CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008825	Methylibium petroleiphilum PM1, complete sequence	2 crisprs	Cas9_archaeal,DinG,DEDDh,cas3,csa3,PD-DExK	0	0	3	0
NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	1 crisprs	Cas9_archaeal	0	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008826_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008826_1

107917-108082

Orphan

Consensus_repeat	Method
GCGTCCGCTGACCGTCGAGAGGC	PILER-CR

2 spacers

The CRISPR arrays of NC_008826_1

>merge|NC_008826|1|107917-108082|PILER-CR
GGGGCCGCTGACCGTCGAGAGGCGTCGTGTAGCGGTCCGGCGGTCGGGTCCTCTCCTGGGCCCACTGGGTCACCTGGGCCTTCTGCTGACCGTCGAGAGGCCGGGGTGCTGCTGCCGCCTGGTCGGCGTGGACATCCCTGGTGGCGTCCGCTGACCGTCGAGAGGC

>NC_008826|1|1|107917-108082|PILER-CR
GGGGCCGCTGACCGTCGAGAGGC	GTCGTGTAGCGGTCCGGCGGTCGGGTCCTCTCCTGGGCCCACTGGGTCACCTGGG
CCTTCTGCTGACCGTCGAGAGGC	CGGGGTGCTGCTGCCGCCTGGTCGGCGTGGACATCCCTGGTG
GCGTCCGCTGACCGTCGAGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008826.1\|WP_011831511.1\|104852_105866_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_008826.1\|WP_148211105.1\|104233_104785_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NC_008826.1\|WP_011831513.1\|109060_109396_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_041930476.1\|111946_112720_+\|4,5-DOPA-dioxygenase-extradiol	unknown	unknown	gnl\|CDD\|153375
NC_008826.1\|WP_011831515.1\|111362_111827_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831522.1\|115037_115448_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831509.1\|103680_104154_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_008826.1\|WP_011831504.1\|100055_100274_-\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831505.1\|100379_101297_-\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831518.1\|113245_113611_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831507.1\|101842_102469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|168322
NC_008826.1\|WP_011831520.1\|113782_114214_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831519.1\|113607_113778_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831512.1\|106139_106712_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831517.1\|112760_113213_+\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_041930359.1\|103349_103661_-\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_041930358.1\|102417_103353_-\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_011831506.1\|101316_101631_-\|hypothetical-protein	unknown	unknown	unknown
NC_008826.1\|WP_148211106.1\|109425_111312_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|334157
NC_008826.1\|WP_011831521.1\|114225_115014_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008826.1\|WP_011831511.1\|104852_105866_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.08838e-53
NC_008826.1\|WP_148211105.1\|104233_104785_-\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	4.83967e-05
NC_008826.1\|WP_011831507.1\|101842_102469_+\|hypothetical-protein	gnl\|CDD\|168322	PRK05973, PRK05973, replicative DNA helicase; Provisional.	1.40962e-05
NC_008826.1\|WP_041930476.1\|111946_112720_+\|4,5-DOPA-dioxygenase-extradiol	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	7.22222e-110
NC_008826.1\|WP_011831509.1\|103680_104154_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.6809e-13
NC_008826.1\|WP_148211106.1\|109425_111312_+\|ATP-dependent-helicase	gnl\|CDD\|334157	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyze ATP dependent unwinding of double stranded DNA to single stranded DNA. Some members have large insertions near to the carboxy-terminus relative to other members of the family.	2.23809e-10

>NC_008826.1|WP_011831512.1|106139_106712_+|hypothetical-protein
MAPVDPPEIAEKEDIHSILIKMAMETATSVANQVVVVDEALADLDQLLYRLQPKMTGRIRIQWWRKEKKDRYKRAVPAYWYWAKGSKSWLADDHPIPGLRRRGKTQGKFHRNREVMKVLLGVAQDLLEMRTKLINQIAAFSADTKKVVGPAGRKAGASKQTLRRIESEVDAGKHFDWSLEGTSSDKPDLT
>NC_008826.1|WP_011831511.1|104852_105866_-|ParM/StbA-family-protein
MLTKTIIGLDVGRSAVKVVAFANGLYYRLTFPSLVSPAFPINDEGTAARAELETVEVLGKRYFTGDTARLQGGVNMSVGLSHDWTNGPEYLALVASTMKRLAALGVPGLDSPYIVLGTPASLFGRQKEALAQRTQAVVAAEMKVLPQPMGAYCNFFMDARGVPIKDRQKRPDGKNRSWAVVEVGHYTTDFLLMREGNYIERAAVSCEGVHFAAENLVRILAAKDIQATPLTAEEALRTGVIVDFGERRIEAQVAEAVDHVVQKIMTMADSVLSNDVRSLDGVLLAGGGAPILAAGLQKKWPHTVLLENPRMAVADGFCRYGVGQMLRRAMAAEKATA
>NC_008826.1|WP_148211105.1|104233_104785_-|hypothetical-protein
MTLFEHQTPGVVEFFGRMPGRVESAFIRGLIYQWMLDNQDAPDFEERLARVVNGPGGRLLAMPIGGSQVMHRKKPGPKPGSRKPVATPTVDVPRAQIVMPVVDAPRQPVREQAAHHGAAVGAPLHQPAPAPVHAAPVPPPTAAPAPLDPSELPQPASAADAPTDAGAITDDAMDALAALDTMF
>NC_008826.1|WP_011831509.1|103680_104154_-|RDD-family-protein
MKTTATLPYAGLWRRIAAATFDGGLGLTISLGITFIFGVVFGTAGLYSAVAMSALLWWLYSAGMESSDLQATLGGRIFSTRVSSLEGGRIGFWRASLRQAVRIGAVLAVLAAEEFAGGRAASTVVFVLSVTAFAVAAALPRRQALFDLAAKTVVTTH
>NC_008826.1|WP_041930359.1|103349_103661_-|hypothetical-protein
MSIELIKSQHVDEPLPTRVTDYKLVNKQAGRGGTWLTLNLRVTTSLRIERVVAEITDMQPEVEADDAEQALDKLAEWMERAAAELRARGKPAVGVAIYPNGNP
>NC_008826.1|WP_041930358.1|102417_103353_-|hypothetical-protein
MITLLRPVAPSPRLVYSLSPHARKRLAERTTMSEQAMLDAFADCMAVQLNRAENHFEGCVYELFFSLPDKQFFVAVTKPLSQIRGGIVVTVLTAVQHESDRGPILPALLLQAVRNFTSDTEFEGVAAAARDRLSRLAETAEPGGEGSNHSALPVFSEAVASSTGLARGTLVRTAKILLDDAGYARYCAILAGQCPDSMRPNQVRVLVHYWDAQHNAQCLRLSNPKVPQQHLLDHGLAAVNRHPAFWTWLAGRFAALGIDPGLKIDKLEAYLSVPHKANETVELDLEATMVDDPAPYPTVDFSDSTPEPAAC
>NC_008826.1|WP_011831507.1|101842_102469_+|hypothetical-protein
MTKPARAPATATLVAKAKRAAKSIARSTGMSHTEALERAAADAGYSSWHELQRAHAAAAPAPELLVDPKLPRRFDQTPNEERSKAHLDAWWDRPFALRRPDGQYDVRCLDGGAWDRSTWYGLAPDLEAAKELAVKKLAAWRGFREAPVVSMTEGGEDLVVRMPQRPDQPMEILYRAKDHADAGRWLREHREAQQAAGSGVESEKSTVG
>NC_008826.1|WP_011831506.1|101316_101631_-|hypothetical-protein
MHVFQSTPKLVGNQQDKPLTYRPNTVPRIFIVDTAFGRTVKEYEGDIRSARRQALIEYGTRGYAGIQRATLDVLVEIKRCGGWMPAHVRPAVEEHERKLRGGAH
>NC_008826.1|WP_011831505.1|100379_101297_-|hypothetical-protein
MNESYEEALAEFLPPWATGRAKGWTDIGAQLRTKDGRRIGNAVLVGSEQQQGLTFYQVLTDVGTLVHFTERELEEMFHQPDYTMNVETHSGYRRAKGAPEIHRESGRTADELWLETGRLRSQLADLKADQKSKIESQRDRFEAMYAAEGRSVNQPMPDFKMLPSGVYADMAIRTAFYWFNRQQLPDGWHLGGYLQEVLAAREQQQPAGAPAEPESLDAWIDQLVARFGISDTDVCGAADLVKLAFDNLATKIGEPGWSPNQFAESLVEALVNDDSCLQAGADIAELKSVIEQRARAVETAALSEA
>NC_008826.1|WP_011831504.1|100055_100274_-|hypothetical-protein
MLNLQDYPARDHSYHLAHAAASKLLRDREIRAFSTSFNSATGRMIHVETEQGWDPDPMFQEFVEPGYASPSN
>NC_008826.1|WP_011831513.1|109060_109396_+|hypothetical-protein
MKTFASLTSAAVAALLAAFVGAIAGFFVGFVGVLAFGVTFASLPLFGVGGAALFGLVGAYRGYTRAADSAAVVDPAWAAEDVVTAGSDVFVAPDEPFTPVNHLWQDGSKGE
>NC_008826.1|WP_148211106.1|109425_111312_+|ATP-dependent-helicase
MTTLQLTPEQSLIVHSSVDVLLVQAFAGTGKTSTLIEYARANPHLRILYLAFSKAIQLEAAKRFPTNVTCKTTHGLAWRRSGALYKEAGKLGFINVRDLMQLFSVEAREARVVLTTLERFIQSADAKVQDAHVPSDIMNTAHRARAGQLAARAWDVMRDLQNSALKMTHDGYFKLFQLSNPDLSMECDVILGDEWQDTNPVTHALVSAQQCRKVFVGDSHQSIFAFRGAVNAMKQVKAEQVLRLTHSFRFGSGIAQLATKILAGLKGEKHPLVGRGRNESVFTVDRTRPYTVIARSNGTLFAETVALLGRVKFHLVGLEEDRDRNLTYAPFEKLVDVHYVLTHQGHLARDAFIRAFKSPAQLKDYAGAADDKELLMLVKIAEDYGRNVPALVSRIKAEVLRDGHDAHVTLTTAHRSKGLEWDQVVLCSDFEEFIGDKGDLRRATTQELVQEANLLYVAATRALRALEKNRQILEIEQLLAKANFELPKEQALPAPAAAPAKAPAAAAAPVAPRAEGLAATMHSAEEAARAAQPPVQLAGELPKLPHDFHKRALLEQVQHAILVVGLLDLGELAALLARTREDTARILGNLIAKGHISARLFAHEPAIAASATAAQTQAAAPQAAIDFL
>NC_008826.1|WP_011831515.1|111362_111827_+|hypothetical-protein
MTQPKTPITVFEKIRQQIELPGPAAAPGAAAAMFAEFNVPAFLETQAASMRTAGFRAAAELVEAGTHVSLSWVPQRDAAPDAPEARLDIRVVEGSNRPFRARFIYQAFDGQREVAGVCAQYMDAALLNRWFAHFTELCLTAQAQAAEHPAGAAA
>NC_008826.1|WP_041930476.1|111946_112720_+|4,5-DOPA-dioxygenase-extradiol
MPSIFIGHGSPMNAISRNSFTDTLAAWGKRLPRPRAIVVVSAHWLSRGATGVTSNPAPPTIHDFSGFPRELQEMTYPAKGDPRLAREIASLIRSQRGVPTTEWGLDHGTWTVLHHLFPGAPVPVLQVSIDYDQGAAFHLAIGRELAALREKGVLVVGSGNIVHNLRATDRGTPEGQIASRPWAAAFDEAVKAALSQRDDKALLAYENLDGAAMAVATPDHYWPFLYALGAADAGTPPATVFEGFHSGTLSMRCLQFG
>NC_008826.1|WP_011831517.1|112760_113213_+|hypothetical-protein
MTTVFEQILTQVDRAGTPPAEGAEARMAQDAKLFADAGVREFLTAQMEAMRAAGFRARVHSNDIGVANQVLEWHPAALGEMPARATATFDISSTGDKTVRFTAHLSYVNDEGQETQLFLSATYLDRALLERWFATFVDLCLTARRSRGTV
>NC_008826.1|WP_011831518.1|113245_113611_+|hypothetical-protein
MLPFTPDTALPARTDSRQWLRLLHKRLQALAAGAAGFVVVLEDGFDTLSVGAKQDDGTLDPLLVVSVAGGFLMTMSLLGEIAAADTCRLADAEGLARIEEQVVALIGLAGALRAEHAELAR
>NC_008826.1|WP_011831519.1|113607_113778_+|hypothetical-protein
MSGWEIAIALLVLAALVLTLRLIRRGGTRRLGAEDARDTDITSRVFDPRFRLDKDR
>NC_008826.1|WP_011831520.1|113782_114214_+|hypothetical-protein
MSKSTPKLLRVRPAGPDHQVVTVTSASKAYRRQPCPSCPWRVDATGTFPAEAFRHSAETAYDMSQHVFSCHESGQKKPATCAGFLLRGATHNLAARLGYLNGRYGHDVTDGGLDLHPSYAAMAIANGVLPDEPCLAACRGPND
>NC_008826.1|WP_011831521.1|114225_115014_+|hypothetical-protein
MPAPNALALTAAPRYFDQPAWRRLCTAACDTAARACGASDTVFTSLYSAAIDAALRDVPAAQQPLALAIARELGDYATAEEIARDRAEMLAQGWCTHGIDPNACPAGCGDLAAERDGAANEDVEQPAEEQKGADPHDLVLCWSFLQSKQWALEARGFAADLARRPAVEAGSGARLVFTWVPGECSPLTSRASREYALEISLPAGAGDVVARFAGCGLDCARTERRAGADADLDAILTQWFTEFQHATRMAHDVWFVHATGRA
>NC_008826.1|WP_011831522.1|115037_115448_+|hypothetical-protein
MPDFTDTLIACQQMSLLGADPAGAVEQAKSDFDLVGVAAHLTQLRIEMLEHGHPATLAAAEDCTSAKLTWRLPGAHHPRDRYTLAIEVAAGGATARFVGPARSTALILQTRNFNPDALHRWSATFIEWALTSREAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008826_1	1.1\|107940\|55\|NC_008826\|PILER-CR	107940-107994	55	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	107940-107994	0	1.0
NC_008826_1	1.2\|108018\|42\|NC_008826\|PILER-CR	108018-108059	42	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	108018-108059	0	1.0

1. spacer 1.1|107940|55|NC_008826|PILER-CR matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 0, identity: 1.0

gtcgtgtagcggtccggcggtcgggtcctctcctgggcccactgggtcacctggg	CRISPR spacer
gtcgtgtagcggtccggcggtcgggtcctctcctgggcccactgggtcacctggg	Protospacer
*******************************************************

2. spacer 1.2|108018|42|NC_008826|PILER-CR matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 0, identity: 1.0

cggggtgctgctgccgcctggtcggcgtggacatccctggtg	CRISPR spacer
cggggtgctgctgccgcctggtcggcgtggacatccctggtg	Protospacer
******************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

476023 : 557986

Acinetobacter_phage(30.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011831851.1\|476023_477115_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011831852.1\|477373_478678_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	7.8e-11	28.1
WP_011831853.1\|480092_481097_+	hypothetical protein	NA	NA	NA	NA
WP_011831855.1\|481667_482915_+	hypothetical protein	NA	NA	NA	NA
WP_011831856.1\|482951_483413_+	hypothetical protein	NA	NA	NA	NA
WP_011831857.1\|483434_483884_+	hypothetical protein	NA	NA	NA	NA
WP_011831858.1\|483984_484557_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_158304652.1\|484838_487130_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_112185765.1\|487204_487876_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011831861.1\|487995_488406_+	cobalamin B12-binding domain-containing protein	NA	NA	NA	NA
WP_011831862.1\|488427_489861_+	AMP-binding protein	NA	NA	NA	NA
WP_011831863.1\|489877_490861_+	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA
WP_011831864.1\|490847_492536_+	methylmalonyl-CoA mutase family protein	NA	NA	NA	NA
WP_128003303.1\|492564_492819_+	hypothetical protein	NA	NA	NA	NA
WP_011831866.1\|492849_493431_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_011831867.1\|493456_495217_+	thiamine pyrophosphate-binding protein	E5EQ70	Micromonas_sp._RCC1109_virus	1.2e-27	25.9
WP_011831868.1\|495213_496236_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_011831869.1\|496270_496828_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_011831870.1\|496879_497737_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_011831871.1\|497798_498257_-	transporter	NA	NA	NA	NA
WP_085984391.1\|498323_499516_-\|transposase	IS3-like element ISMpe1 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.5e-56	39.8
WP_049820972.1\|499576_499996_-	transporter	NA	NA	NA	NA
WP_011831874.1\|500444_501209_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_011831875.1\|501307_502321_-	oxidoreductase	NA	NA	NA	NA
WP_011831876.1\|502406_503819_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_011831877.1\|505221_506319_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_148211123.1\|506318_506759_+	HIT family protein	NA	NA	NA	NA
WP_049820974.1\|506781_509313_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	2.2e-70	35.7
WP_011831880.1\|509372_510266_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.3e-30	30.2
WP_041930431.1\|510285_510918_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_011831882.1\|511020_512277_-	AMP-binding protein	NA	NA	NA	NA
WP_011831883.1\|512292_513096_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-08	27.8
WP_011831884.1\|513127_514450_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041930432.1\|515611_516541_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_085984391.1\|520303_521496_-\|transposase	IS3-like element ISMpe1 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.5e-56	39.8
WP_158304635.1\|521524_521665_-	hypothetical protein	NA	NA	NA	NA
WP_041930433.1\|522630_522855_+	hypothetical protein	NA	NA	NA	NA
WP_011831891.1\|523103_523481_-	hypothetical protein	NA	NA	NA	NA
WP_011831892.1\|523736_525071_-	4-hydroxybutyrate CoA-transferase	NA	NA	NA	NA
WP_112187985.1\|525790_527455_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011831894.1\|527506_527992_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_011831896.1\|529942_532360_+	MMPL family transporter	NA	NA	NA	NA
WP_011831897.1\|532416_533784_+	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_041930435.1\|533786_534827_+	photosystem II stability/assembly factor-like protein	NA	NA	NA	NA
WP_085984391.1\|536260_537452_+\|transposase	IS3-like element ISMpe1 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.5e-56	39.8
WP_041930437.1\|538143_539523_+	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_148211124.1\|539834_540395_-	hypothetical protein	NA	NA	NA	NA
WP_011831901.1\|540606_541986_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_011831902.1\|542128_543979_-	hypothetical protein	NA	NA	NA	NA
WP_041930435.1\|544004_545045_-	photosystem II stability/assembly factor-like protein	NA	NA	NA	NA
WP_011831904.1\|545047_546415_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_011831905.1\|546473_548894_-	MMPL family transporter	NA	NA	NA	NA
WP_083768024.1\|549639_551193_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_112187925.1\|552730_555424_-	ATP-dependent transcriptional regulator	NA	NA	NA	NA
WP_193373406.1\|555561_555735_-	rubredoxin	NA	NA	NA	NA
WP_011831913.1\|555734_555926_-	rubredoxin	NA	NA	NA	NA
WP_158304653.1\|555985_556810_-	alpha/beta hydrolase fold domain-containing protein	A0A167RJ59	Powai_lake_megavirus	2.2e-35	37.3
WP_011827983.1\|557026_557986_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	4.5e-109	63.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_008825

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CRISPR-Cas detection and classification

Crispr_ID: NC_008825_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008825_1

163534-163690

Orphan

Consensus_repeat	Method
CTGCAACAAGGACGCCGGCGAGATGAAGGGCGACGAGCGCAAGGCCTTCATGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008825_1

>merge|NC_008825|1|163534-163690|CRISPRCasFinder
CTGCAACAAGGACGCCGGCGAGATGAAGGGCGACGAGCGCAAGGCCTTCATGAAGAAGTGCCTGTCCGCCAAGCCCGCCACCCAGCAGGACAAGATGAAGAGCTGCAACAAGGACGCCGGCGAGATGAAGGGTGACGAGCGCAAGGCCTTCATGAAG

>NC_008825|1|1|163534-163690|CRISPRCasFinder
CTGCAACAAGGACGCCGGCGAGATGAAGGGCGACGAGCGCAAGGCCTTCATGAAG	AAGTGCCTGTCCGCCAAGCCCGCCACCCAGCAGGACAAGATGAAGAG
CTGCAACAAGGACGCCGGCGAGATGAAGGGTGACGAGCGCAAGGCCTTCATGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008825.1\|WP_011827757.1\|163738_164968_-\|DUF3047-domain-containing-protein	unknown	unknown	gnl\|CDD\|378613
NC_008825.1\|WP_011827759.1\|166141_166852_+\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|319787
NC_008825.1\|WP_049820851.1\|171656_173663_+\|M13-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341056
NC_008825.1\|WP_011827760.1\|166877_168464_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NC_008825.1\|WP_011827747.1\|152198_153116_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NC_008825.1\|WP_011827753.1\|159471_160104_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225629
NC_008825.1\|WP_041929486.1\|170816_171563_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227648
NC_008825.1\|WP_011827755.1\|161931_163275_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_008825.1\|WP_049820732.1\|153651_154434_+\|DUF4399-domain-containing-protein	unknown	unknown	gnl\|CDD\|373020
NC_008825.1\|WP_011827750.1\|157293_158049_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NC_008825.1\|WP_011827752.1\|158767_159412_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NC_008825.1\|WP_011827758.1\|165117_166032_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_008825.1\|WP_011827762.1\|170262_170829_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171568
NC_008825.1\|WP_148210864.1\|158045_158660_-\|lipopolysaccharide-transport-periplasmic-protein-LptA	unknown	unknown	gnl\|CDD\|274384
NC_008825.1\|WP_011827749.1\|155770_157294_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_008825.1\|WP_011827754.1\|160115_161801_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_008825.1\|WP_011827765.1\|173718_174981_+\|geranylgeranyl-reductase-family-protein	unknown	unknown	gnl\|CDD\|273936
NC_008825.1\|WP_011827761.1\|168577_169915_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_008825.1\|WP_011827766.1\|175111_177430_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NC_008825.1\|WP_041929485.1\|153115_153625_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|226285

Protein	Function_ID	Function_description	E-value
NC_008825.1\|WP_011827757.1\|163738_164968_-\|DUF3047-domain-containing-protein	gnl\|CDD\|378613	pfam11249, DUF3047, Protein of unknown function (DUF3047). This bacterial family of proteins has no known function.	1.61424e-40
NC_008825.1\|WP_011827759.1\|166141_166852_+\|haloacid-dehalogenase-type-II	gnl\|CDD\|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.51811e-75
NC_008825.1\|WP_049820851.1\|171656_173663_+\|M13-family-metallopeptidase	gnl\|CDD\|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	0
NC_008825.1\|WP_011827760.1\|166877_168464_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NC_008825.1\|WP_011827747.1\|152198_153116_+\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.18879e-52
NC_008825.1\|WP_011827753.1\|159471_160104_-\|SPOR-domain-containing-protein	gnl\|CDD\|225629	COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning].	8.02711e-15
NC_008825.1\|WP_041929486.1\|170816_171563_+\|anti-sigma-factor	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	1.09322e-26
NC_008825.1\|WP_011827755.1\|161931_163275_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.00206e-82
NC_008825.1\|WP_049820732.1\|153651_154434_+\|DUF4399-domain-containing-protein	gnl\|CDD\|373020	pfam14347, DUF4399, Domain of unknown function (DUF4399). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 135 and 1079 amino acids in length.	4.59324e-33
NC_008825.1\|WP_011827750.1\|157293_158049_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	3.22594e-148
NC_008825.1\|WP_011827752.1\|158767_159412_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	2.44798e-75
NC_008825.1\|WP_011827758.1\|165117_166032_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.83449e-88
NC_008825.1\|WP_011827762.1\|170262_170829_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171568	PRK12537, PRK12537, RNA polymerase sigma factor; Provisional.	2.03252e-66
NC_008825.1\|WP_148210864.1\|158045_158660_-\|lipopolysaccharide-transport-periplasmic-protein-LptA	gnl\|CDD\|274384	TIGR03002, outer_YhbN_LptA, lipopolysaccharide transport periplasmic protein LptA. Members of this protein family include LptA (previously called YhbN). It was shown to be an essential protein in E. coli, implicated in cell envelope integrity, and to play a role in the delivery of LPS to the outer leaflet of the outer membrane. It works with LptB (formerly yhbG), a homolog of ABC transporter ATP-binding proteins, encoded by an adjacent gene. Numerous homologs in other Proteobacteria are found in a conserved location near lipopolysaccharide inner core biosynthesis genes. This family is related to organic solvent tolerance protein (OstA), though distantly. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	9.92794e-37
NC_008825.1\|WP_011827749.1\|155770_157294_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NC_008825.1\|WP_011827754.1\|160115_161801_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NC_008825.1\|WP_011827765.1\|173718_174981_+\|geranylgeranyl-reductase-family-protein	gnl\|CDD\|273936	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	9.10792e-42
NC_008825.1\|WP_011827761.1\|168577_169915_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.51692e-107
NC_008825.1\|WP_011827766.1\|175111_177430_+\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	1.62642e-39
NC_008825.1\|WP_041929485.1\|153115_153625_+\|TPM-domain-containing-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	3.1845e-23

>NC_008825.1|WP_011827755.1|161931_163275_+|protein-kinase
MSPSPASSDVLPERIGKYRVLRKLGEGATSEVFLCRDDFNERDVAVKRVRASALADVSDGALHARFFAAEAALVGRLQHPNVVQIFDAVPDPTEPYVVMEHVAGTTLRPFCRADQLLPLDQVVEIGFKCAMALGYVSRQGLIHRDVKPANLLASTNANGDIVDVKVSDFGSVLNLQADTTQVFRVGSLAYMSPEQLDGGTLDARADVYSLGAVLYHLIAGRPPFDASAQSVLMAQIYSAQPASLCGLRGGVEPALDAVIQRALAKRADDRYADWDEFAQALSALVANRQVPRGQVQGVLDSERFTLLRALEFFSQFGDVELWEVVHRCAWQRYPLGHLIYRRGEEGNTFHIIAEGAVDVYRDSQRVAHLGAGTSVGEMAYLAPNPELRRHSTDVTVVAPATMISFTPDSMARLSPGCRHLFDEAFIRVLVRRLHVAHEALAHPRRIA
>NC_008825.1|WP_011827754.1|160115_161801_-|arginine--tRNA-ligase
MIRAQQELLVALGDALAELAPEQPPIAAFESPKQAAHGDLAITSAMQLAKPLKRNPRELAQALIDALQRREAVQRWVAALEIAGPGFINLRLKDTTKQQIVAEVLASGTDFGRQPATSERALVEFVSANPTGPLHVGHGRQAALGDAICKLFETQGWQVTREFYYNDAGVQIGTLAASTQARLQGLKPGDAGWPESAYNGDYIADIAADFLARKTVKADDREFTASGDPADLDGIRQFAVAYLRHEQDLDLQAFGVRFDHYFLESSLYATGRVEATVGKLVAAGKTFEDGGALWLRTTDYGDDKDRVMKKSDGSYTYFVPDVAYHVNKWERGYHKVINIQGSDHHGTIARVRAGLQAADVGIPAGYPDYVLHKMVTVMRGGEEVKISKRAGSYVTLRDLIDWTGKDAVRFFLISRKADTEFVFDVDLALKKNDENPVYYVQYAHARICSVIVQWREQQAGDPATLAQADLARLVAPTEAALMLKLAAYPVMLSGAAESLAPHDVAFYLRDLAGAFHSYYAAERFLTDDPALSRARLALLAATAQVLRNGLAVLGVSAPDRM
>NC_008825.1|WP_011827753.1|159471_160104_-|SPOR-domain-containing-protein
MPFFPFSRRSSQHGGFIVGLIAGLLIGLALALGVALYVTKVPIPFINKVPQRTAEQDAAEAERNRNWDPNTPLHGKKPAPAASGAGVPVAPAASGPATGTARPAPDGRDPAAILGGGPARPGPDLSTTGASEAFVYFVQVGAYARTEEAEAQRAKLAIQGFESKITEREQSGRTMYRVRVGPFVQRAEAEKVKETLDGAGMVSALVRVQK
>NC_008825.1|WP_011827752.1|158767_159412_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MNRRDFTTLSLATTCVGLLPAFGHAQGGPVEGKDYVKLSQRQPTQDPKKLEVVEFFWYGCPHCHAFEPMLETWVKKLPPDITFRRLPVAFREVPFVLHQKLYFAIEALGLVDTLHRKVFTAMHVERNPLNTPEAIGDFVAKNGVDKAKFLDVMNSFSVQTKARQAAALSAGYKIDGTPAIGINGSYYTSGSLAGSNDRALAITDHLIAQIRKGG
>NC_008825.1|WP_148210864.1|158045_158660_-|lipopolysaccharide-transport-periplasmic-protein-LptA
MSAPTPYPASRCTLLAQPVCRAVLAVLGLALLPAFAAEKADRTQPLAFTADSARVDEVKQLNILSGNVEITKGSIVIRADRVEVRQSPEGYQSAVATGWPNKRAYFRQKRGSNDEYIEGEAERLEYDGRGDTVRLVNQAVLRRFRGSTLADEVAGNTISYDNVTEVFQVLGGPASAAAPGRVRGVLTPRENPASAPNSGAGTRP
>NC_008825.1|WP_011827750.1|157293_158049_-|LPS-export-ABC-transporter-ATP-binding-protein
MNTAMASRLEARGLQKSYGARKVVKDVHLAVAAGEVVGLLGPNGAGKTTSFYMIVGLVRADAGEIRIDGAPIERLPIHQRSRLGLSYLPQEASIFRKLTVEENIRAVLELQFDERGKAYTKARIDELLDGLLHDLSIDKLRDSPAPALSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVIEIQRIIGFLKSRGIGVLITDHNVRETLGICHRAYIISEGRVLAEGTPEQIVENADVRKVYLGEHFRM
>NC_008825.1|WP_011827749.1|155770_157294_-|RNA-polymerase-factor-sigma-54
MKPSLQVRFSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEVEEDAPTPFDAPVERATATERQADDAWEGSGSEVAADPEPVAVDAAEFGTTEREDWENGTEREDFDGIRETPGKAGNNDSDEFDPMERSSAGVSLQDHLRDQLRGMRLSDEDRGAVMVLIESLDEDGYLADPLEEIAQRLAGDEDDIAVEELLDRLRCALKWLHNLEPLGVGARDLSECLTLQLRAGPRCEAQMIAILICKYHLELLARRDGKKLMAATGADEELLKAAQALIVRCEPKPGRPFTKAEANIIVPDVIVQKAGRGWRVVLNPDVMPKLRINDLYAQAIKQQRGARTESGAGLSSRLQEARWFMKNILQRFDTIQRVSQAIVERQKAFFSHGAIAMKPLVLREIADELGLHESTISRVTTAKYMSTPYGTFELKYFFGSSLNTEAGGNASSTAVRALIKQLVSAEDAKKPLSDSQLSSMLEEQGIQVARRTVAKYREALKIAPANLRRTMM
>NC_008825.1|WP_049820732.1|153651_154434_+|DUF4399-domain-containing-protein
MTSTMRSCFAWFAAALLAAPALAADHPWLSSPLRTQQPETYFTNLRDGDSIETPFVLKFGLSRYGLAPIVKPVDGAGHHHLLVNRDLPLDFTQPLPFNDQYIHFGKGQMETVLTFVPGTYTLRLLLADHKHIPYFVYSKPMKITVTKKNDDVDPKTLIQPGVAILEPRSGEPLRTPFRVRLHASGLNVGHVDIQDKGVGHFRLVAERAGAPTERIDLVKGLTEVWLAPPPGTYKFRVELLQNADQQVMATSAPVEIEVPR
>NC_008825.1|WP_041929485.1|153115_153625_+|TPM-domain-containing-protein
MMDRLIRLLRHCWLDEDDARRALGPVALERIEQRVRASEAAHSGEIRVCVEAGLPLGYLWRNVDAHDRALSLFGKLRVWDTEHNNGVLIYLLLADHRIEIVADRGLTRHVDAAGWQAIVDGMGAAFRERRFEDGLHAAIDAVDAVLRQHFPAARGDGNPNELPDTPVLR
>NC_008825.1|WP_011827747.1|152198_153116_+|TPM-domain-containing-protein
MRHGWRRWLASLALALLVGPWSASSAQDLRPVPVLSASVIDQTGTLTRAQVSALEAKLAAFEREAGSQLVVLIVATTQPEDIAAYAQRVGESWKIGRREVGDGLIVLVAKDDRKVRIEVAKALEGAVPDLAARQIIDRALTPAFRAGDFAGGLNAAVDQLAARIRGEALPAPGSVSKAPQSGAQWQDFAMFFLLAVPIAGAVLTGVLGRKLGTLATSVGAGGLAWAVSASLLIGGAAALVALVLVGVLGLGAARRRGLDTGGHGVPPIIWGGGGSSGGGWGGGGGGGFSSGGGGDFGGGGASGDW
>NC_008825.1|WP_011827757.1|163738_164968_-|DUF3047-domain-containing-protein
MTLPLPAARRSLLALALWAAGIAAAVAATATAAPPPPSAVDHGAFETAVRQAVAPQAGQAIVGLKVLHLSGDVGPWLDTGLALLPGDRVTLLKSGRVWWSRAYALSLDAPMAVWSRIGDQGPIFRGERATDTVTADRAGTLQLKLYPGLRWLDETGRYAGEPAAANPDAGGGVSVALLQWRAGVHIGSELQRLAALPTVVGPLAAAEVQRLGGGTTPPPDDWHYLWELGPAEIFTEVEHPTGPGHPPRAIRLHTRDDVGILQKDTPFDLTPDTVLRWRWKAERLPARAPENQVPTHDYMSIAVEFDDGRDLTFLWSHSLPVGEIFACPLPAWKDRETHVVTRSGTADLGRWVEESVNLHALYRRAIGDRVPARVTRVWLIGVSLFGHGEGLSEFGQIVLQDGARRLEVY
>NC_008825.1|WP_011827758.1|165117_166032_-|LysR-family-transcriptional-regulator
MDRLKQIESFAAVATKGSLTAAAGAEGVAPAVIGRRIDALEERLGVKLLVRTTRRITLTHEGSAFLEDAQRLLTDLANAEASVSAGGVKASGHLRLTAPAGFGRRHVAPLVPRFAEAHRDVSVSLNLSDRVVDIVNEGYDCAVRVGDLPDSSLVSLRLADNRRLCVAAPAYLQRAGTPQHPGELGRHQCLTLSSNASQARGWAFSVDGELTHLRPSGRYDCSDGQVLHDWCLAGHGIAWRSTWEVEQEVASGALVTLLDDFAAPPNGIYAVFPQRKHLPLRVRLWIDFLKHTYGDSTYWSPAMP
>NC_008825.1|WP_011827759.1|166141_166852_+|haloacid-dehalogenase-type-II
MKSPKPSLSVQAVLFDAYGTLFDVYSVGTLAEQLFPGQGEALAVLWRDKQIEYTRLVSMSQRYRPFWELTRAGLRYACARLQLDLTPERETQLLNQYRHLGAFPENKAVLTALKARGVTTGILSNGDPEMLGIAVRSAGYVDDKGQGLLDHVLSVESVQRFKTDPAAYALGPQALGIPARQILFVSSNGWDAIGATWYGYCTLWVNRFKLPLEALDTEPTRTGSSLRDVLDFFPKT
>NC_008825.1|WP_011827760.1|166877_168464_+|malate-synthase-A
MTTLQLPAGLQINAAILPGFETILTPAALELVAKLHRTFEPRRQELLAARVARVKRLDAGERPDFLPETKAIREGDWKIAPIPKALECRRVEITGPVEAKMVINAFNSGADSYMTDFEDSNSPVWANQIQGQINLYKAIRRTLTLGQAGKTYKLNDKIATLQVRPRGWHLDEKHVLVDGQRVSGGIFDFALFLFHNAKEQIERGAGPFFYLPKMESHLEARLWNDIFIAAQKEIGLPQGTIKATVLIETILAAFEMDEILYELREHSAGLNAGRWDYIFSCIKKFKNDRDFCLADRAKVTMTAPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMAGIIKDKRRDANDGYDGGWVAHPGLVESAMKEFVDVLGDRPNQIERQKPYTHITAAQLLEFAPEAPITEAGLRMNINVGIYYLASWLAGNGCVPIYNLMEDAATAEISRSQVWQWIRSPKGVLADGRKVTADMVRKMVAEELKGIKDAGYEGQTVDRAAEIFEQMSTQDAFAEFLTLPLYEEI
>NC_008825.1|WP_011827761.1|168577_169915_+|NAD(P)/FAD-dependent-oxidoreductase
MPDEPCTRILIVGAGFAGTQLVRSLHRRLPPGVETTLLSDESYTTFNPMLPEAVGASVFPEQVVVPVREMTRQGGACRFIMGSVTQVDLTAGRLVCRTLAGERELAYDHLVFAVGNRARLDLLPGMAEHALPLKTVGDAMHIRNTVLRRLACIELEDDASARRALGHFVVVGGGFSGVEVAGELVDCLASIRRYYPRVAADELRVTVLQGLDRLLPELSPRLGVAALNSLRERGVDVRLMARATCITADGVQLGDGEFIEGRTVIGTIGTAANPLLARLGLPLSGGRVVVAGDLSVPGYPGLWAVGDCACVPNALDGSTAPPTAQFAVREAQHLARNLGAVVTGAPTTAFRYRSRGMMASIGHLKGVAEVAGLPLTGWPAWLVWRAYYLSQMPSFGRRLRIFFEWFWGMFYPPDITHLRFTRSAELGSDEERRQREASATAVATV
>NC_008825.1|WP_011827762.1|170262_170829_+|sigma-70-family-RNA-polymerase-sigma-factor
MSSSPPRRTADPFDYESALEACARGERFALRALYEREARWLLGVALRIVRDRDMAHDVLQDAFLQVWQRASSYQRALGSARGWIYTVVRHRALDEVRRVRRETPVGDELEALADQHAASNAVHELPHADAASLSRCMETLDERKRDCIVYAFVEGYTHEQIAQQTATPVGTVKSWIRRGLLSLKECLS
>NC_008825.1|WP_041929486.1|170816_171563_+|anti-sigma-factor
MPVVSLDDPHERSATAGEYVLGTLGASERAEFQRALGEDAALQAEVYAWQDRLLGLAGRVAPAEPSAGLWPAIEARLRSGPATAAEIPTRAAALPAANDPAWRRLRRWQWTSGLAIAASLVLATLLVLRAPAPADAPRYLAVLQAPGSNTTGWVVEATAGGQLRLVPVGTTEAVPPGKALQFWTKAEGAAGPTSLGLVRAGQVTELPVATLPTLEARQLFELTLEPETGSPIGRPTGPILFVGRSVRL
>NC_008825.1|WP_049820851.1|171656_173663_+|M13-family-metallopeptidase
MFGPESAAGQAEPGRGAAASGIEQSCFDRSVRAQDDLFRHVNGGWLKHTAIPADRASTGAFMQIHDRIQDQLLALIDEASAEGQDGEARQIGDLYASFMDEAAIEARGLAPLQDELAAVAAINDRAQFGAWLADAVSAGLGVPLALHIGQDDRDSTRYVPFLSQGGLGLPDRDYYLLEDNARFGEVRAQYRAHMAAMLVLAGEPAAAAEAAAQAVLALETELAQAQWSRVENRDPVKTYNRCDFATLRALAPAIDWDGFAARTGLAGRAEGLVVGQPSYLAALSARLADAPLDAWKAYATLRVLYAYAPFLGRAIVDARFAFTGTVLRGTPENLPRWKRGVALVEGCLGEGLGQLYVARHFPPAHKARMEALVAQLLAAYRRNLDTLDWMGPATRAQAQAKLARLVTKIGYPVRWRDYRALEIRRDDVVGNVRRVRAFEHARQLARLGQPIDRDEWGMTPQTVNAYYNPSMNEIVFPASILQPPFFDADADDAVNYGAIGAVIGHEISHGFDDMGSQYDADGNLRDWWTAEDRARFAAKTSVLVAQYGAYEPLPGYPIDGALSLGENIADNAGLAIAFQAYQRSLGGRPAPVIDGLEGAQRFFYGFAQVWRGKQREAALIEQIKAGPHAPGEFRANGTVRNHPGFYATFGVQPGDALYLPEAQRVSVW
>NC_008825.1|WP_011827765.1|173718_174981_+|geranylgeranyl-reductase-family-protein
MHPAPLNRPLADLPPACEVLVVGAGPAGSAAARTLARAGVDVVLIDQQAFPRDKVCGDGLIPDAHRAMAKLGVLDEVMALAQPVKHLRCIAPRGGRIDVPGTLAVLPRRQLDLVLCRAAAEAGARMHAPLRFIEPLEDAGRVVGARLQGHDEARAPREIRARWVLLASGAVPQASLAAGVCDRRTPSGVALRGYVKNDAMVGRITELEVAWHRRLKPGYGWIFPCRDGVFNIGVGVAQSHRRDALGRHRMLDVNLREVFAAFTEVHAPARELMEGGTLLGELKGAPLRCSLEGARRSRPGLLVAGEAAGSTYALTGEGIGKALETGVLAAEAVIEGQRLSLGDDAVRARYEADLAALKPRFAIYEKASSVNERPWLVDLLVWSARRSPRRLQRMSGVLEETHTPANLVTARSFLRMVFER
>NC_008825.1|WP_011827766.1|175111_177430_+|AAA-family-ATPase
MARSAADARYVLSPGLADAPVLDRLCSQFVLTLALRHLGRFNLRRDWSALLSLTGRHLVWPPSVLRRLRDYLGQRVKAHEAWQGHAALSDLAFIARHGAWRGPYEEGTLFFYIDEYVKDAPKDLLAVLGATAEWLQRSVKKESTLVQKNIDALAGLLQLNPAERALLLYGTLARYQRDLRGLLVEFKVSSAQEAYAAIAQVAEVDERELAEALRTGSRLERIGMVENLISEHNITDLADLMKVSEQLPPVLMREYQGPSDLMAVFTKPATPTELTLSDFEFVAADAQMLVALLRNAVARHEPGVNVLLYGPPGTGKTELAKVAAQAAALELYEVESADRDGNSLSGRDRYRSLQMSQVFLKGSPNVALLFDEVEDVFPPLSNDAAQLMARLEQSDSGTSSSVGGKAWVNQILETNPVPVVWVTNRIEQIDPAFRRRFQYHLELNSPPPGAREAIVQRALEGVQAAPEFVARLAGRAGLTPAQIRTAVRFARLAGGDADAASDPVPAQVLIERQLGNADKALGLRGRDTAARPAVTRYDLGLLNVDSRFELPRIVEALQRRGCGTLCLYGPPGTGKTALAEHIAHALQRPLVAKRASDLVSKYVGETEQNLARMFDEAQREGAVLLLDEADSYLRSRQRAERNYEVTEVNEMLQGMERFGGVFVCTTNLFDELDEAALRRFSFKIRFKPLEAPQRERMFVAEALGGDAAALTAEQRARLAALDVLTPGDFAAVQRQVELLGDVFEPDGFLSQLEAEHRVKPGVRERRSIGFVR

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Crispr_ID: NC_008825_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008825_2

2463129-2463262

Orphan

Consensus_repeat	Method
GCGTACCGCGGCCACCCCCCGCGGGAGTCTCGGCCGGCTTGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008825_2

>merge|NC_008825|2|2463129-2463262|CRISPRCasFinder
GCGTACCGCGGCCACCCCCCGCGGGAGTCTCGGCCGGCTTGGGGCGGCCCGGCGCTCGGCCGATGAATACAGGTGAGCCCCCGGCCGCAGCGTACCGCGGCCACCCCCCGCGGGGGTCTCGGCCGGCTTGGGGC

>NC_008825|2|2|2463129-2463262|CRISPRCasFinder
GCGTACCGCGGCCACCCCCCGCGGGAGTCTCGGCCGGCTTGGGGC	GGCCCGGCGCTCGGCCGATGAATACAGGTGAGCCCCCGGCCGCA
GCGTACCGCGGCCACCCCCCGCGGGGGTCTCGGCCGGCTTGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008825.1\|WP_011829882.1\|2449763_2450753_-\|hypothetical-protein	unknown	unknown	unknown
NC_008825.1\|WP_036231169.1\|2451700_2452459_-\|hypothetical-protein	unknown	unknown	unknown
NC_008825.1\|WP_011829892.1\|2464503_2465436_+\|DUF2145-domain-containing-protein	unknown	unknown	gnl\|CDD\|227071
NC_008825.1\|WP_011829886.1\|2457640_2458831_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_008825.1\|WP_148210936.1\|2459027_2461181_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_008825.1\|WP_011829895.1\|2466637_2467468_-\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NC_008825.1\|WP_011829893.1\|2465495_2466080_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319936
NC_008825.1\|WP_011829889.1\|2462423_2463110_+\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235903
NC_008825.1\|WP_036231166.1\|2450801_2451659_-\|hypothetical-protein	unknown	unknown	unknown
NC_008825.1\|WP_011829888.1\|2461392_2462427_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|311044
NC_008825.1\|WP_158304616.1\|2452586_2454461_-\|hypothetical-protein	unknown	unknown	unknown
NC_008825.1\|WP_011829896.1\|2467464_2468523_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NC_008825.1\|WP_011829881.1\|2448675_2449755_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274666
NC_008825.1\|WP_011829898.1\|2470055_2470886_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_008825.1\|WP_148211050.1\|2464084_2464507_+\|hypothetical-protein	unknown	unknown	unknown
NC_008825.1\|WP_011829890.1\|2463334_2463973_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_008825.1\|WP_041930113.1\|2454549_2457273_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_008825.1\|WP_148211051.1\|2466041_2466608_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|274461
NC_008825.1\|WP_011829899.1\|2470882_2471893_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_008825.1\|WP_011829897.1\|2468524_2470051_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838

Protein	Function_ID	Function_description	E-value
NC_008825.1\|WP_011829898.1\|2470055_2470886_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.03834e-85
NC_008825.1\|WP_041930113.1\|2454549_2457273_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.94225e-31
NC_008825.1\|WP_011829886.1\|2457640_2458831_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_008825.1\|WP_148210936.1\|2459027_2461181_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.10961e-13
NC_008825.1\|WP_011829893.1\|2465495_2466080_+\|VOC-family-protein	gnl\|CDD\|319936	cd08348, BphC2-C3-RGP6_C_like, The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are one-domain dioxygenases, which form hexamers. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, its two domains do not belong to this subfamily.	6.20005e-41
NC_008825.1\|WP_011829895.1\|2466637_2467468_-\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	1.30208e-64
NC_008825.1\|WP_011829888.1\|2461392_2462427_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|311044	pfam06850, PHB_depo_C, PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.	3.85152e-121
NC_008825.1\|WP_148211051.1\|2466041_2466608_-\|histidine-phosphatase-family-protein	gnl\|CDD\|274461	TIGR03162, Adenosylcobalamin/alpha-ribazole_phosphatase, alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.44077e-24
NC_008825.1\|WP_011829889.1\|2462423_2463110_+\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235903	PRK06991, PRK06991, electron transport complex subunit RsxB.	6.459e-79
NC_008825.1\|WP_011829896.1\|2467464_2468523_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	9.9163e-144
NC_008825.1\|WP_011829881.1\|2448675_2449755_-\|hypothetical-protein	gnl\|CDD\|274666	TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking].	6.36851e-05
NC_008825.1\|WP_011829890.1\|2463334_2463973_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	4.30445e-106
NC_008825.1\|WP_011829892.1\|2464503_2465436_+\|DUF2145-domain-containing-protein	gnl\|CDD\|227071	COG4727, COG4727, Uncharacterized protein conserved in bacteria [Function unknown].	1.14763e-85
NC_008825.1\|WP_011829899.1\|2470882_2471893_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	7.6998e-55
NC_008825.1\|WP_011829897.1\|2468524_2470051_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0

>NC_008825.1|WP_011829889.1|2462423_2463110_+|electron-transport-complex-subunit-RsxB
MNALQRPADAPDARQAALADAIDAALPQTQCTRCGEPDCRRYAEAVAAGRADINQCPPGGAEGIVRLAALTGRAALPLNPANGSEGPRRLAVIDETWCIGCTLCIKACPVDCIVGAAKQMHTVVESQCTGCELCIPVCPVDCISLEDATQTTGWAAWSPAEADAARARYTATTRRRERGRREHDERLAAKAAHKLAHLDTETKPGNADETARKRAVIEAAMARARARR
>NC_008825.1|WP_011829888.1|2461392_2462427_+|polyhydroxyalkanoate-depolymerase
MLYQLYETQRALLSPFSEFASASSKLYSHPLSPFAQGPGAQRLSAGFDLIHRLTKEYEKPQFGITSIQVDGIDVVVQENVAIEKPFCKLLRFKRYTDDARLLTRMRDQPSVLVVAPLSGHHSTLLRDTVRTLLKDHKVYITDWIDARKSPTAVNNLAMNKSIEWFEHNVIYRVPPNYPGAGRLVYPGFLQHSGFVAMNPDRHMTAHYDYFLDLVRGDDDSADAHREFYDEYNAVLDMPADYYLETIKTVFQDFALVNGTWRVAGEPVRPQDIKTTALLTVEGELDDISGAGQTAAAVDLCAGIPKARKRHYELKGAGHYGIFAGRRWRDFAYPEIRDFIAKHHK
>NC_008825.1|WP_148210936.1|2459027_2461181_+|hypothetical-protein
MDPTLIALSRRLMAGLCAGLLLAGPTLAETDPADPPARVGSISALRGPVDSSPEAGAAWDPAKLNQPITSETSLWVPPGSQAEVRIGSSSVRLDGNTQAVFSQLDDHGIAIDVAQGTVRARVRSLATGDSFSFSADGVRAEAQGPGDYRVGYDPDRRAYTVRALSGRLRVVTPNNAFNLESGQESLVENGGSELQLRAMGQRDDFDAWAEARDRDQDRLASARYVSPETTGIEALDEHGYWTTAPDYGAVWYPRGLPYGWAPYRYGHWAYVRPWGWTWVDDAPWGFAPFHYGRWALIGGSWGWVPGPIVPRPVYAPALVGYVGAHSGNVSLSIGFGSGAPVGWFPLGPREWYYPPYRYSPRYVQQINVINVVNPPPHGPGDRRATRPTPVERPSYRYAQRPDAVTMVSEDQFRNARPIGRDRLDLTPGQMARLQPVAASLNPPGRPGGAVPGPAGRPGGAASGLPSALLPAPGRAQRPQEPRRAPVYGTRDDAPSMTPAPGGSAQRPPPMGQDRRRDEGEPTAAMPVPGRGIPAAGPPNVQRTPVVPQPRPAIVPGERTGSMQDGRDAADRPRSAQREPGPPRGDDRDDRGRRSYVDPGSAERGPHGQRIPRPDAGGAAPTQPVPRPQLSLPQATPSPQAIPRPVPVPAPQALPRPQVVVPNPPPQPMPQAREPRQPLQQQQQRGRESVNEQRGAGGGERRGGGGEGGQRGWSQRER
>NC_008825.1|WP_011829886.1|2457640_2458831_+|aspartate/tyrosine/aromatic-aminotransferase
MSLFASVELAPRDPILGLNEQFNADPNPAKVNLGVGVYYDENGKLPLLKCVAAAEHQMLEAPKARGYLPIDGIAAYDKAVQGLVFGDAATASGRIATVQGLGGTGGLKVGADFLKRLNPNAQVLISDPSWENHRALFTNAGFTVGTYPYYDAAQRGIAIDGLLGALNTAAAGTIVVLHACCHNPTGYDLSAAQWEQVIAAVKARGLVPFLDMAYQGFGQGIAEDGAVVQQFLASGLDFFVSTSFSKSFSLYGERVGALSVVCASKEEASRVLSQLKIVIRTNYSNPPTHGASVVATVLTTPALRAQWEQELAGMRQRIKAMRVALVEKLQAAGVKGDLSYITTQQGMFSYSGLNAAQMQRLRSEFGIYGVDSGRICVAALNQHNLDAVAKAIAAVI
>NC_008825.1|WP_041930113.1|2454549_2457273_-|TonB-dependent-receptor
MSTLAQQAPAAAASAPEAAPSDAAVRLNPVLVPGKRATDVGPMPGLAVTKDQIPANIQSATKEQIKESRALNIGDYMNTQLQGVSVNDYAGNPFQMDVNYRGFTASPQIGTPQGLSVFFDGVRVNEPFGDVVNWDLIPLNAIERFDLFPGSNPLFGLNTLGGAISVRSKNGFTAPGVEGELLAGSWGRRQVKLSAGGNDDTLGGFVAYTGFREDGWRDNSPSRVHQLFGRGDLRLDRGSLFASALFASNELIGNGLIPLSLYEQRAETVFTSPDRSDNRVLQLALGGQFDVSERFNITGQLYTRKSRRGGLNGDIYEGFDDMIGLRGGYFDPDNPAAGVQPRNGAYYNTPGVITGTPIGLLTDTALDQRTHGASLQFNWNLPTRSVMVGASIDRSRSTYSMFQRLGLIDATHGVYADPAALPAFIAAQMDIPGNNFEGTSTTKSLYASDTWTLAPQLTLTTAARYNHTTVDNQLLTRTVEGLVDLHELPANYDNAQTLTAEKFSYRSLNPSIGLNWLPAPGLNTFANVSRGSRTPSVVELGCAFDDTPTPVTLPGATPNDPPVVIGTTARSLLGPGCNLPTTLSGDPYLPQIRSTSFELGARGLLSANWEWNASLFRTDLKDDIYYVGVGQGRSYFDTIGKTRRQGLELGLQGRTGAFDVKASYSYTSATFESPFYMTSPHNSSADFDQNSRTQADLGYRDYQLLPSPGASLNGGRGTYHQILVKPGARMPGIPAHALNFNLGWRVTPSWKLGLGMQLRSMSYVRGNENNLHRPGGTDQETGQYYCSTNVQTRACDQSDGGYIQTPTRPGRTFTQKGTVPGFAVFNLDTSVVVTKGFTVVAQVTNLFDRRYVTAGNLGVNPFSPSTVGAIGASGWNYNSAEWQPSTFVGPGAPRGIFLGLSYALGAD
>NC_008825.1|WP_158304616.1|2452586_2454461_-|hypothetical-protein
MLMSACGGGTTGDTDEQPPAVRAELAGVVSPGFDLDAQIPEPGSSPITGRIVVSVKGSRGIIRTSDSFGAGPADEHRTSLAELDAPYMLRFSLVDGSFLVSVATEPGRANVTALTTLLVAQLLGADPATAFDNYSAASTANIARITDARIAEAQTAVTTYLQNVLGIPVRSGSASFTQVAFEAKDGDPMYDTMVALNAKLAADGITLTDLSQTIAAQARLCLTESITISLGGSTSRFCTASKSGLPETADPTVMAYVFTDPNGATLTLRVRGNDLLTERYVTAEGAAYDCSAAGCTGLVLGAPAGDLSRPATFTDARIGAATLNGSLTLPAPGPAIPVLPCDNNRYALVYPDFSFAAECVDASDPFGIGGMFGGDAGLPRTAVTFGSALSVYFEDGSLLSITALQPLTDPGTGQPVFFKCVGAECAGAVLGEPELNYDYGPELTLRSLTLAGVQLRALNADGTAAALGAATLQGTFLTIEYIQPPPTLNDCAGATDLVEGQLSFRADPVRICPNPVSGVKNTFVAPDGELTLNVTGSTPDGSGLPSPMLGVVVPAGGGGARISLVDAQQYACTGGCTGITVGAPNVAGERQVTFSGAVLREIESANLPGTRTITLNGSFVAPPP
>NC_008825.1|WP_036231169.1|2451700_2452459_-|hypothetical-protein
MKKRLPLRRRGMAMAIGLVLAGTGAAQAAGFETLSANGANVLKTCNPTSSSGVTTCKVTSLPGESGFDLVASRSAPIIINGVSVGTQLEKVWRHCTDKKLFIFGVRVQMNANQWDETGAAFNVNDVLRQVRTDKAVEVAYFAGSPAATKLLKAAGRTFAGLNEYDTAKPPRNNAWVDFRIDANAAEASGPSSPNSPWLLTKTRAPEGYSLQDFALRLLNSENEDVDQNSIYALGYQPVCTSEACAPEEDDDD
>NC_008825.1|WP_036231166.1|2450801_2451659_-|hypothetical-protein
MHIRSHLTALAAVAAVFGVAMPAQAQWVSLPTSGTILQTVNPKTVVSPTPATCTNTGVAPTGDQLPVEQQSASLATGKFTGLPGSAAMPGYASTPVAATSYTLQTGSPAKTVGTLYDRVYCAGSGTTTCNASKVYVFATRAILNTTVANPPNLTFEINDFFRTVPSTATVEAGYYMGTSGTSVDTGLSTKYVEYVGRTNSGLNQTITRDNTKVAFRTDVNASDPERCEPYSKNNPISAWVYHRVTCPNGVETAPANITFKTRVREGGEEGQPIISISTSGYVCKP
>NC_008825.1|WP_011829882.1|2449763_2450753_-|hypothetical-protein
MSRNSLWFDERPRHLGWLLLLLPVLAVLLVAVGTNLWRDQPSPATVPAVAVSPRGPDVAVRVGLPMQPGVRIDAGGTAAPAKPALPNCPYQQLDLVTAHGKVQRACVATTRTLQSGDLRSYVLEPQGVSDWTLRVDSGDGRVMAASLSAPGRGDYRCEEDTCAGFSIGPRDAHGGRTLVVSRAVLTAEDGVAMHLSASLKAPGDQQDADLACNEPGIAIVERSGAVLTLCPSGGGGVVRLEHERRLYSLRGAAGDTLLVGVDAGGAVDFVQIGALECQGLACSGATTQPGDDPASESGRRFSFSGTTVTDGLRGGAAALLNGSAVLPPF
>NC_008825.1|WP_011829881.1|2448675_2449755_-|hypothetical-protein
MIYLPRWLDDELHGRGWVLAAVMLSALLFSGWLVWARWSQPADAVQRVRVETAAPQPAPLALPVVADPVAVPASAAPAALPSCPHQHVDITGADGLLQRGCLSATRTRQSGSVRSYGTQAEGVSNWHMTIDAAGGQVISVRLRQGAIGTSPERLYVCDGVACQGASLATPDANGARALTLDDTRLQALPPGQRWRRPLPGARRSPDLAAAGSAAGQARPTVSVKAVLSAQPDRNDSALACAGRGVTIVNNQGAVIDFCALGGAGFEVADDGPTRFAFRDLEGRALAVAVGSDGTIDGVTLGTLSCRDTRCGGVSMSVRGDAGNPAAERSFAFSGTTLYEAGTGRPAATLNGGVTMPSQE
>NC_008825.1|WP_011829890.1|2463334_2463973_+|endonuclease-III
MKPADVETFFATLKAANPQPASELVYSSVFELLAAVLLSAQATDVSVNKATRRLFAVAPSPQRMLALGLDGVIEHIKTIGLFRSKAKHLLETCRLLIERHGGRVPRSREALEALPGVGRKTANVVLNVAFGEPTLAVDTHIFRVGNRTGLAPGKTPLAVELKLLQRVPAAYLEDAHHWLILHGRYVCQARKPRCWDCAVADVCDFRPKPPRP
>NC_008825.1|WP_148211050.1|2464084_2464507_+|hypothetical-protein
MAAAATAGRAESFASSASSAGSASSGSVSDSLHGSSNSSSRDKEVAEGDYRILEVAELPERPGLLRLTLQAALPRDDARAFFLDVPRQTLAQHRLGRGDVLSARHRPYGLEFALAQTREAFFLVLRDDWQRELPPHAVAL
>NC_008825.1|WP_011829892.1|2464503_2465436_+|DUF2145-domain-containing-protein
MTAGWRARALAAGLWAGAAAGCALAAPSDASRFCDRPTSLTARQQDRLLRFAAVVRQELDTSGRTVALISRSGLDLSRFDVRYSHAGISLQASENGPWSVRQLYYACDESRPRLYDQGLAGFLFGTDDPAIGHVSIVLPPPAEAATLERAALDKALALRLLAERYSANAHPYGLRYQNCNQWVMELLATAWGALDRGRDGSPEARARAQAWLAEQGYAPAPLQVGSQLLMFAAHFVPWVHLDDHPAEDRYALQFHISMPASIEAFVHRRLPEAERIELCHDERQVVVRRGWQPIGAACEPGPGDRVVALD
>NC_008825.1|WP_011829893.1|2465495_2466080_+|VOC-family-protein
MTRVRPGKLAHVLYRTRRFEEMLAWYRVVFDARIQQQSPALAFLTYDDEHHRFAFANLALLQPEGETEKTGLIGIDHVAYGYASLHDLFQNYVQLKSLGITPYWCVHHGVTVSMYYADPDGNQMEFQVEAFASKQEANAFMRGPVYAANPLGVEFDPDDWLARLAAGTPASDLLVRREHVPMSPIRGAVERRGL
>NC_008825.1|WP_148211051.1|2466041_2466608_-|histidine-phosphatase-family-protein
MHAWRHPAPKGAAGRCIGARTDLPVDRRKAKRLAHRIRAIARREGLPRAVATSPLARCRDVGRWLRRFGFRHVVDAQLAELDFGRWDGRCWEAIDAAEIAAWSADLVGHAPGGGESVRVLLSRVRAVHARAPAALLVTHGGWLSAAVWLALGEAHAPTAATWPKAPGYGRRVILWRLQAPALHRPSDR
>NC_008825.1|WP_011829895.1|2466637_2467468_-|adenosylcobinamide-GDP-ribazoletransferase
MKPIKPRLAHELRLLLLALQFFTRVPVTGRLAAWMGWDATWLNQSARYFPLVGAFVGAIAALVFAAAAMLWPMSVAVGLSMAATILLTGAFHEDGFADTCDGLGGSAERARALEIMKDSRIGAYGAIGIVVMLGLKALALMSLPLGWALAALCVAHTLSRAVAVSLNCWLPYAGDPAHAKAKPLAQQVSVGSWGVACVWPLALIAMFAAARHGSDSFALPSPQAWAAALVAAAMTGLACARWFRRRLGGVTGDTLGASQQLSELAVYLAMLAMLGR
>NC_008825.1|WP_011829896.1|2467464_2468523_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MDWTPPAVAPRADAALTARLRQRIDHLTKPLGALGQLEALMLQAGLLQGRVDPRLDAPQVLVFAADHGLAARGVSAYPSDVTAQMVENFLAGGAAISVLARLHGLPLTVVDAGVRGARAVRPGLIVRPVAPGGTADASLGPAMSRAQCVQALELGREVVGSVPGNALVLGEMGIGNTSAAALLTAHFTGAPLAACVGRGTGLDDAGLARKLEVLAQVAQRHAGVATPLEALAAFGGFEIAALAGAMLQAAHERRLIVVDGFIVTAALLVAHALRPAVLEACVFAHCSDEAGHARALAHLGARPLLALDLRLGEGSGAALAWPLVVGAVALLDGMASFDSAGISGRDASTATA
>NC_008825.1|WP_011829897.1|2468524_2470051_-|cobyric-acid-synthase
MNGRTRSPARAVMVLGTTSGAGKSWLATALCRWYARQGLKVAPFKAQNMSNNARVVPGSGGRLGEIGSAQYFQALAARVLPDVRMNPVLLKPENDTGSQVVVLGEVRADLAAVPWRERSERLWPFAQDALLALMAENDVVVIEGAGSPAEINLHASDYVNMRTAQAARAACLLVSDIDRGGAFAHLYGTHQLLPAAERALLRGYVLNRFRGDARLLEPGPQQLLALTGVPTLAVLPMWRGHGLPEEDGLHDEGPGWQRGAGNAAASLRIAVVAYPRISNLDEFQPLRQLRGVQLRWARSAEELAGADWIVLPGSKHTSGDLAWLREQRIDAALARHAAARRPVLGLCGGLQMLGEALVDPHGVEGENGEGNAPGLGLLPLVTAFEPDKLLRRTDACFDGVGDEWSMLRGVQFGGYEIRHGRSVQHPALPAAAVALRNAEGEAIGWQQGSVLGLYAHGLFESTEVLRALFGARVRGLESVFDGLADFIDRHFEPGALMRLLADAEPGKD
>NC_008825.1|WP_011829898.1|2470055_2470886_-|ABC-transporter-ATP-binding-protein
MNAPVAPRETGGPGPTLRADGLQVALGDHPVLHDLSLSLEPGWTAIVGPNGAGKSTLLRTLAGLLTPARGSVWLQQRRLAEWPARERARRIAWLAQQGDTSGDLTVRETVQLGRLPQLGLFALPGPADEAIVDEAMAATECSAWQHARLHELSGGERQRVLLARALAVRAPVLLLDEPTTHLDPPHQVALVRLLRRLARGHTVVSVLHDLPLALQADRLVVLQAGRLRAEGEHDDPALHHALVDVFDGALRIEPLPSPGGVQRYITVPHLPADAAP
>NC_008825.1|WP_011829899.1|2470882_2471893_-|iron-ABC-transporter-permease
MTHAEIVSRRRHLAVGLAVLSSLLIVAGLMAGSEGWSVGSLWGPDAGLIVGEIRAPRTLGAWLVGALLGLAGAVAQGLFRNPLADPYLLGSASGASLCVVLVLAGSALAGHGVSLAAADLLARAGLVLAAFAGALGGVLLTLLLSRGAQHTVRLLLAGVVVGVVLGAFGDLATMAAPEALRGKQAFMLGSTGFLGWTSVGLLTVGLALTLPLAWRLARVLDALTLGIDSAVSLGLALPTLRMVLVTVLALATGLAVSQAGLVAFVGLVSPHLVRRFVPATQSFTLVASAAAGGCLLLSADVLARSLIAPQELPVGVLTAVLGGGYLLWLLHRRGMA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

658137 : 667484

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011828223.1\|658137_658998_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-06	23.0
WP_011828224.1\|659005_659815_-	ABC transporter permease	NA	NA	NA	NA
WP_011828225.1\|659895_660450_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-40	46.7
WP_011828226.1\|660446_661331_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.7e-97	58.8
WP_011828227.1\|661358_662255_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.0e-17	31.1
WP_011828228.1\|662251_663325_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-85	49.1
WP_041929512.1\|663321_664791_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-42	26.9
WP_011828230.1\|664877_665972_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011828231.1\|665999_667484_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.1e-51	31.6

DBSCAN-SWA_2

3145623 : 3187533

Burkholderia_phage(62.5%)

integrase,transposase

attL 3145554:3145613|attR 3176497:3177714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3145554:3145613	attL	NA	NA	NA	NA
WP_011830032.1\|3145623_3146637_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-96	56.7
WP_011830547.1\|3146756_3148781_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.2e-44	26.1
WP_041929710.1\|3148804_3150031_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011830549.1\|3150203_3153893_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_011830550.1\|3154090_3156616_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_148210964.1\|3156666_3159219_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_158304624.1\|3159305_3161081_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_041929711.1\|3161208_3162078_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011830554.1\|3162293_3162695_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011830555.1\|3162744_3163953_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011830556.1\|3164088_3164643_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_041929712.1\|3165169_3165886_-	hypothetical protein	NA	NA	NA	NA
WP_041929713.1\|3165944_3166610_-	hypothetical protein	NA	NA	NA	NA
WP_011830560.1\|3166712_3167585_-	hypothetical protein	NA	NA	NA	NA
WP_011830561.1\|3167769_3168696_-	HNH endonuclease	NA	NA	NA	NA
WP_011830562.1\|3168767_3169193_+	hypothetical protein	NA	NA	NA	NA
WP_193373372.1\|3169443_3170937_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	2.2e-09	24.6
WP_011830564.1\|3170933_3171833_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_011830565.1\|3171829_3172708_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_158304625.1\|3172733_3173144_-	hypothetical protein	NA	NA	NA	NA
WP_011830567.1\|3173118_3174183_-	NERD domain-containing protein	NA	NA	NA	NA
WP_011830568.1\|3174281_3175238_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011830032.1\|3175472_3176486_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-96	56.7
WP_011830569.1\|3176809_3177277_-	hypothetical protein	NA	NA	NA	NA
WP_011830032.1\|3177424_3178438_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-96	56.7
3176497:3177714	attR	NA	NA	NA	NA
WP_011830032.1\|3179664_3180678_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-96	56.7
WP_011830572.1\|3181538_3183365_-	ATP-binding protein	E5E3R2	Burkholderia_phage	3.6e-14	24.3
WP_011829064.1\|3185203_3186037_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-32	36.8
WP_036236417.1\|3186033_3187533_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

3666165 : 3675761

Acinetobacter_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011831030.1\|3666165_3666744_-	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	1.4e-12	30.3
WP_011831031.1\|3666761_3667145_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_011831019.1\|3667371_3668562_-	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	6.9e-14	28.5
WP_148211082.1\|3669115_3669832_-	uracil-DNA glycosylase	A0A1L5JKJ8	Bubaline_alphaherpesvirus	5.2e-41	52.3
WP_011831033.1\|3669828_3670632_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-62	53.6
WP_011831034.1\|3670628_3671663_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.1e-74	45.4
WP_011831035.1\|3671663_3672233_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.2e-63	60.7
WP_011831036.1\|3672234_3673710_-	anthranilate synthase component I	S4VNU7	Pandoravirus	1.9e-45	31.9
WP_011831037.1\|3674186_3675761_+	SGNH/GDSL hydrolase family protein	A0A2K9L9B3	Tupanvirus	5.5e-11	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008826

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008825

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection