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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009036 Shewanella baltica OS155 plasmid pSbal02, complete sequence 0 crisprs RT 0 0 1 0
NC_009052 Shewanella baltica OS155, complete sequence 2 crisprs csa3,DEDDh,PD-DExK,cas3,WYL,DinG,RT,TnsE_C 0 1 15 0
NC_009035 Shewanella baltica OS155 plasmid pSbal01, complete sequence 0 crisprs NA 0 0 0 0
NC_009037 Shewanella baltica OS155 plasmid pSbal03, complete sequence 0 crisprs NA 0 0 0 0
NC_009038 Shewanella baltica OS155 plasmid pSbal04, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_009036
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3497 : 59455 59 Enterobacteria_phage(18.75%) integrase,transposase attL 27380:27439|attR 57766:59353
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_009052
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009052_1 1619072-1619178 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009052_2 5060793-5060868 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009052_2 2.1|5060817|28|NC_009052|CRISPRCasFinder 5060817-5060844 28 NC_014841 Pantoea sp. At-9b plasmid pPAT9B04, complete sequence 246254-246281 6 0.786

1. spacer 2.1|5060817|28|NC_009052|CRISPRCasFinder matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 6, identity: 0.786

taaacttatgtacaaactttactgttta	CRISPR spacer
gaaacatttgtacaaactttactgtgcc	Protospacer
 **** * ***************** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1214581 : 1287932 55 Acinetobacter_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_2 1392750 : 1512619 111 Pseudoalteromonas_phage(45.95%) tail,plate,transposase,capsid,head,holin,tRNA,terminase,portal NA
DBSCAN-SWA_3 1838852 : 1918454 57 Ralstonia_phage(12.5%) transposase,protease,integrase,tRNA attL 1829003:1829062|attR 1913100:1914178
DBSCAN-SWA_4 2172429 : 2250402 60 Bodo_saltans_virus(10.0%) transposase,integrase,tRNA attL 2173884:2173898|attR 2247819:2247833
DBSCAN-SWA_5 2326386 : 2374144 35 Acinetobacter_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_6 2425878 : 2488044 47 uncultured_Caudovirales_phage(27.27%) transposase,protease NA
DBSCAN-SWA_7 2503900 : 2512004 10 uncultured_Caudovirales_phage(33.33%) tRNA NA
DBSCAN-SWA_8 2777364 : 2786016 11 Yellowstone_lake_phycodnavirus(16.67%) NA NA
DBSCAN-SWA_9 3030465 : 3108333 59 Bacillus_thuringiensis_phage(12.5%) transposase NA
DBSCAN-SWA_10 3646995 : 3658421 8 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_11 3696297 : 3703893 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_12 4091390 : 4170278 51 Planktothrix_phage(27.27%) transposase,protease,integrase,tRNA attL 4099508:4099522|attR 4168397:4168411
DBSCAN-SWA_13 4177890 : 4242597 64 Vibrio_phage(28.0%) integrase,tail,transposase,protease,tRNA,terminase,portal attL 4233577:4233590|attR 4237506:4237519
DBSCAN-SWA_14 4276473 : 4340899 60 Bacillus_virus(22.22%) transposase,protease NA
DBSCAN-SWA_15 5026825 : 5060748 26 Shigella_phage(25.0%) transposase,integrase attL 5048210:5048226|attR 5060843:5060859
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage