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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_008835 Burkholderia mallei NCTC 10229 chromosome II, complete sequence 1 crisprs csa3,cas3 0 0 135 0
NC_008836 Burkholderia mallei NCTC 10229 chromosome I, complete sequence 0 crisprs DEDDh,csa3,WYL,cas3 0 0 10 0

Results visualization

1. NC_008835
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_008835_1 1385931-1386076 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7350 4 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_2 15149 : 16613 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_3 20209 : 30818 7 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_4 37643 : 38120 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_5 41736 : 43116 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_6 56587 : 59349 3 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_7 69698 : 71669 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_8 82724 : 84776 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_9 97256 : 98324 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_10 104989 : 106110 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_11 117295 : 118804 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_12 121913 : 123575 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_13 128256 : 130224 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_14 142229 : 143350 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_15 149084 : 155472 9 Lake_Baikal_phage(33.33%) NA NA
DBSCAN-SWA_16 163601 : 168895 4 Catovirus(50.0%) holin,transposase NA
DBSCAN-SWA_17 178629 : 185991 7 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_18 200343 : 201804 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_19 213225 : 216129 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_20 221929 : 228361 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_21 239088 : 243590 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_22 247368 : 248488 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_23 260711 : 262835 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_24 269292 : 270412 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_25 275600 : 276191 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 285049 : 305417 9 Tupanvirus(50.0%) transposase NA
DBSCAN-SWA_27 332167 : 332800 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_28 347921 : 348923 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_29 351959 : 353153 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_30 360151 : 360976 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_31 380533 : 386282 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_32 391475 : 393476 1 Bathycoccus_sp._RCC1105_virus(100.0%) protease NA
DBSCAN-SWA_33 405324 : 409310 5 Bacillus_phage(66.67%) transposase NA
DBSCAN-SWA_34 416471 : 418289 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_35 427254 : 427776 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_36 440683 : 442120 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_37 500444 : 501665 1 Burkholderia_phage(100.0%) transposase NA
DBSCAN-SWA_38 514066 : 516336 2 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_39 522970 : 523738 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_40 535833 : 538620 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_41 561607 : 563593 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_42 571390 : 577935 8 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_43 593294 : 594887 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_44 598041 : 598608 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_45 606683 : 609528 3 Burkholderia_virus(66.67%) transposase NA
DBSCAN-SWA_46 631010 : 631808 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_47 639510 : 647151 9 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_48 660196 : 661546 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_49 675654 : 676774 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_50 685420 : 687028 1 Pike_perch_iridovirus(100.0%) NA NA
DBSCAN-SWA_51 727037 : 730637 3 Ostreococcus_tauri_virus(50.0%) NA NA
DBSCAN-SWA_52 734277 : 735132 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_53 743543 : 747245 3 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_54 755517 : 798993 36 Agrobacterium_phage(20.0%) plate,transposase NA
DBSCAN-SWA_55 842456 : 844523 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_56 859599 : 863643 5 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_57 869395 : 870952 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_58 900837 : 901635 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_59 915361 : 917008 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_60 924436 : 967459 34 Leptospira_phage(33.33%) holin,transposase NA
DBSCAN-SWA_61 984158 : 989626 6 Acinetobacter_phage(60.0%) NA NA
DBSCAN-SWA_62 1003834 : 1012280 8 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_63 1017473 : 1018594 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_64 1048105 : 1052216 4 Aeromonas_phage(50.0%) NA NA
DBSCAN-SWA_65 1055557 : 1057222 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_66 1125750 : 1130036 4 Euproctis_pseudoconspersa_nucleopolyhedrovirus(50.0%) transposase NA
DBSCAN-SWA_67 1133175 : 1137184 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_68 1142999 : 1144463 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_69 1151941 : 1153459 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_70 1158989 : 1160033 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_71 1169167 : 1169986 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_72 1192232 : 1195418 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_73 1199907 : 1200603 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_74 1204720 : 1206334 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_75 1220162 : 1221791 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_76 1240240 : 1241536 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_77 1255631 : 1308390 44 Organic_Lake_phycodnavirus(25.0%) plate,transposase NA
DBSCAN-SWA_78 1328503 : 1332320 4 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_79 1336962 : 1340453 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_80 1348241 : 1349996 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_81 1353932 : 1360068 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_82 1370058 : 1371459 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_83 1388201 : 1389986 1 Roseobacter_phage(100.0%) NA NA
DBSCAN-SWA_84 1399296 : 1401102 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_85 1411198 : 1414135 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_86 1436999 : 1444054 6 Burkholderia_phage(33.33%) transposase NA
DBSCAN-SWA_87 1450394 : 1456725 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_88 1470403 : 1473552 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_89 1479883 : 1481771 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_90 1485804 : 1491927 7 Lactobacillus_phage(25.0%) transposase NA
DBSCAN-SWA_91 1500176 : 1502420 2 Emiliania_huxleyi_virus(50.0%) NA NA
DBSCAN-SWA_92 1531480 : 1532601 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_93 1537001 : 1537730 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_94 1554474 : 1565068 8 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_95 1576971 : 1578091 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_96 1591374 : 1591824 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_97 1599705 : 1602055 2 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_98 1635380 : 1636961 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_99 1643132 : 1644809 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_100 1648124 : 1654500 5 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_101 1661304 : 1664886 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_102 1671886 : 1673676 3 Diadromus_pulchellus_ascovirus(50.0%) NA NA
DBSCAN-SWA_103 1688989 : 1690030 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_104 1693355 : 1745652 54 Leptospira_phage(25.0%) integrase,portal,transposase attL 1717799:1717818|attR 1735739:1735758
DBSCAN-SWA_105 1751694 : 1759456 6 Moraxella_phage(25.0%) tRNA NA
DBSCAN-SWA_106 1765469 : 1766972 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_107 1771860 : 1773980 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_108 1792922 : 1793846 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_109 1797239 : 1798361 1 unidentified_phage(100.0%) NA NA
DBSCAN-SWA_110 1814493 : 1866431 41 Leptospira_phage(22.22%) plate,transposase NA
DBSCAN-SWA_111 1884174 : 1885295 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_112 1905233 : 1906082 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_113 1910716 : 1917530 6 Mollivirus(25.0%) NA NA
DBSCAN-SWA_114 1926009 : 1928555 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_115 1941230 : 1943141 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_116 1953760 : 1955686 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_117 1966809 : 1967808 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_118 1983019 : 2005270 8 Tupanvirus(40.0%) transposase NA
DBSCAN-SWA_119 2044970 : 2046770 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_120 2075981 : 2076764 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_121 2082015 : 2083623 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_122 2089517 : 2091107 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_123 2096178 : 2097498 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_124 2131748 : 2132312 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_125 2142321 : 2143442 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_126 2146997 : 2150208 2 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_127 2153936 : 2156051 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_128 2159878 : 2161195 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_129 2165832 : 2167377 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_130 2175586 : 2177281 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_131 2188528 : 2194005 3 Acanthamoeba_polyphaga_moumouvirus(50.0%) NA NA
DBSCAN-SWA_132 2203846 : 2205706 1 Hepacivirus(100.0%) NA NA
DBSCAN-SWA_133 2240225 : 2241368 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_134 2267932 : 2269053 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_135 2277976 : 2279074 1 Bacillus_virus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_008836
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 473400 : 517701 39 Leptospira_phage(33.33%) tRNA,coat,transposase NA
DBSCAN-SWA_2 870123 : 927812 56 Leptospira_phage(16.67%) protease,transposase NA
DBSCAN-SWA_3 962640 : 1027780 56 Leptospira_phage(23.08%) integrase,transposase attL 978619:978678|attR 1026631:1027828
DBSCAN-SWA_4 1032024 : 1068746 35 Streptococcus_phage(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_5 1114656 : 1123893 7 unidentified_phage(16.67%) NA NA
DBSCAN-SWA_6 1744768 : 1789220 40 Leptospira_phage(20.0%) holin,plate,transposase NA
DBSCAN-SWA_7 1854116 : 1859041 6 Burkholderia_phage(33.33%) terminase,portal,transposase,protease NA
DBSCAN-SWA_8 2191606 : 2262686 59 Leptospira_phage(25.0%) transposase,protease NA
DBSCAN-SWA_9 2272747 : 2332031 55 Vibrio_phage(17.65%) tRNA,protease,portal,transposase NA
DBSCAN-SWA_10 3022100 : 3074292 50 Leptospira_phage(20.0%) protease,coat,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage