CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	0 crisprs	NA	0	0
NC_008787	Campylobacter jejuni subsp. jejuni 81-176, complete sequence	0 crisprs	DEDDh	0	1
NC_008790	Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence	1 crisprs	NA	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1343638 : 1350533

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002869406.1\|1343638_1344313_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	6.0e-07	26.1
WP_002860371.1\|1344300_1344906_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_002860370.1\|1344893_1345913_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	7.1e-60	40.5
WP_002869407.1\|1345987_1346926_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.8e-73	46.3
WP_002869408.1\|1346949_1347984_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	4.7e-144	73.4
WP_002869409.1\|1347992_1349051_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.4e-79	43.8
WP_002860364.1\|1349987_1350533_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	1.7e-15	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_008790

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CRISPR-Cas detection and classification

Crispr_ID: NC_008790_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008790_1

17243-17441

Orphan

Consensus_repeat	Method
TATTACATTTAAGTCAATTTTATTTGAAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_008790_1

>merge|NC_008790|1|17243-17441|CRISPRCasFinder
TATTACATTTAAGTCAATTGTTTTTTTAAAGTTCTTATTTTCCATATATTCTTTTCGTAAAAATGTCAAAAATTATTACATTTAAGTCAAAAATTATTACATTTAAGTCAATTTTATTTGAAAATAAGAGGAGTATTTAATAATTTTTGTTGACTTTAATGTAAGTGTATATTACATTTAAGTCAATTTTATTTGAAAA

>NC_008790|1|1|17243-17441|CRISPRCasFinder
TATTACATTTAAGTCAATTGTTTTTTTAAA	GTTCTTATTTTCCATATATTCTTTTCGTAAAAATGTCAAAAAT
TATTACATTTAAGTCAAAAATTATTACATT	TAAGTCAATTTTATTTGAAAATAAGAGGAGTATTTAATAATTTTTGTTGACTTTAATGTAAGTGTA
TATTACATTTAAGTCAATTTTATTTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008790.1\|WP_002842869.1\|24984_25650_+\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_011187235.1\|17977_19771_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NC_008790.1\|WP_011271768.1\|21642_24411_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NC_008790.1\|WP_002826068.1\|13604_14216_+\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_002835056.1\|17770_17974_+\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|224638
NC_008790.1\|WP_011271766.1\|10424_11129_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NC_008790.1\|WP_002809051.1\|20504_20882_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NC_008790.1\|WP_011187236.1\|21366_21630_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_008790.1\|WP_002809052.1\|20872_21196_-\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_011187230.1\|4604_10403_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226993
NC_008790.1\|WP_002779777.1\|12542_13094_-\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_002790346.1\|19893_20508_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|184041
NC_008790.1\|WP_002809140.1\|13294_13576_+\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_002844160.1\|16810_17068_-\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_011187233.1\|14991_16218_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NC_008790.1\|WP_011271769.1\|24421_24988_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_008790.1\|WP_002818418.1\|17559_17778_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_008790.1\|WP_011187234.1\|16325_16589_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NC_008790.1\|WP_002804272.1\|14219_14873_+\|hypothetical-protein	unknown	unknown	unknown
NC_008790.1\|WP_011187232.1\|11154_12543_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497

Protein	Function_ID	Function_description	E-value
NC_008790.1\|WP_002790346.1\|19893_20508_-\|recombinase-family-protein	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	4.15385e-39
NC_008790.1\|WP_011187235.1\|17977_19771_+\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	3.65493e-13
NC_008790.1\|WP_011271768.1\|21642_24411_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_008790.1\|WP_011187233.1\|14991_16218_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.90731e-28
NC_008790.1\|WP_002835056.1\|17770_17974_+\|addiction-module-toxin,-HicA-family	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	3.54531e-13
NC_008790.1\|WP_002809051.1\|20504_20882_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NC_008790.1\|WP_011271769.1\|24421_24988_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	8.15405e-37
NC_008790.1\|WP_002818418.1\|17559_17778_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.28325e-11
NC_008790.1\|WP_011187236.1\|21366_21630_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	4.3615e-05
NC_008790.1\|WP_011187230.1\|4604_10403_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.62366e-72
NC_008790.1\|WP_011187232.1\|11154_12543_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.31611e-05

>NC_008790.1|WP_002844160.1|16810_17068_-|hypothetical-protein
MCKIIKYLDYTKLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGITGLFHTCKGLRKYKEILKKV
>NC_008790.1|WP_011187234.1|16325_16589_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYKANYSKSFQKPRESAMEFFKNNK
>NC_008790.1|WP_011187233.1|14991_16218_+|hypothetical-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NC_008790.1|WP_002804272.1|14219_14873_+|hypothetical-protein
MNNTINFNELFSQIRLSSYNNDIVKHYDNLKCVGKITPKLATLEIILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTIIHLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC
>NC_008790.1|WP_002826068.1|13604_14216_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NC_008790.1|WP_002809140.1|13294_13576_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NC_008790.1|WP_002779777.1|12542_13094_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NC_008790.1|WP_011187232.1|11154_12543_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDIYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVIKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGKRGRTDNSLRWTSARNNEITRNG
>NC_008790.1|WP_011271766.1|10424_11129_-|GNAT-family-N-acetyltransferase
MKQEIYTSKFYISKRNGKEVCFKLDFEIKAFEENQKFYYVEIYAIIDYQYLKNEIAVIPNTNKNRNHWILRYDFNSWNFHSSIMLHSDYRSLGIGTFVINKMLEIALNYIPTARLSGKLSAVDEVKLENHIRRDKLYKNLGFVFNENNIGFSINSISNLKIRKDFDYIQEVRIFDMCNQLAELQYLKAGNDKLLKIYKEDFYKEKSKNDTLRARIKLMSFVLIALAVWIVYLLK
>NC_008790.1|WP_011187230.1|4604_10403_+|DEAD/DEAH-box-helicase-family-protein
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIATNTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQGTDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDPTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIGSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESNDLLVENQRKSLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKNNNIQKEYDIEI
>NC_008790.1|WP_002818418.1|17559_17778_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NC_008790.1|WP_002835056.1|17770_17974_+|addiction-module-toxin,-HicA-family
MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPHHIGEILHPKIIKQLFEIIEVAKD
>NC_008790.1|WP_011187235.1|17977_19771_+|AAA-family-ATPase
MPKRNTIDTITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NC_008790.1|WP_002790346.1|19893_20508_-|recombinase-family-protein
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDNGKSYDGLLWFIKKRKLKGS
>NC_008790.1|WP_002809051.1|20504_20882_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NC_008790.1|WP_002809052.1|20872_21196_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NC_008790.1|WP_011187236.1|21366_21630_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NC_008790.1|WP_011271768.1|21642_24411_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDIKNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NC_008790.1|WP_011271769.1|24421_24988_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIENILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFTGKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NC_008790.1|WP_002842869.1|24984_25650_+|hypothetical-protein
MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSKKESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSFPKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQAEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKEFKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008790_1	1.1\|17273\|43\|NC_008790\|CRISPRCasFinder	17273-17315	43	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	74954-74996	0	1.0
NC_008790_1	1.1\|17273\|43\|NC_008790\|CRISPRCasFinder	17273-17315	43	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	38423-38465	0	1.0
NC_008790_1	1.1\|17273\|43\|NC_008790\|CRISPRCasFinder	17273-17315	43	NC_006135	Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence	21203-21245	0	1.0
NC_008790_1	1.1\|17273\|43\|NC_008790\|CRISPRCasFinder	17273-17315	43	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	2835-2877	0	1.0
NC_008790_1	1.1\|17273\|43\|NC_008790\|CRISPRCasFinder	17273-17315	43	NZ_CP022471	Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence	17351-17393	0	1.0
NC_008790_1	1.2\|17346\|66\|NC_008790\|CRISPRCasFinder	17346-17411	66	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	74837-74902	6	0.909
NC_008790_1	1.2\|17346\|66\|NC_008790\|CRISPRCasFinder	17346-17411	66	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	38496-38561	6	0.909
NC_008790_1	1.2\|17346\|66\|NC_008790\|CRISPRCasFinder	17346-17411	66	NC_006135	Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence	21276-21341	6	0.909
NC_008790_1	1.2\|17346\|66\|NC_008790\|CRISPRCasFinder	17346-17411	66	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	2908-2973	6	0.909
NC_008790_1	1.2\|17346\|66\|NC_008790\|CRISPRCasFinder	17346-17411	66	NZ_CP022471	Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence	17424-17489	6	0.909

1. spacer 1.1|17273|43|NC_008790|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

2. spacer 1.1|17273|43|NC_008790|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

3. spacer 1.1|17273|43|NC_008790|CRISPRCasFinder matches to NC_006135 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

4. spacer 1.1|17273|43|NC_008790|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

5. spacer 1.1|17273|43|NC_008790|CRISPRCasFinder matches to NZ_CP022471 (Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence) position: , mismatch: 0, identity: 1.0

gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	CRISPR spacer
gttcttattttccatatattcttttcgtaaaaatgtcaaaaat	Protospacer
*******************************************

6. spacer 1.2|17346|66|NC_008790|CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

7. spacer 1.2|17346|66|NC_008790|CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

8. spacer 1.2|17346|66|NC_008790|CRISPRCasFinder matches to NC_006135 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

9. spacer 1.2|17346|66|NC_008790|CRISPRCasFinder matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

10. spacer 1.2|17346|66|NC_008790|CRISPRCasFinder matches to NZ_CP022471 (Campylobacter jejuni strain jejuni plasmid pRM1246_ERRC, complete sequence) position: , mismatch: 6, identity: 0.909

taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	CRISPR spacer
taagtcaattttatttgaaaataagaggagtatttaataatttttgttgactttaatgta	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008787

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008790

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection