CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_009035	Shewanella baltica OS155 plasmid pSbal01, complete sequence	0 crisprs	NA	0	0
NC_009036	Shewanella baltica OS155 plasmid pSbal02, complete sequence	0 crisprs	RT	0	1
NC_009038	Shewanella baltica OS155 plasmid pSbal04, complete sequence	0 crisprs	NA	0	0
NC_009052	Shewanella baltica OS155, complete sequence	2 crisprs	csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C	1	15
NC_009037	Shewanella baltica OS155 plasmid pSbal03, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3497 : 59455

Enterobacteria_phage(18.75%)

integrase,transposase

attL 27380:27439|attR 57766:59353

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011839953.1\|3497_3842_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_011839954.1\|3890_4208_-	regulatory protein RecX	NA	NA	NA	NA
WP_011839955.1\|4204_5590_-	hypothetical protein	NA	NA	NA	NA
WP_011839956.1\|6243_6633_-	hypothetical protein	NA	NA	NA	NA
WP_011839957.1\|6625_6892_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SCV8	Streptococcus_phage	1.5e-17	46.5
WP_011839958.1\|6875_7100_-	TraY domain-containing protein	NA	NA	NA	NA
WP_014620453.1\|7620_7812_+	hypothetical protein	NA	NA	NA	NA
WP_014620454.1\|8140_8338_-	hypothetical protein	NA	NA	NA	NA
WP_011839960.1\|8334_8961_-	hypothetical protein	NA	NA	NA	NA
WP_011839961.1\|9512_9881_-	hypothetical protein	NA	NA	NA	NA
WP_011839962.1\|9908_11213_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	2.6e-38	30.5
WP_190272054.1\|11513_11849_-	hypothetical protein	NA	NA	NA	NA
WP_011839965.1\|16032_17034_-	OmpA family protein	NA	NA	NA	NA
WP_011839966.1\|17175_18123_+\|transposase	IS30-like element ISSba10 family transposase	W5R8L2	Staphylococcus_phage	6.6e-44	36.3
WP_011839967.1\|18804_19446_+	recombinase family protein	NA	NA	NA	NA
WP_011839968.1\|19497_20148_-	Abi family protein	NA	NA	NA	NA
WP_014620457.1\|20624_20816_+	hypothetical protein	NA	NA	NA	NA
WP_014620459.1\|21144_21342_-	hypothetical protein	NA	NA	NA	NA
WP_011839971.1\|21338_21965_-	hypothetical protein	NA	NA	NA	NA
WP_011839972.1\|21979_22243_-	hypothetical protein	NA	NA	NA	NA
WP_011839973.1\|22279_23179_-	hypothetical protein	NA	NA	NA	NA
WP_011839974.1\|23744_24476_-	hypothetical protein	NA	NA	NA	NA
WP_014620461.1\|24484_25129_-	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_014620462.1\|25115_25643_-	DUF2857 family protein	NA	NA	NA	NA
WP_011839977.1\|26663_28166_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
27380:27439	attL	NA	NA	NA	NA
WP_011839978.1\|28155_28902_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_080514436.1\|28926_29205_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.4e-18	62.7
WP_014620463.1\|29490_29850_-	hypothetical protein	NA	NA	NA	NA
WP_011839979.1\|30765_31335_+	ParA family protein	A0A1B3B0Z9	Gordonia_phage	3.5e-08	45.1
WP_011839980.1\|31331_31697_+	hypothetical protein	NA	NA	NA	NA
WP_012592954.1\|31970_32126_-	Hok/Gef family protein	NA	NA	NA	NA
WP_011839981.1\|32871_33606_-	hypothetical protein	NA	NA	NA	NA
WP_011839982.1\|34065_34707_-	LexA family transcriptional regulator	W6MVG5	Pseudomonas_phage	5.0e-19	32.2
WP_014620439.1\|34862_35081_+	TraY domain-containing protein	NA	NA	NA	NA
WP_011839983.1\|35049_35640_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.8e-23	37.2
WP_011839984.1\|35800_38785_+\|transposase	Tn3-like element ISSba14 family transposase	A0A1B0V7H9	Salmonella_phage	9.6e-299	53.3
WP_011839985.1\|39279_39618_-	hypothetical protein	NA	NA	NA	NA
WP_014620440.1\|39713_40034_-	hypothetical protein	NA	NA	NA	NA
WP_011839986.1\|40114_40501_-	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	9.6e-10	31.9
WP_011839987.1\|40500_40671_-	hypothetical protein	NA	NA	NA	NA
WP_011839988.1\|40804_41236_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_011839989.1\|41540_43664_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	2.9e-39	28.9
WP_011839990.1\|43673_43985_-	hypothetical protein	NA	NA	NA	NA
WP_011839991.1\|43987_44437_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_011839992.1\|44485_44986_-	hypothetical protein	NA	NA	NA	NA
WP_011839993.1\|45193_45670_+	DUF417 family protein	NA	NA	NA	NA
WP_011839994.1\|45767_46349_-	DUF2913 family protein	NA	NA	NA	NA
WP_011839995.1\|46345_46624_-	hypothetical protein	NA	NA	NA	NA
WP_014620443.1\|47182_47482_+	hypothetical protein	NA	NA	NA	NA
WP_014620444.1\|47441_48371_+\|integrase	integrase	NA	NA	NA	NA
WP_049765992.1\|48922_49198_-	hypothetical protein	NA	NA	NA	NA
WP_011839997.1\|49212_49467_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_011839998.1\|49463_49715_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011839999.1\|49978_50428_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	6.5e-34	47.9
WP_011840000.1\|50427_50997_+	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	3.1e-49	50.5
WP_011840001.1\|51059_52229_-\|transposase	IS256-like element ISSba12 family transposase	A0A218MNI5	uncultured_virus	1.9e-77	75.0
WP_011840002.1\|52449_55449_-	hypothetical protein	NA	NA	NA	NA
WP_011839978.1\|56302_57049_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_086011359.1\|57900_59455_+\|transposase	IS3-like element ISSba13 family transposase	A0A1P8CWQ3	Bacillus_phage	5.8e-05	27.3
57766:59353	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009052

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CRISPR-Cas detection and classification

Crispr_ID: NC_009052_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009052_1

1619072-1619178

Orphan

Consensus_repeat	Method
ATCAATTGCTGGAGCATTGTGATGTTAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009052_1

>merge|NC_009052|1|1619072-1619178|CRISPRCasFinder
ATCAATTGCTGGAGCATTGTGATGTTAGTTTAAATCGCTTGATTTTCTGTTGTTGTAAAAACCACAGCGCCGCGCCAATCAATTGCTGGAGCATTGTAATGTTAGTT

>NC_009052|1|1|1619072-1619178|CRISPRCasFinder
ATCAATTGCTGGAGCATTGTGATGTTAGTT	TAAATCGCTTGATTTTCTGTTGTTGTAAAAACCACAGCGCCGCGCCA
ATCAATTGCTGGAGCATTGTAATGTTAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009052.1\|WP_011846317.1\|1622839_1624345_-\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|368139
NC_009052.1\|WP_006085186.1\|1615040_1615667_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_009052.1\|WP_011846322.1\|1632780_1633236_-\|glutamyl-tRNA-reductase	unknown	unknown	unknown
NC_009052.1\|WP_011846311.1\|1612804_1614832_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_009052.1\|WP_011846318.1\|1624412_1627049_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NC_009052.1\|WP_011846320.1\|1630416_1631739_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
NC_009052.1\|WP_006085199.1\|1629675_1630098_+\|DUF3224-domain-containing-protein	unknown	unknown	gnl\|CDD\|371584
NC_009052.1\|WP_011846319.1\|1627393_1628521_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200570
NC_009052.1\|WP_011846321.1\|1631894_1632449_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NC_009052.1\|WP_011846310.1\|1610846_1611485_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_009052.1\|WP_006080938.1\|1628735_1629521_+\|hypothetical-protein	unknown	unknown	unknown
NC_009052.1\|WP_006080930.1\|1615803_1616046_-\|hypothetical-protein	unknown	unknown	unknown
NC_009052.1\|WP_011846308.1\|1606385_1608605_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NC_009052.1\|WP_006080922.1\|1608740_1609304_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|377140
NC_009052.1\|WP_006080925.1\|1611648_1612662_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349469
NC_009052.1\|WP_011846313.1\|1616296_1619029_-\|carbohydate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|119337
NC_009052.1\|WP_014620668.1\|1620017_1621316_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_009052.1\|WP_011846309.1\|1609411_1610617_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340968
NC_009052.1\|WP_011846316.1\|1621855_1622830_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380381
NC_009052.1\|WP_011846307.1\|1605333_1606047_-\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138

Protein	Function_ID	Function_description	E-value
NC_009052.1\|WP_011846317.1\|1622839_1624345_-\|tryptophan-7-halogenase	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	2.94554e-120
NC_009052.1\|WP_006085186.1\|1615040_1615667_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.48915e-47
NC_009052.1\|WP_011846311.1\|1612804_1614832_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.42754e-56
NC_009052.1\|WP_011846318.1\|1624412_1627049_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NC_009052.1\|WP_011846320.1\|1630416_1631739_+\|IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	5.16724e-35
NC_009052.1\|WP_006085199.1\|1629675_1630098_+\|DUF3224-domain-containing-protein	gnl\|CDD\|371584	pfam11528, DUF3224, Protein of unknown function (DUF3224). This bacterial family of proteins has no known function.	7.63003e-49
NC_009052.1\|WP_011846319.1\|1627393_1628521_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200570	cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain of uncharacterized Mll8295 protein encoded from Rhizobium loti and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase Mll8295 encoded from Rhizobium loti. Although its biological function still remains unknown, Mll8295 shows high sequence homology to the catalytic domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both Mll8295 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	3.72485e-91
NC_009052.1\|WP_011846310.1\|1610846_1611485_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.32517e-23
NC_009052.1\|WP_011846321.1\|1631894_1632449_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	3.28378e-16
NC_009052.1\|WP_011846308.1\|1606385_1608605_+\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.20462e-83
NC_009052.1\|WP_006080922.1\|1608740_1609304_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|377140	pfam03831, PhnA, PhnA domain.	7.23349e-31
NC_009052.1\|WP_006080925.1\|1611648_1612662_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349469	cd06251, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	9.2669e-95
NC_009052.1\|WP_011846313.1\|1616296_1619029_-\|carbohydate-binding-domain-containing-protein	gnl\|CDD\|119337	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NC_009052.1\|WP_014620668.1\|1620017_1621316_-\|MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.80052e-79
NC_009052.1\|WP_011846309.1\|1609411_1610617_-\|MFS-transporter	gnl\|CDD\|340968	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli cyanate transport protein CynX and similar proteins. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The gene encoding CynX is part of the cyn operon that also includes cynS, encoding cynase, which catalyzes the reaction of cyanate with bicarbonate to give ammonia and carbon dioxide, and cynT, which encodes a carbonic anhydrase. The CynX-like subfamily belongs to the 2-nitroimidazole and cyanate transporters like (NIMT/CynX-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.96027e-104
NC_009052.1\|WP_011846316.1\|1621855_1622830_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.90862e-26
NC_009052.1\|WP_011846307.1\|1605333_1606047_-\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	1.02e-99

>NC_009052.1|WP_011846313.1|1616296_1619029_-|carbohydate-binding-domain-containing-protein
MKGLIKKKGKIKWQRIKTALVSGIMAVLPAMPVLSILVMPSVQAANAVQEANHVALNQLADKLQLNYQLTASYLETCPAKETQCYRSAIELTLPTQLSNEELNHGDWQIYFSQLSPVYFVDAGDFNIEHINGDLHKIVPKASFKGFVANQFYRIEFYSQGSQITRSEFMPNFFVAMGDKAQLIKSTQTQRNKETGLPEQAYLAPFNADQQFLLAKNDATPFADGQYLAEQYQALAANANKATDISDKLIPTPLHSQSLDSAPLSLAKGYRLTADAVDFKGRQAAFDYLASLGFAAKDKGTPLLLQLDTQAPKVASTEAHDSEMKTSEAYQLTITAEQISIRAGTEAGLFYGLQSLAGLISLSDDQLVAIEIQDQPRYAFRGLHIDLARNFHSLDFIKRIIPQLAAYKINKLHLHLADDEGWRLAIPGLPELTDVGAKRCFDLTEQSCLLPQLGSGIADVKPVDGYLTVAQYQEILQLADAHHIEVIPSLDMPGHSRAAIKSMEARYHNYLAKGDKAKAEEFLLTEFADKTQYSSLQYYHDNTLNVCLASTYHFIDTVIDEVKKMHQAVGIPLVHYHIGADETAGAWVDSPACITMKKQKADELTGLHSLNGYFIERVANMLADKGIIAAGWNDGMGEVRPENMPAQVQSNAWSLISDNGHQIAHKQVNLGWKVVLSTPEVTYFDFPYASHPDERGNHWAARAIDSFKVFSFMPDNLPAHAERWRNSLNQPFIADDSHSQLKPGHRFYGLQGHLWSEMVQSDEQAEYMLFPRMIALAERAWHKASWELAYDYQGKIYSQQTQHFASQLNGQAEQVLKQDWQTFAAVYANKVQPKLAKAGVFYRIAPPGIRIENQLLVLNSLYPNAELEYQLDSGPWLTYRQAFKLNDVKHIRARVKDGTRYSRPSTWQSSL
>NC_009052.1|WP_006080930.1|1615803_1616046_-|hypothetical-protein
MTTASTSPFAVLNQTTATSFNEQKNLIKRVFKGKPVQCPSCKQTLKVILPEQAKAEQAAGIYCAKGCTDIELDMEAVAGL
>NC_009052.1|WP_006085186.1|1615040_1615667_+|fumarylacetoacetate-hydrolase-family-protein
MKSVVLGEKRIVPTKIVCIGRNYVDHIHELGNDIPDDMVVFLKPNSAMSTVLLAEHQGEALHYETELCFMFQDGRFSSVAIGLDLTKRDLQSKLKAKGLPWERAKAFDGAALFSPFVAIDDAEAPLHFTLSINDNLVQEGHIDLMIYKPQTILSELQAFISLDEGDIVMTGTPKGVGVIPAKSVFNVTLSRGLQASAEPLLEWQWQVS
>NC_009052.1|WP_011846311.1|1612804_1614832_-|methyl-accepting-chemotaxis-protein
MLTLTIKQKIIFSFSAIGALLIAGSSFFYYSLSQVQTAYQNIETLAVPVQKQSNSLQLVLLKMSRLATLAHSQQDTAALTKSQQAFTALQKKYQSIENELTERVADQSKMQTSLHEAQARYQAYLQQSQAMFSAKLANEQAKQQYQQLFQRFNDAKTNASNAMIDLETLSIPDNPTLLEEIIGTGTRIDDMLYTLTNTMGELIHTQSLEVIQSHQQDVSILLGNLTTNFTFLKQQTDGLDTLGLLQTFEQQYAIINTLLAAPAELYKTQQAVVEAQLQAEQHYLDADKEFNANNLALDKLITLADRRFSSLQTIASNAIEQGQTLAIVLALVFIVMVSFISFFTSKAMLNPLALVNGALASIARGDLSKRIHKRHDDEFGTLIDNMNTLSDDLAKLLTNISQNAHSLDSSATQTNEQGQRIANAATAQISRVDETKALAEQMFTSSNLVTEQASESAKQISQASKYGNQVKQIADDNRNKIAELSARLSSSVEIMSRLSIQSDNIGNILTTISSIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRSLASRTQAATAEIQTMITALQKETSTAASAITTGQNQANECVGQSQTLQDAIAHIESTLHTLNDMSLEITHAAHEQLDYSQRIESSMSEAAQAADQNANEAMDMAKRSNEVTTLAHSLTSSVERFKL
>NC_009052.1|WP_006080925.1|1611648_1612662_+|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MVKRREAFELAGKRVTAGTQLGIKLAAAKLYTDTQLDIHVEVFHGAKPGPTLLVCAAIHGDELNGIEICRRLLARVNPKNLTGTLIVVPIVNVFGFIQQSRYLPDRRDLNRCFPGSSKGALASRLANLFATQLLVHATHVIDLHTGAIHRDNLPQIRCDTSDETMLAMANAFGAPLIMHSKARSVSMRGYANQQGIPCILYEAGEALRFSELSIKSGLKGVLNVMRSLGMLKGRVSNKGSSVSAIRSYWVRSESDGLVNMKLKLGQRVTKGYIIAHIVSPHGGDSVAIRAPTDGIIIGISNIPVTNEGEGMFHIAQFEGDEIEMANEQLDEFLMEYA
>NC_009052.1|WP_011846310.1|1610846_1611485_+|MarR-family-transcriptional-regulator
MTAKMTLTHASPADTNASSADKNASSADKNASLADKDQAASNTKADGLESEDGLDSIVGQWQQQGVTDDLIPMAVLGRIARLTKYIEVVLLQCHAEFGLGQGEFDVLATLRRSGEPFTLSPSQLYLSMMLSSGAMTSRLDRLENKGLIERAHSKEDRRAVHVSLTAEGKALIDKALPQHIQCQSALLAGVSVEDRPMLLQILKSWLNQFEPQ
>NC_009052.1|WP_011846309.1|1609411_1610617_-|MFS-transporter
MRSPQSEKANLLLLGIAFILIGLNLRPILASVGPLLPSIQEDISLSFTLASMLTLLPVLAMGLGCFAGFSIAKRLGFNTVMTGSLLLLIVATAMRFWAMDASWLICSALLAGVGIALIQTIMPAMIKLNFGERVPLMMGLYVTAIMGGAALAASSAPFIGMNLGWRAGLGHWTWLGVVALALWLMVKHNAALPNQTAEQTVQLSFWRFRRSWLLAIFFALGTSCYVCVLAWLAPYAVELGYSQTQSGLVLGFLTSMEVIAGLVFPWLASKSTDRRAIIALLCLLQLIGFMGLALAPQVSLFLWAGLAGLGIGGIFPLGLIVTMDHQQNPMLAGKLTAFVQGVGYTIAAISPWIAGLIRDNFNSFNSAWLLLGGLSLMAWILSWQFNPQGYARQYQVTRCVS
>NC_009052.1|WP_006080922.1|1608740_1609304_+|alkylphosphonate-utilization-protein
MTENELLSRCGGKCELCGSEIELSIYDLPASDGRDNEIMICETCSGQIAAPDTMDMNHWRCLNDSMWSPVPAVQVMSYRMLKRLNGESWAQDLLDMLYLEDDVKAWGDAEVAAAGDDTTPTLDSNGAVINAGDTVVIIKDLNVKGTSFVAKRGTAVRNIALTNNPEHIEGRVNGTRIVILTCFVKKS
>NC_009052.1|WP_011846308.1|1606385_1608605_+|TonB-dependent-receptor
MGCLPKFGKWKANRNLSLMGLCLLPSMPLYANEVLGEPKVEPIEILQVHGQQYRRAITVAKPGEAIISMEQIEEMQATTFAEVIDDMAGAHIDGGTRSGGERINIWGFGETEDFNVYVDNAPVGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGAMYVVTKSADDFLKYDQAIGARVKTSYASNNDAAGYTGTVYGRVNPHLSGLLHLTRRDAGDVTLANGDEFEYSGYEQDNYLGKIDYEQGDHQLALSVTHYLDEGRKPWANRRGPMPAISDYNIKKYGSYEQALYATTAYNTYEDNTWSANYRYSPSNPLIDTQVVISHSANARHWVRPDIAWEKMTVSVGNFGHESWLDYKRDYIDINNLSLIGDHEITTGLQYRSLDRTSLVFNKSYEKNPEKNFGWYTPYYQPEGRQDTYAVYVRDAIHLTNDLTVTPSLRYDFIYSIGRPNIAPDYNDISAGHDYSSTHHSGFSPRLGIDYQLTNYARLNFDYAYSLQAPVVDEIYAVQYARASITGTSRDIDVERLHAFKLGLMTQHQHLLANDDALTTQLTLFANLGRDDIAQRRGAKSDKTQLIQSGYTNLDGYHIYGADFEAQYRYQDVFSDLAVSWLQGQHNGSLRDSQDDDEYLANMAPLDIRLRLGMYITDDISVAWQGAWYDAQTNVPHGDIFNAESPSENYFLQNLYLAYEPQASLKGLSVRLMVKNLTNLQVVPFLSDGIPAAGRDVRLSLAYEF
>NC_009052.1|WP_011846307.1|1605333_1606047_-|DUF2461-domain-containing-protein
MATLTTKIPIATGATFSAASLQFLNQLAQNNSRDWFKAHQAEYEETVRTPALQFIEQMQPSILALSPRLTAVPKKVGGSLMRPQRDSRFSKDKTPYKTNVGIQFRHFQGKDVHAPGLYLHIAEDGCFIAAGIWHPESKALNAIRTCIDENPNGYKKALQTLQSHGFNMDGDSLTRPPKGFDKNHPMLAELKRKDFIAVKNITFEELCRPDAASFCAEQFAHCTQLMAYLCFALDLDF
>NC_009052.1|WP_014620668.1|1620017_1621316_-|MFS-transporter
MKHKLIILFVLCTFFVISLMTNSMGPIFPALIDSYAIGLTLAGLFPFAFFIAYGVTSIPAGILVDKYGERRVIILAFSLAFIGAVTFVCLPSFSIAMFSLFCIGTGMSLLQVAVNPLLRQAAGPEHFAFFSVLAQLAFGGAATLAPLVYQHFVALDQASAASANYVQQLLPENMSWLAMYWLFAVVALAMVLFASLVKMPKVDKLADESAGALETHLHLFKDKTVLKFFFAIAAYVALEQGLANSISVFLSQYHGLDTLSVGANVVSDFWFYMTLGCLLGLLLLKLIDSQILLLSFSLSSLVCFLVAIWGPSQLALICFPLVGFFISIMWSVIFSLALNSRAQDHGSFAGILCTGIIGGAFISPIIGVISELSGELRFGMLVLLIPMAYIGYVALTARPLIKNTTLFSTKAASKDDGSKQMATTNTRGNKLL
>NC_009052.1|WP_011846316.1|1621855_1622830_+|helix-turn-helix-domain-containing-protein
MKPLCEKVIPDENSSWRYFRYEWDHMDLNWHYHPEYEICLTLNSYGMRYVGDHIARYGDYDLVIIGPDMPHGWQSEANLDISPDEVSKDDGLKGGTSTAVNLKEPALKGSASKSRVPEVVYVAQIPAAWLHQIVNDQRELASLHSLLTHAKRGVLFSEETARKAHSVFIAMEMANPFKRYILLLELLALLQQDSQQELLSSTLFTHGSKLDFTVKKLDKVIEHIYDNYTQALSAQDLAKLAHMSTNHFHRFFKKRTEKTLTEFINQLRIAKACKLLLSNQSPISTISDQCGFNNLSNFNRRFIQFKGVTPSRFRQRFSSKQRAI
>NC_009052.1|WP_011846317.1|1622839_1624345_-|tryptophan-7-halogenase
MKVKQAIRKIIILGGGTAGWMAAAALANNPVFAAIELCLVESDNIGTIGVGEGSTPHLKRFMDNLGISEKDWMELCHASYKTGIDFINWNGDGQQYFHPFYFQMDVKPAEVFFINANARRRGHGNAVKPDAFFSSGVLAKRNLSPRPNKALPCTNEYGYHFDATELANYLKDYACKRGVRQIIADVVEVSTTQHQQIETLILANGERLSADFFIDASGFSAKLIHKALGVPFQSFADELLNDSAVTVPVPALMDSTQTQQAKYHTRATALSAGWLWQIPLTHRLGNGYVYSSRHLSANAAAKELLHSINLPESTQVRFLKMRVGVSDKAWHNNVLAIGLAQSFIEPLEATSIMMTQFTLERFMSLFERYQLNKQAETLSRQTLNQAVMQLVLGIKDYIQAHYVTSQRSEAYWVAARKVAISQRLTQLLKAWYQGEDFDLLLYQYDQQLAYFRPSWYALLAGMDYRDPKLKRPFEPISAEITAQAISYCQTLVEQYFQPKHS
>NC_009052.1|WP_011846318.1|1624412_1627049_-|TonB-dependent-receptor
MSEGQLFKSSLLALCIANALFGMSSTAVAAEQQEATAENMEVIQVRGIRRSIEASLNTKRFADSTVDAITSEDIGKFPDKNIGDALQRISGVTVDRQYGEVSGVTIRGTAPEQSRILLNGQTVASTSWYDLGPATRTFNMELLSAEQVNAVEVHKTPTARLEEGALGGTVDLKTRKPLDLDAHTYQVAGELSQSSLYDETDPSGSFLGSWKNDDEKFGILGAYSVEKITSGRQVLESLSGYYEYFAADPAQNQESTVGAWGIGSQAFRAERERTSAQVTLQFAPTDNTEFTLDYFNFELDIPHVNHNFLTVGARGSGSTNVVNNAQGGTASATILPAYASIIYNPVVRHAVNMKSDVLNLTGKYVGDSFTVSGVIGQSTSDGGTQGGSSSWWIPATDQGGKIGDPAFPNGQGSVDGGFSYDATGPYQVVLTSLDANDASQFKHAQEANYETTVQDHKVTYAQTDFEYQLDHDFINKIAVGIKYNTSDFERNAFNRNPAEILGFVPNGNLANWSDGVLSGLHSQSGGNVLDSYAKLDEDKWWAFISEKYANGELVEVADLGNTFTVEEDMLALYAQADFSGEFYRGNFGVRYVNTDQTSTGFADGKPYNESVNYDNWLPSINVAFDLKEDLILRASASSVMARNNYSDLKPGLAIAKNFGTATGGNPNLKPYKANQADLGIEWYFTESSMLSAALFYKDIDNVVFVTESTQYIEGCGASESEWDKCRVIAPANGGSGSVTGLEIQLQHNFESGFGFLTNYTYVDSKSTRPDGTEQMIEGVSENSFNGSLFYEDDLFSARIAYNWRSEYLGVGNIQNVLNDSYQQVDASIIWHAMENLDVSLEGVNLTNEVVQSYDVKYGLTQNTIEFGSRYFVGASYKF
>NC_009052.1|WP_011846319.1|1627393_1628521_+|polysaccharide-deacetylase-family-protein
MKLKSIAAAVGLCLASLSVAHASDKTIYLTFDDGPIDATLGLLDALKDANIKATFFINAFHMYGEGDENEALAAVALQRLLDDGHILANHSYDHMLHNCTDGVQSGAVYCNQVGLWPVKSYQDAATDFTYFVTNTAKVVEIIPNAASYPNNKMTKLARLPYTNGWRVSSKLKGDGLCATSDTVPPWDPAFACTAETSTNSSQVAVQIQNMLAESDYKIFGWDFDWGPEDWGVAFPAESMADGVELVDKINQVINTCAGTTMNPLNSRTQNLDCSDGLHDGKVVILTHDFLFENAHRGQGATINLPKIKRFVEEAQRQGYRFDTLDNYAPAWQDQHDYQQPDFVSYQDKIYSLVQAHFSQSNWQPNQTPALWKNEK
>NC_009052.1|WP_006080938.1|1628735_1629521_+|hypothetical-protein
MSTFVKLTLAGTLVILAILAAGIYRFNMTNDDIYMVMEDGKVMQYDEAMAQEKTQAQTNEVEVVTPLEVKPVANASEVMLKLFSLNTANPFEITLPEGGKSVALTHFIKIKQTEFAMGDYQDGEVKGRVLLDYLRITPLNFDPALEPDTQSNAPIQDDPKMQTMPFVAPFIVTTQGSGAFWYLGLFSLDFEHNNLKHLGSVMLGDRIEVDSIEPVYPFEAPFKIAVTYRDRAPDQPMSESPEIVKTLEVTVSETGITNINQ
>NC_009052.1|WP_006085199.1|1629675_1630098_+|DUF3224-domain-containing-protein
MQVSKITGKFDVKLTPDSTYATGVGGVTLGRMGLDKTFYGELEGRSQGEMLSAMTSVKGSAGYVAIEQVVGKLCGKQGSFVLQHFGIMTDGQNRLILEVVPHSGAGELQGLTGTMAISIENGQHFYEFQFGFEASAEPAF
>NC_009052.1|WP_011846320.1|1630416_1631739_+|IS4-family-transposase
MQLSEALARTHITRLTEFTCLADVLEPELIQSCLDSQGVATLRRRKLPMDAMIWAVIGMALFRGESVRSLINKLDIVLPQEIDYVARSAVTQARKRLGSEVIREVFSRSANTWHARAEHPHWCGLNLYGVDGVVWRTPDSVQNQAAFARTANASGEAAYPQIRMVCLMELSSHLLVNSAFDSVAENEMNLASQLIPSIPNHSLTLFDRGFYSLGLLHAWQQAQPDSHWLLPLKKGTQYEVVRTLGKHDQWVKLTTTPLARKKWPQLPDTLEARLLTKTVKGKSVAILTSLTDPMRYPSEDIVDLYGHRWEIELGYREMKQHLLESRFTLRSQLPELVTQELWGVLLAYNLIRYKMLLMAKSLPSVHPNQLSFRDAASYIIFKLTQLPSQTPGNVPRDVLDIERNARQFKLDGKRERAYPRVLKMSKNKFPVRPKKNAVHS
>NC_009052.1|WP_011846321.1|1631894_1632449_-|BON-domain-containing-protein
MKTTTASVLATLLVGSISLNVAAAQDWKDGAKDAWIDGKAETTLLLNTNLNSFDIITDVKEGNVTLTGKVESSVDKALATELIKSLDGVKDVDNQLIVMNEKEGTSEVVATLTDSKVATVVKTRLLFSTDVSGTQINVDVANGIVTLKGEVASDAERQLALKIAENTDDVKKVVDEIKVVKKAS
>NC_009052.1|WP_011846322.1|1632780_1633236_-|glutamyl-tRNA-reductase
MKSNVVQHQTDIRADIMLIDEMITLNQEGLTFYNQAMTYVEDYNLKRIFSTKANIHQRMLRRFEQLRPLSSEPLHGLSHTIPVTYTQATKLLHQCHISQAMAALVVIEQQVLTQMKQAVRQAHQPQLANQLAEGAAWLQISCDGMSSLNPG

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Crispr_ID: NC_009052_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009052_2

5060793-5060868

Orphan

Consensus_repeat	Method
TGTACAAACTTTATTATTCCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009052_2

>merge|NC_009052|2|5060793-5060868|CRISPRCasFinder
TGTACAAACTTTATTATTCCAAAATAAACTTATGTACAAACTTTACTGTTTATGTACAAACTTTATTATGCCAAAA

>NC_009052|2|2|5060793-5060868|CRISPRCasFinder
TGTACAAACTTTATTATTCCAAAA	TAAACTTATGTACAAACTTTACTGTTTA
TGTACAAACTTTATTATGCCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009052.1\|WP_011848269.1\|5063269_5063755_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NC_009052.1\|WP_006084808.1\|5064752_5066297_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_009052.1\|WP_011848262.1\|5052506_5053940_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|379756
NC_009052.1\|WP_011839977.1\|5056746_5058249_-\|IS21-like-element-ISSba11-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_009052.1\|WP_150100093.1\|5055386_5055941_-\|hypothetical-protein	unknown	unknown	unknown
NC_009052.1\|WP_011848267.1\|5060873_5062058_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NC_009052.1\|WP_014620909.1\|5066307_5067441_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236942
NC_009052.1\|WP_006084804.1\|5069899_5070154_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NC_009052.1\|WP_011848272.1\|5067473_5068679_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_009052.1\|WP_011848268.1\|5062248_5063265_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NC_009052.1\|WP_011848266.1\|5059920_5060748_-\|heteromeric-transposase-endonuclease-subunit-TnsA	unknown	unknown	gnl\|CDD\|378037
NC_009052.1\|WP_011848260.1\|5049082_5049301_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_009052.1\|WP_011848263.1\|5053950_5055387_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_009052.1\|WP_011848265.1\|5058320_5059931_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_009052.1\|WP_011848261.1\|5049836_5050208_-\|hypothetical-protein	unknown	unknown	unknown
NC_009052.1\|WP_011848273.1\|5068691_5069447_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NC_009052.1\|WP_011839978.1\|5056010_5056757_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|136670
NC_009052.1\|WP_006083784.1\|5069421_5069877_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236820
NC_009052.1\|WP_086011359.1\|5050418_5051974_-\|IS3-like-element-ISSba13-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_009052.1\|WP_006083779.1\|5064050_5064485_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089

Protein	Function_ID	Function_description	E-value
NC_009052.1\|WP_011848269.1\|5063269_5063755_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	7.92192e-87
NC_009052.1\|WP_006084808.1\|5064752_5066297_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_009052.1\|WP_011848262.1\|5052506_5053940_-\|TniQ-family-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	9.15653e-16
NC_009052.1\|WP_011839977.1\|5056746_5058249_-\|IS21-like-element-ISSba11-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.40784e-10
NC_009052.1\|WP_011848260.1\|5049082_5049301_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.02787e-33
NC_009052.1\|WP_011848267.1\|5060873_5062058_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NC_009052.1\|WP_014620909.1\|5066307_5067441_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236942	PRK11637, PRK11637, AmiB activator; Provisional.	2.21358e-83
NC_009052.1\|WP_006084804.1\|5069899_5070154_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	7.69755e-05
NC_009052.1\|WP_011848272.1\|5067473_5068679_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.20277e-101
NC_009052.1\|WP_011848268.1\|5062248_5063265_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NC_009052.1\|WP_011848266.1\|5059920_5060748_-\|heteromeric-transposase-endonuclease-subunit-TnsA	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	9.69692e-23
NC_009052.1\|WP_011848263.1\|5053950_5055387_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	1.42584e-12
NC_009052.1\|WP_011848265.1\|5058320_5059931_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	0.00144289
NC_009052.1\|WP_006083784.1\|5069421_5069877_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|236820	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR.	2.51749e-53
NC_009052.1\|WP_011848273.1\|5068691_5069447_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	7.999e-88
NC_009052.1\|WP_011839978.1\|5056010_5056757_-\|ATP-binding-protein	gnl\|CDD\|136670	PRK08181, PRK08181, transposase; Validated.	1.76104e-83
NC_009052.1\|WP_086011359.1\|5050418_5051974_-\|IS3-like-element-ISSba13-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.11665e-25
NC_009052.1\|WP_006083779.1\|5064050_5064485_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	8.09423e-32

>NC_009052.1|WP_011848266.1|5059920_5060748_-|heteromeric-transposase-endonuclease-subunit-TnsA
MGRFRKLETLEDYQRALKNNYGLGEADTYMPWLRVQDVNSAGNSGKIDGIKSNRVHHTLSEQESCFFYLVEFCDPVIDIREQFPLLPLDLSVRLAKTLDVDHPINPMTKEKCFNVMTTDFLLTLTDGTKTWYEAISVKPADDLKDKRTAEKLDIERVWWQLQGVVFHIFSMTEQSQIQSRNIQWFTSPYRQGSNFQNDIIEKAKSIVKLGTNLIEDLCNEFIRELNVEHDDALVLLKVLLATKQIRVDLTKPIAESGILQVVKVARQVGEQQNAS
>NC_009052.1|WP_011848265.1|5058320_5059931_-|DDE-type-integrase/transposase/recombinase
MQVELNSVWLFEDVGEIQDGTYRVLSHYPDDSIIVIFKLTDDSNLQRPIAVSIAVFIKATEDGQVSPSDYLTPFYQLVSEETISEAHKNKRNTRFQQIKELITVPNFLLDISLNPRCKHVVDHAKKQNTYVQGLYRSLNLFWKYGQELNALLPAYKNSGGTGKSRIAGDVKRGSPIQVSTPGLIVPKGINTSEEDKVKFLKAMKCYGLRGKAVIYSRVYDQMLTEFYADELISADIEQRDVCVPSYRAFIYWVNRLIPKQEIIRKQTSLGYFDRNLRGLSGSSTDHTEVPGSCYELDATVLDVHVVSEIRRNHVLGRPTLYLIIDKESRMIVGIHVSMEFASWRAGRQALVNCASSKKEYCAQFGIKIEDKDWPCNHIPQRLLCDRGEFICQNAEDLAVPLIGHLSIAPPYRADRKGTIEQRFNMLNKRLNHELQGTTLGRPSTRGDRDPRADAIFTLKEVTTLLIDEVLSLNRQYLDSLGGQSRLFIESGNKPCPLNYWNFHLDKHLHALNKVNEAEVRSRLLPVETVSIARQLP
>NC_009052.1|WP_011839977.1|5056746_5058249_-|IS21-like-element-ISSba11-family-transposase
MPGHRITDQQIRLFMSKRKDHLQVTAASKAGISERSARRIESGQRQLGPSKPRNYRTRTDPLELVWDPVVLPLLQLSDTITPVGVFDYLCEEYSDVFAVTLRRTLERRIQKWRQINGQDKEVIFRQVKEFGQLGIMDFTWADFIVTIRGTTLKHRFFNYRLPASGWSYVQVVYGGESFVAVATGLQNAFEQSNGVPQEVRTDSLSAAYKNHSNETLFTERFSELSIHYGFKPSKNNTGIAHENGAIESANNHLKNQIRQALAIRGSSDFDSIDEYETFIDDVVQRRNRRIMALLIDEQRQLQPLPKFESVNYEIYPVKVSSTSTFQLKRVTYSVPSRLVGATLRVHLFDKKLDIYCHGVHTATLTRVHASANNRGHQINYRHLIGALMKKPRAFRGGQWRDQLLPNEDYRQIWKNVDALLSADEASLYMVRLLNIASKSDREEAVGRFVLEGINLGQRPNIVDCEERFLKDEEWEFNPKVQQHSLASYQQILDEVNEYVS
>NC_009052.1|WP_011839978.1|5056010_5056757_-|ATP-binding-protein
MSVETLPIILKELRLVSLLPHWQPLAEKAREQHWPVERYLAELCQLELSCREQKRLHRGLKEATLPIGKYLDTYDFSEVEGLSKKQVWHLADNAEWLKTGDNILLFGASGLGKTHIAAGLGYRLVEQGHRVKFMSASLLVQHLQKAKEELRLPEALVKLDRFAVLILDDLGYVQKSTEETSVLFELIAHRYERYSLIITSNQSFEDWDKLFSDTVMTVAAIDRLIHHAKILQCKGESYRRKEAQNKLN
>NC_009052.1|WP_150100093.1|5055386_5055941_-|hypothetical-protein
MTSKGIRLNDDMYYECDRPEFEDWKTIARSGARWSMEARIDQDNSSFIYVRLQKMEGFTRCTLMLQSSSLEGLHRADVLFFEDWKKLEKIRAKPDTKSVEQHQRRKAIVKHAQGEAKNAPPLSSKVERTRGMKERRREVIEEARLSSSSAKVERKNEETNYVEQWSEERNKKVVSLLKRKKDND
>NC_009052.1|WP_011848263.1|5053950_5055387_-|ATP-binding-protein
MYVENACYQKAILPEHVGNALIESLPKKLTDEELVDKLANYPKCLTEDTQNDPEIRAEYLTRIKRLRQPQLVYFDVFRAVEIAIKDGYSAKNPLSPTTMNYLHYSLEDRPIIEPNTGFFKPKGCGITIIGESGVGKTSMLEQVLSIYPDVIKHQSYSGMSLPLTQVVWLKVDCPDDSSVKGLCHRILDEIDRKLDIKDTKPQNTIALLIKQIEAKMKSNYLGILVIDEMQNLNTAKAGGAERLLGFLHNLMNNLGIPILFCANPPFDKLLSKTLKAARRAESGGYFDIGLLKNSEDEWGLFVDELWKLQWTNVQTPLTQDLSDRLFNLSVGNMDLAVRIFYASQRAVIGSLNERITTDVLDKGASIAIRASKSTTDELRLSLLKRKNESKKETPNNEASEEAKVITESKGKFVTIPGDLSRPHHPEFAERITELQYEDDLHALIEDPALIQRASEEEHPLDMLKSAGLFCEDPLKTFG
>NC_009052.1|WP_011848262.1|5052506_5053940_-|TniQ-family-protein
MLLPPLLPDELLLGRLIRYLAISGDEVGAFCEKAFGSNRISLHPLLTAGIEHLSHAVGESPEELLNQQTLAPLFLFYLPGHASNLKKYLLANEGAKALRESQLPSYGHGGSVCLKWCQLCAKQDIQSYGMTYWHRAHQIPGVIACYKHQVLLGNIALEERKHRFDAGLPPLRNEVTRTALDIEYRVAKFSQQLTLVLMKAPPVIELSSVYRWRLADLGFITSGGRVRRQLLMRQFITWVGSYHSGPDTPLPNDIKDYRYLSELLNPKTSHHPFRHLLFASWLFSHPNEIFKQKQSEPNVALVKPSLIKTKAQQLENKCLKLLEENRSMAEVSRLTGKSRCYLKRIALQHGIKLNLKPRQLTSELKSKIVHLALSGMHRELISERCGIGIGSIEQVISSVSGLVDWRKKCHFESVRRRYRLEIQRYMLENHDAIRRDIKSDCNSAFFWLYLYDRHWLDSALPSPAKPIGHGEYVLNSD
>NC_009052.1|WP_086011359.1|5050418_5051974_-|IS3-like-element-ISSba13-family-transposase
MARYSPERKEAILKKLLPPHNLTVAEVAREEGIAVQTLYHWRDIARKEGRPVPGKTLTADDWSAEAKFAVLIETAPLSEAEISQYCREKGLYREQVQQWKLECLSGFQTSEVQTKTIKQQAKADKAEIKSLQRELRYKEKALAEAAALLVLRKKPQCALGGRQRGELTPLPERIALIALIQEAYTQGARLYKACAETGLSKRTYRRWYREGQVQADLRPTAARPEPANKLEEHERQQILSVCNQAEYASLPPSQIVPTLLDNGIYIASESSFYRVLNAHGQLNHRGRTQATVNRSKPLSYRADGPNQVWSWDITYLASTVKGQFYYLYLFEDIYSRKIVGYEVHEQENGEYAAALIQRSLLREQCFNTPLVLHSDNGAPMKSLTMKAKLEELGITASLSRPRVSNDNPFSESLFKTLKYRPQWPASGFSCLATAREWVEKFVSWYNDEHKHSQLNFVSPGQRHALQDGAILAKRKKVLEAAKERKPMRWSTEIRNCEAVGAVTLNPDKAPVEGVINAA
>NC_009052.1|WP_011848261.1|5049836_5050208_-|hypothetical-protein
MPEIDSNEPRAVSVGIRAVLKILEKWSCDQQQVKALLKLPENYNDLDFEHENFSLEQVERVRCILNIHASLRTLFTNPENVYGFMSMVNHNSPFNGSTPLNFILNDKAYNFQLVIKHLESQLY
>NC_009052.1|WP_011848260.1|5049082_5049301_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLMFRELPNVYLHRAPVDFRQSINGLAVIVEQQLSLSATDGSVFVFCNKARDKLKILYWDNTGFALWYKRLE
>NC_009052.1|WP_011848267.1|5060873_5062058_-|NAD(P)/FAD-dependent-oxidoreductase
MKHHDVIIIGAGAAGLMCAATAGYRGRDVLVLDNAKQAGRKILISGGGRCNFTNLKVEPANFLCGNPHFVKSALARYPSQQFIELVERHGIEYHERDHGQLFCNDSAKEIVTMLLTECEWAGVTIKLRTDILAVKKTEAGRFELNTSNGELSCDSLVIATGGLSMPKLGATPYGYQLAEQFGLKVLTTHAGLVPFTWHSEDKIRFEPLSGIAVPSRITAKDGTAFSEALLFTHRGLSGPAILQISNYWKAGETIEIDLLPNMDLAQLLEQQLTAHPKQSLRNTLSQWLPKRLVEVLFDEALLNKALNQLVHAERAKLVDDLHRWTLLMNGTEGYRTAEVTLGGIDSNELSSKTMEASKVAGLYFIGEVMDVSGWLGGFNFQWAWASGVAAGQAV
>NC_009052.1|WP_011848268.1|5062248_5063265_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPVHMQTLAQDKCNQAFLPGIAFPDCLQIEADLAKALAASNNVLVVVPSHVFGTVLEQAKPLLRSDARIVWATKGLEPETGRLLQDVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCPTFTNYLVELLHSPKRLRVYANDDFTGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGANAATFMGMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVMTAQAEIGQVVEGYRNTKEVFTLAKRLGVEMPITEQIYQVLYQGKSPVDAAKELLSREKKSETPAQ
>NC_009052.1|WP_011848269.1|5063269_5063755_-|protein-export-chaperone-SecB
MAEVANNEQQAPQFNIQRVYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSAKLADDVYEVVLSLTVTAQNGGDTAFLCEVQQAGIFSITGLTEPQLAHSLGAYCPNFLFPYARETVGSLVGRGTFPQLNLAPVNFDALFAQYVQQRQAAATAPAAEEANA
>NC_009052.1|WP_006083779.1|5064050_5064485_-|rhodanese-like-domain-containing-protein
MQEYIEFFKAHSMLSLAWVGLFVVLVASIIKSSMSKIKSISHQELTIMVNRQDAKVVDVRSNDEFRKGHIVDAINVTLADIKNNQISALEKFKASPIILVCNAGMTSSQAAQLLSQQGFENLYNLKGGMGEWQAANMPVSKSKR
>NC_009052.1|WP_006084808.1|5064752_5066297_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTAKRPLALLILDGWGYRENTHNNAIFHANTPVLDRLNAQYPHSLISGSGLDVGLPDGQMGNSEVGHINLGSGRVVYQELTRISKAIADHEFEQNPALCDAVDSAIKAGGAVHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFDDLFTTLGHGRIASIIGRYFAMDRDNRWDRVSQAYDLITQGKSKFQYDNAVTALEAAYERNENDEFVSSSAITDADGQVATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPIAYPSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEGEDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTGQAHTAHTSELVPFVFVGRNATIDEGGKLSDVAPTILTLIGEAIPAEMTGKPLIHIKE
>NC_009052.1|WP_014620909.1|5066307_5067441_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MSTRLLVKASILAGFMMLSFSANASDLEKRQSELKSIQTQINQQQSALKNTSKQREKLLSLLRSDEEAIASAAKKVNSTKNSLAQIDTKLIELKQRQDELETLKVSQQQTLSKQLSSAYLAGNHDYTKMMLNQQSPATIERMLAYYQYLNKARMKSINELKQTLTELDEIKVSQTSKQKQLTKLVAEQQVQAKRLSQEQDQRQLTIKELQRTLNSKGAELEQLQIEEASLKRVVEQALRAMKDNPSMEGFGKQSGKLKWPTKGRVSANFGSQRSGQVVWKGTMLSAPEGQNIRAVSGGKVIYADWLRGFGLVMVIDHGKGYMSLYGHAQTLLKSPGDMVKSGEAIALVGRSGGQSEAGLYFEIRHKGQAVDPAKYCR
>NC_009052.1|WP_011848272.1|5067473_5068679_+|S41-family-peptidase
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEELVQAAIKGIFEHLDPYSSFLNHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSPAEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQSIKLVLKHSNDDATFEVSLKPSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGLLDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKGTVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIKIAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHHD
>NC_009052.1|WP_011848273.1|5068691_5069447_+|divergent-polysaccharide-deacetylase-family-protein
MRLLYSLALLALSISQSHAAQIALIIDDIGYRHTDQAVLALPSTVTLSVLPHTPLGEELANAGHKKGHEIMLHLPMQALNGKALGLGGLTNTMTEAQIRASVVDAINSVPFAKGANNHMGSLLTQLDDPMLWIMETLKQKHLYFIDSMTTRFTKAGETADQLGVPLLKRQLFLDNDTSAKALERQFNLMISQAHTQGNLVAIAHPYPETMRFLKANLQRLKTEGIDLVPASSLLPIGIAHKNGTNPAVTLR
>NC_009052.1|WP_006083784.1|5069421_5069877_-|Rrf2-family-transcriptional-regulator
MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIRGKMGGFRLGKPASEINLGQLVRVLENSLAPIDCSKPYCRFTPACKLKGVLAQAVEAYLNVLDQYTLLDIVSNRDELLALLPDMSISVLQLD
>NC_009052.1|WP_006084804.1|5069899_5070154_-|YkgJ-family-cysteine-cluster-protein
MNCRLGCGACCIAPSISSSIPGMPNGKAAGERCVQLSDANLCLIFGSPDRPAVCSDFDASEDVCGHSNEEALWLITQLEAQTSH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009052_2	2.1\|5060817\|28\|NC_009052\|CRISPRCasFinder	5060817-5060844	28	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	246254-246281	6	0.786

1. spacer 2.1|5060817|28|NC_009052|CRISPRCasFinder matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 6, identity: 0.786

taaacttatgtacaaactttactgttta	CRISPR spacer
gaaacatttgtacaaactttactgtgcc	Protospacer
 **** * ***************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1214581 : 1287932

Acinetobacter_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011846080.1\|1214581_1217404_+\|tRNA	isoleucine--tRNA ligase	A0A2K9V7W4	Bandra_megavirus	1.1e-81	26.3
WP_011846081.1\|1217413_1217929_+	signal peptidase II	NA	NA	NA	NA
WP_011846082.1\|1217925_1218348_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_170927454.1\|1218376_1219306_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_011846083.1\|1219491_1220079_+	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_006080641.1\|1220093_1221062_+	PilW family protein	NA	NA	NA	NA
WP_011846084.1\|1221074_1221536_+	pilus assembly PilX N-terminal domain-containing protein	NA	NA	NA	NA
WP_011846085.1\|1221538_1225045_+	type IV pilin biogenesis protein	NA	NA	NA	NA
WP_011846086.1\|1225056_1225449_+	type IV pilin protein	NA	NA	NA	NA
WP_011846087.1\|1225445_1225751_+	TapY2 family type IVa secretion system protein	NA	NA	NA	NA
WP_011846088.1\|1225842_1226337_-	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_011839977.1\|1226696_1228199_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011839978.1\|1228188_1228935_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011846089.1\|1228943_1229399_-	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_006080649.1\|1229640_1229979_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_011846090.1\|1230238_1231528_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011846091.1\|1231592_1232609_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_086011358.1\|1233787_1234947_-\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.9e-49	35.9
WP_011845808.1\|1236888_1237830_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011846094.1\|1238089_1238794_+	SapC family protein	NA	NA	NA	NA
WP_011846095.1\|1238814_1240356_+	tryptophan 7-halogenase	A0A1Z1LWL6	Synechococcus_phage	7.7e-66	35.9
WP_011846096.1\|1240410_1241937_-	tryptophan 7-halogenase	M4SKV1	Cyanophage	1.6e-52	31.3
WP_011846097.1\|1241951_1242869_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011846098.1\|1243365_1244439_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011846099.1\|1244438_1245926_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-31	27.6
WP_011846100.1\|1248975_1249911_+	ATPase	NA	NA	NA	NA
WP_006084998.1\|1249928_1250927_+	SIS domain-containing protein	NA	NA	NA	NA
WP_011846101.1\|1251102_1252239_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_011846102.1\|1252417_1253581_+	DUF5009 domain-containing protein	NA	NA	NA	NA
WP_011846103.1\|1253898_1255197_+	sugar MFS transporter	NA	NA	NA	NA
WP_011846104.1\|1255299_1256022_-	hypothetical protein	NA	NA	NA	NA
WP_006085005.1\|1256205_1256571_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011846105.1\|1256601_1258092_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011846106.1\|1258161_1259526_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_011846107.1\|1259805_1261302_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011846108.1\|1262012_1262936_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	6.9e-147	81.1
WP_041408871.1\|1263482_1263806_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_086011359.1\|1263850_1265405_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011846109.1\|1265402_1265810_+	hypothetical protein	NA	NA	NA	NA
WP_011846110.1\|1266730_1267144_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.5e-16	55.0
WP_011846113.1\|1268321_1268834_+	DUF2937 family protein	NA	NA	NA	NA
WP_011846114.1\|1269090_1270398_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_006080693.1\|1270634_1271183_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011846116.1\|1271896_1272658_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_006080696.1\|1272660_1274016_+	glutamine synthetase	NA	NA	NA	NA
WP_006085019.1\|1274616_1275717_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006080699.1\|1275895_1277032_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-27	36.6
WP_006080701.1\|1277028_1277934_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_006080702.1\|1277930_1278746_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_006085020.1\|1279008_1280295_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011846117.1\|1280345_1281794_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011846118.1\|1281826_1283104_+	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	5.2e-28	28.4
WP_011846119.1\|1283253_1284261_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_041410763.1\|1285073_1286627_-	peptide MFS transporter	NA	NA	NA	NA
WP_086011368.1\|1286772_1287932_-\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.6e-50	35.9

DBSCAN-SWA_2

1392750 : 1512619

111

Pseudoalteromonas_phage(45.95%)

tail,plate,transposase,capsid,head,holin,tRNA,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006080790.1\|1392750_1393497_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_006080791.1\|1393531_1393885_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_006085074.1\|1394145_1395237_+	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	2.0e-81	48.3
WP_012588257.1\|1395264_1396404_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_011846173.1\|1396620_1398285_+	hydroxylamine reductase	NA	NA	NA	NA
WP_014620643.1\|1398416_1399601_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_006080796.1\|1399766_1400102_+	hypothetical protein	NA	NA	NA	NA
WP_011846175.1\|1400145_1401450_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	5.9e-27	35.3
WP_011846176.1\|1401614_1403609_-	chorismate mutase	NA	NA	NA	NA
WP_006080799.1\|1405398_1405755_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_011846177.1\|1406054_1406747_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_006080801.1\|1406822_1407272_-	cytochrome c	NA	NA	NA	NA
WP_011846178.1\|1407462_1407738_+	trp operon repressor	NA	NA	NA	NA
WP_011846179.1\|1407802_1408174_-	hypothetical protein	NA	NA	NA	NA
WP_006085085.1\|1408410_1409067_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011846180.1\|1409708_1412177_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_011846181.1\|1412173_1413136_+	homoserine kinase	NA	NA	NA	NA
WP_011846182.1\|1413248_1414532_+	threonine synthase	NA	NA	NA	NA
WP_014620644.1\|1414896_1415199_+	hypothetical protein	NA	NA	NA	NA
WP_011846184.1\|1415488_1416346_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011846185.1\|1416742_1420027_+	S41 family peptidase	NA	NA	NA	NA
WP_011846186.1\|1420133_1420562_-	hypothetical protein	NA	NA	NA	NA
WP_011846187.1\|1420792_1421230_-	OsmC family protein	NA	NA	NA	NA
WP_006080813.1\|1421337_1421688_-	DUF3325 domain-containing protein	NA	NA	NA	NA
WP_014620646.1\|1421684_1423382_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_011846189.1\|1423383_1423767_-	DUF3649 domain-containing protein	NA	NA	NA	NA
WP_011846190.1\|1424195_1425764_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-32	31.8
WP_006085098.1\|1426012_1426369_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_011846191.1\|1426461_1426986_-	hypothetical protein	NA	NA	NA	NA
WP_011846192.1\|1427081_1427732_-	response regulator transcription factor	NA	NA	NA	NA
WP_011846193.1\|1427761_1428940_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_011846194.1\|1429123_1429618_+	DUF2141 domain-containing protein	NA	NA	NA	NA
WP_011846195.1\|1429632_1431303_+	carotenoid oxygenase family protein	NA	NA	NA	NA
WP_006085103.1\|1431367_1432090_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011846196.1\|1432525_1434094_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.3e-16	37.3
WP_006080825.1\|1434427_1434652_+	TIGR02922 family protein	NA	NA	NA	NA
WP_011846197.1\|1435058_1435640_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011846198.1\|1435773_1436841_+	alkene reductase	NA	NA	NA	NA
WP_011846199.1\|1436915_1439333_-	ATP-binding protein	NA	NA	NA	NA
WP_011846200.1\|1439868_1442634_+	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	2.5e-22	34.5
WP_011846201.1\|1442789_1444025_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.2e-49	34.1
WP_086015430.1\|1444280_1445820_+\|transposase	IS3-like element ISSba15 family transposase	NA	NA	NA	NA
WP_011845885.1\|1447184_1448687_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011839978.1\|1448676_1449423_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_086011359.1\|1449842_1451397_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011846203.1\|1451692_1452034_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_011846204.1\|1452104_1452545_+	helix-turn-helix domain-containing protein	A0A0P0IRJ4	Acinetobacter_phage	3.8e-18	38.1
WP_011846205.1\|1452673_1453483_-	hypothetical protein	NA	NA	NA	NA
WP_086011359.1\|1453479_1455035_-\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011846206.1\|1455079_1455577_-	FRG domain-containing protein	Q9AZ51	Lactococcus_phage	1.4e-05	45.8
WP_011846207.1\|1455853_1456801_+\|transposase	IS30-like element ISSba17 family transposase	W5R8L2	Staphylococcus_phage	1.1e-41	36.0
WP_011846208.1\|1456754_1457372_-	hypothetical protein	NA	NA	NA	NA
WP_011845808.1\|1457504_1458446_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011846209.1\|1458481_1459183_-	phage repressor protein CI	A0A1D9C9M6	Salinivibrio_phage	8.7e-17	29.1
WP_011846210.1\|1459276_1459477_+	hypothetical protein	Q1I116	Pasteurella_virus	1.6e-08	43.3
WP_011846211.1\|1459592_1460159_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	2.7e-16	36.9
WP_014620653.1\|1460168_1460363_+	hypothetical protein	NA	NA	NA	NA
WP_011846212.1\|1460402_1460642_+	hypothetical protein	NA	NA	NA	NA
WP_011846213.1\|1460616_1460910_+	hypothetical protein	NA	NA	NA	NA
WP_011846214.1\|1460906_1461152_+	hypothetical protein	NA	NA	NA	NA
WP_011846215.1\|1461148_1461388_+	hypothetical protein	NA	NA	NA	NA
WP_011846216.1\|1461384_1461639_+	hypothetical protein	NA	NA	NA	NA
WP_011846217.1\|1461638_1463870_+	replication endonuclease	A0A2P1CKY6	Pseudoalteromonas_phage	9.0e-76	42.3
WP_014620656.1\|1464668_1464809_+	hypothetical protein	NA	NA	NA	NA
WP_011790175.1\|1464805_1465054_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	2.4e-22	63.0
WP_014620657.1\|1465126_1465396_+	hypothetical protein	NA	NA	NA	NA
WP_014620658.1\|1465632_1465887_+	prevent-host-death protein	NA	NA	NA	NA
WP_011846219.1\|1465897_1466254_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011846220.1\|1466278_1467319_-\|portal	phage portal protein	A0A1L5C2C1	Pseudoalteromonas_phage	4.9e-141	73.5
WP_011846221.1\|1467300_1469109_-\|terminase	terminase	A0A1L5C295	Pseudoalteromonas_phage	3.5e-288	79.7
WP_011846222.1\|1469312_1470239_+\|capsid	GPO family capsid scaffolding protein	A5X9H4	Aeromonas_virus	3.2e-35	42.3
WP_011846223.1\|1470288_1471332_+\|capsid	phage major capsid protein, P2 family	A0A1L5C2B0	Pseudoalteromonas_phage	2.3e-130	69.1
WP_011846224.1\|1471409_1472000_+	hypothetical protein	NA	NA	NA	NA
WP_080514410.1\|1472041_1472692_+	hypothetical protein	A0A1L5C2B7	Pseudoalteromonas_phage	5.7e-71	72.1
WP_011846226.1\|1472847_1473309_+\|head	head completion/stabilization protein	A0A1L5C2A5	Pseudoalteromonas_phage	2.3e-50	69.3
WP_011846227.1\|1473305_1473794_+\|tail	phage tail protein	A0A1L5C2C9	Pseudoalteromonas_phage	6.0e-57	68.2
WP_011846228.1\|1473790_1474453_+	hypothetical protein	A0A1L5C2C4	Pseudoalteromonas_phage	6.6e-75	65.9
WP_011846229.1\|1474455_1475562_+	DUF2586 family protein	A0A1L5C2B3	Pseudoalteromonas_phage	1.2e-158	76.8
WP_011846230.1\|1475574_1476024_+	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	2.7e-64	81.9
WP_011846231.1\|1476037_1476241_+	TraR/DksA C4-type zinc finger protein	D9I650	Acinetobacter_virus	6.4e-05	52.4
WP_011846232.1\|1476242_1476734_+	lysozyme	A0A1S5R1I9	Pseudomonas_phage	1.1e-45	59.1
WP_011846233.1\|1476717_1477275_+	hypothetical protein	NA	NA	NA	NA
WP_011846234.1\|1477325_1477616_+	hypothetical protein	NA	NA	NA	NA
WP_011846235.1\|1477612_1477879_+	hypothetical protein	A0A1L5C2C7	Pseudoalteromonas_phage	1.6e-24	62.5
WP_011846237.1\|1478081_1479854_+\|tail	phage tail tape measure protein	A0A1L5C2B2	Pseudoalteromonas_phage	1.1e-185	61.4
WP_011846238.1\|1479850_1480183_+	DUF2590 family protein	A0A1L5C2D6	Pseudoalteromonas_phage	1.0e-36	75.2
WP_011846239.1\|1480182_1481385_+\|plate	baseplate J/gp47 family protein	A0A1L5C2D1	Pseudoalteromonas_phage	5.2e-171	75.4
WP_011846240.1\|1481381_1482014_+	hypothetical protein	A0A1L5C2C5	Pseudoalteromonas_phage	1.9e-63	66.5
WP_011846241.1\|1482031_1484338_+\|tail	phage tail protein	A0A1L5C2D7	Pseudoalteromonas_phage	7.1e-100	61.0
WP_041409088.1\|1484341_1484836_+	hypothetical protein	A0A1L5C2B6	Pseudoalteromonas_phage	8.7e-48	66.9
WP_041409090.1\|1484838_1485528_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	3.8e-73	51.3
WP_006080832.1\|1487365_1487857_-	SsrA-binding protein SmpB	NA	NA	NA	NA
WP_006080833.1\|1488135_1488573_+	ubiquinone-binding protein	NA	NA	NA	NA
WP_006080834.1\|1488562_1488895_+	RnfH family protein	NA	NA	NA	NA
WP_037390996.1\|1489009_1489534_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_011846247.1\|1489930_1490722_+	hypothetical protein	NA	NA	NA	NA
WP_011846248.1\|1490781_1490997_+	hypothetical protein	NA	NA	NA	NA
WP_011846249.1\|1491045_1492791_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_011846250.1\|1493125_1494895_+	cation:proton antiporter	NA	NA	NA	NA
WP_011846251.1\|1495023_1497489_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011846252.1\|1498348_1499998_+	malate synthase A	NA	NA	NA	NA
WP_011846253.1\|1500138_1501464_+	isocitrate lyase	NA	NA	NA	NA
WP_006080843.1\|1502267_1502636_+	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	5.5e-31	54.7
WP_006080844.1\|1502716_1502923_-	hypothetical protein	NA	NA	NA	NA
WP_006080845.1\|1503212_1503578_-	hypothetical protein	NA	NA	NA	NA
WP_011846254.1\|1504426_1505575_-	L-threonine dehydrogenase	NA	NA	NA	NA
WP_011846255.1\|1506165_1507107_-\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_006080847.1\|1507269_1507875_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_011846256.1\|1507865_1509329_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011846257.1\|1509338_1511024_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	5.6e-46	27.7
WP_006080850.1\|1511401_1512619_+\|holin	choline transporter	NA	NA	NA	NA

DBSCAN-SWA_3

1838852 : 1918454

Ralstonia_phage(12.5%)

transposase,protease,integrase,tRNA

attL 1829003:1829062|attR 1913100:1914178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1829003:1829062	attL	NA	NA	NA	NA
WP_011839977.1\|1838852_1840355_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_190272047.1\|1840394_1842074_-	site-specific DNA-methyltransferase	I7KLR2	Campylobacter_virus	6.6e-47	43.8
WP_011846445.1\|1842460_1843063_-	mobile mystery protein B	NA	NA	NA	NA
WP_011846446.1\|1843059_1843572_-	mobile mystery protein A	NA	NA	NA	NA
WP_011846447.1\|1843954_1845310_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	6.2e-19	26.4
WP_011846448.1\|1845306_1846437_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	1.3e-30	29.4
WP_011846449.1\|1846564_1847194_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_011846450.1\|1847366_1847972_-	hypothetical protein	NA	NA	NA	NA
WP_011846451.1\|1848188_1850276_-	MtrB/PioB family decaheme-associated outer membrane protein	NA	NA	NA	NA
WP_011846452.1\|1850288_1851290_-	DmsE family decaheme c-type cytochrome	NA	NA	NA	NA
WP_011846453.1\|1851358_1853311_-	cytochrome c	NA	NA	NA	NA
WP_011846454.1\|1853652_1855845_-	OmcA/MtrC family decaheme c-type cytochrome	NA	NA	NA	NA
WP_011846455.1\|1856093_1858013_-	OmcA/MtrC family decaheme c-type cytochrome	NA	NA	NA	NA
WP_011846456.1\|1858048_1860199_-	MtrB/PioB family decaheme-associated outer membrane protein	NA	NA	NA	NA
WP_011846457.1\|1860212_1861178_-	DmsE family decaheme c-type cytochrome	NA	NA	NA	NA
WP_006081114.1\|1861613_1861853_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_011846458.1\|1861845_1864140_+	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
WP_011846459.1\|1864355_1866026_+\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	5.5e-243	73.3
WP_006081117.1\|1866222_1866819_-	YIP1 family protein	NA	NA	NA	NA
WP_011846460.1\|1867102_1867873_+\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_011846461.1\|1867999_1868722_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_006081120.1\|1868731_1869226_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_011846462.1\|1869366_1870746_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	3.0e-45	25.7
WP_011846463.1\|1870896_1871751_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.0e-28	33.0
WP_006085365.1\|1872730_1874035_+	trigger factor	NA	NA	NA	NA
WP_006081124.1\|1874124_1874733_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.7e-56	57.4
WP_006081125.1\|1874817_1876098_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.6e-131	56.2
WP_011846464.1\|1876230_1878585_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.3e-221	52.5
WP_006081127.1\|1878844_1879117_+	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.2e-22	61.8
WP_011846465.1\|1879342_1881208_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_006085368.1\|1881397_1881610_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_011846466.1\|1881752_1882955_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_011846467.1\|1883060_1883846_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.3e-18	32.7
WP_006081132.1\|1883826_1884834_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_006081133.1\|1884837_1885728_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_011846468.1\|1885714_1886746_-	ABC transporter permease	NA	NA	NA	NA
WP_011846469.1\|1886745_1888371_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_011846470.1\|1888440_1889532_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_006081137.1\|1889709_1890393_+	phage shock protein PspA	NA	NA	NA	NA
WP_006081138.1\|1890410_1890650_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_006081139.1\|1890636_1891023_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_011846472.1\|1891136_1892597_+	YcjX family protein	NA	NA	NA	NA
WP_011846473.1\|1892593_1893814_+	TIGR01620 family protein	NA	NA	NA	NA
WP_011846474.1\|1894148_1895342_+	methionine gamma-lyase	NA	NA	NA	NA
WP_006085377.1\|1895569_1895938_+	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_006081144.1\|1896549_1896840_-	late competence development ComFB family protein	NA	NA	NA	NA
WP_011846475.1\|1896873_1897782_-	histone deacetylase	A0A2K9L2T7	Tupanvirus	7.1e-11	25.3
WP_006085379.1\|1897811_1898501_-	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_006081147.1\|1898511_1899174_-	primosomal replication protein	NA	NA	NA	NA
WP_011846476.1\|1899170_1899944_-	TSUP family transporter	NA	NA	NA	NA
WP_011846477.1\|1899953_1902026_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	4.3e-48	24.8
WP_011846478.1\|1902146_1904576_+	DNA polymerase II	A0A1S5Y2Z1	uncultured_archaeal_virus	1.6e-30	26.0
WP_011846479.1\|1904799_1906011_+	porin	NA	NA	NA	NA
WP_006081154.1\|1910000_1912817_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	8.5e-39	24.7
WP_011845808.1\|1913202_1914144_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011839978.1\|1916215_1916962_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
1913100:1914178	attR	NA	NA	NA	NA
WP_011839977.1\|1916951_1918454_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2172429 : 2250402

Bodo_saltans_virus(10.0%)

transposase,integrase,tRNA

attL 2173884:2173898|attR 2247819:2247833

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014620703.1\|2172429_2173413_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.9e-31	41.4
WP_011846634.1\|2173428_2175816_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
2173884:2173898	attL	NA	NA	NA	NA
WP_006081370.1\|2175819_2176116_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.3e-11	37.8
WP_011846635.1\|2176220_2177162_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_011846636.1\|2177464_2178250_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_014620704.1\|2178246_2178594_+	GFA family protein	NA	NA	NA	NA
WP_011846638.1\|2178769_2179123_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_011846639.1\|2179122_2180139_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_011846640.1\|2180131_2181271_-	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_011846641.1\|2181334_2181580_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_011846642.1\|2181579_2182425_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_041410802.1\|2182615_2185027_-	carbamoyltransferase HypF	NA	NA	NA	NA
WP_011846644.1\|2185121_2187032_-	Ni/Fe hydrogenase	NA	NA	NA	NA
WP_011846645.1\|2187035_2187593_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_006081382.1\|2187600_2188275_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
WP_011846646.1\|2188294_2189998_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_011846647.1\|2190001_2191138_-	hydrogenase small subunit	NA	NA	NA	NA
WP_006081385.1\|2191524_2191992_+	TlpA family protein disulfide reductase	A0A1J0GW78	Streptomyces_phage	2.3e-05	38.8
WP_011846648.1\|2191995_2192214_+	DUF4266 domain-containing protein	NA	NA	NA	NA
WP_011846649.1\|2192338_2193658_+	DUF3570 domain-containing protein	NA	NA	NA	NA
WP_014620708.1\|2193788_2194697_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_006081389.1\|2194731_2195391_+	response regulator transcription factor	NA	NA	NA	NA
WP_011846651.1\|2195474_2196872_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_011846652.1\|2197363_2198992_+	glucan biosynthesis protein G	NA	NA	NA	NA
WP_011846653.1\|2199015_2201199_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA
WP_011846654.1\|2201429_2202995_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_011846655.1\|2203149_2203698_+	DUF882 domain-containing protein	NA	NA	NA	NA
WP_011846656.1\|2203648_2204083_-	hypothetical protein	NA	NA	NA	NA
WP_014620709.1\|2204098_2204281_-	hypothetical protein	NA	NA	NA	NA
WP_006081398.1\|2204386_2204674_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_011846657.1\|2204842_2208868_-	translocation/assembly module TamB	NA	NA	NA	NA
WP_011846658.1\|2208864_2210718_-	outer membrane protein assembly factor	NA	NA	NA	NA
WP_011846659.1\|2210838_2211870_+	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA
WP_011846660.1\|2212210_2213500_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_006081403.1\|2213673_2214090_+	CBS domain-containing protein	NA	NA	NA	NA
WP_011846661.1\|2214206_2218088_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	8.7e-58	33.3
WP_011846662.1\|2218882_2219041_+	nitrate reductase	NA	NA	NA	NA
WP_011846663.1\|2219083_2219341_+	chaperone NapD	NA	NA	NA	NA
WP_011846664.1\|2219343_2221833_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_011846665.1\|2221843_2222329_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_011846666.1\|2222337_2222925_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_011846667.1\|2223275_2223641_+	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_006081411.1\|2223938_2225339_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	1.7e-80	36.0
WP_006081412.1\|2225488_2225824_+	hypothetical protein	NA	NA	NA	NA
WP_006081413.1\|2225868_2226456_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_011846668.1\|2226487_2227900_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	4.6e-49	44.2
WP_011846669.1\|2228019_2229564_+	fumarate hydratase	NA	NA	NA	NA
WP_011846670.1\|2229886_2231935_+	S9 family peptidase	NA	NA	NA	NA
WP_011846671.1\|2232398_2232857_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011846672.1\|2233019_2233964_+	M14 family metallocarboxypeptidase	NA	NA	NA	NA
WP_011846673.1\|2234201_2236805_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_006086441.1\|2237123_2237756_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_011839978.1\|2240360_2241107_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|2241096_2242599_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011846675.1\|2242798_2244073_-\|integrase	tyrosine-type recombinase/integrase	A0A1I9KF78	Aeromonas_phage	2.8e-13	24.7
WP_014620713.1\|2244078_2244267_-	excisionase family protein	NA	NA	NA	NA
WP_086011358.1\|2244754_2245914_-\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.9e-49	35.9
WP_011846676.1\|2246011_2246593_+\|integrase	integrase	NA	NA	NA	NA
WP_086011359.1\|2246637_2248192_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
2247819:2247833	attR	NA	NA	NA	NA
WP_086010626.1\|2249225_2250402_+\|transposase	IS3-like element ISSba5 family transposase	Q716C2	Shigella_phage	2.0e-119	65.5

DBSCAN-SWA_5

2326386 : 2374144

Acinetobacter_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086011358.1\|2326386_2327545_+\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.9e-49	35.9
WP_086011358.1\|2328105_2329265_-\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.9e-49	35.9
WP_011846733.1\|2330466_2331432_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_011846734.1\|2332165_2333761_+	DUF3369 domain-containing protein	NA	NA	NA	NA
WP_014620722.1\|2333774_2335469_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_041409120.1\|2335970_2337158_+	porin	NA	NA	NA	NA
WP_011846737.1\|2337231_2337807_+	FMN-binding protein	NA	NA	NA	NA
WP_011846738.1\|2337836_2338637_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_011846739.1\|2339010_2339268_+	prevent-host-death protein	NA	NA	NA	NA
WP_011846740.1\|2339269_2339617_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011839978.1\|2339981_2340728_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|2340717_2342220_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011846743.1\|2342994_2344947_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_041410771.1\|2344939_2345851_+	HesA/MoeB/ThiF family protein	A0A1V0SCZ9	Indivirus	1.6e-07	28.2
WP_006081758.1\|2345867_2346071_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_006081757.1\|2346072_2346837_+	thiazole synthase	NA	NA	NA	NA
WP_011846745.1\|2346833_2347949_+	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_011846746.1\|2348051_2348315_+	hypothetical protein	NA	NA	NA	NA
WP_011846747.1\|2348320_2350822_+	protein-glutamate methyltransferase	NA	NA	NA	NA
WP_006081753.1\|2350999_2351908_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011846748.1\|2352111_2353974_-	peptidase M3	NA	NA	NA	NA
WP_011846749.1\|2353948_2354893_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_011846750.1\|2354895_2356401_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_011846751.1\|2356742_2357486_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011846752.1\|2357520_2358516_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_006081747.1\|2358512_2359244_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_014620732.1\|2359394_2362205_+	transporter substrate-binding domain-containing protein	G3MA91	Bacillus_virus	3.4e-19	31.5
WP_011846754.1\|2362389_2364168_+\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	5.3e-10	27.6
WP_011846755.1\|2364475_2365222_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_006081743.1\|2365342_2365864_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_006081742.1\|2365860_2366478_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_011846756.1\|2366525_2367530_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	8.1e-08	33.3
WP_011845808.1\|2368058_2369000_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011839978.1\|2371905_2372652_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|2372641_2374144_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2425878 : 2488044

uncultured_Caudovirales_phage(27.27%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086011359.1\|2425878_2427433_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011839977.1\|2428611_2430114_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011839978.1\|2430103_2430850_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011846790.1\|2431472_2432012_+	hypothetical protein	NA	NA	NA	NA
WP_011846791.1\|2432221_2432560_+	hypothetical protein	NA	NA	NA	NA
WP_011846792.1\|2432896_2434885_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	1.4e-56	38.6
WP_006081699.1\|2434877_2435153_+	hypothetical protein	NA	NA	NA	NA
WP_011846794.1\|2435240_2435792_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_011846796.1\|2437629_2438136_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011846797.1\|2440725_2442351_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_011846798.1\|2442622_2443651_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_014620725.1\|2443909_2446615_-	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_011846800.1\|2446890_2448033_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-10	32.5
WP_011846801.1\|2448047_2448338_+	STAS domain-containing protein	NA	NA	NA	NA
WP_011846802.1\|2448340_2449015_+	response regulator	NA	NA	NA	NA
WP_011845808.1\|2448974_2449916_-\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_080514418.1\|2450056_2451127_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_011846804.1\|2451130_2451496_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	3.6e-14	40.2
WP_011846805.1\|2451513_2453211_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_006086733.1\|2453221_2453734_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_011846807.1\|2453739_2455713_+	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-10	39.0
WP_011846808.1\|2455713_2456559_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_011846809.1\|2456545_2457166_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_011846810.1\|2457169_2458219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_011846811.1\|2458320_2459961_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.0e-17	34.5
WP_011846812.1\|2460349_2461030_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011846813.1\|2461019_2462081_+	HNH endonuclease	A0A2H4IZY3	uncultured_Caudovirales_phage	1.1e-10	37.6
WP_011846814.1\|2462148_2463045_+	NERD domain-containing protein	NA	NA	NA	NA
WP_011846815.1\|2463163_2464774_-	ABC-F family ATPase	A0A2K9L3Z8	Tupanvirus	2.5e-51	27.4
WP_011846816.1\|2465503_2466088_+	VF530 family DNA-binding protein	NA	NA	NA	NA
WP_011846817.1\|2467137_2467530_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014620726.1\|2468083_2469052_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011846819.1\|2469048_2470257_+	EAL domain-containing response regulator	NA	NA	NA	NA
WP_011846820.1\|2470246_2470558_+	hypothetical protein	NA	NA	NA	NA
WP_011846821.1\|2470547_2472506_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.3e-13	21.0
WP_011846822.1\|2472693_2473725_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	9.2e-15	30.4
WP_011846823.1\|2473994_2474783_+	hypothetical protein	NA	NA	NA	NA
WP_011846824.1\|2474883_2475834_-	hypothetical protein	NA	NA	NA	NA
WP_011846825.1\|2478219_2479389_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_006081665.1\|2479388_2479859_+	hypothetical protein	NA	NA	NA	NA
WP_011846826.1\|2480162_2482331_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_014620728.1\|2482680_2483139_+	hypothetical protein	NA	NA	NA	NA
WP_011845808.1\|2483215_2484157_-\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_006081662.1\|2485004_2485190_+	CsbD family protein	NA	NA	NA	NA
WP_006081661.1\|2485340_2485499_+	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_011839978.1\|2485805_2486552_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|2486541_2488044_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2503900 : 2512004

uncultured_Caudovirales_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011846838.1\|2503900_2505232_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.8e-78	38.8
WP_011846839.1\|2505224_2505599_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.8e-08	36.5
WP_011846840.1\|2505617_2506904_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.2e-100	46.0
WP_006081642.1\|2507190_2507529_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_006081641.1\|2507522_2507804_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_006081640.1\|2507803_2508160_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_006081639.1\|2508174_2508564_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-18	39.4
WP_011846841.1\|2508633_2509293_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.3e-34	43.9
WP_011846842.1\|2509714_2510617_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011846843.1\|2510732_2512004_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	5.1e-15	24.6

DBSCAN-SWA_8

2777364 : 2786016

Yellowstone_lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011846944.1\|2777364_2779083_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.2e-56	29.0
WP_006081846.1\|2779082_2779577_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_006081847.1\|2779676_2780120_-	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	3.7e-21	51.5
WP_006081848.1\|2780483_2780915_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_006081849.1\|2781113_2781281_-	hypothetical protein	NA	NA	NA	NA
WP_006081850.1\|2781498_2781696_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006081851.1\|2781809_2782715_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_006081852.1\|2782874_2783213_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011846945.1\|2783221_2785084_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.8e-102	38.2
WP_011846946.1\|2785151_2785676_-	co-chaperone HscB	NA	NA	NA	NA
WP_006081855.1\|2785692_2786016_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	46.3

DBSCAN-SWA_9

3030465 : 3108333

Bacillus_thuringiensis_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086011359.1\|3030465_3032020_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011847069.1\|3032510_3032738_-	DUF3389 family protein	NA	NA	NA	NA
WP_011847070.1\|3032991_3034935_+	M1 family metallopeptidase	NA	NA	NA	NA
WP_011847071.1\|3035130_3035619_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_006082098.1\|3037522_3037882_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_011847073.1\|3037933_3038575_+	hypothetical protein	NA	NA	NA	NA
WP_006082100.1\|3038747_3039692_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	3.1e-33	29.3
WP_011847074.1\|3040007_3040622_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006086177.1\|3040723_3041275_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011847075.1\|3041420_3042083_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011847076.1\|3042075_3042807_+	cupin domain-containing protein	NA	NA	NA	NA
WP_006082106.1\|3043627_3043801_+	hypothetical protein	NA	NA	NA	NA
WP_011847077.1\|3044101_3044362_+	hypothetical protein	NA	NA	NA	NA
WP_011847078.1\|3044434_3045439_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011847080.1\|3046136_3047078_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011847081.1\|3047074_3048103_-	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_011847082.1\|3048276_3049023_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011847083.1\|3049293_3049566_+	hypothetical protein	NA	NA	NA	NA
WP_011847084.1\|3049667_3051380_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.2e-28	25.9
WP_011847085.1\|3051519_3051900_-	hypothetical protein	NA	NA	NA	NA
WP_011847086.1\|3052177_3052639_+	EVE domain-containing protein	NA	NA	NA	NA
WP_011847087.1\|3052729_3053074_+	hypothetical protein	NA	NA	NA	NA
WP_011846606.1\|3053291_3054215_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.1e-148	81.8
WP_011847088.1\|3054650_3055925_+	membrane protein	NA	NA	NA	NA
WP_011847089.1\|3056072_3056867_-	TIGR00266 family protein	NA	NA	NA	NA
WP_011847090.1\|3057170_3058085_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011847091.1\|3058299_3059460_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_011847092.1\|3059557_3060598_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_011847093.1\|3060720_3061305_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_006082123.1\|3061663_3062287_+	LysE family translocator	NA	NA	NA	NA
WP_011847095.1\|3062446_3063859_-	N-acetyltransferase	NA	NA	NA	NA
WP_006086156.1\|3063967_3065707_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_011847096.1\|3066373_3066967_-	hypothetical protein	NA	NA	NA	NA
WP_011847097.1\|3066969_3067617_-	DUF5343 domain-containing protein	NA	NA	NA	NA
WP_086011359.1\|3069268_3070824_-\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011847100.1\|3072105_3074310_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	6.2e-45	25.3
WP_014620774.1\|3074793_3075270_+	hypothetical protein	NA	NA	NA	NA
WP_041409145.1\|3076029_3076413_+	hypothetical protein	NA	NA	NA	NA
WP_011847102.1\|3076626_3078771_-	M3 family metallopeptidase	A0A1V0SD92	Indivirus	3.6e-29	22.6
WP_011847103.1\|3079478_3081524_+	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
WP_011847104.1\|3081729_3082488_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_011847105.1\|3089045_3089594_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_006082136.1\|3090062_3090734_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_006082137.1\|3090825_3091893_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_011847106.1\|3091980_3092577_-	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_006085386.1\|3092810_3093497_-	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_011847107.1\|3093498_3095346_-	cyclic nucleotide-binding/CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	6.7e-08	30.7
WP_006082141.1\|3095561_3097298_-	cation acetate symporter	NA	NA	NA	NA
WP_006082142.1\|3097309_3097576_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_011847108.1\|3098218_3098839_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_011847109.1\|3098961_3099825_-	NAD-dependent dehydratase	NA	NA	NA	NA
WP_006082145.1\|3099881_3101087_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_014620776.1\|3101312_3101798_-	DUF2919 domain-containing protein	NA	NA	NA	NA
WP_011847111.1\|3102183_3103020_+	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_041410775.1\|3103016_3103922_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_011847113.1\|3103938_3105441_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011839978.1\|3105430_3106177_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011847114.1\|3106356_3107160_+	hypothetical protein	NA	NA	NA	NA
WP_086011358.1\|3107174_3108333_+\|transposase	IS3-like element ISSba3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.9e-49	35.9

DBSCAN-SWA_10

3646995 : 3658421

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011847430.1\|3646995_3649620_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.6e-66	36.7
WP_011847431.1\|3650252_3650666_-	regulatory protein RecX	NA	NA	NA	NA
WP_011847432.1\|3650740_3651808_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.4e-111	61.9
WP_011847433.1\|3652192_3654763_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	5.1e-30	23.1
WP_011847434.1\|3654981_3655962_-	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	3.8e-34	32.7
WP_011847435.1\|3656042_3656939_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_006082610.1\|3657039_3657675_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.4e-34	49.4
WP_006086855.1\|3657671_3658421_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-71	52.2

DBSCAN-SWA_11

3696297 : 3703893

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006082639.1\|3696297_3696777_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	47.0
WP_006082640.1\|3696907_3698011_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-68	39.7
WP_006082641.1\|3698077_3698734_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.7e-27	34.0
WP_011847460.1\|3698745_3699900_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.8e-51	36.0
WP_006082643.1\|3700046_3700496_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011847461.1\|3700782_3702036_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.2e-102	54.3
WP_011847462.1\|3702225_3703893_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.9e-39	28.0

DBSCAN-SWA_12

4091390 : 4170278

Planktothrix_phage(27.27%)

transposase,protease,integrase,tRNA

attL 4099508:4099522|attR 4168397:4168411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011847696.1\|4091390_4092305_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_012586871.1\|4092324_4093866_+	polynucleotide adenylyltransferase PcnB	G3MAR3	Bacillus_virus	5.4e-27	36.3
WP_011847698.1\|4093865_4094354_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_006082971.1\|4094410_4095205_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_011847699.1\|4095232_4096078_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_011847701.1\|4096755_4097283_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_011847702.1\|4097847_4098267_+	curlin	NA	NA	NA	NA
WP_011847703.1\|4098281_4099772_+	curlin	NA	NA	NA	NA
4099508:4099522	attL	NA	NA	NA	NA
WP_006082976.1\|4099945_4100611_-	response regulator transcription factor	NA	NA	NA	NA
WP_006085994.1\|4100996_4101605_-	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_011847705.1\|4101759_4102989_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-106	48.6
WP_011847706.1\|4103142_4104105_+\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_006082980.1\|4104236_4105253_-	two-component system response regulator	W8CYM9	Bacillus_phage	2.7e-11	32.2
WP_011847707.1\|4105296_4110651_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.6e-76	34.4
WP_011847708.1\|4110780_4112139_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_011847709.1\|4112982_4113693_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-26	37.6
WP_011847710.1\|4113682_4116322_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_011847711.1\|4116321_4117506_+	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_011847712.1\|4117809_4118079_+	chaperone NapD	NA	NA	NA	NA
WP_011847713.1\|4118075_4120571_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_011847714.1\|4120567_4120999_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_006086010.1\|4121265_4121418_-	hypothetical protein	NA	NA	NA	NA
WP_011847715.1\|4121511_4122399_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011847716.1\|4122596_4124690_-	elongation factor G	E4ZFJ7	Streptococcus_phage	6.8e-57	27.4
WP_011839978.1\|4125662_4126409_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|4126398_4127901_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_006082993.1\|4135704_4140258_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_006082994.1\|4140379_4141291_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011847719.1\|4141454_4142342_-	class D beta-lactamase	NA	NA	NA	NA
WP_011847720.1\|4142675_4143830_+	hypothetical protein	NA	NA	NA	NA
WP_011847721.1\|4144090_4144747_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_190272052.1\|4144959_4145697_+	endonuclease	NA	NA	NA	NA
WP_006082999.1\|4145705_4146437_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_011847723.1\|4146528_4147482_+	glutathione synthase	NA	NA	NA	NA
WP_011846606.1\|4147656_4148580_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.1e-148	81.8
WP_011847724.1\|4148665_4149943_+	alkaline phosphatase	NA	NA	NA	NA
WP_011847725.1\|4150114_4151158_+	methyltransferase	NA	NA	NA	NA
WP_011847726.1\|4151640_4153329_+	DUF342 domain-containing protein	NA	NA	NA	NA
WP_006083004.1\|4153558_4153936_+	DUF4144 domain-containing protein	NA	NA	NA	NA
WP_011847727.1\|4154160_4155303_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_011847728.1\|4155445_4156897_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_011847729.1\|4156904_4158953_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.3e-41	42.5
WP_014620842.1\|4158955_4160188_-	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	5.3e-09	60.0
WP_011847731.1\|4160626_4161406_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_006083010.1\|4161877_4162669_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006083011.1\|4162670_4163408_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_011847733.1\|4163401_4164487_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.5e-20	31.0
WP_041409189.1\|4164742_4166026_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011847735.1\|4166022_4166268_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011847736.1\|4166435_4166969_+	hypothetical protein	NA	NA	NA	NA
WP_011845885.1\|4168775_4170278_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
4168397:4168411	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4177890 : 4242597

Vibrio_phage(28.0%)

integrase,tail,transposase,protease,tRNA,terminase,portal

attL 4233577:4233590|attR 4237506:4237519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011845808.1\|4177890_4178832_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_014620845.1\|4178828_4179308_-	hypothetical protein	NA	NA	NA	NA
WP_011847743.1\|4179736_4180933_+	hypothetical protein	NA	NA	NA	NA
WP_011847744.1\|4181128_4182448_+	hypothetical protein	NA	NA	NA	NA
WP_011847745.1\|4182584_4183520_+\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	7.5e-08	25.6
WP_011847746.1\|4183516_4185550_+	AAA family ATPase	A0A1C9EGA6	Acidianus_two-tailed_virus	4.3e-08	34.3
WP_011847747.1\|4185592_4186099_+	hypothetical protein	NA	NA	NA	NA
WP_011847748.1\|4186167_4186611_+	DNA repair protein RadC	NA	NA	NA	NA
WP_011847749.1\|4186630_4187035_+	DUF2787 family protein	NA	NA	NA	NA
WP_011847750.1\|4187166_4187499_+	YegP family protein	NA	NA	NA	NA
WP_011847751.1\|4187861_4189451_-	bacteriohemerythrin	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-36	31.2
WP_006083014.1\|4189765_4189897_+	DUF3149 domain-containing protein	NA	NA	NA	NA
WP_006083015.1\|4190039_4190651_-	superinfection exclusion B family protein	NA	NA	NA	NA
WP_011847752.1\|4190819_4192451_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_011847753.1\|4192538_4193348_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	6.7e-13	30.4
WP_011847754.1\|4193774_4194839_+	porin	NA	NA	NA	NA
WP_011847755.1\|4195273_4196338_+	porin	NA	NA	NA	NA
WP_006083020.1\|4196512_4198789_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.2e-77	34.0
WP_006086041.1\|4198781_4199954_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_006083022.1\|4200008_4201895_-	DNA topoisomerase IV subunit B	A0A172JHT4	Bacillus_phage	3.2e-82	33.4
WP_011847756.1\|4201951_4202527_-	esterase	NA	NA	NA	NA
WP_006083024.1\|4202553_4203393_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_006083025.1\|4203408_4203849_-	DUF1249 domain-containing protein	NA	NA	NA	NA
WP_006086045.1\|4203855_4204458_-	ADP-ribose diphosphatase	NA	NA	NA	NA
WP_006086047.1\|4204702_4206010_+	outer membrane channel protein TolC	NA	NA	NA	NA
WP_006083028.1\|4206100_4206838_-	TIGR04219 family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_006083030.1\|4207822_4208305_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_006083031.1\|4208338_4209076_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_011847757.1\|4209214_4209415_-	PspC domain-containing protein	NA	NA	NA	NA
WP_011847758.1\|4209559_4209850_-	hypothetical protein	NA	NA	NA	NA
WP_011847759.1\|4210059_4211079_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_011847760.1\|4211200_4212268_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	8.6e-117	57.2
WP_014620847.1\|4212374_4212605_+	hypothetical protein	NA	NA	NA	NA
WP_011847761.1\|4212601_4212814_-	hypothetical protein	A0A088C533	Shewanella_sp._phage	3.2e-15	64.3
WP_011847762.1\|4212839_4214600_-	hypothetical protein	A0A088C4B7	Shewanella_sp._phage	1.7e-141	59.2
WP_014620848.1\|4214596_4214884_-	hypothetical protein	NA	NA	NA	NA
WP_011847763.1\|4214876_4215830_-	hypothetical protein	A0A2I7QXS4	Vibrio_phage	6.4e-31	33.3
WP_011847764.1\|4215842_4218341_-	hypothetical protein	A0A2I7QSN3	Vibrio_phage	6.2e-283	60.6
WP_011847765.1\|4218348_4218720_-	hypothetical protein	A0A2I7QS24	Vibrio_phage	8.6e-24	50.5
WP_011847766.1\|4218758_4223039_-\|tail	phage tail tape measure protein	A0A2I7QRW8	Vibrio_phage	3.2e-223	45.6
WP_011847767.1\|4223131_4223851_-	hypothetical protein	NA	NA	NA	NA
WP_011847768.1\|4223847_4224273_-	hypothetical protein	NA	NA	NA	NA
WP_011847769.1\|4224306_4224864_-	hypothetical protein	NA	NA	NA	NA
WP_011847770.1\|4224867_4225212_-	hypothetical protein	NA	NA	NA	NA
WP_011847771.1\|4225204_4225528_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	2.3e-09	42.1
WP_014620849.1\|4225608_4227615_-\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	3.2e-221	62.7
WP_011847773.1\|4227586_4229161_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	2.0e-125	48.2
WP_012088281.1\|4229210_4229417_-	hypothetical protein	NA	NA	NA	NA
WP_011847775.1\|4229446_4231444_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	1.5e-191	49.8
WP_012088279.1\|4231418_4231952_-\|terminase	terminase small subunit	O64316	Escherichia_phage	3.1e-35	49.1
WP_012586805.1\|4231905_4232241_-	hypothetical protein	NA	NA	NA	NA
WP_011847778.1\|4232351_4232855_-	hypothetical protein	NA	NA	NA	NA
WP_011847779.1\|4232835_4233369_-	lysozyme	A0A2H4P869	Pseudomonas_phage	1.1e-16	38.1
4233577:4233590	attL	NA	NA	NA	NA
WP_011847781.1\|4234813_4235428_-	oligoribonuclease	M4M9I5	Vibrio_phage	5.7e-65	63.6
WP_012196674.1\|4235436_4235790_-	hypothetical protein	NA	NA	NA	NA
WP_011847783.1\|4235776_4235995_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011847784.1\|4236050_4237307_-\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	2.1e-45	33.6
WP_011847785.1\|4237296_4237983_-	replication protein P	I6PBN0	Cronobacter_phage	1.6e-10	28.5
4237506:4237519	attR	NA	NA	NA	NA
WP_011847786.1\|4237979_4238729_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	1.5e-30	44.5
WP_011847787.1\|4238896_4239502_-	hypothetical protein	NA	NA	NA	NA
WP_011847788.1\|4239660_4240284_-	hypothetical protein	NA	NA	NA	NA
WP_011847789.1\|4240315_4240519_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_011847790.1\|4240598_4241300_+	helix-turn-helix transcriptional regulator	R9TNM0	Vibrio_phage	4.4e-61	48.9
WP_011847791.1\|4241706_4242597_+	site-specific DNA-methyltransferase	A0A1U9WRT4	Mycobacterium_phage	2.4e-72	49.3

DBSCAN-SWA_14

4276473 : 4340899

Bacillus_virus(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011847817.1\|4276473_4277826_+\|protease	DegQ family serine endoprotease	A0A1B1IRD3	uncultured_Mediterranean_phage	4.4e-09	27.6
WP_006083056.1\|4277941_4279024_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_006083057.1\|4279146_4280406_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_006083058.1\|4280415_4280673_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_006086066.1\|4280692_4280977_-	STAS domain-containing protein	NA	NA	NA	NA
WP_011847818.1\|4280973_4281636_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006083061.1\|4281647_4282121_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_011847819.1\|4282177_4282963_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_014620870.1\|4282959_4283778_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	3.4e-20	31.3
WP_157600313.1\|4283984_4284143_-	hypothetical protein	NA	NA	NA	NA
WP_006086070.1\|4284422_4285400_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.7e-40	35.9
WP_011847821.1\|4285399_4285951_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	5.4e-38	55.2
WP_006083066.1\|4285947_4286508_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_006086072.1\|4286494_4287049_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_006086073.1\|4287045_4287777_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-22	27.8
WP_011847822.1\|4287884_4289363_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_006083070.1\|4289391_4289679_+	ribosome hibernation promoting factor	NA	NA	NA	NA
WP_006083071.1\|4289681_4290125_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_011847823.1\|4290121_4290976_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-08	33.1
WP_006083073.1\|4290962_4291238_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_011847824.1\|4291557_4292922_+	magnesium transporter	NA	NA	NA	NA
WP_011847825.1\|4293072_4293909_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162096847.1\|4294170_4294860_-	OmpA family protein	NA	NA	NA	NA
WP_006083078.1\|4295532_4295766_+\|transposase	transposase	NA	NA	NA	NA
WP_006083079.1\|4296532_4297393_-	RIO-like kinase	NA	NA	NA	NA
WP_011847826.1\|4297728_4298046_-	hypothetical protein	NA	NA	NA	NA
WP_011847827.1\|4298225_4298774_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_011847828.1\|4298850_4299612_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_011847829.1\|4299836_4301789_+	EAL domain-containing protein	NA	NA	NA	NA
WP_086011359.1\|4301816_4303371_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_006083084.1\|4303638_4304034_-	hypothetical protein	NA	NA	NA	NA
WP_011845808.1\|4304086_4305028_-\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011847830.1\|4305218_4305611_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011845808.1\|4306208_4307150_+\|transposase	IS30-like element ISSba16 family transposase	NA	NA	NA	NA
WP_011847831.1\|4307256_4308087_-	hypothetical protein	NA	NA	NA	NA
WP_011847832.1\|4308185_4308893_-	LysE family transporter	NA	NA	NA	NA
WP_011847833.1\|4309120_4309963_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011847834.1\|4310268_4310997_-	hypothetical protein	NA	NA	NA	NA
WP_011847835.1\|4311199_4312837_-	alkaline phosphatase	NA	NA	NA	NA
WP_011847836.1\|4312877_4314374_-	alkaline phosphatase	NA	NA	NA	NA
WP_011847837.1\|4315818_4317813_+	diguanylate cyclase	G3MA91	Bacillus_virus	2.2e-25	38.5
WP_011847838.1\|4317816_4318779_-	hypothetical protein	NA	NA	NA	NA
WP_011847839.1\|4318780_4319167_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_011847840.1\|4319577_4320189_+	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_011847841.1\|4320246_4320786_-	hypothetical protein	NA	NA	NA	NA
WP_011847842.1\|4320782_4321079_-	DUF134 domain-containing protein	NA	NA	NA	NA
WP_011847843.1\|4321537_4323505_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_011847844.1\|4323924_4325421_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_006083102.1\|4325755_4326007_+	DUF2999 domain-containing protein	NA	NA	NA	NA
WP_011847845.1\|4326165_4326552_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011847846.1\|4326917_4328300_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_011847847.1\|4328373_4328667_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_011847848.1\|4328680_4329085_-	hypothetical protein	NA	NA	NA	NA
WP_011847849.1\|4330303_4332949_+	AAA family ATPase	NA	NA	NA	NA
WP_011847850.1\|4333543_4335181_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.4e-179	66.4
WP_006086113.1\|4335238_4335529_-	co-chaperone GroES	A0A221S322	uncultured_virus	2.0e-12	38.9
WP_011847851.1\|4335753_4337121_+	MATE family efflux transporter	NA	NA	NA	NA
WP_014620871.1\|4337122_4338112_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011847853.1\|4338240_4339344_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011839977.1\|4339396_4340899_+\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

5026825 : 5060748

Shigella_phage(25.0%)

transposase,integrase

attL 5048210:5048226|attR 5060843:5060859

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086010626.1\|5026825_5028003_-\|transposase	IS3-like element ISSba5 family transposase	Q716C2	Shigella_phage	2.0e-119	65.5
WP_011848244.1\|5028674_5029706_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011848245.1\|5029798_5031262_-	MFS transporter	NA	NA	NA	NA
WP_014620907.1\|5031321_5031786_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	7.8e-14	40.2
WP_006084819.1\|5031922_5032660_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011848247.1\|5032794_5034039_-	MFS transporter	NA	NA	NA	NA
WP_011848248.1\|5034146_5034878_-	response regulator transcription factor	NA	NA	NA	NA
WP_011848249.1\|5034871_5036545_-	sensor histidine kinase	NA	NA	NA	NA
WP_011848250.1\|5037070_5037994_+	pirin family protein	NA	NA	NA	NA
WP_011848251.1\|5038264_5039311_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_011848252.1\|5039311_5040001_+	response regulator transcription factor	NA	NA	NA	NA
WP_011848253.1\|5040051_5040750_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_011848254.1\|5040751_5042116_+	Ktr system potassium transporter B	NA	NA	NA	NA
WP_011848255.1\|5042957_5044814_+	ATP-binding protein	NA	NA	NA	NA
WP_086015431.1\|5045347_5046902_+\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
5048210:5048226	attL	NA	NA	NA	NA
WP_011848259.1\|5048759_5049089_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011848260.1\|5049082_5049301_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.2e-13	55.6
WP_011848261.1\|5049836_5050208_-	hypothetical protein	NA	NA	NA	NA
WP_086011359.1\|5050418_5051974_-\|transposase	IS3-like element ISSba13 family transposase	NA	NA	NA	NA
WP_011848262.1\|5052506_5053940_-	TniQ family protein	NA	NA	NA	NA
WP_011848263.1\|5053950_5055387_-	ATP-binding protein	NA	NA	NA	NA
WP_150100093.1\|5055386_5055941_-	hypothetical protein	NA	NA	NA	NA
WP_011839978.1\|5056010_5056757_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-43	40.9
WP_011839977.1\|5056746_5058249_-\|transposase	IS21-like element ISSba11 family transposase	NA	NA	NA	NA
WP_011848265.1\|5058320_5059931_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011848266.1\|5059920_5060748_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
5060843:5060859	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009036

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009052

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection