980_3191756_-|sugar-phosphorylase
MSDFKRKAKSLKNCQKKLNQQLESIYQDIDLDVTFEELSEKLIFLMRLDKTCHAPVAAQNKWSEQDVILITYADSLLEADKKPLVTLHHFIDKYLGKSINSVHILPFFPYSSDDGFSVIDYSSVNESFGDWKDIQAIAKDRRLMSDLVINHCSSRSAWFQNFIKGEGVGHDFFYTASPDDDLSKVVRPRTSALLNEIQTGKGLQHVWCTFSHDQVDFDFRNPVVLENFVTIIRQYLDMGVRIFRLDAVAFLWKKAASECINLPETHTIIRLLRTLIEHAQPDAIIITETNIPNVQNLTYFGNANEAHAIYNFALPPLLVHTLVSGDCKHLKRWLMSMPPAQNGTCYFNFIASHDGIGLRPVEGLLSDQELNRLAVTLEGFGGKTSWRTTDQGQQKPYEINIALYDALQGTTEGEDKLGFYRFICAHSIMLGLEGIPGIYIHSLLGTRNDYEKLENTQHNRAINRHRWDYNTLKEKLSGHPDHHKNVLSELKHLINIRIKQKAFHPNATQFTLHLREQLFGFWRQSQDRAQSIFCISNVSKNTLDLSLSELNLIITESWYELITGAKIAPGQETVSLLPYQTLWISNLDMDI
>NC_008709.1|WP_011770877.1|3191772_3192999_-|glycosyl-transferase
MADFYQNGIVTTLHSLSQRSNEDLEAELLKFSAIRPMGLILPSLYSELEGKALPAIIKHLSKTKYLSEIVIGLDQADEAQYRQALKFFSKLPQQHSVLWNDGPRLQALDAKLQKLGVAPKELGKGRNVWYCMGYTLATGRSESVALHDCDILTYDRKLLARLLYPVANPQFNYEFCKGFYARVAGGKINGRVSRLLVTPLVKALKKTVGHHDYLEFIDSFLYPLAGEFSFRRDVLNDLRIPSDWGLEIGVLSEMHRNYASNRICQVDIATTYDHKHQDLSLENSEAGLSKMSVDITKAFFRKLATQGEIFSTENIRTLKATYYRIALDYVEMYHNDALMNGLTVDIHNEEKAVEMFSENIMTAGQQFLDKPMDTPFIPSWNRVVSAMPDVLEQLKEAVELDKIEFSNN

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Crispr_ID: NC_008709_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_19

3603788-3603913

Orphan

Consensus_repeat	Method
TCCCAACGACGCATCGGTTATTTGTAAGCCTTCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_19

>merge|NC_008709|19|3603788-3603913|CRISPRCasFinder
TCCCAACGACGCATCGGTTATTTGTAAGCCTTCGCTATGAGCTTTTGGTGTAACTTTTATTGTTGGTATTCCGCCCTGACAGCGTGTTACTCCCAACGACGCATCAGTTATTTGTAAGCCTTCGCT

>NC_008709|19|19|3603788-3603913|CRISPRCasFinder
TCCCAACGACGCATCGGTTATTTGTAAGCCTTCGCT	ATGAGCTTTTGGTGTAACTTTTATTGTTGGTATTCCGCCCTGACAGCGTGTTAC
TCCCAACGACGCATCAGTTATTTGTAAGCCTTCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011771176.1\|3602370_3603513_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372693
NC_008709.1\|WP_011771173.1\|3598970_3599771_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_008709.1\|WP_011771169.1\|3593699_3594710_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_008709.1\|WP_011771183.1\|3610290_3612951_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NC_008709.1\|WP_041767370.1\|3614233_3615232_+\|gluconate-operon-transcriptional-repressor-GntR	unknown	unknown	gnl\|CDD\|184949
NC_008709.1\|WP_157035466.1\|3605930_3606008_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771177.1\|3604344_3604521_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183215
NC_008709.1\|WP_011771184.1\|3613115_3613865_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NC_008709.1\|WP_011771178.1\|3604668_3605109_-\|phosphate-starvation-inducible-PsiE-family-protein	unknown	unknown	gnl\|CDD\|377613
NC_008709.1\|WP_011771170.1\|3594751_3595900_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_008709.1\|WP_011771181.1\|3607060_3608485_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_008709.1\|WP_011771182.1\|3608601_3610233_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NC_008709.1\|WP_011771167.1\|3590970_3592068_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NC_008709.1\|WP_011771175.1\|3600259_3600895_-\|leucine-efflux-protein-LeuE	unknown	unknown	gnl\|CDD\|236807
NC_008709.1\|WP_011771171.1\|3595920_3597021_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_008709.1\|WP_011771172.1\|3597319_3597895_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|376516
NC_008709.1\|WP_041766555.1\|3599927_3600125_-\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|378561
NC_008709.1\|WP_011771179.1\|3605316_3605661_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771168.1\|3592271_3593630_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_008709.1\|WP_041766557.1\|3606162_3606399_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011771176.1\|3602370_3603513_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372693	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.	3.57372e-72
NC_008709.1\|WP_011771173.1\|3598970_3599771_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.62498e-58
NC_008709.1\|WP_011771169.1\|3593699_3594710_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.26804e-65
NC_008709.1\|WP_011771183.1\|3610290_3612951_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NC_008709.1\|WP_041767370.1\|3614233_3615232_+\|gluconate-operon-transcriptional-repressor-GntR	gnl\|CDD\|184949	PRK14987, PRK14987, HTH-type transcriptional regulator GntR.	1.45391e-157
NC_008709.1\|WP_011771177.1\|3604344_3604521_-\|hypothetical-protein	gnl\|CDD\|183215	PRK11587, PRK11587, putative phosphatase; Provisional.	4.13384e-19
NC_008709.1\|WP_011771184.1\|3613115_3613865_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.2703e-120
NC_008709.1\|WP_011771178.1\|3604668_3605109_-\|phosphate-starvation-inducible-PsiE-family-protein	gnl\|CDD\|377613	pfam06146, PsiE, Phosphate-starvation-inducible E. Phosphate-starvation-inducible E (PsiE) expression is under direct positive and negative control by PhoB and cAMP-CRP, respectively. The function of PsiE remains to be determined.	7.63931e-10
NC_008709.1\|WP_011771170.1\|3594751_3595900_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.08537e-67
NC_008709.1\|WP_011771181.1\|3607060_3608485_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_008709.1\|WP_011771182.1\|3608601_3610233_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NC_008709.1\|WP_011771167.1\|3590970_3592068_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	2.54267e-64
NC_008709.1\|WP_011771175.1\|3600259_3600895_-\|leucine-efflux-protein-LeuE	gnl\|CDD\|236807	PRK10958, PRK10958, leucine export protein LeuE; Provisional.	6.49365e-104
NC_008709.1\|WP_011771171.1\|3595920_3597021_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	8.31291e-175
NC_008709.1\|WP_011771172.1\|3597319_3597895_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|376516	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.	0.00945176
NC_008709.1\|WP_041766555.1\|3599927_3600125_-\|DUF2892-domain-containing-protein	gnl\|CDD\|378561	pfam11127, DUF2892, Protein of unknown function (DUF2892). This family is conserved in bacteria. The function is not known.	5.0194e-19
NC_008709.1\|WP_011771168.1\|3592271_3593630_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.92546e-25

>NC_008709.1|WP_011771176.1|3602370_3603513_+|conjugal-transfer-protein-TraF
MNKVSILALSISSILLASNVSAANQVADATGNAMGNTGVASAGYLTAPFYNPALGADFKANDDFAILIPAISVSARDTSDSLTTIDDLQTSIEKYENSGSTSTAELNKIDGYLNQLDGNQPFAVTAGIGLAIALPAKAVSSNLFARGYAEIIATTDIATDLDIVDRYTNSTVYMLAFDYVEVGLSLAKEFIISEEQFSFGITPKYQKMATYAQRVTVSDFDISNYNESEITKNAFNLDLGAMWYKDNFRAGLAVKDLLSQSIEARGNGLKDTYKLDTQVTLGLAYASEYFTAAIDGDLTKQTRFQNQNDNTQFVRFGIEGNAWDWAQLRAGYEIDLQDTLDNSITAGIGISPFDVVSLDIAGSYAGNNQFGASANLAFTL
>NC_008709.1|WP_011771175.1|3600259_3600895_-|leucine-efflux-protein-LeuE
MFESFGVINIWTYIAGLIFIILAPGPNSLYVLKTGASYGIATGYRAVAGVLLGDAILILLSYLGVASLVQASPILFTAMRYLGAAYLLYLGVSLIYSNWVAPKVKTSSPKIKTEKVFRKSLSLSLTNPKALLFYVSFFIQFVDYSYHSTWISYSILATILEVFSLIYLSVLIVLGSAMTQYFHRNKSLAKLGNSLLGVFFMGFAARLSILN
>NC_008709.1|WP_041766555.1|3599927_3600125_-|DUF2892-domain-containing-protein
MKNNVGGIDRALRIIVGLVVIAAGVYFQNWWGAVGLIPLFTGSMRWCPAYLPFGISSCASGKSEK
>NC_008709.1|WP_011771173.1|3598970_3599771_+|GGDEF-domain-containing-protein
MNKKYSQNFPSLSLTRSQVVFRIAGIVLVIEFMVMLIIGHYHNNLNIYAEAILDVALLTLFSTPFIFYWVIKPFVDERDVTLAELSDMAHSDPLTKLPNRRHLELHFDQFIAGSLKKSIRGALMLVDLDGFKLINDIYGHDAGDAVLIEVALRLNATVREEDIVSRLGGDEFVILIHHINSVESSATDTISGIAEKLVKIIMEPIDYKGNKLQVGASIGVRMLEFEEIDTETLIQDADKAMYHAKQAGKGRAVFFEEIDQATPIHN
>NC_008709.1|WP_011771172.1|3597319_3597895_-|cytochrome-b/b6-domain-containing-protein
MNPIKITIDYLRERQSFTVLVLHITILILVLSQILVSDFMGFNEAGEISQNTLDFYGTWIHIITGLSLIPITLIFIAVEIKKQGVKHFFPYLFSDFSQLKSDLFELRKFKIPEVKTGGLGAIIEGLGLGALSLVLLSGSAWYLSWNLNGAWTHNIKDIHELFTGLVQAYVIGHGCMGLIHIFMGRWNHGRS
>NC_008709.1|WP_011771171.1|3595920_3597021_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MTSSTGLTLKNIKKSYGKTEVLHGIDLDIKLGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIEGHNVNDIPSAMRGIAMVFQSYALYPHMTVYDNMAFSMRIAKEDKATIDERVTSTAAMLQLTDYLYRLPKALSGGQRQRVAIGRAIVRNPKVFLFDEPLSNLDASLRVQTRIEIANLNESLKETTMIYVTHDQIEAMTLADRIVVLSAGKIEQVGTPLELYGQPANLFVAQFIGSPAMNIFTVTLIKSGEITSIQSQNGHQVDIPIKSHPDIENQVLTVGVRPEDFRLADETSCMLSGTISFVESLGEVTLLHLDSAESTTPVIVKIPGIINKHKGETIYLTVDADKTHLFDANGISLRYL
>NC_008709.1|WP_011771170.1|3594751_3595900_+|carbohydrate-ABC-transporter-permease
MSLKQMRRSPLMLVVHLSVLFLVLLWTFPTAGLLISSFRDKDQLAVSGWWEALSSSEQNLIGRTDAPDQQVLVDGQYILAGEIEDFNPKDEILRFGWTSQEPEAYLAGSIAKMRNGSTLTVAGDGHYSMVSPMPFTGSRGNRIFYTALASPKFTLDNYDEVLHSEGIGQSFINSLTVTIPATIIPILIAAFAAYALSWMRLPGRGILIALVVGLLVVPLQMSLIPLLQLYNTIGGYFGVSAKSYLGIWLAHTGFGLPLAIYLLRNYISGLPKEIIESARVDGANDFDIFVKIILPLSFPALASFAIFQFLWVWNDLLVATVFLGNGEHELVLTGRLRELLGSRGGNWEILTASAFVSIAVPLTVFFTLQRYLVRGLLTGSVK
>NC_008709.1|WP_011771169.1|3593699_3594710_+|sugar-ABC-transporter-permease
MEQLYYSLLVMLLGVLGCVFYFFGSNWLLIIMFPINHVSNEKMAKNIRRAAAIRPWLFLGPALFFLGLYLVYPVFDSVYLSLHGRNGEDFVGLANYQWLFNDNEFIESLINNVMWLLIVPALSTFFGLIIAALTDRIRWGNIAKSLIFMPMAISFIGASIIWKFVYDYRAEGSDQIGLLNALVVYFGGTPQAWITIPFWNDILLMVILIWIQTGFAMVILSAALRGIPEETVEAAVLDGANGIQIFFKILIPQIWGSIAVVWTTITILVLKVFDIVLAMTNGQWDTQVLANMMFDWMFRGGGDFGRGAAIAVIIMIAVIPVMVWNVRQANAQMEGR
>NC_008709.1|WP_011771168.1|3592271_3593630_+|carbohydrate-ABC-transporter-substrate-binding-protein
MKNKILNSAIALAILTSSSAFADDLKFQPGEDNTFNWASYEQFKKDVNLKGQKLTIKGPWLGADKDLAESVIAYFEAATGADVEYAGSDSFEQQIVIDVQAGSAPNIAIFPQPGLAADLASKGFLSPLSADTEKWVKENYAAGSSWVDLGTFTDKKGNKNLFGFFYKVDLKSLVWFIPENFEDAGYEIPKTMEELKGLTKQIVADGGTPWCIGLGSGAATGWPATDWVEDLMLRTQSPEDYDRWVSNDLKFNDPKVVQAIEEFGWFAGNDKFVDGGARAVATSDFRESPLGLFSSPAKCYMHRQASFIPSFFPEGTKLGLDADFFYFPAYASKDLGKPVLGAGTMWGITDDSKAAQAFIAFLQTPIAHEIWMAQSGFLTPYKGVNINAYGNDTLKKQGKILLDATTFRFDGSDLMPGKIGAGAFWTGMVDYTGGKSAQEVGNNIQATWDALK
>NC_008709.1|WP_011771167.1|3590970_3592068_-|LacI-family-DNA-binding-transcriptional-regulator
MNNLLKRFRLGGNIRGIRVKIPQKHTLKNISQQLDVSPATISNAFNKPAQLSKLLRNKILKYCEEIGYLGPSMAARSLRTGKTGVYGIVLSDDLSESLMNPVANQFLSAVAEVFDKQHVNMLLLASDADRYLVNQSDSLADAFIVYGQPKSSKILKRLELQNKPIITVDFKYKNYPSININNHEAAYSIAKYAIDHTQASSVHPVILGLHLTQNSDSQSIGDLALFSPIESISRCRLEGYKEALNDADIAIENDAIWQIEPYDDRMIQTIIRGILTASEPINLLLCMSDKIAIAALHVASELNIAVPGKLQIVGFDGIASALEQGITTVGQPIKEKGNIAAEVCLGIRKSESVTLLTELIINKSA
>NC_008709.1|WP_011771177.1|3604344_3604521_-|hypothetical-protein
MKFKGILFDLDGTLIDSLAVVERAWRSCAKRNALDAEHVMQVIHGRPARESEKGWTST
>NC_008709.1|WP_011771178.1|3604668_3605109_-|phosphate-starvation-inducible-PsiE-family-protein
MDKNIDKAVSLIHTVKKWMSFIVLILMTIIVAISIVELGIVLYVDLFDPTDGVLFLEIDELFRIFGFFFIILIGFELVETVEMYFKDNVIHAEVVLLVAVIAVSRKVILLDLEKYDPLAIVGLGIIIIALGACYWFIKLSYRGKDK
>NC_008709.1|WP_011771179.1|3605316_3605661_-|hypothetical-protein
MENSGIPFQTVDWKNIPRTEHKGETGIAYWQTMQFNGLRVRYVEYSKNYKADHWCKKGHIVYCLEGEVINELQNGTKSILRKGMSYIVSDDLSSHRSVTENGVHLLIIDGDFLK
>NC_008709.1|WP_157035466.1|3605930_3606008_-|hypothetical-protein
MSELYKQGLLTESEFSHAKSKLFSL
>NC_008709.1|WP_041766557.1|3606162_3606399_-|hypothetical-protein
MRSVLSLVFVISLSACSTKPSHVGTPQENKNGDGFSIQEVPKGFVIVGHYSEYQFVRSSSDGFVGCTNLINTAAKNTH
>NC_008709.1|WP_011771181.1|3607060_3608485_-|dihydrolipoyl-dehydrogenase
MSKEIKAQVVILGSGPAGYSAAFRAADLGLETVIIEKYSTLGGVCLNVGCIPSKALLHVSKVIEEAKALSEHGVLFGEPSTDIDKIRIWKDKVVTQLTGGLQGMAKMRKVTVVNGFGKFTGANTIEVQGDDENTTITFDNAIIAAGSRPIKLPFVPHDDPRVWDSTDALELRSVPKRLLVLGGGIIGLEMGTVYKSLGSEVDVVEFADQLVPAADIDIVQVYTKKVKSKFNIMLSTKVTGVEAKEDALYVSFEGKNAPSEAKPYDAVLVAVGRVPNGLSLDAEKAGITVTERGFIEVDKQLRTNVPHIHAIGDVVGQPMLAHKGTHEGHVAAEVIAGKKHYFDPKTIPSVAYTEPEMGWVGLTEKEAKEQGINYEKSVFPWAASGRAIASDCTAGMTKLIFDKDTHRVIGGAVVGTNGGELLGEIGLAIEMGCDAEDMALTIHAHPTLNESVGLAAEIYEGSITDLPNAKAVKK
>NC_008709.1|WP_011771182.1|3608601_3610233_-|dihydrolipoyllysine-residue-acetyltransferase
MSELKEFLLPDIGADAADITDILVSVGDTIAVEQDVLTIEGDKASMDVPSSVAGVVKEIKVKVGDSVSEGNLVLMVEVEVADADAPAADAPAAEAPASPVEEASPAVEAPAAATTQLKEISVPDIGGDEVEVTAILVSVGDSIAEEQDILTVEGDKASMDVPAPFAGVVKEIKAAVGDKVSEGSLILVVEVQGAAPAPAPAAAEPAPTPAEPAPAAAAPVAAAAEAPKAAAQLSPSQVSVAGSIKASPSVRRTAREFNLDLSVIPATGIKGRTTKEDVQTYVKAQLLLAKSGGGGGLQVLASPKVDFAKFGEVEVKPLSRIQKISGPTLHRNWVTIPHVTQFDEVDITELEAFRKEQNAIAVKRDLGLKISPLVFMMKAVAKALQQYPDFNSSLSADGESLILKKYINIGIAVDTPNGLVVPVVKDVINKGIYDLSRELGEISKKARAGKLTTRDMQGGSMTISSLGGIGGTQFTPIVNAPEVAILGVSKSAMKPLWNGKEFEPRLMVPLALSYDHRVIDGAEGARFITAINNYLSDLRTLIL
>NC_008709.1|WP_011771183.1|3610290_3612951_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MTDILNDIDAQETSEWLDALTTILEDEGTERAQFIIKKVTEQARKEGVKLPTDINTNYINTIPLAQQPDYPGDIKIERRIRSIIRWNAIMIVMRASKKELDLGGHMASYQSAAAFYEVCFNHFFRAANETDGGDLVYYQGHISPGIYARAFLEGRLSADQLDHFRQEVDGKGLPSYPHPKLLPEFWQFPTVSMGLGPIAAIYQARFLKYLDGRGLKQTANQRVYAFLGDGEMDEPESRGSLSFASREKLDNLCFLINCNLQRLDGPVMGNGSIIQELEGLFHGAGWNVVKVIWGGNWDSLLAQDSSGKLLQLMEETVDGDYQTFKSKDGAYVREHFFGKYPETAALVATWTDEEIFALKRGGHDSSKLYAAFKNAQETQGKPTVILAKTVKGYGMGAAAEGKNIAHGVKKMNETHIQTLRDRLGLQDLLSDENASTLPYLTLEEGSEEYKYLHGHREALLGYTPKRSTKFSGKLEVPSLEKFAPLLQEQKREISTTMAYVRILNLLLKDKSIGKNIVPIIADEGRTFGMEGLFRQVGIYNPDGQEYTPEDRGVVSYYKETKSGQVLQEGINELGSMSSWVAAATSYSTNDLPMIPFYIYYSMFGFQRVGDMAWMAGDQQARGFLIGATAGRTTLNGEGLQHEDGHSHIQANTIPNCISYDPTFVYELAVIIQDGIERMYGEKQENVFYYLTVMNENYAMPAMPEGAEEGIRKGIYKLQSHTGSNKVQLLSSGTIMNEVRRAAVILSEEYDVASDIFSVTSFNELTREGQDAERYNMLNPEAEQKVAYITQILGDEPTIAATDYMKNYAEQVRAFVPSDSYKVLGTDGFGRSDSRENLRRHFEVNAGYVVVAALAELAKRGDIERSVVTQAIAKFAIDVNKTNPLFA
>NC_008709.1|WP_011771184.1|3613115_3613865_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MTYAKIKQPKLADVIENRLESMILDGSLELGEKLPSERELAKQFDVSRPSLREAMQRLESKGLLNRRQGGGTYVKEELRQRLTDPLFELLNTHPESQYDLLEFRYALEGVSAYYAALRGTSADFEKIKNSFAAIEKSRQTRDLEKEVQHVAQFYLSVIEASHNVVFLHLARGIQPLLEKNIADNVQQLYGYPEVADKIHQHRLQLLDAILSKQPASAQQASAQHLSYIEETRLVMLREESLFKRALGRF
>NC_008709.1|WP_041767370.1|3614233_3615232_+|gluconate-operon-transcriptional-repressor-GntR
MSKKKRPTLQDVANIVGVTKMTVSRYLRDPSLVSSAIQAKIAVALEELGYIPNRAPDLLSHAKSHAIGILVPSLTNQVFSEVIRGIEKVTKAAGYQTMLAHYGYSAELEEERISFLLSYHIDGLILSDSYHTARTLKMIKTAGIPVIEMMDAASPAIEQAVGVDNLEAGYQMVSAMIGRGYKNIVYLGARLDARTQFRQQGYEKAMQEHGLVAKSVMTEAPSSFTLGAELLTRAMAEHPQTDGLFCTNDDLAVGAIFEAQRCGIKIPDQIAVAGFHGHNVGQSMVPKLATVITPREKIGQVTAEQLIARLNGQAIKHKVIDLGFKIQLGESI

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Crispr_ID: NC_008709_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_20

3615925-3616032

Orphan

Consensus_repeat	Method
GAGTGAGCAAAGACCTCTCCAGGTGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_20

>merge|NC_008709|20|3615925-3616032|CRISPRCasFinder
GAGTGAGCAAAGACCTCTCCAGGTGAAAGAGTCCAATTCATATTAAATCCTTCTTGATTACTATCACTGACACAATCGGGGAGTGAGCAAAGACCTCTGCAGGTGAAA

>NC_008709|20|20|3615925-3616032|CRISPRCasFinder
GAGTGAGCAAAGACCTCTCCAGGTGAAA	GAGTCCAATTCATATTAAATCCTTCTTGATTACTATCACTGACACAATCGGG
GAGTGAGCAAAGACCTCTGCAGGTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011771194.1\|3622658_3623477_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_008709.1\|WP_011771191.1\|3619154_3620477_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|227010
NC_008709.1\|WP_011771195.1\|3623598_3624834_-\|amidase	unknown	unknown	gnl\|CDD\|181375
NC_008709.1\|WP_041767370.1\|3614233_3615232_+\|gluconate-operon-transcriptional-repressor-GntR	unknown	unknown	gnl\|CDD\|184949
NC_008709.1\|WP_011771187.1\|3616227_3616542_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181628
NC_008709.1\|WP_011771190.1\|3618598_3619162_+\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|227011
NC_008709.1\|WP_011771183.1\|3610290_3612951_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NC_008709.1\|WP_011771192.1\|3620476_3621010_+\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
NC_008709.1\|WP_011771196.1\|3625392_3625938_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NC_008709.1\|WP_157035466.1\|3605930_3606008_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771189.1\|3617520_3618537_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270322
NC_008709.1\|WP_011771184.1\|3613115_3613865_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NC_008709.1\|WP_011771177.1\|3604344_3604521_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183215
NC_008709.1\|WP_011771178.1\|3604668_3605109_-\|phosphate-starvation-inducible-PsiE-family-protein	unknown	unknown	gnl\|CDD\|377613
NC_008709.1\|WP_041766559.1\|3616578_3617115_-\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
NC_008709.1\|WP_011771181.1\|3607060_3608485_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_008709.1\|WP_011771182.1\|3608601_3610233_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NC_008709.1\|WP_041766557.1\|3606162_3606399_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771193.1\|3621044_3622547_+\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_008709.1\|WP_011771179.1\|3605316_3605661_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011771194.1\|3622658_3623477_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	8.75298e-26
NC_008709.1\|WP_011771191.1\|3619154_3620477_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|227010	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism].	6.40574e-96
NC_008709.1\|WP_041767370.1\|3614233_3615232_+\|gluconate-operon-transcriptional-repressor-GntR	gnl\|CDD\|184949	PRK14987, PRK14987, HTH-type transcriptional regulator GntR.	1.45391e-157
NC_008709.1\|WP_011771187.1\|3616227_3616542_-\|hypothetical-protein	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	2.68473e-27
NC_008709.1\|WP_011771190.1\|3618598_3619162_+\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|227011	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.46339e-21
NC_008709.1\|WP_011771183.1\|3610290_3612951_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NC_008709.1\|WP_011771192.1\|3620476_3621010_+\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	6.76539e-63
NC_008709.1\|WP_011771195.1\|3623598_3624834_-\|amidase	gnl\|CDD\|181375	PRK08310, PRK08310, amidase; Provisional.	1.6291e-94
NC_008709.1\|WP_011771189.1\|3617520_3618537_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270322	cd13604, PBP2_TRAP_ketoacid_lactate_like, Substrate-binding domain of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; the type 2 periplasmic-binding protein fold. This family constitutes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.55683e-105
NC_008709.1\|WP_011771184.1\|3613115_3613865_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.2703e-120
NC_008709.1\|WP_011771177.1\|3604344_3604521_-\|hypothetical-protein	gnl\|CDD\|183215	PRK11587, PRK11587, putative phosphatase; Provisional.	4.13384e-19
NC_008709.1\|WP_011771178.1\|3604668_3605109_-\|phosphate-starvation-inducible-PsiE-family-protein	gnl\|CDD\|377613	pfam06146, PsiE, Phosphate-starvation-inducible E. Phosphate-starvation-inducible E (PsiE) expression is under direct positive and negative control by PhoB and cAMP-CRP, respectively. The function of PsiE remains to be determined.	7.63931e-10
NC_008709.1\|WP_041766559.1\|3616578_3617115_-\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.13259e-83
NC_008709.1\|WP_011771181.1\|3607060_3608485_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_008709.1\|WP_011771182.1\|3608601_3610233_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NC_008709.1\|WP_011771193.1\|3621044_3622547_+\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_008709.1\|WP_011771196.1\|3625392_3625938_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	2.12371e-116

>NC_008709.1|WP_041767370.1|3614233_3615232_+|gluconate-operon-transcriptional-repressor-GntR
MSKKKRPTLQDVANIVGVTKMTVSRYLRDPSLVSSAIQAKIAVALEELGYIPNRAPDLLSHAKSHAIGILVPSLTNQVFSEVIRGIEKVTKAAGYQTMLAHYGYSAELEEERISFLLSYHIDGLILSDSYHTARTLKMIKTAGIPVIEMMDAASPAIEQAVGVDNLEAGYQMVSAMIGRGYKNIVYLGARLDARTQFRQQGYEKAMQEHGLVAKSVMTEAPSSFTLGAELLTRAMAEHPQTDGLFCTNDDLAVGAIFEAQRCGIKIPDQIAVAGFHGHNVGQSMVPKLATVITPREKIGQVTAEQLIARLNGQAIKHKVIDLGFKIQLGESI
>NC_008709.1|WP_011771184.1|3613115_3613865_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MTYAKIKQPKLADVIENRLESMILDGSLELGEKLPSERELAKQFDVSRPSLREAMQRLESKGLLNRRQGGGTYVKEELRQRLTDPLFELLNTHPESQYDLLEFRYALEGVSAYYAALRGTSADFEKIKNSFAAIEKSRQTRDLEKEVQHVAQFYLSVIEASHNVVFLHLARGIQPLLEKNIADNVQQLYGYPEVADKIHQHRLQLLDAILSKQPASAQQASAQHLSYIEETRLVMLREESLFKRALGRF
>NC_008709.1|WP_011771183.1|3610290_3612951_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MTDILNDIDAQETSEWLDALTTILEDEGTERAQFIIKKVTEQARKEGVKLPTDINTNYINTIPLAQQPDYPGDIKIERRIRSIIRWNAIMIVMRASKKELDLGGHMASYQSAAAFYEVCFNHFFRAANETDGGDLVYYQGHISPGIYARAFLEGRLSADQLDHFRQEVDGKGLPSYPHPKLLPEFWQFPTVSMGLGPIAAIYQARFLKYLDGRGLKQTANQRVYAFLGDGEMDEPESRGSLSFASREKLDNLCFLINCNLQRLDGPVMGNGSIIQELEGLFHGAGWNVVKVIWGGNWDSLLAQDSSGKLLQLMEETVDGDYQTFKSKDGAYVREHFFGKYPETAALVATWTDEEIFALKRGGHDSSKLYAAFKNAQETQGKPTVILAKTVKGYGMGAAAEGKNIAHGVKKMNETHIQTLRDRLGLQDLLSDENASTLPYLTLEEGSEEYKYLHGHREALLGYTPKRSTKFSGKLEVPSLEKFAPLLQEQKREISTTMAYVRILNLLLKDKSIGKNIVPIIADEGRTFGMEGLFRQVGIYNPDGQEYTPEDRGVVSYYKETKSGQVLQEGINELGSMSSWVAAATSYSTNDLPMIPFYIYYSMFGFQRVGDMAWMAGDQQARGFLIGATAGRTTLNGEGLQHEDGHSHIQANTIPNCISYDPTFVYELAVIIQDGIERMYGEKQENVFYYLTVMNENYAMPAMPEGAEEGIRKGIYKLQSHTGSNKVQLLSSGTIMNEVRRAAVILSEEYDVASDIFSVTSFNELTREGQDAERYNMLNPEAEQKVAYITQILGDEPTIAATDYMKNYAEQVRAFVPSDSYKVLGTDGFGRSDSRENLRRHFEVNAGYVVVAALAELAKRGDIERSVVTQAIAKFAIDVNKTNPLFA
>NC_008709.1|WP_011771182.1|3608601_3610233_-|dihydrolipoyllysine-residue-acetyltransferase
MSELKEFLLPDIGADAADITDILVSVGDTIAVEQDVLTIEGDKASMDVPSSVAGVVKEIKVKVGDSVSEGNLVLMVEVEVADADAPAADAPAAEAPASPVEEASPAVEAPAAATTQLKEISVPDIGGDEVEVTAILVSVGDSIAEEQDILTVEGDKASMDVPAPFAGVVKEIKAAVGDKVSEGSLILVVEVQGAAPAPAPAAAEPAPTPAEPAPAAAAPVAAAAEAPKAAAQLSPSQVSVAGSIKASPSVRRTAREFNLDLSVIPATGIKGRTTKEDVQTYVKAQLLLAKSGGGGGLQVLASPKVDFAKFGEVEVKPLSRIQKISGPTLHRNWVTIPHVTQFDEVDITELEAFRKEQNAIAVKRDLGLKISPLVFMMKAVAKALQQYPDFNSSLSADGESLILKKYINIGIAVDTPNGLVVPVVKDVINKGIYDLSRELGEISKKARAGKLTTRDMQGGSMTISSLGGIGGTQFTPIVNAPEVAILGVSKSAMKPLWNGKEFEPRLMVPLALSYDHRVIDGAEGARFITAINNYLSDLRTLIL
>NC_008709.1|WP_011771181.1|3607060_3608485_-|dihydrolipoyl-dehydrogenase
MSKEIKAQVVILGSGPAGYSAAFRAADLGLETVIIEKYSTLGGVCLNVGCIPSKALLHVSKVIEEAKALSEHGVLFGEPSTDIDKIRIWKDKVVTQLTGGLQGMAKMRKVTVVNGFGKFTGANTIEVQGDDENTTITFDNAIIAAGSRPIKLPFVPHDDPRVWDSTDALELRSVPKRLLVLGGGIIGLEMGTVYKSLGSEVDVVEFADQLVPAADIDIVQVYTKKVKSKFNIMLSTKVTGVEAKEDALYVSFEGKNAPSEAKPYDAVLVAVGRVPNGLSLDAEKAGITVTERGFIEVDKQLRTNVPHIHAIGDVVGQPMLAHKGTHEGHVAAEVIAGKKHYFDPKTIPSVAYTEPEMGWVGLTEKEAKEQGINYEKSVFPWAASGRAIASDCTAGMTKLIFDKDTHRVIGGAVVGTNGGELLGEIGLAIEMGCDAEDMALTIHAHPTLNESVGLAAEIYEGSITDLPNAKAVKK
>NC_008709.1|WP_041766557.1|3606162_3606399_-|hypothetical-protein
MRSVLSLVFVISLSACSTKPSHVGTPQENKNGDGFSIQEVPKGFVIVGHYSEYQFVRSSSDGFVGCTNLINTAAKNTH
>NC_008709.1|WP_157035466.1|3605930_3606008_-|hypothetical-protein
MSELYKQGLLTESEFSHAKSKLFSL
>NC_008709.1|WP_011771179.1|3605316_3605661_-|hypothetical-protein
MENSGIPFQTVDWKNIPRTEHKGETGIAYWQTMQFNGLRVRYVEYSKNYKADHWCKKGHIVYCLEGEVINELQNGTKSILRKGMSYIVSDDLSSHRSVTENGVHLLIIDGDFLK
>NC_008709.1|WP_011771178.1|3604668_3605109_-|phosphate-starvation-inducible-PsiE-family-protein
MDKNIDKAVSLIHTVKKWMSFIVLILMTIIVAISIVELGIVLYVDLFDPTDGVLFLEIDELFRIFGFFFIILIGFELVETVEMYFKDNVIHAEVVLLVAVIAVSRKVILLDLEKYDPLAIVGLGIIIIALGACYWFIKLSYRGKDK
>NC_008709.1|WP_011771177.1|3604344_3604521_-|hypothetical-protein
MKFKGILFDLDGTLIDSLAVVERAWRSCAKRNALDAEHVMQVIHGRPARESEKGWTST
>NC_008709.1|WP_011771187.1|3616227_3616542_-|hypothetical-protein
MNKVIEQATKNIKLRSEYLLCNRKQAEQGYLACVNLAHTVVFCGAGKKSTMFDFIYVNVGIISAYNDILSAHQPYQNYPNQIKTALKTDCHRACCHSYYVGIFI
>NC_008709.1|WP_041766559.1|3616578_3617115_-|gluconokinase
MVVKMDKQLKGRVFIVMGVAGSGKSSLGEALGKALNIKFIDGDDLHPKANILKMAAGQHLNDNDRIPWLERIRDAVFSIEKNNENAIIVCSALKRQYRDLICEGNHQVTFLLLYGEFELVLKRMLARKNHFMPTALLKSQFDALELPQEDEKNIIKIDIDGSFEEVVERCIIAIKTIQ
>NC_008709.1|WP_011771189.1|3617520_3618537_+|TRAP-transporter-substrate-binding-protein
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRIDIKLLPVGSIVKHTETLGAIKMGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQYMNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNGVDDLKGLKLRAPEGLVQLVFAAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDISVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVERKKFRAIAKSQWKVFAERSDNAEKVYQSVTSFLGDNGLL
>NC_008709.1|WP_011771190.1|3618598_3619162_+|TRAP-transporter-small-permease-subunit
MSIKHPVPDHQPPEDEQPKNKLDATIINAGNWLSLLFIFTVFISFYEVVMRYAFDSPTIWVHETASFIGASLFVIGGLYAFAADKHVRVVLIYDLVSQRTRHYLNLVHHIIGITFSAFMTYGAYTLAKNAWFSPSGELRLNTSGSAWNPPFPALLKAIIVIAFCILTIQFLLHLIAEIKVLRKHSHV
>NC_008709.1|WP_011771191.1|3619154_3620477_+|TRAP-transporter-large-permease-subunit
MFDLSAIGIGYGSLLMLVMMIALLLTGMQLAFVTGFVALFFTIGWFGIDALPLVTSRLYSFVDSYIFLAVPMFVLMAALLDRSGIAHDLFEAMKLFGKRLRGGVAVQTLLVAVILASMSGVIGGETVLLGILALPQMLRLGYDRKLAIGVTCAGGALGTMLPPSIVLIIYGLTASVSIGDLFKASFLPALILAVFYILYVLIRCKINPSLAPIPSAEELAKDAETQPNFFKALLFPLLSVLVVLGSIYTGVASVTEASALGVVGIIISTWIRKELCFAMLKDAAIATMKTCGMIIWIGIGATALVGVYNLMGGIDFVEVTILSLSGGNATATLLIMMGILLVLGMFLDWVGVALLTMPIFVPIIVGLGMDPVWFGVVFCLNMQVSFLSPPFGPAAFYLKSVAPKDISLGEIFSALVPFICLQIVTLSLVIIFPVLALWWR
>NC_008709.1|WP_011771192.1|3620476_3621010_+|gluconokinase
MANINGAHSSFTGVKIVIMGVSGCGKSSIGSKLAEQLGLTFFDGDDYHCTENVDKMSQGIPLTDKDRQGWLSSLNNLFQQRAEGVVACSALTPEYRRILRHNNKELLFVYLQGDFDTIWQRHQNRTDHYFKGKTLLENQFATLVEPNASEALIIDIRQNVSEIVADIIQKLSDLNNK
>NC_008709.1|WP_011771193.1|3621044_3622547_+|NADP-dependent-phosphogluconate-dehydrogenase
MKTKIDIAVIGLGVMGANMALNLAERRFSIAAFDTNEARRLDTAKRHQALSAAALTTVASLSELIDQLATPRCIILSVPAGSIVDIICRDLLAAGLQQDDIVVDTGNSQWRDSIDRAQTYAGKFNFFTCAISGGEMGARFGPSLMPSGDKKVWQQLKPIWQAMAAKVNPVTGTEIVRSQVEHPLPEGEPCAEYIGPIGSGHFVKMVHNGIEYADMQMIAEIVQFMRQILTMSAVEVGAVFRRWNKGKLQSYLIEITADILLTVDPKTGQPLVDVIMDQASQKGTGNWTAREALVLGVPATAITASVFARCLSTQKTIRQIAAVQLTGPIISTDDKTLWIDKLADALYCSKICSYAQGFELMSAAEKEHNWTLDYISIAKIWRGGCVIRAHFLDDISKAYQTEPELLNLMLAERFTDSLAKGQLSWREVLAKAIMQGMPMPAISAAISYYDCYREADSSASLIQAMRDYFGGHTYLRKDRDSRQSFHYDWHFGSGEQTAEH
>NC_008709.1|WP_011771194.1|3622658_3623477_-|sulfite-exporter-TauE/SafE-family-protein
MEFSNELLFVILSLMATGCLAGFLAGLLGVGGGIIIVPVLFFVFQVIGVSPETAMPIATATSLATMVFTSLSSIRAHIKRGNVDLPLLKILAPFVIMGVLAGSVIVTQINGLWLSGLFGFIAIIAALNMILRAGAKPLATKLPGTPGKGVMAGTIGFLSVMVGIGGGTLTVPSLTAFSYPMHKAVGTAAAVGFLIAFPGALSLLIIGESAADAPPMTYGLVNLLACFFLIPLTVFFAPIGARVSSYLDAKLLKRIFAISLIITGLRMLLQVF
>NC_008709.1|WP_011771195.1|3623598_3624834_-|amidase
MDTSVYCRQGPKSIAAIKTRGVLSGYRFVFKDVFDVQGYVTGAGNPTWLMSHEPALHTSPIITQLLIQGAHCSGRVQSSELACGFDGMNTHYGTAINHLAPKCQSGGSSSCSAAVARGDGDFALGIDAAGEIRISASYCGLFGLRATYAALPLDHSFSLAKSFDTAGLLTRNLTVMSNVVTSLFREQPPVDQFEDVFIFVEKRALELMDSEVKEELTNKLNRLARNRYVVSTDSLLDICEVSLEELAEWFSIIQGYELIQEHSEWLAEHQSAVTKDVSRRFDKSKNISIDEYVEAKQKMANFSTLFIYLLKSKGGWLCLPTTPGLPPELKQSVNSLIYYRKRLLGLTALASLCGLPQLHLPLGKINGKSYGLSLIGMPNSEKKLIKQGQYLLQSLAVNESVNSKSWLNNKL
>NC_008709.1|WP_011771196.1|3625392_3625938_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MINKLGFYQNARQISSPFYNQRPAGSEISLLVIHCISLPEGCYGGPEIESLFTGCLDCYAHPDFSSLEGLEVSAHCVIRRNGEIEQYVPFEKGAWHAGASYFAGVDRCNDYSIGIELEGTDKSAYTERQYRSLATLTQKIQQRYPAISKQRIVAHSEIAPGRKTDPGSGFDWVYYLSLLSD

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Crispr_ID: NC_008709_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_21

4047315-4047432

Orphan

Consensus_repeat	Method
GAGGTTAATAAAATGAGTAAACGTAAACCTTATGTGCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_21

>merge|NC_008709|21|4047315-4047432|CRISPRCasFinder
GAGGTTAATAAAATGAGTAAACGTAAACCTTATGTGCGTGAACTGCCAATGGAATTAATGACAGCTTTAAATTATGGAGGTTAATAAAATGAGTAAACGTAAACCTTATGTGCGTGAA

>NC_008709|21|21|4047315-4047432|CRISPRCasFinder
GAGGTTAATAAAATGAGTAAACGTAAACCTTATGTGCGTGAA	CTGCCAATGGAATTAATGACAGCTTTAAATTATG
GAGGTTAATAAAATGAGTAAACGTAAACCTTATGTGCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011771521.1\|4048269_4048839_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_008709.1\|WP_011771516.1\|4043422_4044403_-\|elongation-factor-P--(R)-beta-lysine-ligase	unknown	unknown	gnl\|CDD\|236474
NC_008709.1\|WP_011771520.1\|4047803_4048181_+\|fumarate-reductase-subunit-FrdD	unknown	unknown	gnl\|CDD\|376762
NC_008709.1\|WP_041766656.1\|4057748_4058132_+\|lipoprotein	unknown	unknown	gnl\|CDD\|374500
NC_008709.1\|WP_011771513.1\|4041189_4041450_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NC_008709.1\|WP_011771515.1\|4043202_4043421_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227702
NC_008709.1\|WP_011771511.1\|4038303_4039236_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_008709.1\|WP_041766653.1\|4042282_4042471_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771524.1\|4057105_4057663_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NC_008709.1\|WP_041766469.1\|4054695_4054923_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771526.1\|4058121_4058838_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	unknown	unknown	gnl\|CDD\|376698
NC_008709.1\|WP_157035397.1\|4050569_4050716_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771517.1\|4044691_4046503_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236421
NC_008709.1\|WP_011771518.1\|4046502_4047240_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|183490
NC_008709.1\|WP_157035396.1\|4041668_4041833_-\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771522.1\|4048870_4049884_+\|EF-P-beta-lysylation-protein-EpmB	unknown	unknown	gnl\|CDD\|163533
NC_008709.1\|WP_011771523.1\|4050053_4050395_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771514.1\|4042816_4043077_-\|DUF4404-family-protein	unknown	unknown	gnl\|CDD\|379579
NC_008709.1\|WP_011771527.1\|4058806_4059373_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_008709.1\|WP_011771512.1\|4039309_4040875_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011771521.1\|4048269_4048839_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	8.66653e-108
NC_008709.1\|WP_041766656.1\|4057748_4058132_+\|lipoprotein	gnl\|CDD\|374500	pfam16358, RcsF, RcsF lipoprotein. The RcsF lipoprotein is a component of the Rcs signaling system. It activates the Rcs system by transmitting signals from the cell suface to the histidine kinase RcsC.	1.51107e-12
NC_008709.1\|WP_011771513.1\|4041189_4041450_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.71022e-24
NC_008709.1\|WP_011771516.1\|4043422_4044403_-\|elongation-factor-P--(R)-beta-lysine-ligase	gnl\|CDD\|236474	PRK09350, PRK09350, elongation factor P--(R)-beta-lysine ligase.	1.17257e-174
NC_008709.1\|WP_011771511.1\|4038303_4039236_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.09082e-157
NC_008709.1\|WP_011771520.1\|4047803_4048181_+\|fumarate-reductase-subunit-FrdD	gnl\|CDD\|376762	pfam02313, Fumarate_red_D, Fumarate reductase subunit D. Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centers to the electron-transport chain. This family consists of the 13kD hydrophobic subunit D.	5.61914e-48
NC_008709.1\|WP_011771524.1\|4057105_4057663_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	3.47332e-98
NC_008709.1\|WP_011771527.1\|4058806_4059373_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	9.68428e-14
NC_008709.1\|WP_011771526.1\|4058121_4058838_+\|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO	gnl\|CDD\|376698	pfam01980, UPF0066, Uncharacterized protein family UPF0066.	1.69839e-64
NC_008709.1\|WP_011771515.1\|4043202_4043421_-\|hypothetical-protein	gnl\|CDD\|227702	COG5415, COG5415, Predicted integral membrane metal-binding protein [General function prediction only].	0.00133226
NC_008709.1\|WP_011771517.1\|4044691_4046503_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	gnl\|CDD\|236421	PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated.	0
NC_008709.1\|WP_011771518.1\|4046502_4047240_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|183490	PRK12385, PRK12385, succinate dehydrogenase/fumarate reductase iron-sulfur subunit.	2.91518e-167
NC_008709.1\|WP_011771522.1\|4048870_4049884_+\|EF-P-beta-lysylation-protein-EpmB	gnl\|CDD\|163533	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB. Members of this radical SAM protein subfamily, including yjeK in E. coli, form a distinctive clade, homologous to lysine-2,3-aminomutase of Bacillus, Clostridium, and methanogenic archaea. Members of this family are found in E. coli, Buchnera, Yersinia, etc. The gene symbol is now reassigned as EpmB (Elongation factor P Modification B). [Protein fate, Protein modification and repair].	0
NC_008709.1\|WP_011771514.1\|4042816_4043077_-\|DUF4404-family-protein	gnl\|CDD\|379579	pfam14357, DUF4404, Domain of unknown function (DUF4404). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two completely conserved residues (P and G) that may be functionally important.	1.43091e-16
NC_008709.1\|WP_011771512.1\|4039309_4040875_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	1.01285e-154

>NC_008709.1|WP_011771518.1|4046502_4047240_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MNASTITIDVLRYRPEMDEKPFTQSFEVPYSPDLSVLESLQYIKDHLDSTVSFRWSCRMAICGSCGMMVNGVPKLGCKVFLRDYFPKKVSLAPLANFPIERDLVVVMDDFIDKLESVKPYLIPEKEKDLAEGPHRQTPLQMEKFKQFSMCINCGLCYAACPQYALDKKFTGPAALALLARYNRDSRDNGEAERMKIVNQEEGVWGCTFVGYCSVVCPKDVDPAAAIQLLKVDSSKDYLIGMFKPD
>NC_008709.1|WP_011771517.1|4044691_4046503_+|fumarate-reductase-(quinol)-flavoprotein-subunit
MQIIQTDVAIIGAGGSGLRAAIEIAKNHPELDIALISKVYPMRSHTVAAEGGAAGVVQGHDSLDNHFNDTVSGGDWLCEQDVVEYFVENAAKQLTQLEHWGCPWSRKEDGSINVRAFGGMKIERTWFAADKSGFHILHTLFQTSLQHPKIRRFDEHFCLDLIVEDNKIQGIVILDIAEGEVKLIQAKSVIMATGGAGRVYSYNTNGGIVTGDGMSLAYRHGVALRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGLGPEVPVGQTKNKHMELGPRDKLSQCFWQEQQKGNVFEGERGDYIHMDLRHLGEDKINERLPLIRELAKAYAGVDPVYDPIPVRPTVHYTMGGIETNAKTATSLAGLYAIGECASIGLHGANRLGSNSLTELAVFGQLGGQEAANYALNTEHQEIAPLKKQADAILARTEALLHSEGTEKMADIRLEMGDCMEEGVGIYRTKELMQKTIDKLAELKERYKNIKIVDKSSVFNTEFLYAIELGYLLDSAEAMAHSAINREESRGSHQRIDDFDKRDDQNFLKHSLAYYQADKAPKIKYSAVTITKSQPAERVYGEASDKANAAAEKAQAASAQEEV
>NC_008709.1|WP_011771516.1|4043422_4044403_-|elongation-factor-P--(R)-beta-lysine-ligase
MSWKPSASIKELKQRAKILQAIRHFFITRGLLEVETPILSQAGVTDIHLFCFQTHFMGPQISSSKPEAQGTPLYLQTSPEFHMKRLLSAGSGCIFQISKVFRNEESGRFHNPEFTLLEWYRVGFDHFRLMDEMDQLLQFILKSETARRCTYQNAFLEVLAVDPLTASLEQLKTSGEKLNLGEVLSEEPDRDTVLQLLFCIAIEPVIAQHKPCFIYNFPASQAALARISPTDKRVAERFEVYFQGIELANGFHELSDGQEQLRRFQADNRLRSRKGLAQMPIDGNFISSLATLPDCAGVALGVDRLVMLACEKKHIDDVISFTIKGA
>NC_008709.1|WP_011771515.1|4043202_4043421_-|hypothetical-protein
MAKLWLTDRAYPLWAYIFRILYWLFAIYLSSLYLQHYSYHDWFKIGLMLLSVFFVIISLLLGRCLDHFFKPG
>NC_008709.1|WP_011771514.1|4042816_4043077_-|DUF4404-family-protein
MAIKKVKSEVEKLSAILDEDLIADKCTAGDLRQVHDQLQEAIKSGDPAKLIRDKKIAQQLIVFEETNPVVGKVIKDLILALSSMGI
>NC_008709.1|WP_041766653.1|4042282_4042471_-|hypothetical-protein
MNVIHKCKAMLRIKSKSNSSASLKDRAMAVLEHDSRQEKLASEQKKFSLEECLDDTTLNKDF
>NC_008709.1|WP_157035396.1|4041668_4041833_-|hypothetical-protein
MTGLIFKIEIGCGGADFAKTEDAPKPKYLRWTTFFKAKDELYELGCKYWTIVDL
>NC_008709.1|WP_011771513.1|4041189_4041450_+|30S-ribosomal-protein-S20
MANIKSAKKRALQSEKSRKHNASRRTMMRTFIKKVVVAIEAANKEVATAEFVKLQSVLDSYATKGLINKNTAARKKSRLSAKIKAL
>NC_008709.1|WP_011771512.1|4039309_4040875_-|murein-biosynthesis-integral-membrane-protein-MurJ
MSKKLLRSGLIVSSMTLISRILGLLRDVVIANLMGAGAAADVFFFANKIPNFLRRLFAEGAFAQAFVPVLTEYEKQHSFDEVKKLVAAVSGTLGTIITIITILGVLGSSVITALFGFGWFLEWWNGGPDGQKFELASFMLKITFPYLWFITFTALSGAILNTLGKFAVAAFTPVFLNVAIISCAIFVSPHLQQPEIGLAIGVFLGGAIQFLFQIPFLHKEKLLVKPTWNWHHPGVVKIRVLMIPALFGVSVSQINLLLDTFIASFLQTGSISWLYYSDRLLEFPLGLFGIAIATVILPSLSSSHVTKSIDDFAKTLDWGMRMVCILGFPAMLGLIILAEPMLRVLFMRGEFVAHDVAMASMSLWAYGSGLLSFMMVKILAPGYYARQDTRTPVKYGMIAMGSNMVLNIIFAIPYGYVGLAIATSISATLNAGLLWFGLYQKGIYQRQKDSVSVLLRIIIAGLVMAAGLVAFNPALSEWSQLSWLEAALKLFYLIVAGAVLYLFALGLTGLRFRHFQIRMAK
>NC_008709.1|WP_011771511.1|4038303_4039236_-|bifunctional-riboflavin-kinase/FAD-synthetase
MELLRGIHNIKASHQGCVLSIGNFDGVHLGHKAVLSRLLFEAKRLKVPATVLTFEPQPAELFSGENAPARLSRLRDKFVQLDQLGLDRLLCVSFNRKFANLSAQEFIEELLIKKLGVKFLVIGDDFHFGYQRKGDFELLKKAGEKYGFEVVDTHSLTQQEYRISSSRIRAALAAGDMRQAALMLGRKYSITGRVVHGRKLGRTIGVPTANLLLKRRVSPVSGVFVVSVLGIGNQIYQGVANIGQRPTVQGVRQQLEVHIFNFNANLYGLQLEVVLEEKIRDEVRFDSFAELKIQIDKDIKQARQWHLLHK
>NC_008709.1|WP_011771520.1|4047803_4048181_+|fumarate-reductase-subunit-FrdD
MSNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHHFATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGIKRGRDLQQVFCYGFAFAVSVFVFTLLLQMF
>NC_008709.1|WP_011771521.1|4048269_4048839_-|elongation-factor-P
MGTYNTSEFKGGLKFMLDNEPCAIIENEFVKPGKGQAFSRVKLRKLLSGKVIEKTFKSGETVESADVMDIELSYLYSDDQFYHFMNNETFEQIAADVKAVGDMAKWLVEQDICTITTWNDNPIVVTPPNFVELEVTDTDPGLKGDTAGTGGKPATLATGALIRVPLFIQIGDMVKVDTRSGEYVSRVKK
>NC_008709.1|WP_011771522.1|4048870_4049884_+|EF-P-beta-lysylation-protein-EpmB
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFVKKMKKGDINDPLLQQVLPIEDEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGCAINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEVILSGGDPLMSKDDFLQHVINELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAMNKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPEQRAIQLTQEMSAALPGYLVPRLSREIAGEKNKTLIAT
>NC_008709.1|WP_011771523.1|4050053_4050395_+|hypothetical-protein
MNKENVIKQLQDNIKIIYHRAIDADKQLELLREQKKAGFAQIFTNDSAFKNHSTTFLPYVEELAADLQAIQTDNDEHYKTLIPSIVVKIELLFKTLKAFKDNLKGEQPGSEST
>NC_008709.1|WP_157035397.1|4050569_4050716_-|hypothetical-protein
MTNSNMGKVKSMPEGEYRGSDGSRADKFCASCISDHVEQGEFAVRQMS
>NC_008709.1|WP_041766469.1|4054695_4054923_+|hypothetical-protein
MLKKHLLIILYKEQLISVFAITLYHSNQTICVDTHQVFAKQKLEPEGEFAEQNRRKACTVKHLQASLRCINPQAN
>NC_008709.1|WP_011771524.1|4057105_4057663_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MTVANGKRAVFLDRDGVINVDNGYVSQRDDFEFIDGVIDACKALKEKGYLLVVITNQSGIARGYFSEEQFHTLTEWMDWSLADRGVDLDGFYYCPHHAEKGIGEYKIDCDCRKPKPGMLISAIEDLDIDASQSILVGDKVSDIQAGLAAGINTNYLVRTGKTITAEGEKIATAVFDDLNSIVKLL
>NC_008709.1|WP_041766656.1|4057748_4058132_+|lipoprotein
MLRFIIISFTVLLTTACSNLDFSSNLDKKNFDDYFKPSRVTVYEKPQLQGLDYQFIAAVDGSSCQQEEIDRPADIKEARTNARIKAAEMNANGIVFQNCLIFEQDASCISNIICYARAISVKLSDGE
>NC_008709.1|WP_011771526.1|4058121_4058838_+|tRNA-(N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase-TrmO
MGNNIVFDSIAIIHSPYKEKFAVPRQPGLVPSAIAELEILFPYDDINAFLGLQEFSHLWLVFIFHKNRNPDKWSPTVRPPRLGGNKRLGVFATRSPCRPNPIGLSLVEFHGIKQVNGKIFLMLSNIDLVDGTPIIDIKPYIPYADSKPQALAGFAQLQPESLMQVEFSTEAQKAINLLEDGYPELQQLIIEVLQQDPRPAYKKTKEDPKKYAVHLLDFNISWINAGSTTTVLDVEPLV
>NC_008709.1|WP_011771527.1|4058806_4059373_-|rhomboid-family-intramembrane-serine-protease
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLHLLSNFLPFIVFGTLIGAQGSKRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWGYLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVSFESHLLGALVGAASGYYFAKPVAQHRAL

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Crispr_ID: NC_008709_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_22

4142829-4142935

Orphan

Consensus_repeat	Method
CCCTTACCAAGGTGCACCAACTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_22

>merge|NC_008709|22|4142829-4142935|CRISPRCasFinder
CCCTTACCAAGGTGCACCAACTCGCTATAAAATTAGTACATGGATAGCGAGCGAAGTTTCTTACCGGAAACGGGCGGTTAACCCCTTACCAAGGTGCACCAACTCGC

>NC_008709|22|22|4142829-4142935|CRISPRCasFinder
CCCTTACCAAGGTGCACCAACTCGC	TATAAAATTAGTACATGGATAGCGAGCGAAGTTTCTTACCGGAAACGGGCGGTTAAC
CCCTTACCAAGGTGCACCAACTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_041766665.1\|4150006_4150834_-\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NC_008709.1\|WP_011771594.1\|4148233_4149094_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NC_008709.1\|WP_011771598.1\|4151834_4153169_+\|outer-membrane-channel-protein-TolC	unknown	unknown	gnl\|CDD\|236529
NC_008709.1\|WP_011771599.1\|4153360_4154791_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NC_008709.1\|WP_011771585.1\|4135025_4135877_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_008709.1\|WP_011771587.1\|4137804_4138848_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225041
NC_008709.1\|WP_011771593.1\|4144888_4146778_-\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NC_008709.1\|WP_011771600.1\|4154972_4156898_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_008709.1\|WP_011771589.1\|4140207_4140903_-\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NC_008709.1\|WP_011771584.1\|4134605_4135010_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NC_008709.1\|WP_011771592.1\|4142978_4144715_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NC_008709.1\|WP_011771582.1\|4132647_4133469_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_008709.1\|WP_011771595.1\|4149434_4150007_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182945
NC_008709.1\|WP_011771590.1\|4141061_4141982_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_008709.1\|WP_011771586.1\|4136109_4136877_-\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NC_008709.1\|WP_011771588.1\|4138960_4140118_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|224890
NC_008709.1\|WP_011771601.1\|4156947_4157319_-\|DUF454-family-protein	unknown	unknown	gnl\|CDD\|377291
NC_008709.1\|WP_011771597.1\|4151113_4151734_-\|ADP-ribose-diphosphatase	unknown	unknown	gnl\|CDD\|182682
NC_008709.1\|WP_011771583.1\|4133610_4134609_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NC_008709.1\|WP_011771591.1\|4142182_4142659_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_041766665.1\|4150006_4150834_-\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	9.8602e-112
NC_008709.1\|WP_011771594.1\|4148233_4149094_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	8.90247e-89
NC_008709.1\|WP_011771598.1\|4151834_4153169_+\|outer-membrane-channel-protein-TolC	gnl\|CDD\|236529	PRK09465, tolC, outer membrane channel protein; Reviewed.	9.9198e-172
NC_008709.1\|WP_011771599.1\|4153360_4154791_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NC_008709.1\|WP_011771585.1\|4135025_4135877_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	5.955e-20
NC_008709.1\|WP_011771587.1\|4137804_4138848_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|225041	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].	0
NC_008709.1\|WP_011771593.1\|4144888_4146778_-\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NC_008709.1\|WP_011771600.1\|4154972_4156898_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.53477e-26
NC_008709.1\|WP_011771589.1\|4140207_4140903_-\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	3.49259e-104
NC_008709.1\|WP_011771584.1\|4134605_4135010_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	7.22488e-21
NC_008709.1\|WP_011771592.1\|4142978_4144715_+\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NC_008709.1\|WP_011771582.1\|4132647_4133469_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.6855e-97
NC_008709.1\|WP_011771595.1\|4149434_4150007_-\|hypothetical-protein	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	3.38778e-71
NC_008709.1\|WP_011771590.1\|4141061_4141982_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.16733e-68
NC_008709.1\|WP_011771586.1\|4136109_4136877_-\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	7.87628e-97
NC_008709.1\|WP_011771588.1\|4138960_4140118_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|224890	COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion].	0
NC_008709.1\|WP_011771601.1\|4156947_4157319_-\|DUF454-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	1.94045e-29
NC_008709.1\|WP_011771597.1\|4151113_4151734_-\|ADP-ribose-diphosphatase	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	1.98549e-96
NC_008709.1\|WP_011771583.1\|4133610_4134609_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	8.28193e-34
NC_008709.1\|WP_011771591.1\|4142182_4142659_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.33689e-46

>NC_008709.1|WP_011771591.1|4142182_4142659_-|Lrp/AsnC-family-transcriptional-regulator
MQEVIKLDRIDKNILRLMQGNARISNLELADRVGLSPTPCSRRVKRLEESGIIDKHVTLLKPSVLGLNLTAMIGISMDRHTPDRFDKFERAVATLPEVLECLIVTGQSADFLLKVVVRDMQHYEKFLLGQLTKLEGVTGVHSSFVLREVVKKTEFPLD
>NC_008709.1|WP_011771590.1|4141061_4141982_+|LysR-family-transcriptional-regulator
MDISFEQLKSMIVFARVVEQGSLSAAAKHIGLSRAVVSYHIKKLETHLAIKLLNRSTRSITLTEAGSQYYQRCRVIAEQASAAHQQIENLKNEPEGLLKITCPVNLGLQIIVPALNAFRKLYPKIDLDLKLTDEVVNVIKEGIDLAVRGAPLPDSGLQASKLFSLSTCLCGAPAYFKKHGYPTSPAQLTAHEWVIYKLTSSTIELSKGNRSFSIKVKGGISTNNAAARTAFVEGGHGLGRIPTYDAWPKIQAGTLESILGEYQLNDIDLYGVFPSGGAESKKLRLLIDYLKTFFGQYKDLAQGLKL
>NC_008709.1|WP_011771589.1|4140207_4140903_-|type-1-glutamine-amidotransferase-domain-containing-protein
MNAKKILMVLTSHSELGNTGNKTGFWIEEFAAPYYIFKDAGVEITLASPAGGQPPIDPNSDTEDFQSDSTRRFAEDSDGQLQLKNTKVLADINAADYDTVFYPGGHGPLWDLTENADSISLIESFLTANKPVAAVCHATAALLNVKNPDGEFAVKGKVVSGFTNSEEEGVQLTDIVPFLLEDELIKRGAEYQKGADWSAFAVQDGLIISGQNPASSALVAEKLMKHLTTQK
>NC_008709.1|WP_011771588.1|4138960_4140118_-|iron-containing-alcohol-dehydrogenase
MLNFSFQNQTRIHFGEGQIDKLSTEIPKDAKVLVVYGGGSIKNNGVYDQVVNALKDHTWFEFSGIEPNPKYDTLMKAQAVIKEHDIDYIMAVGGGSVADGCKFIAAAALYAGDDPWDILAKQQPIESALPIGVVLTLPATGSETNTNAVVTRDGNKLPFSSAAVRPQFAVLDPAVTLSLSDRQISNGVVDAFIHTMEQYLTYSVSGKVQDRFAEGLLQTLIEEGPKALQPETKDNLDVRANIMWSATMALNGLIGAGVPQDWATHMIGHELTGAYEIDHARTLSIVLPAVMKVRRTAKHEKLLQYAERVWHITQGSEDQRIDQAIALTEDFFQKMAMPIRLSDIELGAADIDILMANLEGHGMVELGETKEITLAISRQILEQAS
>NC_008709.1|WP_011771587.1|4137804_4138848_-|NADP-dependent-oxidoreductase
MSQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSDAKSYAPAVELGEPLVGGAVCRIEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASLAHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATGAVGSLVGQIAKLKGCKVVGIAGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNTKARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMGEWLSDGKIKYKEQIVDGLENAPSAFIGLLQGENFGKLIVRVGPDNLQ
>NC_008709.1|WP_011771586.1|4136109_4136877_-|SapC-family-protein
MATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGSGDELLPVVIMGVREDENLYVDQEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYDGCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQLFCQALNELDLFEDMGAKFTLSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQEENASEEVKELEAIE
>NC_008709.1|WP_011771585.1|4135025_4135877_+|energy-transducer-TonB
MKIISSYFPFLIISLVFYGFIFLYLDQPKRITTLPLNSGEQSVQVQFISQPNKGQNPAEDKLAAPTEQKIVEAKSYVTEEEVVERAKVKSKKVIKYSAKSLILSESEIKLRKQALLESFATAGTDNVAKLKAEIFLEQLATEKILTNETEQLSKTKDQASSPQTSNGPAKKAVIKKSPSENSSSLASSTKNQGVLQEAIVVSGRKPVYPQRAILRNQQGRVVIKLTITKKGLPKNPKILTSSGFPLLDDAVLAFVDQELFMPALQGEDQVMSEQLFAFRFELN
>NC_008709.1|WP_011771584.1|4134605_4135010_+|biopolymer-transporter-ExbD
MKLSKKNFQQPARFELLPLLDVIFLLLIFFVFVMLKMTMQSSINIELPQLVDSQQQTEELLVISINSKNQLFINEEVTTEELMLAQVINLQKDNKLPILIRGDKKSDLGVALSILDKLRLSGFHHVAFATDKDQ
>NC_008709.1|WP_011771583.1|4133610_4134609_+|MotA/TolQ/ExbB-proton-channel-family-protein
MAIDNITMITANFSVVVQQINEAMPLWFQQGGLIMWLLLLTSFLTTVVTLERCFVWLHYYFKKEHLPLLDCFAYLNKKEKTKALLACQRLDTPALNMLAFGINALPFSPNEKMESYAERKIHNMSRGQTLLDTVITLAPMLGILGTVLGIIHSFNILGVQGVNNPTEVVAGIAQALVSTAMGLSVALLALLPFNLFRALLQRLTLHLEGVGSEFYHICHQQRLISNELSEIMKTQELSRTNKDNEEVFKYTVQKDSEMPYHYEFKEGSDEVKVNLHEEMKELHKTSQESLAEMYTSPISKKKEYFSIDELKLQKQKETARQVQKESFRNKTR
>NC_008709.1|WP_011771582.1|4132647_4133469_+|ABC-transporter-ATP-binding-protein
MSPLSCTKLAFSYDKKPLLTDINLDFKTGQFVGLIGANGSGKSTLLQLLLGLIKQQSGSVNLNGVNIHAQKRRDIAKQLAFVPQSIELPYAFTVQALVAMGRNPYLGPFELETAEDTRIIQEAMLKTDIIHLKTRSVTTLSGGEKQRVIIARALAQQAATILLDEPIASLDICHQIETLQLIQSLTQSGKLAITALHDLNLAASYCDRLILLGETEFNHGAGKANSGRTIIADGTPEQVLNQKNLSTYFSINADIIKINNKISLANISPVKKD
>NC_008709.1|WP_011771592.1|4142978_4144715_+|2-isopropylmalate-synthase
MSNINSSFNHKKYRAYPSIPKTDRRWPDQSIKAAPLWCSVDLRDGNQALIEPMSPSQKLDMFKLLVDVGFKEIEVGFPAASAPDFDFVRQLIEQDLIPDDVTIQVLTQAREPLIARSFAALKGAKKAIVHLYNSTSTVQREQVFKKSRDEIKTLAIQGARWMQEFAAAQSETKWSFQYSPESFTGTEREYALEVCNAVINVWQPTPDNKVIINLPSTVETSTPNVYADQIEWICDNISHRQSVSISLHTHNDRGCGVAASELGVLAGADRIEGTLLGNGERTGNMDIVTMAMNIYSQGIDPKLDFSDMDRIIATIERCTQLAVHPRHPYAGELVFAAFSGSHQDAINKCMAIDAAQRIEKPETQWQVAYLPIDPRDLGRTYQQVIRINSQSGKGGVAYILEQDYGIQMPRWMQVDFSPHVQQHAERSESEVSATIIHDIFSSTYLAAQKTASIDNYQLNRQSNADSLEAQILDTNNGAVTINGQGKGVLDAFVKGLSASIGSDIVLIDYSEHALPSKKGAENEQAEAIAYVQLSVQGARYCAAAKCHDIVTASLQAVLNAVTRSGATCQRSKAELAAV
>NC_008709.1|WP_011771593.1|4144888_4146778_-|DNA-topoisomerase-IV-subunit-B
MSDQYNSDSIEVLNGLDPVRHRPGMYTDTSRPNHLGQEVIDNSVDEALAGHAATIQVILHEDQSLEVIDDGRGMPVDIHPEERISGVELIFCKLHAGGKFSGKNYEISGGLHGVGISVVNALSKRVDVSIRRDGQVYEIAFENGEKVEELHVTGVCGKRNTGTTVHFHPDPAYFDSARFSVSRLLHLLKAKAVLCAGLTIKFKDKVNKNDYQWCYQDGLNDYLLEAVADNELLPPQPFTGKFSAKSETAEWSVVWLPDGGPSLSESYVNLIPTVQGGTHVNGFRQGLLDAMREFCDIRNLLPRGLKLSPEDIWDRCAYILSVKIKEPQFAGQTKERLSSRQCVAFVSGIVKDAFSLWLNAHVNEAELLADFCINNAQTRTRKTKKIARKKITQGPALPGKLTDCSTQETMRGEIFLVEGDSAGGSAKQARDREFQAIMPLRGKIKNTWEDDSDIILNSEEIHNISVAIGIDPASSDLSGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHLFVAMPPLYRIDIGKEVYYALDEAEKDGVLDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTTEGAEEMLEMMDMLLAKKRAGDRKVWLEDKGDMASVD
>NC_008709.1|WP_011771594.1|4148233_4149094_-|NAD(P)-dependent-oxidoreductase
MKKFGFIGLGIMGNAMALNLVKAGLDVTVWNRNVDKCTELVALGAHQGKTPREVAETCDITFTIVSDPAAALAISEGPDGVVAGIGEGRSYIDMSTVDDATSQTISAAIIKAGGRFLEAPVSGTKKPAEDGTLIILAAGDKSLYDDALPAFEIMGKMSPYLGEVGQGAKMKLVVNMIMGGMLSIFSEGISLGLKANLDGKQLLDIIDAGAMANPMFKVKGPMLLDENYTTSFPLKHMQKDMRLAVDLGDKLNLTLPTAAITNESFKQARKAGFSDEDIAAIYKTVK
>NC_008709.1|WP_011771595.1|4149434_4150007_-|hypothetical-protein
MQKILLSLHGYHSSPGSLKARLMSSYLAEHFPEISFLCPQLPCQPEKMWTLIESVFEQYKGAEIAVMGSSLGGYLAANASEQYGVKVVLINPAVLPYCLLQQYTGMQTHPYTQESYRIDENYLQQLRKLAVKELSDRQKYWVLLQKKDEVLNYQEAFDKFQGCKITCEEGGDHSFIGFERFLPDIIKFLF
>NC_008709.1|WP_041766665.1|4150006_4150834_-|3',5'-cyclic-AMP-phosphodiesterase
MSTQATKLRSDQQGCLQLLQITDTHLFSDRNKDLLGIKPAESYEAVIKHASRYSSKCQAVLSTGDLSQDHTQQSYLDFTKQIKTLNLPCYWLPGNHDTQSVMLPSLLQEGLAQSKQIVSDFWQIILLDSQVEGAPHGFLTEQQLNFLQQALTEYPDKHTLICVHHHVLPVKSAWLDQHILKNNQQFLELIKLHKNVRVVLSGHVHQAGDIEFNQVRFLTSPSTCLQFKPNSEDFDVDDSAPGYRYLALHKNGTITTKVERVAHGEFSPNKNATGY
>NC_008709.1|WP_011771597.1|4151113_4151734_-|ADP-ribose-diphosphatase
MNVHSGGSVFYNQDDVQVLSKESLYKGFFECNLYTLKHKLFAGGWSPEIKREFFERGHAAVLLPYDVKNDTVVLIEQFRLGAMAGDKSPWLLELVAGIIEQDEVAEQVAKREAFEEAGLTVKSCQFMLNYLVSPGGTTEQIDLFIANVDSSEVGGLYGLAHEGEDIRAHVVPRETAYQWVKEGKIYNAATIIALQWLELNRDNLTI
>NC_008709.1|WP_011771598.1|4151834_4153169_+|outer-membrane-channel-protein-TolC
MAIKKFTLAALFAVTSYSYSVQADTLLQVYQTAKIKDPIILKSKAQYDAYLEKVTQANAALLPQIGFGLETNYTNYNNDNLSNSNVGANIGLSQSLYNGSHWQQLSIAEKQATQYASIYGLAAQDLLFRASTAYFNVLRADEAVKSIKANKRAVERQLEQTKQRFEVGLIAITDVHEAQAAYDRTTADEIIAENNLANTYYALRELTGEDVLKVSYLNTNTFSAQKIEGGVSLWRSKALEYNLALHSKRIVKELAKMQIDLAKTGHKPTLDLTAGVGYKNTSYDNSSVSDTDISNGTIGLSLNVPIYTGGSINSQVKQAQYNYVYASEDLVQTFRSTEAQINRGYNNVGASISSLRAYEQTVLSSRSALDATKAGFEVGTRTIVDVLDATRALYESENLLANARYDYIINMLQLKLSAGTLAEQDIIDISNNLIEVDPTVLEKY
>NC_008709.1|WP_011771599.1|4153360_4154791_-|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKITLPEYDKAQVLVVGDVMLDRYWHGPTARISPEAPVPVVKVEQIEERPGGAANVALNVAALGGKVNLIGLVGDDEAANVLVKNLKSVHVNTDFVSVPNFPTITKLRVLSRHQQLLRLDFEEGFEGIDSTDILEKMHASLTRQPSVVILSDYNKGSLADVQKMIQLAKKFNSVVLVDPKGSEFEKYRGATLLTPNLAEFEAVVGKCHSEKELVERGLALIKELDLDALLVTRSEHGMTLLREGQEPLHLPTQAQEVYDVTGAGDTVISVLASSLAAGSSFEQACTLANAAAGVVVGKIGTSTVNTIELANAVYSQQEIGFGVLSEEQLKLAVKLAQHRGEKVVMTNGCFDILHAGHVSYLNTAREQGNRLIVAVNSDQSVRNLKGQGRPVNPVDRRMAVLAGLGAVDWVIEFTEETPQRLIAEILPDLLVKGGDYLPEDIAGGKEVIANGGEVRVLQFEEGCSTSEIIKTIRNNS
>NC_008709.1|WP_011771600.1|4154972_4156898_+|cyclic-nucleotide-binding-domain-containing-protein
MLTMLCIDSDPQRLAQIIEDLHPLNIRLTLLQATSLFQAEQLILQNKQNIVLILCAQTLADGNAMSIFKRSQSSTMGKIVYAATPCATELIDYINQGHIDYFITLPYQAQELISIIQQQVSHYKINHQQHPSSSKNSIVDTTRLLDKPELSNPSNFKEKFLDYSLYSDSELSHLVIKSLYKVLETGDQYKIRRHYSANHILTREGEKNCFLWFITKGEVLLKKRNAHGEIQDITIMQEGTMVGGMSFLTGEPAFSTGITLVETEVLKVDNTIFSQIMQSNTALLAPFTNLLLRNFNRRLQHSISTELALQETLESLDVAYNQLIESEKMVVLGQLVTGVAHELNNPVAAILRGSDSLKELIFTLLCCNDNSPFFQLARRTLQQGLSLVPLSTSEIRQRTKQLLPKIKDKKLAKYLINMDLDDKQIPLENNRNLRESILLLDKFYQVGSILRSSNACASRIADLVKSLKHYAAQDSPVSELADIHEGLEETLIIFENKLKHHSVIKEYQQLPKIECHPIELEQVWTNIISNAIDATGDTGIIKISTVYLPYDEAPSIQVIIEDNGPGVPAHNLDKIFELNYTTKREGHFGLGIGLTICSQIIKQHHGNIEIESQLGLFTRFIITLPVFNPNIESERLPLLRS
>NC_008709.1|WP_011771601.1|4156947_4157319_-|DUF454-family-protein
MHKQLYRYLVIFIGGLSILLGLLGIILPLLPTTPFFILALSCFARSSPYFHQKLLKTPYLGATLQDWEKHKKIDKKRKLQIYLVVLSSFLLSILILRESFLLQLLLLLILSFLLFFIHRIDEK

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Crispr_ID: NC_008709_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_23

4462975-4463104

Orphan

Consensus_repeat	Method
CTTTATTACTGGCAATCTCGACGAATACCTCCGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_23

>merge|NC_008709|23|4462975-4463104|CRISPRCasFinder
CTTTATTACTGGCAATCTCGACGAATACCTCCGGATTATTTTTAGCCATATTATTTACACTTTTTTTGTTGATGCTTGCGAAGCCGCTTTAATGCTTTATTACTGACAATCTCGACGAATACCTCCGGAT

>NC_008709|23|23|4462975-4463104|CRISPRCasFinder
CTTTATTACTGGCAATCTCGACGAATACCTCCGGAT	TATTTTTAGCCATATTATTTACACTTTTTTTGTTGATGCTTGCGAAGCCGCTTTAATG
CTTTATTACTGACAATCTCGACGAATACCTCCGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011771878.1\|4460565_4461624_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NC_008709.1\|WP_011771890.1\|4471277_4472933_-\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NC_008709.1\|WP_011771888.1\|4469267_4470410_-\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NC_008709.1\|WP_041766712.1\|4459468_4459984_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_008709.1\|WP_011771875.1\|4457938_4459210_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NC_008709.1\|WP_011771873.1\|4456391_4457324_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_008709.1\|WP_083761780.1\|4467767_4468427_-\|malonate-decarboxylase-holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234936
NC_008709.1\|WP_011771887.1\|4468473_4469268_-\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|274441
NC_008709.1\|WP_011771880.1\|4462594_4462930_-\|DUF2956-domain-containing-protein	unknown	unknown	gnl\|CDD\|378579
NC_008709.1\|WP_011771889.1\|4470396_4471275_-\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|234927
NC_008709.1\|WP_041766716.1\|4466115_4466460_+\|YggL-family-protein	unknown	unknown	gnl\|CDD\|377302
NC_008709.1\|WP_011771877.1\|4460078_4460501_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|376462
NC_008709.1\|WP_011771882.1\|4463971_4464544_-\|cobalamin-synthesis-protein-P47K	unknown	unknown	gnl\|CDD\|223597
NC_008709.1\|WP_011771883.1\|4464702_4465566_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|236993
NC_008709.1\|WP_011771879.1\|4461792_4462524_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_008709.1\|WP_011771874.1\|4457618_4457864_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NC_008709.1\|WP_011771872.1\|4455660_4456395_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
NC_008709.1\|WP_011771885.1\|4466825_4467749_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|132175
NC_008709.1\|WP_011771871.1\|4454453_4455596_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377333
NC_008709.1\|WP_011771881.1\|4463532_4463988_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011771878.1\|4460565_4461624_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.08941e-21
NC_008709.1\|WP_011771890.1\|4471277_4472933_-\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NC_008709.1\|WP_011771888.1\|4469267_4470410_-\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	7.0195e-131
NC_008709.1\|WP_041766712.1\|4459468_4459984_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.18769e-17
NC_008709.1\|WP_011771875.1\|4457938_4459210_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NC_008709.1\|WP_011771873.1\|4456391_4457324_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
NC_008709.1\|WP_083761780.1\|4467767_4468427_-\|malonate-decarboxylase-holo-ACP-synthase	gnl\|CDD\|234936	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional.	4.29725e-92
NC_008709.1\|WP_011771887.1\|4468473_4469268_-\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|274441	TIGR03134, malonate_gamma, biotin-independent malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.	1.04321e-79
NC_008709.1\|WP_011771880.1\|4462594_4462930_-\|DUF2956-domain-containing-protein	gnl\|CDD\|378579	pfam11169, DUF2956, Protein of unknown function (DUF2956). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.48639e-41
NC_008709.1\|WP_011771889.1\|4470396_4471275_-\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|234927	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated.	1.41116e-103
NC_008709.1\|WP_041766716.1\|4466115_4466460_+\|YggL-family-protein	gnl\|CDD\|377302	pfam04320, DUF469, Protein with unknown function (DUF469). Family of bacteria protein with no known function.	2.03764e-41
NC_008709.1\|WP_011771877.1\|4460078_4460501_+\|MAPEG-family-protein	gnl\|CDD\|376462	pfam01124, MAPEG, MAPEG family. This family is has been called MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism). It includes proteins such as Prostaglandin E synthase. This enzyme catalyzes the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.	4.41333e-14
NC_008709.1\|WP_011771882.1\|4463971_4464544_-\|cobalamin-synthesis-protein-P47K	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	7.52134e-31
NC_008709.1\|WP_011771883.1\|4464702_4465566_+\|YicC-family-protein	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	1.45633e-140
NC_008709.1\|WP_011771879.1\|4461792_4462524_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	5.5916e-85
NC_008709.1\|WP_011771874.1\|4457618_4457864_-\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	2.07904e-36
NC_008709.1\|WP_011771872.1\|4455660_4456395_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	2.53679e-51
NC_008709.1\|WP_011771885.1\|4466825_4467749_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	1.64542e-72
NC_008709.1\|WP_011771871.1\|4454453_4455596_-\|hypothetical-protein	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	1.63227e-70
NC_008709.1\|WP_011771881.1\|4463532_4463988_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	1.29789e-10

>NC_008709.1|WP_011771880.1|4462594_4462930_-|DUF2956-domain-containing-protein
MAKNNPKTISPETQNEAMQFAKKTNKPGQSKEQTRLIALGIQKGIAEYKKNVKSKQREADKASKRRKSQQTPATEEVQSPVVTKSRYNILPWGLLLLSWAAMAAYFITKVN
>NC_008709.1|WP_011771879.1|4461792_4462524_-|4-hydroxy-tetrahydrodipicolinate-reductase
MVTVIVNGAKGRMGSEAVNAINNDPALQLVGQCDVGDDLTQLIIASGAQVVVDLTAASAGFNNTKTILNAGARPVVGTSGFQVEQVKELQALAAEKKLGGLIAPNFSVGAVLMMKFAAEAAKYLPDAEIIEAHSTQKEESPSGTGIRTAELIAQARIKNATAFNDTELLEGARGAELHGVKIHSIRLPGVVAQQTVFFGGLSETLKIEHNSLHRESFMPGICLACKQVVKRNELVYGLEHLMD
>NC_008709.1|WP_011771878.1|4460565_4461624_-|glycosyltransferase-family-9-protein
MTLKHQLRKFDQFRRSKMPNLETAFYHLFSNTANLEKHKLTKDKVKHILLIRNNKRIGNIYFLLPFVRQLRDAYPDAKIDIMLNEPWQSNIFNNLEINHFYYSHFSFQGIFKFLKMMKTLRKITYDMILLPQTSAGDTIITALLDGRNKVSSYHPQRNLICMHAVRIENPREHAALGCLSVLEGLGHTLVEPFLHTLAFTKEELDSGLQVSRNLRNNQARLTIAYFRGARGDKLLSDKTWLTILSKFERATNQQVQWVEILSPDISSPIKTGVKTFQTADLRHLAAVLKHLDAFICCDTGPLHLADAAGASCIGLYSHTNPSSFGVIGENTINVADIENLDAQAIGKKLNLF
>NC_008709.1|WP_011771877.1|4460078_4460501_+|MAPEG-family-protein
MDFTVYDLAFSGLLVVLLTLVGQSFVANISKSRLPNHIPGKIDPSLGHESFAYRANRTMENSLENISVFLGSAFLAILINVDPFWTALTVWVYALARIIHMILYYLIATEKNPSPRSYFYLLGLFANILLLILIFIKLVD
>NC_008709.1|WP_041766712.1|4459468_4459984_+|GNAT-family-N-acetyltransferase
MPDNIKICKKNQLDLLRAISIETYRDTFSNSNSETLMTHYFQDALNKEKLQAELNHPNSTFYFIYVAKKVAGFLKVNVMSAQTDIKDYHALEIERFYIRKSFLRKGLGKQLMNFTCDLARQENKEFIWLGVWENNIPALHFYKKMGFYKIGTHPFNMAGDIQTDLLLQKDL
>NC_008709.1|WP_011771875.1|4457938_4459210_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKLESLALHCGYESEATTKAAAVPIYLTTSYTFDDTQHGADLFDLKVPGNIYTRIMNPTTDVLEKRIAAMEGGIGALAVASGMSAITYAIQCICEVGTNIVSSSQLYGGTYNLFAHSLPKQGIEARMVNFDDYQGFEDAIDENTRAVFCESIGNPAGNIVDLEKLAEIAHRHGVPLIVDNTVATPVLCRPFEFGADIVVHSLTKYIGGHGTCIGGIIVDSGKFDWVANKKRFAILNEPDPSYHGVVYTEALGAAAYIGRCRVVPLRNTGAAISPMNSFQIMQGLETLCLRMERHCENAEKLAAYLSTHEKVEWVNYAALKSSPYYSICQKICGGKASGILSFGIKGGAVSGGQFIDALEMILRLVNIGDAKSLACHPASTTHRQLNPDELKATGVSEDLVRISVGIENIDDIIADVEQALAKV
>NC_008709.1|WP_011771874.1|4457618_4457864_-|DUF3820-family-protein
MLDDPKVLSEAINQVMPFGKYAGRKLIYLPEPYLVWFNSKGFPEGKLGRQLALIYEIKLNGLEKMLAPLVKAGGFDHKSYR
>NC_008709.1|WP_011771873.1|4456391_4457324_-|hydroxymethylbilane-synthase
MTAQKIRIATRHSPLAMWQANFIKSELLKYHPNLIVELLPMKTKGDIILDTPLAKVGGKGLFVKELEVAILEGRADIAVHSIKDVPVDFPEGLGLTTICKREDPHDAFVSNHYKQLDELPEGAIVGTCSLRRQCQILALRPDIIIKNLRGNVNTRLRKLDEGEYDAIILAAAGLMRLEMQHRITSLIAPEVSLPAVGQGAVGIECRLDDEQTITLLKPLEDPETRIRITAERAMNLKLQGGCQVPIGSFAILENEQLFLRGLVGSVDGKQIIRKEITGHQNDAQQLGITLAEQLLACGAEEILAEVYKNQ
>NC_008709.1|WP_011771872.1|4455660_4456395_-|uroporphyrinogen-III-synthase
MKEARLLVTRFAPHAQRLVNLLNAQGTVAFAQPLLALQKTTEFNHASKVLAKNYDYIIAVSPNAVDYTQKALAGINWPQTEYLAVGLATQAKLKAATTQNVVVPEKCFDSEGLLDLPLLLNLQGKHILILRGVGGRELLCDTLRQRGAIVDYYQPYQRVAIVLCGKALIKEWQQQNINGAIISSIELLERLMSVVPLAAHEWLKELTIYAPSERILDQAKRWGWSNTKVLPGMSDQQVIDYFKH
>NC_008709.1|WP_011771871.1|4454453_4455596_-|hypothetical-protein
MTKSNNDNDNEEIIDNEELKSDLSAAESENIPVNKNPKSSKSALVIALLALFLIVTLILSAGYFYKLNKTLTDQQQAKMAQLSSSLSSQEATLNQQNATLESALVQVNQQLRQVKNQNKLYSSDLQSLQRRMAETTVRHPNDWILAEVEYLIRLAGSKIWLESDLATAVALLSAADQRLLVLSDPSLNPLRSALLEDINSLESLPKRDPDGLILALSNLESRADKLLVVGLNLSTPDSKDKSEVSTDIKDWNENLSKSWRSFVESFVVINKRDVKVQALLSSEQKWYLQENLRAELAKAEFAVYREQQDIYDIAMQTASDLLTDYYDLTDNTTNYFFKSIQSLRDKKVSVDYPDQLKSATVLARIMTQRVNKSLANSTEE
>NC_008709.1|WP_011771881.1|4463532_4463988_+|HIT-family-protein
MSIELDQNLQKDCYKLAESEDYLWLLLNNRYFLWMIIVPNTAQTELYRLTEQEQQKLTQQSNMISEFITQNFACDKLNVASIGNIVAQIHLHIIARTTTDLCWPGVVWGTEHKAPYPIDAVLEIQTKLQQFCLDKNITGYHFSAPEIKAVQ
>NC_008709.1|WP_011771882.1|4463971_4464544_-|cobalamin-synthesis-protein-P47K
MKKAIPCHLIAGFLGSGKTTFIKQLLTYKPVGEKWAVLVNESGNNPYSDQYYKTNNIFISEVYGGCLCCSAGMPFRVALNNLIKQVRPDRLFIEPSGAGHLSNIKQLLQGPFYQQVVQVKPIICILSEWQLSDQKYAENKNYQALAAQADKLCIKSHLSNEQAIKMARKYAPPLYFLQGTKTDLDFIERL
>NC_008709.1|WP_011771883.1|4464702_4465566_+|YicC-family-protein
MIYSMTAFARKQFKGDWGTAVWEIRSVNQRYLESYFRLPEQFRGLEVNLKDIFRKRVQRGKIECNLRFEASSSNDNALSMNQELAAQVIQNTQWILDKAGSGTFNAIDVLNWPGVMQTPEQDLDAVTVELMVGFEQTLNEFIDARAAEGTNLAAFIEQRLTAIGEQANKVRSFMPEVQVWQKARILKKFEDAKVELDSTRVEQELVILAQKTDVAEELDRLDSHISESRKVLKKGGPVGRRLDFMMQEFNREANTLGSKVINSEITAAAVECKVLIEQMREQVQNIE
>NC_008709.1|WP_041766716.1|4466115_4466460_+|YggL-family-protein
MKIDQNVKRSRRLRKKLYVNEYTIYGFEVSLSFKEIDESVLDPFLDEIVDFVESRNLMIAGGGGLDVFDTFVSSSDRYGSASEEDRLALSNWLKEKSLIKNVEVGELVDANYGL
>NC_008709.1|WP_011771885.1|4466825_4467749_-|acyltransferase-domain-containing-protein
MSLLFTFPGQGAQKPNMLRKLNVNALTQGVFEQASDMLGYNVFDLDSQSAQKNNKNVQVGLTVCAVACVELLASEGIQADYVLGLSIGAFPAAIASKIMSFEQGLKLVSLRGKLMSEAYPTGYAMAAIIGLPLHKIQVLIHSVNQTHLPVYLANINTEYQYIISGPISSLEIICQQARLLQASSAKLMNVNVPSHCLLLEEQAQSLYQEIQTATFAPPQSTFVSANAARVIFKEDFIKKDLAFNMAQQVKWWETAAMLNQRGVSMAIEMAPGSVLSKLCAVSMPSTQCLSIETSSLNSIRVLADRLS
>NC_008709.1|WP_083761780.1|4467767_4468427_-|malonate-decarboxylase-holo-ACP-synthase
MYLNSNKVQRMQVSLYQPHDLLWVKDIVIHQENPNWYANHIITRPVVVRRAKDHPLIPVGVRGSQKTQRLACWVNRQDIIKSISAIEVVKRQLWLSQYAQHPLQQFKVLQKIELIFSQLNLSWGLCGSLGFELATGLMVANENSDIDLIVYMADKPQNEKLVLLWQMLQKLPFKADLQIETPIGAIALYEWMNKPEKIMVKTNLGPILCTDPWSAITKV
>NC_008709.1|WP_011771887.1|4468473_4469268_-|biotin-independent-malonate-decarboxylase-subunit-gamma
MSERGLIWLNSLTNEGSLITGFIPSVKVIDSEINGTKARFISVVKDSENAFVRARKGEVGLLEGWNIAKAVQEVVEKDVGSIYKTAIIAVVDVSSQAYGRREEAYGIHLALAAAVNAYAQARNAGHAIIALIVGKAMSGGLLAHGYQASRIIALNDDACMVHAMSKESAARVTMRSVEQLEALAEKIPAMAYDINNYNRLGLLSNLLDVSNADNPTLDDTHIVQQALADALQDIQNNGNDLSCRLHGEGRKATKNVRQLMQADW
>NC_008709.1|WP_011771888.1|4469267_4470410_-|biotin-independent-malonate-decarboxylase-subunit-beta
MQPIKLFFEGNETISDSVRVGNVGSGDLEVIFLPASSNKTQVVINTSVNNRQQLWSDILDKCLGKERLLMDVLINDFAATPGVVSLRVEQALEQIKQGKNPPVSGKFGISFVELSSRERAHYLLDDGSQREVLGPEKNLTSPWLIPQGIVPQSDDGCIVMKGTMNSLNTVVIGIEGAFQGGAIGEVSGAKMAAALDLALQDNQQGKTTQVVLLLETGGVRLQEANLGLAAIADIHSSIVALREHINVIGVIAGSVGCFGGMSMAAALCSTLIVTQEARLGLNGPAVIEQEAGIEEYDSRNRPFIWSITGGAQRHASGFADYFSQDNADEIKQAVIQRQNSDLKTVRCEQIEHYLSIFNKINKQDQSTPELVRKYFSEGAA
>NC_008709.1|WP_011771889.1|4470396_4471275_-|triphosphoribosyl-dephospho-CoA-synthase
MDNLLIDNDATWTCLKIAQLAQWALQEEVLLTPKPGLVDAADNGAHRDLSLELMLLSAQTLTPYFTEMSSVAWGQPTGKLLREKIGEIGRDAESAMLLATRQVNTHRGAIWALGLISAAAAQNNRQSDAVSLCARAGAIARLNDKYIPITFSKGKSACQRYQVTGAKEEAQQGFPSIIKLALPTLRASRAKGDSEQAARLNALLVLMANINDTCVLSRGGENALLTVQHFCQEIIDGGGVAAENGMSQLLKLGEIMIEGNLSPGGAADLLSATLFIDALENKLISRFHYATN
>NC_008709.1|WP_011771890.1|4471277_4472933_-|malonate-decarboxylase-subunit-alpha
MSLNKKNWATKKALKVERINSVQHISHGKVIPTEQMVAALECLLHIGDRVILEGNNQKQADFLARALEKVDSTKVNNLHMIMPSVSLPEHMNIFEKGIASKLDFAFAGQQSVRISQMLEDGILEIGAVHTYVELYARLYCNLIPNVALVCGFKADKHGNLFCGGSTEDTPSLVEAPAFKDGIVIAQVNEIVDETTDLPRVDIPGDWIDFIVQADKPFYMEPLFTRDPRLIKDTHILMGMMAIKGIYAKHKVQTLNHGIGFNTAAIELLLPTYGESLGLKGKICKHWLLNPHPTLIPAIESGWVESVHSFGGELGMEEYIRERSDVFFTGPDGSMRSNRTMCQLAGQYAADMFIGATLQMDAEGNSSTVTRGRLSGFGGAPNMGHDPRGRRHSSEAWLDLITDKKSDVVKGRKLVVQMVETFQSGDTPTFVEKLDAVEVAHKTGMPIAPIMIYGDDVTHVLTEEGIAYLYMAEDLAERKLLIASVAGVTELGKQVSTEQVQLFREQGKVATPEDLGIRRSEANRSLLAAKNVSELVQWSEGLYQPPAKYRSW

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Crispr_ID: NC_008709_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008709_24

4540353-4540480

Orphan

Consensus_repeat	Method
ATAGCTTCAGTCGATTTTTTTCTTTTATGAAACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008709_24

>merge|NC_008709|24|4540353-4540480|CRISPRCasFinder
ATAGCTTCAGTCGATTTTTTTCTTTTATGAAACAGCAGTAAGACGATAATGAATAACAGAATAGAGATCAGCATTTATATAGACTCGTTTTGAATAGCTTCAGTCGATTTTTGTCTTTTATGAAACAG

>NC_008709|24|24|4540353-4540480|CRISPRCasFinder
ATAGCTTCAGTCGATTTTTTTCTTTTATGAAACAG	CAGTAAGACGATAATGAATAACAGAATAGAGATCAGCATTTATATAGACTCGTTTTGA
ATAGCTTCAGTCGATTTTTGTCTTTTATGAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008709.1\|WP_011771951.1\|4546836_4547256_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NC_008709.1\|WP_011771955.1\|4551168_4551702_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NC_008709.1\|WP_157035411.1\|4536460_4536607_+\|hypothetical-protein	unknown	unknown	unknown
NC_008709.1\|WP_011771939.1\|4526928_4528008_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NC_008709.1\|WP_011771956.1\|4551713_4552184_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NC_008709.1\|WP_011771937.1\|4524209_4525586_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NC_008709.1\|WP_011771954.1\|4549614_4551156_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_008709.1\|WP_011771944.1\|4537376_4539560_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_008709.1\|WP_011771940.1\|4528019_4530449_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NC_008709.1\|WP_011771949.1\|4544840_4545749_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_008709.1\|WP_011771950.1\|4546092_4546785_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227769
NC_008709.1\|WP_011771943.1\|4536593_4537181_+\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NC_008709.1\|WP_011771942.1\|4535628_4536474_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_008709.1\|WP_011771952.1\|4547271_4548669_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_008709.1\|WP_011771953.1\|4548698_4549565_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_008709.1\|WP_011771947.1\|4541310_4542564_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NC_008709.1\|WP_011771948.1\|4542762_4544829_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_008709.1\|WP_011771945.1\|4540003_4540333_-\|branched-chain-amino-acid-ABC-transporter	unknown	unknown	gnl\|CDD\|224601
NC_008709.1\|WP_011771938.1\|4525766_4526870_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NC_008709.1\|WP_011771941.1\|4531795_4535632_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362

Protein	Function_ID	Function_description	E-value
NC_008709.1\|WP_011771951.1\|4546836_4547256_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.60783e-65
NC_008709.1\|WP_011771955.1\|4551168_4551702_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	1.21252e-72
NC_008709.1\|WP_011771949.1\|4544840_4545749_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_008709.1\|WP_011771939.1\|4526928_4528008_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.31198e-130
NC_008709.1\|WP_011771956.1\|4551713_4552184_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	3.16097e-61
NC_008709.1\|WP_011771937.1\|4524209_4525586_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NC_008709.1\|WP_011771954.1\|4549614_4551156_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_008709.1\|WP_011771944.1\|4537376_4539560_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.02731e-122
NC_008709.1\|WP_011771940.1\|4528019_4530449_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NC_008709.1\|WP_011771950.1\|4546092_4546785_+\|hypothetical-protein	gnl\|CDD\|227769	COG5482, COG5482, Uncharacterized conserved protein [Function unknown].	1.68374e-51
NC_008709.1\|WP_011771943.1\|4536593_4537181_+\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	3.16512e-97
NC_008709.1\|WP_011771942.1\|4535628_4536474_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	8.57141e-68
NC_008709.1\|WP_011771952.1\|4547271_4548669_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NC_008709.1\|WP_011771953.1\|4548698_4549565_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	7.84056e-151
NC_008709.1\|WP_011771947.1\|4541310_4542564_-\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NC_008709.1\|WP_011771941.1\|4531795_4535632_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.05956e-63
NC_008709.1\|WP_011771945.1\|4540003_4540333_-\|branched-chain-amino-acid-ABC-transporter	gnl\|CDD\|224601	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism].	3.84092e-21
NC_008709.1\|WP_011771938.1\|4525766_4526870_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	2.30021e-170
NC_008709.1\|WP_011771948.1\|4542762_4544829_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0

>NC_008709.1|WP_011771945.1|4540003_4540333_-|branched-chain-amino-acid-ABC-transporter
MQNINYLLLFIMVMAVATFITRVLPFILLYKISDHPMLIYLGRYLPPVMMVLLLIYCFKDLRFSTFDDGPAELLALLLVVALHLWRGNALLSIMAGTGLYMFISQSLAV
>NC_008709.1|WP_011771944.1|4537376_4539560_+|EAL-domain-containing-protein
MPNNIPQPKILIVDDRIENIRSMKRVLELIDAELYTAQSGIEALGFLLRHDFSMILLDVMMPEMDGFETAELIRGNLNSQHTPIIFVTAADKDESFEFKGYDVGAVDYLYKPIQPHILQRKVRFFLQLSNNKSLLENSLCELKRVKDHNELLLKSTAEGIISLDPMGKINFANPAAKQLLMYNDDTILGIDYAHIQGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFTASPICKTNSESSGIVLVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLAQKMITSLDAPFNILGREVLISTSIGIALCSGSTQCIDSLLKRADMAMYRAKEQGRNNFQFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQIIGLEALLRWQPDGQALISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTSLLSTLTQILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSSLRYLKLLPLHVLKIDRSFINDIGGKQRDQAILESIIYLSRNLDLTVVAEGVETQEQLDFLSRFNCHSIQGYYISKPKSAANIEKLLHKNKDGNLLPMKTSVIPDRLILLPEVY
>NC_008709.1|WP_011771943.1|4536593_4537181_+|chemotaxis-protein-CheB
MKAVNRSYDLVIIGGSAGAIQALPLILAQLPESFSLPIVIVLHRLEGSGSYLHQYFKQYCVLPVVEVEDKQPLLPGQVYIAPAGYHLLVENEGHFSLSIDPRVNYCRPSIDVLLESAADSYANRLVGIILTGANTDGSKGLKQVKEAGGLTIVQRPTTAAVDIMPRAAIKATDVDWILDLEEIGFLLAEIQYSDD
>NC_008709.1|WP_157035411.1|4536460_4536607_+|hypothetical-protein
MKAVKIRVETFEQAVLLQAHRGTNVNIPLPLSDVMAANLLTGRRSESC
>NC_008709.1|WP_011771942.1|4535628_4536474_+|protein-glutamate-O-methyltransferase-CheR
MIQVDDKELQRIEIELLLDSIFQRYGYDFRHYAKASLKRRITQYMQRAGVSRITDLIAPILHDEAFFDGFLKIMSVTVTDMFRDPTFFQSLRKEIIPVLKTYPYIKIWHAGCATGEEVYSLAILLKEEGLYERTQIYATDYNSHSLAVAKEGIYPLQRIQQYSDNYISAGGKSLFTDYYHARYGGAKMLEMLKENVIFANHNLVSDGVFGEMQLVICRNVLIYFDQDLQNRVLTLLHNSLSPHGFLCLGSKESLKFSTVDKLFEAQVAEQKIYKHLHSESS
>NC_008709.1|WP_011771941.1|4531795_4535632_+|response-regulator
MKFKQSIASRLVIINLIRALVAIIVVASMLYTTREIIKSNEELDRAHQTLEHTLAMQVSSKSLLINGYGFLKSGNPEFLQTFEQERNEFDTDFAILLEGLSIHAEKSKFTLDIALEIKHIIDTWLVEEVEPQIIAQRMNVDIYSPKPVLLKSFLYGNALLTKVKDKQAELIAEEKSFLLKQQKLVQDTLAWAQLVFIGGILIFMMLGFVLSYFAATGITRRIGKLVEATQRLAKGDLDVVVDITSQDEIGLLGEYTNQTIQRLQHLEVVVKATAAEDFATQVRVLGQQDQLALSINKMSENLKNSAFERKNQTWLKNGIAELHSKMRSEHELVSLSQLVITYLAKYLNAQVGSCYLAEGKQLQLVSSYAFKRRNNNDNVFQFGEGLIGQAALEQQSILYHQLPDDHNDLLINTGISESTPTDIFVLPLVHENKVQAVLALGVSRKYSQIELEFLESVASGIAITLHVTRTRQQLVDMLEESKLQSEELQAQQEELRASNEELEEQSTMLVKSEESLRNKSEELQQINSELEERSEELERQTAEMTEKNTVIERAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNSQGNLNEEQQEDARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQFKPVANKKGVELCFDKEDVLSDDFFSDPQRIEQVLRNLLSNGIKFTHHGTVSLKVIQPGPSVRFDNPALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTISRELVKLMGGEIQLQSKEGEGSTFTLYLPLDRRLGLAAKQPLKANTRESKTHQEPLEISVPTADNTREEVVEVSTKADLLKSPLSPVPAREKTLQEKNTFADDRDILKAGEKSVLVIEDDPSFMRILIDLSRHKGYRGLSALTGREGLELAAMYQPSAIVLDLGLPDISGRQVLEQLKQNINTRHIPVHILSAEDKNTEVLQIGAVGFLTKPVSGEDIDSLFCNIEHLLQDSIKRVLLVEDDNNNRLAVTRLIANKNIEICSVSTGREAQEKLLSELFHCVILDLSLPDISGFELLNRLRHNKSITLPPIIVYTGRELSSEEYKELSQYTSSIVIKGANSPERLLDETTLFLHSVDSSLPHDQRKIIKMLHNSELVLQGRKILLVDDDLRNTYALSKVLREYGLEVIMADNGKLALQKLAEEENIELVLMDIMMPVMDGYEAMRKIRSQTRFKKLPIIALTAKAMPEDRTKSIEAGANDYCIKPIDVDKLIAIMKIWLFR
>NC_008709.1|WP_011771940.1|4528019_4530449_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDETLAGFCTDIITTIHTDGSVSVRDDGRGIPVDMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLRLTVKRHGHIYQQTYIHGVPEAPIAIIGDTEQTGTELRFWPSKETFSDTLFHYDILAKRLRELSFLNSGVSIKLFDKREEDKSDHFHYEGGIEAFVNYLNKNKTPIHQKIFHFSTDHEDGTNVEVAMQWNDGFQENIYCFTNNIPQKDGGSHLTGFRGALTRTLNNYMEKEMGKVKNAKNKTATEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEVRPVVEGAMNEHLQEFLLENPAEARIITGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKTRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGYIYIAQPPLYKIKKGKQEDYVKDEAAMQAFLTRLAMENSSLHINSDAPGISGIELESMIQRYRSVQDTITRLSRRYPSAMLNKLIYKPELTADNLANYSLVSEWANDIVATLNREDLGGTIYKTEVIKSEDELTNNVIVIVRKHGVDNRYQLDEEFFGSSGYKSLVSLGNEIQNLLEEGAYIKRGERRKEVKNFIEAVNWLMHEAKRGLYIQRYKGLGEMNPGQLWETTMDPSARRMLQVTIQDAVGADQLFSTLMGDHVEPRREFIEKNALRAENLDI
>NC_008709.1|WP_011771939.1|4526928_4528008_+|DNA-replication/repair-protein-RecF
MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNELCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFYRDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE
>NC_008709.1|WP_011771938.1|4525766_4526870_+|DNA-polymerase-III-subunit-beta
MHFSISREAFLRPLQLVVSSVAGGRPALPIMANILIEVKDNQLSLTGTDLEVELIAVIALENPSENGVITVPARKLLDICRGLSEPCEIKFQVKEEKVTIRSGRSRYLLSSLPAVDFPNIESWQSLVELTVPQAEFKKLIEFTQFAMASQDVRYYLNGMYFEASEQTLRSVATDGHRLASCSIKLNQVIEQQSVIVPRKGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFTTKLVDGRFPDYRRVIPKNGDKELISNRESLKQAFSRAAILSNEKFRGVRLILSENLLQITANNPEREEAEEYIDVDYHSANLEIGFNVSYVLDVLNTLKSEQVKITFSNSDHSALIESIDSDDSLYVLMPMRL
>NC_008709.1|WP_011771937.1|4524209_4525586_+|chromosomal-replication-initiator-protein-DnaA
MSLAIWQECLAQLKDELSAGDFSTWLRPLQADFNHSTLSLYSPNKYTSEWVRNKYMATIEDKVQQLVNQENPNHSVKIRLMVGNVSSVEKKPAKQIPTQAPLTNQPWEGESKAHRVPHKSNLIKKYTFDNFVEGKSNNFAIATTQQIAENPGDVYNPLFLYAHPGLGKTHLLHAVGNAILAENPESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTFNSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVAILITKAEERGLKLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQGITISLVQDALRDMLAVHTKQTTIDNIQKIVAQHYRIKISDMSSKRRTRTVARPRQIAMALAKELTQHSLPEIGEAFGGRDHTTVLHACRKVQELRRENNDIQEDYKILIRTLSM
>NC_008709.1|WP_011771947.1|4541310_4542564_-|valine--pyruvate-transaminase
MPYSLFGNKFTQHSGITELMDDLNEGVQGGDDILMLGGGNPAAIPEIQNRLQELMQQLLSEGKLINTLSNYDGPQGKNTFIDALVELFNDLYDWKLTAQNIMLTNGSQNAFFYLFNLLAGDFSDDKNKKILFPLAPEYIGYADASVSEDAFVAQRPKITELADGFFKYNVDFDALKVTEDIGAICVSRPTNPTGNVLTDDEINHLDRLAKKNNIPLIIDNAYGTPFPNIIFENATPFWNANTILCLSLSKFGLPGARCGIVIAKPEIIKAMSSLSGITALSPGGIGPEIVLPLVKSKEIIQLSNEVIKPFYQGKANKAITLLQSKITIPEFKIHKAEGALFLWLWFKELPISSNELYKLLKSKGLLIVSGHYFFPGLDQNWQHTQECIRVNYAQDDKVVEQGITILADTINELYANK
>NC_008709.1|WP_011771948.1|4542762_4544829_-|glycine--tRNA-ligase-subunit-beta
MAQENLLIELGTEELPPKSLRQLAESFASNVEAELNKAELSFDSVRWLASPRRLALVIANLSDSQADKIVEKRGPAVNVAFDAEGQATKAAQGWARSNGITVEQAERLITDKGEWLLFKSEVKGLSVAELIPEIAANALAKLPISKPMRWGSSSTQFIRPVHTVTMLFGSRLIQGELLGVASDRIIRGHRFLGEAELIIDHADQYETLLDDSGKVIVDYERRKAIIRDQVEALAAHENGVADIDESLLEEVTSLVEWPVTLVGSFEDKFLDVPSEALIYTMKDNQKYFPVLDKDGKLLPRFIFVSNIVSRDPAQVISGNEKVIRPRLADAEFFFETDKKKTLASRLESLSSVLFQQKLGTLKEKSERIANVAEDIALQIKADTKHAQRAGLLSKTDLMTDMVMEFPDVQGIMGMHYALHDGEEQEVAIALNEQYLPRFAGDKLPTSLVACAVSLADKLDTLVGIFGIGQAPKGAADPFALRRAAIGLLRIITNKNLDLDLVELVEIAKLQYGHKLTNDNVVQDVVDFLFARFRATYQANGYSVELIQSVLVRRPTKPVDFEKRLQAVAKFQTLPEAAPIAAANKRISNILAKVKGEINAQVDPSLLQEPAEIKLSEILGSLESTLRPLFDNLDYESALFELASLNEPVDEFFDNVMVMAEDPAIKANRLAILNRLRNLFLQIADVSVL
>NC_008709.1|WP_011771949.1|4544840_4545749_-|glycine--tRNA-ligase-subunit-alpha
MQKFDTKTFQGLILALQDFWARQGCAIVQPLDMEVGAGTFHPQTFLRSIGPEPMNSAYVQPCRRPTDGRYGENPNRLQQYYQFQVVLKPSPKNIQDLYLKSLEEIGIDTSIHDIRFVEDNWESPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECSPVTGEITYGLERIAMYVQGVESIYDLVWTDGPMGKLTYGDIFHQNEVEQSSYNFEHADVDALFNQFNQCEKDSQKLIEAGLALPAYEQVMKASHAFNLLDARHAISVTERQRYILRVRALSKAVAEAYYGKREALGFPLCKNLVK
>NC_008709.1|WP_011771950.1|4546092_4546785_+|hypothetical-protein
MNNKLKESDLYLPIKGFLKNLGYQVKGEISNCDLVAKKDDKTIIIELKLSLNITLLLQAVDRLSLADTVYIAIPKHSPIYKKQTSKVKKLIKRLGIGLIVVDMQEAGQYVEVINDPDYYVPPKNKRKQSTLLKEFSTRLGDPQKGGSNATKAVLTAYRQRCIRVAQYLSELPSSKGFEIKNAINEPQATLFLRDNYYGWFKKIDRGIYSISEKGMNELPEWVIKMNKLSL
>NC_008709.1|WP_011771951.1|4546836_4547256_-|F0F1-ATP-synthase-subunit-epsilon
MTKAMTTHLDVVSAEESLFSGRVSHLQVSGQEGELGIMPGHTPLLTPIKPGMVKMVKQHGDEEVFYISGGFLEVQPGGVTVLADTAIRGADLDKAKAEEAKRTAQEQISNPNQDIDYALVTAQLAQAIAQLRVIKMLRK
>NC_008709.1|WP_011771952.1|4547271_4548669_-|F0F1-ATP-synthase-subunit-beta
MSTGKIIQVIGAVVDVEFPQETVPNIYSALIVTAKNLTMEVQQQIGGGVVRCIAMGASDGLSRGLDVTDTGKPITVPVGTATLGRIMNVLGEPIDMCGEIGATEHYGIHREAPTYEEQSASVATLEVGIKVIDLICPFSKGGKIGLFGGAGVGKTVNMMELINNIALKHSGLSVFAGVGERTREGNDFYFEMQEAGVVNVEKPELSKVAMVYGQMNEPPGNRLRVALTGLTMAERFRDEGKDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYVPADDLTDPAPATTFAHLDATVVLNRSIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARGVQGTLQRYKELKDIIAILGMDELSEDDKLVVSRARKIGNFLTQAYHVAEVFTGDPGMYVPLKDTLAGFKGLLAGDYDDLPEQAFLYIGAIEEAVEKAKKM
>NC_008709.1|WP_011771953.1|4548698_4549565_-|F0F1-ATP-synthase-subunit-gamma
MAGDKEIRNKIASVKNTQKITGAMEMVAASKMRRAQLRMNSSLSYAKSMRKVIGHIALGELEYHHAYLEEREISRVGYIVISSDRGLCGGLNINLFKPLVAAMKKHSEANVEVDLAVIGSKAATFFNGLGANVVAQNSGLGDAPSVNDLIGSVKIMLDAYDEGKIDRLFIVNNKFISTMVQEPTISQLLPLPKAEGDKEVASDSWDYIYEGEAKDILDSLLVRYVESQVYQGVVENLACEQVSRMIAMKSATDNAGDMIDELQLVANKARQSAITQELSEICSGAAAV
>NC_008709.1|WP_011771954.1|4549614_4551156_-|F0F1-ATP-synthase-subunit-alpha
MQLNSTEISDLIKQRIGKFEAVSEARNEGTIVSVSDGIVRINGLAECMQGEMIELPNGGFAMALNLERDSVGAVVMGPFRDLREGQKVKSTGRILEVPVGKGLLGRVVNTLGAPIDGKGPIENDGYSPIEVIAPGVIDRKSVDQPVQTGWKSIDSMVPIGRGQRELIIGDRQVGKTAIAIDAIINQKHTGLFSIYVAIGQKASTIANVVNKLEEHGALENTIVVVASASETAALQYLAPYAGCSMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLKRPPGREAYPGDVFYLHSRLLERASRVSAAYVEAFTKGAVKGKTGSLTALPIIETQGGDVSAFVPTNVISITDGQIFLTTELFNSGIRPAVDPGISVSRVGGSAQCKVIKKLAGGIRTALAQYRELAAFAQFASDLDETTRKQLDHGKKVTELMKQKQYAPMSVAEQALSLFSAEKGYLTDVDVEKVLDFESSLISYAKTEHAEFYAQLNETGDYSKEIEGQFHAILETFKATQTW
>NC_008709.1|WP_011771955.1|4551168_4551702_-|F0F1-ATP-synthase-subunit-delta
MSELTTVARPYARAAFEFAVDSNKIEAWSEMLFFTAEVVNNPTMVKILTSDKTAQELAELFLNVCEDQLDENGQNFIKIMAENGRLRFLPRVAQLFAALEDEHKKQVDVNVVSAYGLSKKQLDELSKSLEKRLARKVNLHCSIDKTLIAGMVVTVGDLVIDSSAKGQLGRLSNTLQS
>NC_008709.1|WP_011771956.1|4551713_4552184_-|F0F1-ATP-synthase-subunit-B
MNINATLLGQAIAFAVFVWFCMKYVWPPLLAAIEDRQKKISDGLTQAERAGKDLELAQAKASEKLKEAKVQAAEIIEQANKRRNQIVEAAKTEAETERQKIIAQGEAEVEVDRNRVREELRLKVSALAIAGAEKIIKRSIDKEANSDIIDKLVAEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_008709_12	12.1\|2237316\|34\|NC_008709\|CRISPRCasFinder	2237316-2237349	34	NC_008709.1	2237253-2237286	0	1.0

1. spacer 12.1|2237316|34|NC_008709|CRISPRCasFinder matches to position: 2237253-2237286, mismatch: 0, identity: 1.0

taacaaagagcttgcctttcaaaataaagagaag	CRISPR spacer
taacaaagagcttgcctttcaaaataaagagaag	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008709_13	13.1\|2545105\|25\|NC_008709\|CRISPRCasFinder	2545105-2545129	25	CP009911	Borreliella chilensis strain VA1 plasmid cp26, complete sequence	20791-20815	3	0.88
NC_008709_9	9.8\|1948943\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948943-1948974	32	NZ_CP033913	Chryseobacterium shandongense strain H5143 plasmid unnamed, complete sequence	63770-63801	5	0.844
NC_008709_9	9.8\|1948943\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948943-1948974	32	NZ_CP033916	Chryseobacterium shandongense strain G0207 plasmid unnamed, complete sequence	9286-9317	5	0.844
NC_008709_8	8.1\|1916596\|32\|NC_008709\|CRISPRCasFinder	1916596-1916627	32	KF751794	Campylobacter phage CJIE4-2, complete genome	11310-11341	7	0.781
NC_008709_8	8.1\|1916596\|32\|NC_008709\|CRISPRCasFinder	1916596-1916627	32	KF751793	Campylobacter phage CJIE4-1, complete genome	12754-12785	7	0.781
NC_008709_9	9.6\|1948821\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948821-1948852	32	NC_010523	Tetragenococcus halophilus plasmid pHDC DNA, complete sequence	7463-7494	7	0.781
NC_008709_9	9.8\|1948943\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948943-1948974	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	40830-40861	7	0.781
NC_008709_9	9.11\|1949126\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949126-1949157	32	NZ_CP015356	Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence	87768-87799	7	0.781
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	MN694510	Marine virus AFVG_250M493, complete genome	9415-9446	7	0.781
NC_008709_9	9.31\|1950348\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950348-1950379	32	KC821607	Cellulophaga phage phi19:1, complete genome	17359-17390	7	0.781
NC_008709_9	9.39\|1950836\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950836-1950867	32	MN693631	Marine virus AFVG_250M1143, complete genome	23025-23056	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	CP033377	Enterococcus faecium strain Gr17 plasmid pGR17, complete sequence	4450-4481	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	NC_010880	Enterococcus faecium plasmid pEF1, complete sequence	5911-5942	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	98459-98490	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	NZ_CP035137	Enterococcus faecium strain SRCM103341 plasmid unnamed1, complete sequence	20857-20888	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	NZ_CP035221	Enterococcus faecium strain SRCM103470 plasmid unnamed1	147172-147203	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	NZ_CP042833	Enterococcus faecium strain FA3 plasmid unnamed1	184907-184938	7	0.781
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	MN693063	Marine virus AFVG_25M261, complete genome	11145-11176	7	0.781
NC_008709_9	9.45\|1951202\|32\|NC_008709\|CRISPRCasFinder,CRT	1951202-1951233	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1068338-1068369	7	0.781
NC_008709_8	8.1\|1916596\|32\|NC_008709\|CRISPRCasFinder	1916596-1916627	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	102691-102722	8	0.75
NC_008709_9	9.2\|1948577\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948577-1948608	32	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	120244-120275	8	0.75
NC_008709_9	9.8\|1948943\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948943-1948974	32	NC_012088	Onion yellows phytoplasma plasmid EcOYW1, complete sequence	3029-3060	8	0.75
NC_008709_9	9.8\|1948943\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948943-1948974	32	MF417950	Uncultured Caudovirales phage clone 7F_12, partial genome	11703-11734	8	0.75
NC_008709_9	9.11\|1949126\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949126-1949157	32	NC_027204	Sinorhizobium phage phiM12, complete genome	121009-121040	8	0.75
NC_008709_9	9.11\|1949126\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949126-1949157	32	NC_030948	Ralstonia phage RSP15 DNA, complete genome	20238-20269	8	0.75
NC_008709_9	9.11\|1949126\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949126-1949157	32	KR052481	Sinorhizobium phage phiM19, complete genome	123707-123738	8	0.75
NC_008709_9	9.11\|1949126\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949126-1949157	32	KR052480	Sinorhizobium phage phiM7, complete genome	124124-124155	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_KP008371	Klebsiella pneumoniae strain 565 plasmid PKPCAPSS, complete sequence	76567-76598	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NC_020086	Escherichia coli plasmid pE66An, complete sequence	1586-1617	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP017386	Klebsiella pneumoniae strain KP36 plasmid 1, complete sequence	22314-22345	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NC_010886	Klebsiella pneumoniae plasmid pK245, complete sequence	75005-75036	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP022443	Klebsiella sp. LY plasmid unnamed2, complete sequence	24251-24282	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP027614	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence	75977-76008	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP035181	Klebsiella pneumoniae strain BA33875 plasmid pBA33875_KPC2, complete sequence	46311-46342	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_AP019668	Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence	24336-24367	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP034677	Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence	64339-64370	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP026018	Klebsiella pneumoniae strain 13190 plasmid p13190-2, complete sequence	43034-43065	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_CP026717	Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence	26796-26827	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_MH909332	Klebsiella pneumoniae strain A1731 plasmid pA1731-KPC, complete sequence	33890-33921	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	NZ_MH909338	Klebsiella pneumoniae strain A1759 plasmid pA1759-KPC, complete sequence	10060-10091	8	0.75
NC_008709_9	9.17\|1949492\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949492-1949523	32	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	54825-54856	8	0.75
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	NZ_MK275621	Clostridium perfringens strain JXJA17 plasmid p3, complete sequence	18554-18585	8	0.75
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	MN694223	Marine virus AFVG_250M234, complete genome	27314-27345	8	0.75
NC_008709_9	9.23\|1949859\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949859-1949890	32	AJ635161	Pyrobaculum spherical virus complete genome	792-823	8	0.75
NC_008709_9	9.25\|1949981\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949981-1950012	32	LT598654	Phage NCTB genome assembly, complete genome: monopartite	201584-201615	8	0.75
NC_008709_9	9.31\|1950348\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950348-1950379	32	KC821618	Cellulophaga phage phi10:1, complete genome	16526-16557	8	0.75
NC_008709_9	9.36\|1950653\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950653-1950684	32	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	434257-434288	8	0.75
NC_008709_9	9.36\|1950653\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950653-1950684	32	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	389454-389485	8	0.75
NC_008709_9	9.41\|1950958\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950958-1950989	32	NZ_CP019235	Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence	989-1020	8	0.75
NC_008709_9	9.2\|1948577\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948577-1948608	32	MT553337	Mycobacterium phage DroogsArmy, complete genome	13072-13103	9	0.719
NC_008709_9	9.2\|1948577\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948577-1948608	32	KC661275	Mycobacterium phage HINdeR, complete genome	13179-13210	9	0.719
NC_008709_9	9.2\|1948577\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948577-1948608	32	JF957060	Mycobacterium phage Timshel, complete genome	13311-13342	9	0.719
NC_008709_9	9.2\|1948577\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948577-1948608	32	MF472895	Mycobacterium phage Kimona, complete genome	9148-9179	9	0.719
NC_008709_9	9.4\|1948699\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948699-1948730	32	NZ_LR594692	Variovorax sp. WDL1 plasmid 4	50298-50329	9	0.719
NC_008709_9	9.6\|1948821\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948821-1948852	32	MN856019	Bacteriophage sp. isolate 127, complete genome	11335-11366	9	0.719
NC_008709_9	9.7\|1948882\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1948882-1948913	32	NZ_CP047661	Escherichia coli strain LD39-1 plasmid pLD39-1-6kb, complete sequence	245-276	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	61764-61795	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	51356-51387	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	NZ_KJ645709	Enterococcus faecium strain P26 plasmid pXD5, complete sequence	6909-6940	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1241208-1241239	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	MN693708	Marine virus AFVG_250M278, complete genome	9322-9353	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	MN693736	Marine virus AFVG_250M277, complete genome	9312-9343	9	0.719
NC_008709_9	9.15\|1949370\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949370-1949401	32	MN694284	Marine virus AFVG_250M474, complete genome	9298-9329	9	0.719
NC_008709_9	9.16\|1949431\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949431-1949462	32	HQ633071	Synechococcus phage S-SKS1 genomic sequence	202006-202037	9	0.719
NC_008709_9	9.18\|1949553\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949553-1949584	32	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	10386-10417	9	0.719
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	NZ_CP016791	Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence	10865-10896	9	0.719
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	NZ_CP016791	Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence	99911-99942	9	0.719
NC_008709_9	9.21\|1949736\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949736-1949767	32	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	19779-19810	9	0.719
NC_008709_9	9.42\|1951019\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1951019-1951050	32	KY398841	Escherichia phage vB_Ecos_CEB_EC3a, complete genome	37553-37584	9	0.719
NC_008709_9	9.18\|1949553\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949553-1949584	32	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	155558-155589	10	0.688
NC_008709_9	9.18\|1949553\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1949553-1949584	32	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	91030-91061	10	0.688
NC_008709_9	9.32\|1950409\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950409-1950440	32	AP014286	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C155, * SEQUENCING IN PROGRESS *	4458-4489	10	0.688
NC_008709_9	9.36\|1950653\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950653-1950684	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	760664-760695	10	0.688
NC_008709_9	9.37\|1950714\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950714-1950745	32	KY629621	Streptococcus virus MS1, complete genome	46692-46723	11	0.656
NC_008709_9	9.40\|1950897\|32\|NC_008709\|PILER-CR,CRISPRCasFinder,CRT	1950897-1950928	32	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	210347-210378	11	0.656

1. spacer 13.1|2545105|25|NC_008709|CRISPRCasFinder matches to CP009911 (Borreliella chilensis strain VA1 plasmid cp26, complete sequence) position: , mismatch: 3, identity: 0.88

aaaccccaataatggctttataaac	CRISPR spacer
taccccaaataatggctttataaac	Protospacer
 * *** ******************

2. spacer 9.8|1948943|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033913 (Chryseobacterium shandongense strain H5143 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

ccttattagttatttaattaatatatttaata	CRISPR spacer
ttatattagttatttaattaatataactaata	Protospacer
.. ********************** .*****

3. spacer 9.8|1948943|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033916 (Chryseobacterium shandongense strain G0207 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

ccttattagttatttaattaatatatttaata	CRISPR spacer
ttatattagttatttaattaatataactaata	Protospacer
.. ********************** .*****

4. spacer 8.1|1916596|32|NC_008709|CRISPRCasFinder matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 7, identity: 0.781

----ttgaatctaaatttactcaaaacagacaaagt	CRISPR spacer
ggacttg----taaatttactcaaagaagacaaaga	Protospacer
    ***    **************. ********

5. spacer 8.1|1916596|32|NC_008709|CRISPRCasFinder matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 7, identity: 0.781

----ttgaatctaaatttactcaaaacagacaaagt	CRISPR spacer
ggacttg----taaatttactcaaagaagacaaaga	Protospacer
    ***    **************. ********

6. spacer 9.6|1948821|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_010523 (Tetragenococcus halophilus plasmid pHDC DNA, complete sequence) position: , mismatch: 7, identity: 0.781

tgatgattggcttgatattttggcacgttggc	CRISPR spacer
ttatgattggcgtgatattttgacacacttac	Protospacer
* ********* **********.***..* .*

7. spacer 9.8|1948943|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.781

ccttattagttatttaattaatatatttaata	CRISPR spacer
ataaattagatatttaattaaaatatttaatt	Protospacer
 .  ***** *********** *********

8. spacer 9.11|1949126|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015356 (Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence) position: , mismatch: 7, identity: 0.781

ctctttctgccttggcaagttctgctaattct	CRISPR spacer
atctttttgccttggaaagttctgtgtaatct	Protospacer
 *****.******** ********.  * ***

9. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 7, identity: 0.781

caatataactattaaaaaccaatcccaatcat---	CRISPR spacer
taatgtaactattaaaaaacaatc---atcttatg	Protospacer
.***.************* *****   *** *

10. spacer 9.31|1950348|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KC821607 (Cellulophaga phage phi19:1, complete genome) position: , mismatch: 7, identity: 0.781

tcagattgtattttgtgagcgtgtgcaactgt	CRISPR spacer
tctaatatcattttgtgagcgtgagcaaccgt	Protospacer
** .**  .************** *****.**

11. spacer 9.39|1950836|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN693631 (Marine virus AFVG_250M1143, complete genome) position: , mismatch: 7, identity: 0.781

-tattaagccataaattagcagtggcaaataaa	CRISPR spacer
ctgctaa-tcaaaaattagcaatggcaaataat	Protospacer
 *..*** .** *********.**********

12. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to CP033377 (Enterococcus faecium strain Gr17 plasmid pGR17, complete sequence) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

13. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_010880 (Enterococcus faecium plasmid pEF1, complete sequence) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

14. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

15. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035137 (Enterococcus faecium strain SRCM103341 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

16. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035221 (Enterococcus faecium strain SRCM103470 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

17. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042833 (Enterococcus faecium strain FA3 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
atcactgatgttaatgcattacctgaagatat	Protospacer
   *.************* ** *********

18. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN693063 (Marine virus AFVG_25M261, complete genome) position: , mismatch: 7, identity: 0.781

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
gttaataatgataatgcactaactgaagataa	Protospacer
   * *.*** ******* *************

19. spacer 9.45|1951202|32|NC_008709|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 7, identity: 0.781

cttcagtcacactgcactgttccgtgttgtga----	CRISPR spacer
cttcagtcacactgtattgttcc----tgagaagcg	Protospacer
**************.*.******    ** **

20. spacer 8.1|1916596|32|NC_008709|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.75

ttgaatctaaatttactcaaaacagacaaagt	CRISPR spacer
ctttattctaatttactcaaaacaggaaaagt	Protospacer
.*  **.. ****************. *****

21. spacer 9.2|1948577|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 8, identity: 0.75

-acaaattttgtgcggcttgacctgctttgcgg	CRISPR spacer
tacgcg-tttgttcggcttggcctgctttggag	Protospacer
 **. . ***** *******.********* .*

22. spacer 9.8|1948943|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_012088 (Onion yellows phytoplasma plasmid EcOYW1, complete sequence) position: , mismatch: 8, identity: 0.75

ccttattagttatttaattaatatatttaata	CRISPR spacer
aaaaaatagttatataaataatatatttaatc	Protospacer
    * ******* *** *************

23. spacer 9.8|1948943|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MF417950 (Uncultured Caudovirales phage clone 7F_12, partial genome) position: , mismatch: 8, identity: 0.75

ccttattagttatttaattaatatatttaata	CRISPR spacer
ttatggtagttgtttaattaaaatatttaatc	Protospacer
.. *. *****.********* *********

24. spacer 9.11|1949126|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_027204 (Sinorhizobium phage phiM12, complete genome) position: , mismatch: 8, identity: 0.75

ctctttctgccttggcaagttctgctaattct	CRISPR spacer
agcgaattgccttggcaagtgctgctaatcct	Protospacer
  *   .************* ********.**

25. spacer 9.11|1949126|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctctttctgccttggcaagttctgctaattct	CRISPR spacer
ttgtttctgcctttgcaagttctgcttcaccc	Protospacer
.* ********** ************   .*.

26. spacer 9.11|1949126|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KR052481 (Sinorhizobium phage phiM19, complete genome) position: , mismatch: 8, identity: 0.75

ctctttctgccttggcaagttctgctaattct	CRISPR spacer
agcgaattgccttggcaagtgctgctaatcct	Protospacer
  *   .************* ********.**

27. spacer 9.11|1949126|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KR052480 (Sinorhizobium phage phiM7, complete genome) position: , mismatch: 8, identity: 0.75

ctctttctgccttggcaagttctgctaattct	CRISPR spacer
agcgaattgccttggcaagtgctgctaatcct	Protospacer
  *   .************* ********.**

28. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP008371 (Klebsiella pneumoniae strain 565 plasmid PKPCAPSS, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

29. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_020086 (Escherichia coli plasmid pE66An, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

30. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017386 (Klebsiella pneumoniae strain KP36 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

31. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_010886 (Klebsiella pneumoniae plasmid pK245, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

32. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022443 (Klebsiella sp. LY plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

33. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027614 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

34. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035181 (Klebsiella pneumoniae strain BA33875 plasmid pBA33875_KPC2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

35. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019668 (Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

36. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034677 (Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

37. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026018 (Klebsiella pneumoniae strain 13190 plasmid p13190-2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

38. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026717 (Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

39. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH909332 (Klebsiella pneumoniae strain A1731 plasmid pA1731-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

40. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH909338 (Klebsiella pneumoniae strain A1759 plasmid pA1759-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagac---ataaaatcatgtggttgtggtaatg	CRISPR spacer
---aaattcaataaaatcatgtgattgtggtaaaa	Protospacer
   *.*.   *************.********* .

41. spacer 9.17|1949492|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 8, identity: 0.75

tgcagacataaaatcatgtggttgtggtaatg	CRISPR spacer
acctgacataaaatcatctggttgtgggtctt	Protospacer
  * ************* *********   *

42. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275621 (Clostridium perfringens strain JXJA17 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

caatataactattaaaaaccaatcccaatcat-	CRISPR spacer
gaatacaactattaaaaatcaat-ctagctatc	Protospacer
 ****.************.**** *.*...**

43. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN694223 (Marine virus AFVG_250M234, complete genome) position: , mismatch: 8, identity: 0.75

caatataactattaaaaaccaatcccaatcat-	CRISPR spacer
taatgtaactattaaaaaacaatctt-cttatg	Protospacer
.***.************* *****..  *.**

44. spacer 9.23|1949859|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to AJ635161 (Pyrobaculum spherical virus complete genome) position: , mismatch: 8, identity: 0.75

tgccattttaggcgctctaacgctgccgcttt	CRISPR spacer
agctcttttaggcgctctaaagctgtcggcat	Protospacer
 **. *************** ****.** . *

45. spacer 9.25|1949981|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.75

cgttcattccgcgatacacgcgccttacgata	CRISPR spacer
cgttcattccgcgatacactcgcggcacacct	Protospacer
******************* ***  .**. .

46. spacer 9.31|1950348|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KC821618 (Cellulophaga phage phi10:1, complete genome) position: , mismatch: 8, identity: 0.75

tcagattgtattttgtgagcgtgtgcaactgt	CRISPR spacer
tctactatcattttgtgagcgtgagcaaccgt	Protospacer
** . *  .************** *****.**

47. spacer 9.36|1950653|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 8, identity: 0.75

-ccaataacttgatcatggttttgagcgtgtat	CRISPR spacer
gcctgt-gcttgatcatggctttgtgcgtgtcg	Protospacer
 ** .* .***********.**** ******

48. spacer 9.36|1950653|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 8, identity: 0.75

ccaataacttgatcatggttttgagcgtgtat	CRISPR spacer
ccatccacctgatcatggttttcagcgtgagg	Protospacer
*** . **.************* ****** .

49. spacer 9.41|1950958|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019235 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence) position: , mismatch: 8, identity: 0.75

caatgacaaattaaacgtaaaagtagtgcacc	CRISPR spacer
aaatgacaacttaaaagtaaaagtagctgaat	Protospacer
 ******** ***** **********.  * .

50. spacer 9.2|1948577|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MT553337 (Mycobacterium phage DroogsArmy, complete genome) position: , mismatch: 9, identity: 0.719

acaaattttgtgcggcttgacctgctttgcgg	CRISPR spacer
cgcgatcttgtgcggctcgacctgcttcacgc	Protospacer
   .**.**********.*********..**

51. spacer 9.2|1948577|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KC661275 (Mycobacterium phage HINdeR, complete genome) position: , mismatch: 9, identity: 0.719

acaaattttgtgcggcttgacctgctttgcgg	CRISPR spacer
cgcgatcttgtgcggctcgacctgcttcacgc	Protospacer
   .**.**********.*********..**

52. spacer 9.2|1948577|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to JF957060 (Mycobacterium phage Timshel, complete genome) position: , mismatch: 9, identity: 0.719

acaaattttgtgcggcttgacctgctttgcgg	CRISPR spacer
cgcgatcttgtgcggctcgacctgcttcacgc	Protospacer
   .**.**********.*********..**

53. spacer 9.2|1948577|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MF472895 (Mycobacterium phage Kimona, complete genome) position: , mismatch: 9, identity: 0.719

acaaattttgtgcggcttgacctgctttgcgg	CRISPR spacer
ggcgatcttgtgcggctcgacctgcttgacgc	Protospacer
.  .**.**********.********* .**

54. spacer 9.4|1948699|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594692 (Variovorax sp. WDL1 plasmid 4) position: , mismatch: 9, identity: 0.719

cgcgttgccgccgtaaaaatggttatcatagt	CRISPR spacer
cgcgttgccgccctaaaaatagtgtgagatgt	Protospacer
************ *******.**    .  **

55. spacer 9.6|1948821|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN856019 (Bacteriophage sp. isolate 127, complete genome) position: , mismatch: 9, identity: 0.719

tgatgattggcttgatattttggcacgttggc	CRISPR spacer
tcatgatcggcttgatatgttggcatttctct	Protospacer
* *****.********** ******. *.  .

56. spacer 9.7|1948882|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047661 (Escherichia coli strain LD39-1 plasmid pLD39-1-6kb, complete sequence) position: , mismatch: 9, identity: 0.719

ttaatgcaaggccacaacgtttttggatcatg	CRISPR spacer
attctgcaaggccataacgttttcggacctac	Protospacer
 *  **********.********.***.*

57. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
ctgttttatagtttttttagtttaaattgtta	Protospacer
     * ***************.***.****.

58. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
ctgttttatagtttttttagtttaaattgtta	Protospacer
     * ***************.***.****.

59. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ645709 (Enterococcus faecium strain P26 plasmid pXD5, complete sequence) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
tctatcaatattttttttagttaaaactgaaa	Protospacer
  ** .**** *********** ******  .

60. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
tataataatagattttttaattcaatcattaa	Protospacer
 .********* *******.***** *  * .

61. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN693708 (Marine virus AFVG_250M278, complete genome) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
agcttttttagtttttttagttgaaacagttt	Protospacer
.*.  *  ************** **** ***

62. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN693736 (Marine virus AFVG_250M277, complete genome) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
agcttttttagtttttttagttgaaacagttt	Protospacer
.*.  *  ************** **** ***

63. spacer 9.15|1949370|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to MN694284 (Marine virus AFVG_250M474, complete genome) position: , mismatch: 9, identity: 0.719

ggtaataatagtttttttagttcaaactgttg	CRISPR spacer
agcttttttagtttttttagttgaaacagttt	Protospacer
.*.  *  ************** **** ***

64. spacer 9.16|1949431|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 9, identity: 0.719

gtgatcatttcaaatggcactacatcaccact	CRISPR spacer
attgatttttcaaatgagactacatcaccagt	Protospacer
.* . . *********. ************ *

65. spacer 9.18|1949553|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgatatttattaatcttttgtattgaaaag	CRISPR spacer
tactatattctttaatcttttgtattgtattt	Protospacer
..* *****. **************** *

66. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016791 (Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caatataactattaaaaaccaatcccaatcat	CRISPR spacer
tagcgctattaataaaaacaaatcccaatcat	Protospacer
.*.... *.** ******* ************

67. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016791 (Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caatataactattaaaaaccaatcccaatcat	CRISPR spacer
tagcgctattaataaaaacaaatcccaatcat	Protospacer
.*.... *.** ******* ************

68. spacer 9.21|1949736|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caatataactattaaaaaccaatcccaatcat	CRISPR spacer
tagcgctattaataaaaacaaatcccaatcat	Protospacer
.*.... *.** ******* ************

69. spacer 9.42|1951019|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KY398841 (Escherichia phage vB_Ecos_CEB_EC3a, complete genome) position: , mismatch: 9, identity: 0.719

cagattgatgttaatgcaataactgaagataa	CRISPR spacer
tatgtggatgttaatgcaaaaactaaagacgg	Protospacer
.* .* ************* ****.****...

70. spacer 9.18|1949553|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgatatttattaatcttttgtattgaaaag	CRISPR spacer
attaaagtttattaattttttgtattgtaatt	Protospacer
  ..* .*********.********** **

71. spacer 9.18|1949553|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgatatttattaatcttttgtattgaaaag	CRISPR spacer
attaaagtttattaattttttgtattgtaatt	Protospacer
  ..* .*********.********** **

72. spacer 9.32|1950409|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to AP014286 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C155, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

caaaacaattagcagtgatatgtttatataat	CRISPR spacer
tttcagttttaccagtgatatctttatataaa	Protospacer
.   *   *** ********* *********

73. spacer 9.36|1950653|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataacttgatcatggttttgagcgtgtat	CRISPR spacer
tgacctacttgatcatggttatgagggtggtg	Protospacer
. * . ************** **** ***

74. spacer 9.37|1950714|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to KY629621 (Streptococcus virus MS1, complete genome) position: , mismatch: 11, identity: 0.656

caagtacaacctgattaagtttagcgactctg	CRISPR spacer
tgtagctaaactgattaagtttagagactccc	Protospacer
.. .  .** ************** *****.

75. spacer 9.40|1950897|32|NC_008709|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 11, identity: 0.656

gttctcgaaaagctagcaatttgacttaaatc	CRISPR spacer
tcaaacgcaaagttagcaatttgacttactcg	Protospacer
 .   ** ****.***************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6450 : 31712

Vibrio_phage(20.0%)

transposase,protease,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086004598.1\|6450_7483_-\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.5e-12	73.9
WP_011768437.1\|7860_9195_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.3e-41	30.6
WP_011768438.1\|9206_9761_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_011768439.1\|10063_10597_-	cell division protein	NA	NA	NA	NA
WP_011768440.1\|10600_12349_-\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	4.7e-88	34.3
WP_011768441.1\|12571_13027_-	hypothetical protein	NA	NA	NA	NA
WP_011768442.1\|13203_15375_-	DNA helicase II	A7KV33	Bacillus_phage	6.9e-105	35.0
WP_011768443.1\|15411_16119_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_011768444.1\|16152_17052_-	tyrosine recombinase XerC	A0A142F2H8	Mycobacterium_phage	2.8e-12	31.4
WP_011768445.1\|17601_18108_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011768446.1\|18216_19665_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011768447.1\|19698_20217_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011768448.1\|20227_20935_+	hypothetical protein	NA	NA	NA	NA
WP_011768449.1\|20950_22315_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011768450.1\|22318_22966_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011768451.1\|22980_26403_+	hypothetical protein	NA	NA	NA	NA
WP_011768452.1\|26406_28101_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011768453.1\|28100_28589_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011768454.1\|28588_28993_+	hypothetical protein	NA	NA	NA	NA
WP_011768455.1\|28992_30762_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011768456.1\|30758_31712_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

936851 : 994864

Catovirus(13.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011769153.1\|936851_937178_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-12	43.2
WP_011769154.1\|937254_939513_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.1e-161	40.4
WP_011769155.1\|939603_939822_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_011769156.1\|940584_940896_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_011769157.1\|941228_942569_+	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA
WP_011769158.1\|942571_943780_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
WP_011769159.1\|943772_944549_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_011769160.1\|944541_945174_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA
WP_011769161.1\|945179_945788_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA
WP_011769162.1\|945838_947062_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA
WP_011769163.1\|947171_948206_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_011769164.1\|948202_948427_+	(Na+)-NQR maturation NqrM	NA	NA	NA	NA
WP_011769165.1\|948520_948976_-	YaiI/YqxD family protein	NA	NA	NA	NA
WP_011769166.1\|949523_949730_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	5.6e-17	68.3
WP_011769167.1\|949879_950464_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.8e-28	39.5
WP_011769168.1\|951459_952689_+	cystathionine gamma-synthase family protein	NA	NA	NA	NA
WP_041765928.1\|954725_954953_+	hypothetical protein	NA	NA	NA	NA
WP_011769171.1\|955987_956389_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_011769172.1\|956378_956816_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_041765933.1\|958449_959712_+	hypothetical protein	NA	NA	NA	NA
WP_011769174.1\|959791_962350_+	polysaccharide export protein	NA	NA	NA	NA
WP_011769175.1\|962537_963461_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_011769176.1\|963630_964101_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_011769177.1\|964171_965623_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.3e-51	29.5
WP_011769178.1\|965841_966966_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_041765939.1\|967020_967368_+	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	5.8e-06	32.3
WP_011769179.1\|967496_968924_+	phosphomannomutase	NA	NA	NA	NA
WP_011769180.1\|969099_970227_+	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	4.8e-134	67.5
WP_011769181.1\|970559_971528_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	1.9e-83	47.6
WP_011769182.1\|971534_972500_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_011769183.1\|972524_973298_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011769184.1\|973301_974390_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	4.1e-13	24.0
WP_011769185.1\|974382_975696_+	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	1.0e-58	32.8
WP_011769186.1\|975736_976582_+	NAD-dependent epimerase/dehydratase	NA	NA	NA	NA
WP_011769187.1\|976581_977598_+	NAD-dependent epimerase/dehydratase family protein	A0A2H4UUK0	Bodo_saltans_virus	1.2e-27	29.4
WP_157035302.1\|977582_978926_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_011769189.1\|978918_979854_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.4e-08	30.5
WP_011769190.1\|982439_983399_+	hypothetical protein	NA	NA	NA	NA
WP_011769191.1\|983938_984697_+	hypothetical protein	NA	NA	NA	NA
WP_041765946.1\|984677_985361_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011769193.1\|985357_986095_+	glycosyl transferase	NA	NA	NA	NA
WP_011769194.1\|986438_987563_+\|transposase	ISAs1-like element ISPin4 family transposase	NA	NA	NA	NA
WP_083761718.1\|987767_987923_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011769195.1\|987919_988894_+	glycosyltransferase	NA	NA	NA	NA
WP_011769196.1\|988902_989940_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI8	Catovirus	1.5e-41	39.2
WP_011769197.1\|989940_990828_+	SDR family oxidoreductase	A0A167RG57	Powai_lake_megavirus	1.5e-26	31.8
WP_011769198.1\|990815_991943_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	1.8e-104	49.5
WP_011769199.1\|992013_993213_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011769200.1\|993739_994864_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1571948 : 1578314

Caulobacter_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011769656.1\|1571948_1572524_+	TerD family protein	K4JRX3	Caulobacter_phage	7.8e-32	41.8
WP_011769657.1\|1572609_1573215_+	tellurium resistance protein TerZ	A0A068EMC6	Bacillus_phage	3.7e-16	30.4
WP_011769658.1\|1573362_1573941_+	TerD family protein	K4JRX3	Caulobacter_phage	6.0e-32	42.8
WP_011769659.1\|1573990_1575082_+	sodium:calcium antiporter	A0A2D1GNI8	Pseudoalteromonas_phage	5.6e-63	42.0
WP_011769660.1\|1575367_1576450_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	1.2e-25	30.4
WP_011769661.1\|1576450_1577212_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_011769662.1\|1577204_1578314_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	4.7e-41	33.5

DBSCAN-SWA_4

1769731 : 1777320

Indivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011769814.1\|1769731_1771396_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.2e-37	27.1
WP_011769815.1\|1771645_1772911_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.8e-97	53.1
WP_011769816.1\|1773118_1773574_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011769817.1\|1773648_1774812_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.4e-48	34.7
WP_011769818.1\|1774813_1775476_+	riboflavin synthase	A0A1V0SE20	Indivirus	7.7e-23	43.1
WP_011769819.1\|1775665_1776772_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.3e-56	36.7
WP_011769820.1\|1776852_1777320_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-29	48.3

DBSCAN-SWA_5

3014028 : 3060875

Vibrio_phage(28.57%)

integrase,transposase

attL 3009333:3009347|attR 3069803:3069817

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3009333:3009347	attL	NA	NA	NA	NA
WP_011770754.1\|3014028_3015273_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	8.5e-108	49.0
WP_011770755.1\|3015301_3015952_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A0R6PD37	Moraxella_phage	6.4e-06	23.0
WP_011770756.1\|3016666_3017563_+	WYL domain-containing protein	NA	NA	NA	NA
WP_011770757.1\|3017844_3018372_-	hypothetical protein	NA	NA	NA	NA
WP_011770758.1\|3018426_3018816_-	hypothetical protein	NA	NA	NA	NA
WP_011770759.1\|3018882_3019842_+\|transposase	IS1595-like element ISPin1 family transposase	NA	NA	NA	NA
WP_011770760.1\|3019794_3020787_-	hypothetical protein	NA	NA	NA	NA
WP_011770761.1\|3020796_3021468_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_011770762.1\|3021958_3022711_-	hypothetical protein	NA	NA	NA	NA
WP_011770763.1\|3023029_3023323_-	hypothetical protein	NA	NA	NA	NA
WP_041766478.1\|3023611_3023965_+	hypothetical protein	NA	NA	NA	NA
WP_011770764.1\|3024106_3024787_-	hypothetical protein	NA	NA	NA	NA
WP_011770765.1\|3025101_3025611_-	hypothetical protein	NA	NA	NA	NA
WP_083761793.1\|3025844_3027596_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.6e-67	45.5
WP_011770767.1\|3029482_3030340_+	WYL domain-containing protein	NA	NA	NA	NA
WP_157035366.1\|3030601_3031819_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.8e-65	43.8
WP_011770769.1\|3031697_3032609_-	hypothetical protein	A0A1B0VML8	Pseudomonas_phage	8.1e-23	37.1
WP_011770770.1\|3032820_3033588_-	Rha family transcriptional regulator	A0A2I7RX10	Vibrio_phage	5.6e-25	31.7
WP_011770771.1\|3033584_3033848_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_041766479.1\|3034289_3034988_-	hypothetical protein	NA	NA	NA	NA
WP_011770773.1\|3035537_3036299_-	hypothetical protein	NA	NA	NA	NA
WP_157035367.1\|3036748_3036907_-	hypothetical protein	NA	NA	NA	NA
WP_011770774.1\|3038100_3041133_-	type III restriction enzyme, res subunit	A0A2K5B2C2	Erysipelothrix_phage	3.6e-136	33.0
WP_011770775.1\|3041143_3043120_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	4.7e-92	33.1
WP_011770776.1\|3045361_3046180_-	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_011770777.1\|3046172_3049436_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	8.5e-232	42.5
WP_041766482.1\|3049463_3049703_-	hypothetical protein	NA	NA	NA	NA
WP_041766483.1\|3050161_3051799_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.6e-183	66.4
WP_011770780.1\|3051864_3052155_-	co-chaperone GroES	A0A1S6UB38	Serratia_phage	4.5e-12	43.4
WP_011770782.1\|3053580_3054807_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.6e-101	46.8
WP_049752983.1\|3054906_3055089_-	hypothetical protein	NA	NA	NA	NA
WP_049752984.1\|3055173_3055401_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	8.4e-06	35.6
WP_011770784.1\|3056341_3057103_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_083761766.1\|3057403_3057637_-	hypothetical protein	NA	NA	NA	NA
WP_011770785.1\|3057890_3058592_+	hypothetical protein	NA	NA	NA	NA
WP_041766484.1\|3059371_3059758_-	hypothetical protein	NA	NA	NA	NA
WP_049752985.1\|3059845_3060145_-	hypothetical protein	NA	NA	NA	NA
WP_083761767.1\|3060563_3060875_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	4.4e-13	47.0
3069803:3069817	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4278565 : 4286718

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011771694.1\|4278565_4281166_-	methyltransferase domain-containing protein	H2BCQ7	Synechococcus_phage	1.5e-37	45.1
WP_011771695.1\|4281175_4282498_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.0e-15	25.5
WP_011771696.1\|4282487_4283303_-	ABC transporter permease	NA	NA	NA	NA
WP_011771697.1\|4283295_4283853_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-57	61.1
WP_011771698.1\|4283868_4284753_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.6e-36	37.1
WP_011771699.1\|4284757_4285639_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.1e-105	64.8
WP_011771700.1\|4285635_4286718_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.0e-101	55.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008709

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection