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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009012 Hungateiclostridium thermocellum ATCC 27405, complete sequence 5 crisprs DinG,DEDDh,csa3,cas3,WYL,csm2gr11,csm3gr7,csx10gr5,cas10,cas6,csx1,cas2,cas1,cas4,cas5,cas7,cas8b1,csx19 0 32 13 0

Results visualization

1. NC_009012
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009012_1 716798-720026 Orphan NA
48 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009012_2 1712609-1719089 Orphan NA
96 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009012_3 2729744-2741081 TypeI-B NA
168 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009012_4 3785203-3791136 TypeI-B ?
80 spacers
cas8b1,cas7,cas5,cas3,cas6,csm3gr7,csx10gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009012_5 3813209-3816348 Unclear ?
42 spacers
csx1,csm3gr7,csx19,csx10gr5,cas6,cas1,cas2,cas4

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 MN871480 UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome 29655-29690 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 MT133560 Pseudomonas phage fnug, complete genome 254740-254775 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 DI373487 KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof 53100-53135 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 MN871489 UNVERIFIED: Pseudomonas phage PaZh_1, complete genome 61553-61588 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 NC_042081 Pseudomonas phage SL2, complete genome 31437-31472 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 KU521356 Pseudomonas phage KTN4, complete genome 255290-255325 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 MW057919 Pseudomonas phage vB_PaeM_kmuB, complete genome 254129-254164 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 NC_042060 Pseudomonas phage PA7, partial genome 53100-53135 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 AP019418 Pseudomonas phage PA02 DNA, nearly complete genome 248790-248825 6 0.833
NC_009012_3 3.44|2732680|36|NC_009012|CRISPRCasFinder 2732680-2732715 36 NC_004629 Pseudomonas phage phiKZ, complete genome 255110-255145 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 MN871480 UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome 29655-29690 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 MT133560 Pseudomonas phage fnug, complete genome 254740-254775 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 DI373487 KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof 53100-53135 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 MN871489 UNVERIFIED: Pseudomonas phage PaZh_1, complete genome 61553-61588 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 NC_042081 Pseudomonas phage SL2, complete genome 31437-31472 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 KU521356 Pseudomonas phage KTN4, complete genome 255290-255325 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 MW057919 Pseudomonas phage vB_PaeM_kmuB, complete genome 254129-254164 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 NC_042060 Pseudomonas phage PA7, partial genome 53100-53135 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 AP019418 Pseudomonas phage PA02 DNA, nearly complete genome 248790-248825 6 0.833
NC_009012_3 3.337|2732681|36|NC_009012|PILER-CR 2732681-2732716 36 NC_004629 Pseudomonas phage phiKZ, complete genome 255110-255145 6 0.833
NC_009012_4 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR 3790103-3790137 35 NZ_CP017832 Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence 4799-4833 6 0.829
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 MT133560 Pseudomonas phage fnug, complete genome 254740-254776 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 KU521356 Pseudomonas phage KTN4, complete genome 255290-255326 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 MW057919 Pseudomonas phage vB_PaeM_kmuB, complete genome 254129-254165 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 NC_004629 Pseudomonas phage phiKZ, complete genome 255110-255146 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 MN871480 UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome 29654-29690 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 DI373487 KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof 53099-53135 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 MN871489 UNVERIFIED: Pseudomonas phage PaZh_1, complete genome 61552-61588 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 NC_042081 Pseudomonas phage SL2, complete genome 31436-31472 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 NC_042060 Pseudomonas phage PA7, partial genome 53099-53135 7 0.811
NC_009012_3 3.212|2732680|37|NC_009012|CRT 2732680-2732716 37 AP019418 Pseudomonas phage PA02 DNA, nearly complete genome 248789-248825 7 0.811
NC_009012_4 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR 3790103-3790137 35 NZ_LR135490 Enterococcus faecium isolate E8414 plasmid 3 25697-25731 7 0.8
NC_009012_4 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR 3790103-3790137 35 NZ_CP044266 Enterococcus faecium strain V1836 plasmid pHVH-V1836-2, complete sequence 107600-107634 7 0.8
NC_009012_1 1.31|718826|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT 718826-718861 36 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 70589-70624 8 0.778
NC_009012_3 3.95|2736112|36|NC_009012|CRISPRCasFinder 2736112-2736147 36 MN693289 Marine virus AFVG_25M43, complete genome 21565-21600 8 0.778
NC_009012_3 3.311|2739337|39|NC_009012|CRT 2739337-2739375 39 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 202897-202935 8 0.795
NC_009012_3 3.388|2736113|36|NC_009012|PILER-CR 2736113-2736148 36 MN693289 Marine virus AFVG_25M43, complete genome 21565-21600 8 0.778
NC_009012_1 1.9|717358|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT 717358-717394 37 AP014424 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S46-C243, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces 188-224 9 0.757
NC_009012_2 2.52|1716069|35|NC_009012|PILER-CR,CRISPRCasFinder,CRT 1716069-1716103 35 MG945712 UNVERIFIED: Microviridae sp. isolate 1921-1801, complete genome 973-1007 9 0.743
NC_009012_2 2.74|1717551|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT 1717551-1717586 36 KX397372 Erwinia phage vB_EamM_Phobos, complete genome 135396-135431 9 0.75
NC_009012_3 3.3|2729908|37|NC_009012|CRISPRCasFinder 2729908-2729944 37 NZ_CP015592 Bacillus cereus strain AR156 plasmid pAR460, complete sequence 102383-102419 9 0.757
NC_009012_3 3.62|2733892|38|NC_009012|CRISPRCasFinder 2733892-2733929 38 NZ_CP018748 Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed3 9243-9280 9 0.763
NC_009012_3 3.62|2733892|38|NC_009012|CRISPRCasFinder 2733892-2733929 38 NZ_CP028868 Borreliella garinii strain 20047 plasmid cp32-6, complete sequence 9294-9331 9 0.763
NC_009012_3 3.75|2734764|36|NC_009012|CRISPRCasFinder 2734764-2734799 36 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 593629-593664 9 0.75
NC_009012_3 3.75|2734764|36|NC_009012|CRISPRCasFinder 2734764-2734799 36 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 132690-132725 9 0.75
NC_009012_3 3.75|2734764|36|NC_009012|CRISPRCasFinder 2734764-2734799 36 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 662573-662608 9 0.75
NC_009012_3 3.75|2734764|36|NC_009012|CRISPRCasFinder 2734764-2734799 36 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 662589-662624 9 0.75
NC_009012_3 3.148|2739672|37|NC_009012|CRISPRCasFinder 2739672-2739708 37 NC_010523 Tetragenococcus halophilus plasmid pHDC DNA, complete sequence 11093-11129 9 0.757
NC_009012_3 3.243|2734764|37|NC_009012|CRT 2734764-2734800 37 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 593629-593665 9 0.757
NC_009012_3 3.243|2734764|37|NC_009012|CRT 2734764-2734800 37 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 132689-132725 9 0.757
NC_009012_3 3.243|2734764|37|NC_009012|CRT 2734764-2734800 37 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 662572-662608 9 0.757
NC_009012_3 3.243|2734764|37|NC_009012|CRT 2734764-2734800 37 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 662588-662624 9 0.757
NC_009012_3 3.263|2736112|37|NC_009012|CRT 2736112-2736148 37 MN693289 Marine virus AFVG_25M43, complete genome 21564-21600 9 0.757
NC_009012_3 3.355|2733893|38|NC_009012|PILER-CR 2733893-2733930 38 NZ_CP018748 Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed3 9243-9280 9 0.763
NC_009012_3 3.355|2733893|38|NC_009012|PILER-CR 2733893-2733930 38 NZ_CP028868 Borreliella garinii strain 20047 plasmid cp32-6, complete sequence 9294-9331 9 0.763
NC_009012_3 3.368|2734765|36|NC_009012|PILER-CR 2734765-2734800 36 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 593629-593664 9 0.75
NC_009012_3 3.368|2734765|36|NC_009012|PILER-CR 2734765-2734800 36 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 132690-132725 9 0.75
NC_009012_3 3.368|2734765|36|NC_009012|PILER-CR 2734765-2734800 36 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 662573-662608 9 0.75
NC_009012_3 3.368|2734765|36|NC_009012|PILER-CR 2734765-2734800 36 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 662589-662624 9 0.75
NC_009012_3 3.441|2739673|37|NC_009012|PILER-CR 2739673-2739709 37 NC_010523 Tetragenococcus halophilus plasmid pHDC DNA, complete sequence 11093-11129 9 0.757
NC_009012_4 4.45|3788480|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR 3788480-3788514 35 KP282675 Acidianus rod-shaped virus 2 strain ARV2, complete genome 4154-4188 9 0.743
NC_009012_5 5.21|3814717|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT 3814717-3814752 36 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 188027-188062 9 0.75
NC_009012_1 1.31|718826|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT 718826-718861 36 NZ_CP026602 Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence 30162-30197 10 0.722
NC_009012_3 3.41|2732477|37|NC_009012|CRISPRCasFinder 2732477-2732513 37 NZ_CP038659 Citrobacter freundii strain 680 plasmid p680_1, complete sequence 619-655 10 0.73
NC_009012_3 3.41|2732477|37|NC_009012|CRISPRCasFinder 2732477-2732513 37 MN699848 Citrobacter pasteurii strain 175G8 plasmid pCfr-OXA-198, complete sequence 49357-49393 10 0.73
NC_009012_3 3.66|2734160|37|NC_009012|CRISPRCasFinder 2734160-2734196 37 NZ_LR217736 Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi 1630-1666 10 0.73
NC_009012_3 3.143|2739337|38|NC_009012|CRISPRCasFinder 2739337-2739374 38 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 202898-202935 10 0.737
NC_009012_3 3.171|2729908|38|NC_009012|CRT 2729908-2729945 38 NZ_CP015592 Bacillus cereus strain AR156 plasmid pAR460, complete sequence 102383-102420 10 0.737
NC_009012_3 3.359|2734161|37|NC_009012|PILER-CR 2734161-2734197 37 NZ_LR217736 Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi 1630-1666 10 0.73
NC_009012_3 3.436|2739338|38|NC_009012|PILER-CR 2739338-2739375 38 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 202898-202935 10 0.737
NC_009012_4 4.49|3788774|36|NC_009012|CRISPRCasFinder,CRT,PILER-CR 3788774-3788809 36 MN657047 Psychrobacter sp. strain ANT_H19 plasmid pA19H1, complete sequence 4232-4267 10 0.722
NC_009012_5 5.17|3814426|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT 3814426-3814462 37 NC_015221 Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence 28542-28578 10 0.73
NC_009012_5 5.17|3814426|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT 3814426-3814462 37 NC_015223 Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence 53347-53383 11 0.703
NC_009012_5 5.37|3815908|35|NC_009012|PILER-CR,CRISPRCasFinder,CRT 3815908-3815942 35 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 1150650-1150684 11 0.686
NC_009012_2 2.19|1713847|39|NC_009012|PILER-CR,CRISPRCasFinder,CRT 1713847-1713885 39 KR296695 UNVERIFIED: Salmonella phage 41, complete genome 88649-88687 12 0.692

1. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

2. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

3. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

4. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

5. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

6. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

7. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to MW057919 (Pseudomonas phage vB_PaeM_kmuB, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

8. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

9. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to AP019418 (Pseudomonas phage PA02 DNA, nearly complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

10. spacer 3.44|2732680|36|NC_009012|CRISPRCasFinder matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

11. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

12. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

13. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

14. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

15. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

16. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

17. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to MW057919 (Pseudomonas phage vB_PaeM_kmuB, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

18. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

19. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to AP019418 (Pseudomonas phage PA02 DNA, nearly complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

20. spacer 3.337|2732681|36|NC_009012|PILER-CR matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 6, identity: 0.833

taactgatggaatctattacaaaagaaaa--aagttca	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggtt--	Protospacer
 ***************** ******** *  *.***  

21. spacer 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 6, identity: 0.829

tagcacacaacagcaaaaaaacaaagaaaaaaaga	CRISPR spacer
gaaaaaacaacagcataaacacaaagaaaaaaaga	Protospacer
 *. * ********* *** ***************

22. spacer 3.212|2732680|37|NC_009012|CRT matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

23. spacer 3.212|2732680|37|NC_009012|CRT matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

24. spacer 3.212|2732680|37|NC_009012|CRT matches to MW057919 (Pseudomonas phage vB_PaeM_kmuB, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

25. spacer 3.212|2732680|37|NC_009012|CRT matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

26. spacer 3.212|2732680|37|NC_009012|CRT matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

27. spacer 3.212|2732680|37|NC_009012|CRT matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

28. spacer 3.212|2732680|37|NC_009012|CRT matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

29. spacer 3.212|2732680|37|NC_009012|CRT matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

30. spacer 3.212|2732680|37|NC_009012|CRT matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

31. spacer 3.212|2732680|37|NC_009012|CRT matches to AP019418 (Pseudomonas phage PA02 DNA, nearly complete genome) position: , mismatch: 7, identity: 0.811

taactgatggaatctattacaaaagaaaa--aagttcag	CRISPR spacer
gaactgatggaatctatttcaaaagaatatcaggttt--	Protospacer
 ***************** ******** *  *.***.  

32. spacer 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135490 (Enterococcus faecium isolate E8414 plasmid 3) position: , mismatch: 7, identity: 0.8

tagc-acacaacagcaaaaaaacaaagaaaaaaaga	CRISPR spacer
-agcaattgaaaagcaaaaagacaaagaaaaaaagg	Protospacer
 *** *.  ** ********.**************.

33. spacer 4.67|3790103|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044266 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-2, complete sequence) position: , mismatch: 7, identity: 0.8

tagc-acacaacagcaaaaaaacaaagaaaaaaaga	CRISPR spacer
-agcaattgaaaagcaaaaagacaaagaaaaaaagg	Protospacer
 *** *.  ** ********.**************.

34. spacer 1.31|718826|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 8, identity: 0.778

cagaaaacttgtgaactaccgccacttatagaagtg	CRISPR spacer
cttatatattgtgaactaccaccacttatagaagat	Protospacer
*  * *  ************.*************  

35. spacer 3.95|2736112|36|NC_009012|CRISPRCasFinder matches to MN693289 (Marine virus AFVG_25M43, complete genome) position: , mismatch: 8, identity: 0.778

tgaaagcgaagcccttcctaaaggctataaaactaa	CRISPR spacer
taaacttgaagagcttcctaaaggctataaaacaat	Protospacer
*.**  .****  ******************** * 

36. spacer 3.311|2739337|39|NC_009012|CRT matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 8, identity: 0.795

gaagcagcaagaagggctggttatagc----gagaaaacagca	CRISPR spacer
gaagcagcaaaaagggctggatatagcgctagaggcaac----	Protospacer
**********.********* ******    ***. ***    

37. spacer 3.388|2736113|36|NC_009012|PILER-CR matches to MN693289 (Marine virus AFVG_25M43, complete genome) position: , mismatch: 8, identity: 0.778

tgaaagcgaagcccttcctaaaggctataaaactaa	CRISPR spacer
taaacttgaagagcttcctaaaggctataaaacaat	Protospacer
*.**  .****  ******************** * 

38. spacer 1.9|717358|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to AP014424 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S46-C243, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 9, identity: 0.757

gctctaa--cagtaattcaattatttttgtattcatttg	CRISPR spacer
--tgtgatcccataatttaattttttttgtattcatttt	Protospacer
  * *.*  * .*****.**** *************** 

39. spacer 2.52|1716069|35|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to MG945712 (UNVERIFIED: Microviridae sp. isolate 1921-1801, complete genome) position: , mismatch: 9, identity: 0.743

tctcgctcgaataaaattggtacatcatatttttc	CRISPR spacer
cgtaaattgaataaagtttgtacatcatattttta	Protospacer
. * . *.*******.** *************** 

40. spacer 2.74|1717551|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to KX397372 (Erwinia phage vB_EamM_Phobos, complete genome) position: , mismatch: 9, identity: 0.75

tcaccgttaggaaagttgatagtgaacacgctgtta	CRISPR spacer
gtaccgtcagaaaagttgatagtgaacaccgcggca	Protospacer
 .*****.**.******************  .* .*

41. spacer 3.3|2729908|37|NC_009012|CRISPRCasFinder matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 9, identity: 0.757

atgagtatcaattaagattattacttgaattaaagtg	CRISPR spacer
tttcttataaattaagattgttacttgaattataaag	Protospacer
 *   *** **********.************ *. *

42. spacer 3.62|2733892|38|NC_009012|CRISPRCasFinder matches to NZ_CP018748 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed3) position: , mismatch: 9, identity: 0.763

gctgcagaaatatatcaaatcacaaaaga---gccaatcga	CRISPR spacer
catgcagaaatatttcaaatcataaaagatgtggcaac---	Protospacer
  *********** ********.******   * ***.   

43. spacer 3.62|2733892|38|NC_009012|CRISPRCasFinder matches to NZ_CP028868 (Borreliella garinii strain 20047 plasmid cp32-6, complete sequence) position: , mismatch: 9, identity: 0.763

gctgcagaaatatatcaaatcacaaaaga---gccaatcga	CRISPR spacer
catgcagaaatatttcaaatcataaaagatgtggcaac---	Protospacer
  *********** ********.******   * ***.   

44. spacer 3.75|2734764|36|NC_009012|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

45. spacer 3.75|2734764|36|NC_009012|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

46. spacer 3.75|2734764|36|NC_009012|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

47. spacer 3.75|2734764|36|NC_009012|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

48. spacer 3.148|2739672|37|NC_009012|CRISPRCasFinder matches to NC_010523 (Tetragenococcus halophilus plasmid pHDC DNA, complete sequence) position: , mismatch: 9, identity: 0.757

ggtttggtgatattttagccagtattgaaagtttggg	CRISPR spacer
agaaagttgatattttaactagtattgaaagttcagg	Protospacer
.*   * **********.*.*************..**

49. spacer 3.243|2734764|37|NC_009012|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.757

gagttctgatattggatttggaacacttgatatagta	CRISPR spacer
tgattacgatattggttttggaacaattgatatggaa	Protospacer
 ..** .******** ********* *******.* *

50. spacer 3.243|2734764|37|NC_009012|CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.757

gagttctgatattggatttggaacacttgatatagta	CRISPR spacer
tgattacgatattggttttggaacaattgatatggaa	Protospacer
 ..** .******** ********* *******.* *

51. spacer 3.243|2734764|37|NC_009012|CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.757

gagttctgatattggatttggaacacttgatatagta	CRISPR spacer
tgattacgatattggttttggaacaattgatatggaa	Protospacer
 ..** .******** ********* *******.* *

52. spacer 3.243|2734764|37|NC_009012|CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.757

gagttctgatattggatttggaacacttgatatagta	CRISPR spacer
tgattacgatattggttttggaacaattgatatggaa	Protospacer
 ..** .******** ********* *******.* *

53. spacer 3.263|2736112|37|NC_009012|CRT matches to MN693289 (Marine virus AFVG_25M43, complete genome) position: , mismatch: 9, identity: 0.757

tgaaagcgaagcccttcctaaaggctataaaactaaa	CRISPR spacer
taaacttgaagagcttcctaaaggctataaaacaatg	Protospacer
*.**  .****  ******************** * .

54. spacer 3.355|2733893|38|NC_009012|PILER-CR matches to NZ_CP018748 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed3) position: , mismatch: 9, identity: 0.763

gctgcagaaatatatcaaatcacaaaaga---gccaatcga	CRISPR spacer
catgcagaaatatttcaaatcataaaagatgtggcaac---	Protospacer
  *********** ********.******   * ***.   

55. spacer 3.355|2733893|38|NC_009012|PILER-CR matches to NZ_CP028868 (Borreliella garinii strain 20047 plasmid cp32-6, complete sequence) position: , mismatch: 9, identity: 0.763

gctgcagaaatatatcaaatcacaaaaga---gccaatcga	CRISPR spacer
catgcagaaatatttcaaatcataaaagatgtggcaac---	Protospacer
  *********** ********.******   * ***.   

56. spacer 3.368|2734765|36|NC_009012|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

57. spacer 3.368|2734765|36|NC_009012|PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

58. spacer 3.368|2734765|36|NC_009012|PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

59. spacer 3.368|2734765|36|NC_009012|PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.75

gagttctgatattggatttggaacacttgatatagt	CRISPR spacer
tgattacgatattggttttggaacaattgatatgga	Protospacer
 ..** .******** ********* *******.* 

60. spacer 3.441|2739673|37|NC_009012|PILER-CR matches to NC_010523 (Tetragenococcus halophilus plasmid pHDC DNA, complete sequence) position: , mismatch: 9, identity: 0.757

ggtttggtgatattttagccagtattgaaagtttggg	CRISPR spacer
agaaagttgatattttaactagtattgaaagttcagg	Protospacer
.*   * **********.*.*************..**

61. spacer 4.45|3788480|35|NC_009012|CRISPRCasFinder,CRT,PILER-CR matches to KP282675 (Acidianus rod-shaped virus 2 strain ARV2, complete genome) position: , mismatch: 9, identity: 0.743

ataattcttctcgtttttgttttaattcgtttatt	CRISPR spacer
ctaatttttctcatttttgttttaatattactact	Protospacer
 *****.*****.************* .  .**.*

62. spacer 5.21|3814717|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.75

cagtattgcattgttattcctcgctttctttttgtt	CRISPR spacer
cctagtcccattgttattcctcgctttctacttgta	Protospacer
*   .*. ********************* .**** 

63. spacer 1.31|718826|36|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026602 (Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

cagaaaacttgtgaactaccgccacttatagaagtg	CRISPR spacer
acattaggttgtgaactaccaccacttatagaagat	Protospacer
  .  *. ************.*************  

64. spacer 3.41|2732477|37|NC_009012|CRISPRCasFinder matches to NZ_CP038659 (Citrobacter freundii strain 680 plasmid p680_1, complete sequence) position: , mismatch: 10, identity: 0.73

tatactggtccagtgaatggtccagtgaatttgaaac	CRISPR spacer
cttctttttccagtgcatggtctagtgaatttgataa	Protospacer
. * .*  ******* ******.*********** * 

65. spacer 3.41|2732477|37|NC_009012|CRISPRCasFinder matches to MN699848 (Citrobacter pasteurii strain 175G8 plasmid pCfr-OXA-198, complete sequence) position: , mismatch: 10, identity: 0.73

tatactggtccagtgaatggtccagtgaatttgaaac	CRISPR spacer
cttctttttccagtgcatggtctagtgaatttgataa	Protospacer
. * .*  ******* ******.*********** * 

66. spacer 3.66|2734160|37|NC_009012|CRISPRCasFinder matches to NZ_LR217736 (Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi) position: , mismatch: 10, identity: 0.73

attactcttaaatatatattaacatatttttattaca	CRISPR spacer
acttattttaagtatatattaatatatttttatatgt	Protospacer
*.*  *.****.**********.**********    

67. spacer 3.143|2739337|38|NC_009012|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 10, identity: 0.737

gaagcagcaagaagggctggttatagcgagaaaacagc	CRISPR spacer
gaagcagcaaaaagggctggatatagcgctagaggcaa	Protospacer
**********.********* *******  *.*.  . 

68. spacer 3.171|2729908|38|NC_009012|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 10, identity: 0.737

atgagtatcaattaagattattacttgaattaaagtgg	CRISPR spacer
tttcttataaattaagattgttacttgaattataaaga	Protospacer
 *   *** **********.************ *. *.

69. spacer 3.359|2734161|37|NC_009012|PILER-CR matches to NZ_LR217736 (Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi) position: , mismatch: 10, identity: 0.73

attactcttaaatatatattaacatatttttattaca	CRISPR spacer
acttattttaagtatatattaatatatttttatatgt	Protospacer
*.*  *.****.**********.**********    

70. spacer 3.436|2739338|38|NC_009012|PILER-CR matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 10, identity: 0.737

gaagcagcaagaagggctggttatagcgagaaaacagc	CRISPR spacer
gaagcagcaaaaagggctggatatagcgctagaggcaa	Protospacer
**********.********* *******  *.*.  . 

71. spacer 4.49|3788774|36|NC_009012|CRISPRCasFinder,CRT,PILER-CR matches to MN657047 (Psychrobacter sp. strain ANT_H19 plasmid pA19H1, complete sequence) position: , mismatch: 10, identity: 0.722

ttaattcatcgccatttttgcctataagtccataaa	CRISPR spacer
atagttcatcgccattttttcctataattgggtgtt	Protospacer
 **.*************** ******* *  .*.  

72. spacer 5.17|3814426|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NC_015221 (Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence) position: , mismatch: 10, identity: 0.73

aatattggaatccaaaataaccttcaattttccacca	CRISPR spacer
aatattgcaatccaaattaaccttcagtgaagctctg	Protospacer
******* ******** *********.*    * *..

73. spacer 5.17|3814426|37|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NC_015223 (Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence) position: , mismatch: 11, identity: 0.703

aatattggaatccaaaataaccttcaattttccacca	CRISPR spacer
aatattgcaatccaaattaaccttcagtgaagctttg	Protospacer
******* ******** *********.*    * ...

74. spacer 5.37|3815908|35|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 11, identity: 0.686

ttttgtcaagccattgatacatcctttaatgtcta	CRISPR spacer
tcgccataagcctttgatacattctttaatgtgac	Protospacer
*. .  .***** *********.*********   

75. spacer 2.19|1713847|39|NC_009012|PILER-CR,CRISPRCasFinder,CRT matches to KR296695 (UNVERIFIED: Salmonella phage 41, complete genome) position: , mismatch: 12, identity: 0.692

ttctatggtcggagtgactggatttgaaccagcgacctc	CRISPR spacer
gaatttggtcggggtgactggattcgaaccagcatatag	Protospacer
   * *******.***********.********.  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 302271 : 380377 58 Bacillus_phage(23.08%) protease,coat,transposase NA
DBSCAN-SWA_2 720605 : 793682 57 Enterobacteria_phage(16.67%) coat,transposase NA
DBSCAN-SWA_3 1289869 : 1342918 48 Bacillus_phage(22.22%) protease,transposase,integrase,coat attL 1340314:1340331|attR 1347689:1347706
DBSCAN-SWA_4 1507661 : 1517084 8 Prochlorococcus_phage(28.57%) NA NA
DBSCAN-SWA_5 1938475 : 2016575 80 Erysipelothrix_phage(56.0%) portal,tail,head,holin,transposase,protease,capsid,terminase,integrase attL 2000661:2000720|attR 2016575:2018022
DBSCAN-SWA_6 2025971 : 2062706 39 Streptococcus_phage(18.52%) portal,tail,head,holin,transposase,protease,capsid,terminase NA
DBSCAN-SWA_7 2224042 : 2239013 14 uncultured_virus(33.33%) integrase,transposase attL 2216974:2216988|attR 2241928:2241942
DBSCAN-SWA_8 2356640 : 2460095 75 Enterobacteria_phage(26.67%) tRNA,holin,transposase NA
DBSCAN-SWA_9 2533914 : 2606886 57 unidentified_phage(25.0%) protease,transposase NA
DBSCAN-SWA_10 2931282 : 2966457 53 Clostridium_phage(21.21%) portal,tail,plate,transposase,capsid,terminase,integrase attL 2931143:2931196|attR 2968318:2968371
DBSCAN-SWA_11 3204695 : 3273547 55 unidentified_phage(10.0%) protease,tRNA,transposase NA
DBSCAN-SWA_12 3324050 : 3389049 51 Bacillus_phage(28.57%) tRNA,capsid,transposase NA
DBSCAN-SWA_13 3759641 : 3828682 48 unidentified_phage(42.86%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage