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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_008789 Halorhodospira halophila SL1, complete sequence 5 crisprs DEDDh,DinG,cas1,cas2,csx1,csx16,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csa3,Cas14u_CAS-V,RT,WYL,cas3,Cas9_archaeal 0 3 6 0

Results visualization

1. NC_008789
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008789_1 695980-696726 TypeIII NA
10 spacers
cas1,cas2,csx1,csx16,cmr1gr7,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008789_2 711566-711671 TypeIII NA
1 spacers
cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008789_3 714988-715237 TypeIII NA
3 spacers
csx16,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008789_4 795393-795492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008789_5 1261384-1262117 Orphan NA
8 spacers
DinG

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_008789_1 1.7|696440|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR 696440-696473 34 NC_017791 Deinococcus gobiensis I-0 plasmid P2, complete sequence 12279-12312 6 0.824
NC_008789_3 3.2|715097|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR 715097-715130 34 MK801725 Gordonia phage Yago84, complete genome 8390-8423 8 0.765
NC_008789_3 3.2|715097|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR 715097-715130 34 MK059749 Mycobacterium phage CRB2, complete genome 10812-10845 8 0.765
NC_008789_3 3.3|715167|35|NC_008789|CRISPRCasFinder,CRT,PILER-CR 715167-715201 35 NC_009927 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence 182388-182422 9 0.743
NC_008789_1 1.7|696440|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR 696440-696473 34 NC_007959 Nitrobacter hamburgensis X14 plasmid 1, complete sequence 77202-77235 11 0.676

1. spacer 1.7|696440|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR matches to NC_017791 (Deinococcus gobiensis I-0 plasmid P2, complete sequence) position: , mismatch: 6, identity: 0.824

tcgtggacctcgggcggccgagcgatcccacttt	CRISPR spacer
tcgtggacctcgtgcggccgggcgatctcgtgtt	Protospacer
************ *******.******.*.. **

2. spacer 3.2|715097|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR matches to MK801725 (Gordonia phage Yago84, complete genome) position: , mismatch: 8, identity: 0.765

gagcttggcaaggagatcaaggaggaggagtccc	CRISPR spacer
gaggacggcaaggagatcaccgaggaggagtggt	Protospacer
***  .*************  **********  .

3. spacer 3.2|715097|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR matches to MK059749 (Mycobacterium phage CRB2, complete genome) position: , mismatch: 8, identity: 0.765

gagcttggcaaggagatcaaggaggaggagtccc	CRISPR spacer
gagaacggcaaggagatcaccgaggaggagtggt	Protospacer
***  .*************  **********  .

4. spacer 3.3|715167|35|NC_008789|CRISPRCasFinder,CRT,PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 9, identity: 0.743

aagggacactccggaaagagtggccc---cgttgggag	CRISPR spacer
aagggacaccccgtaaagagtggcccatacaccga---	Protospacer
*********.*** ************   *...*.   

5. spacer 1.7|696440|34|NC_008789|CRISPRCasFinder,CRT,PILER-CR matches to NC_007959 (Nitrobacter hamburgensis X14 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

tcgtggacctcgggcggccgagcgatcccacttt	CRISPR spacer
aaggccgccttgggcggccgagcgatccaacggg	Protospacer
  *   .***.***************** **   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 694910 : 747488 51 Enterobacteria_phage(28.57%) protease,integrase,transposase attL 689589:689607|attR 729141:729159
DBSCAN-SWA_2 800620 : 851781 50 Moumouvirus(14.29%) integrase,tRNA,transposase attL 807205:807221|attR 855747:855763
DBSCAN-SWA_3 858802 : 903871 50 Catovirus(33.33%) protease,integrase,holin,transposase attL 857882:857897|attR 901038:901053
DBSCAN-SWA_4 1386995 : 1414927 25 Staphylococcus_prophage(11.11%) tRNA,transposase NA
DBSCAN-SWA_5 1800659 : 1812965 9 Tupanvirus(16.67%) tRNA NA
DBSCAN-SWA_6 2529403 : 2538231 10 Bacillus_virus(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage