CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009074	Burkholderia pseudomallei 668 chromosome I, complete sequence	1 crisprs	DinG,csa3,DEDDh,cas3,WYL	0	0	8	0
NC_009075	Burkholderia pseudomallei 668 chromosome II, complete sequence	3 crisprs	cas3,DinG,csa3	2	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009074_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009074_1

291246-291347

Orphan

Consensus_repeat	Method
ATCGAAGCGGCTGATCGAAGTGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009074_1

>merge|NC_009074|1|291246-291347|CRISPRCasFinder
ATCGAGGCGGCTCATCGATGCGATCAATCGAAGCGATCAATCGAAGCGGCTGATCGAAGTGGCTGATCGAAGTGGCTGATCGAAGCGGCTGATCGAAGCGGC

>NC_009074|1|1|291246-291347|CRISPRCasFinder
ATCGAGGCGGCTCATCGATGCGAT	CAATCGAAGCGATCA
ATCGAAGCGGCTGATCGAAGTGGC	TGATCGAAGTGGCTG
ATCGAAGCGGCTGATCGAAGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009074.1\|WP_004523016.1\|295169_296018_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NC_009074.1\|WP_011850959.1\|298426_299998_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|236625
NC_009074.1\|WP_004542866.1\|299994_303207_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|226220
NC_009074.1\|WP_004550954.1\|296017_296515_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226285
NC_009074.1\|WP_004189043.1\|285372_286734_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NC_009074.1\|WP_004537779.1\|284952_285177_+\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_011850956.1\|293930_294173_+\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_011204784.1\|290589_290838_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NC_009074.1\|WP_009936044.1\|296548_297016_+\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_011850957.1\|294492_295173_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NC_009074.1\|WP_011850958.1\|297114_298416_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_009074.1\|WP_004523020.1\|289542_290268_+\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_004189990.1\|287326_288667_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NC_009074.1\|WP_011850953.1\|288792_289455_+\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_011850952.1\|287047_287257_-\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_011850950.1\|281599_281923_-\|hypothetical-protein	unknown	unknown	unknown
NC_009074.1\|WP_004200269.1\|279541_281071_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NC_009074.1\|WP_011850951.1\|282706_284383_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|334596
NC_009074.1\|WP_004188983.1\|303203_303545_+\|copper-binding-protein	unknown	unknown	gnl\|CDD\|378683
NC_009074.1\|WP_079997137.1\|291395_293819_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783

Protein	Function_ID	Function_description	E-value
NC_009074.1\|WP_004523016.1\|295169_296018_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.58112e-64
NC_009074.1\|WP_011850959.1\|298426_299998_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|236625	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional.	2.98322e-83
NC_009074.1\|WP_004542866.1\|299994_303207_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NC_009074.1\|WP_004550954.1\|296017_296515_+\|membrane-protein	gnl\|CDD\|226285	COG3762, COG3762, Predicted membrane protein [Function unknown].	3.88895e-21
NC_009074.1\|WP_011204784.1\|290589_290838_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	1.02004e-09
NC_009074.1\|WP_011850957.1\|294492_295173_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.06282e-78
NC_009074.1\|WP_011850958.1\|297114_298416_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.60798e-16
NC_009074.1\|WP_004189990.1\|287326_288667_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NC_009074.1\|WP_079997137.1\|291395_293819_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_009074.1\|WP_004189043.1\|285372_286734_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NC_009074.1\|WP_004200269.1\|279541_281071_-\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.25307e-116
NC_009074.1\|WP_004188983.1\|303203_303545_+\|copper-binding-protein	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	2.10207e-17
NC_009074.1\|WP_011850951.1\|282706_284383_+\|divalent-metal-cation-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	2.25202e-84

>NC_009074.1|WP_011204784.1|290589_290838_+|heavy-metal-associated-domain-containing-protein
MGRSILQSIHIDWRGNMKLEVKDMSCGGCANAITQAIQTADSSARVSVDVASKVVDVGSALGIERVVAIIEAAGFHPAVLAA
>NC_009074.1|WP_004523020.1|289542_290268_+|hypothetical-protein
MNRAIRMRAAVAAAAFSASLPAGAAGPAIDPGRYLYVEGGSAHGVLTVKGNAFEIETIGGNCHTCALSGTFDGRVGIARDGENVCRIAVSGGHGDLRLDTSGSDACRDFCGMRASFDGEYRRPGAACTDRARDVRTERSHRQYAAHDYDAARTTLKALLAECGGFMGWIELDRAKSDLALTEYHRGDRAQCVAVLSDTIAYRAQQDHSDAFGLPPCDADNYKSTGDAILHNLALCQAPAKR
>NC_009074.1|WP_011850953.1|288792_289455_+|hypothetical-protein
MQISRKIAGAPRLAARAAAAGASAPAVRINRRTAPRSSVRGTDNKTRTETEVDMFQMLPSMTFGRRLSVWWSCMWRQTLASAPVWILGVAIVGLSISRTHSAAGRPPSGGAAALAVATFFVCLVVCLPIAGYMVRGGFAAHALTAPERLAFRQALMVGLTTFGWAVLAALPISVATMPLRHAGYPLAGQAIGWVLNVAAGLYIVLPRQARRLRLLAGEAA
>NC_009074.1|WP_004189990.1|287326_288667_+|argininosuccinate-synthase
MTTILENLPAGQKVGIAFSGGLDTSAALHWMRIKGAVPYAYTANLGQPDEDDYDAIPKRAIQYGAEGARLIDCRAQLVAEGIAALQCGAFHISTAGVTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLVNPDLKIYKPWLDQQFIDELGGRAEMSEFMRQAGFEYKMSAEKAYSTDSNLLGATHEAKDLESLESGIKIVNPIMGVAFWRDDVKIDKEEVTIRFEEGRPVALNGVEYKDAVALLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALLYIAYERLVTGIHNEDTIEQYRENGRRLGRLLYQGRWFDPQAIMLRETAQRWVARAVTGEVTVELRRGNDYSIIGTRSPNLTYQPERLSMEKVQSMFSPRDRIGQLTMRNLDITDTRDKLRIYSQVGLLAAGESSALPKLKEDESGN
>NC_009074.1|WP_011850952.1|287047_287257_-|hypothetical-protein
MRQVSRAAPAGPKWGREGGGRGCGVDGGGVWGGRGGWGGRQSRARQARRTSRGDWIKESGARIVGPLGH
>NC_009074.1|WP_004189043.1|285372_286734_+|glutathione-disulfide-reductase
MEFDYDLFVIGAGSGGVRLSRVAASYGARVGIAEEERIGGTCVLRGCIPKKLLVYASHYSHDVEDAAGYGWTFDIGLFSWPTLIEAKDREIARLSGIYVDLLNKSGVEIHTGRATLVGAHTVDVAGRRVTARHIAVATGSRPVLPPIPGIEHAITSREALELPELPQRIAIVGGGYIAVEFAGIFNGLGVDVDLFYRGEQILRGFDDDVRHALHGEMTKQGVAIHTRATIEAIERGADGGLTLRLAEGAYGPYDAVLYATGRVANGDGLGLEAVGVARDANGAIEVDAYSATTVPSIHAIGDVTARPQLTPVATRDGMLLAANLFGGKRIAADHRYVPSAVFSQPEIATVGLTEAQARAELGALDIYKTSFRALRHTLSGRDEKTFMKLVVARDSQRVVGAHMVGRDAAEIIQGIAIAIRAGATKAQFDETVGIHPTAAEEFVTLRQKEPDDA
>NC_009074.1|WP_004537779.1|284952_285177_+|hypothetical-protein
MGILNTVGEIAGAVAAVEAAEKVDPDAGLLTKAAAAVAGFKGAEALENLVEKKKDDEAADGENTAAPDSDASQA
>NC_009074.1|WP_011850951.1|282706_284383_+|divalent-metal-cation-transporter
MSTPTDISPPIALERDAVLDQAHVGDIKGAFGTIAHHDTAPRSGWWARMRTLLAILGPGLIVMVGDNDAGAFGTYTQAGQNYGTSLLWTLLLLVPVLFVNQEMVLRLGAVTGVGHARLIFERFGKFWGAFSVIDLFILNALTIVTEFIGITFVLDFFGVSKVAGVCIAAALTMAAVSTGDFRRFERFAVALCVLSLLLVPVLVSIHPPVHQMARDLFVPTWPAHAKRSDVMLLVIGIVGTTVAPWQLFFQQSYVIDKRITPRFIKYEKADLWIGIVLVMIGAIAMISFSAALYAGRPEAGGFTDAGGVIAGLAKYAGPTSATLFAIALLDACIIGAAAVSLATAYAIGDVFRIRHSLHRGVSDAKGFYLVYFGIVAAAAALVLMPGSPLGLLTEAVQTLAGVLLPSATVFLLLLCNDRAVLGPWVNSARLNLFTGAVVWVLVMLSIILTASVMYPDMSGEAMLEVLAGGTLFAALGLAATFVLRRRAGGADRANVAHDARDAHVDRAARDTWRMPPLDALPAPRVTLSTRIWMGVLRGYLVLAVGLVIVKVVQMAFFR
>NC_009074.1|WP_011850950.1|281599_281923_-|hypothetical-protein
MTDAKHRENNFRPAHAESFGAMQAARKLTGELARKPNRKESPYFMGFSGLIGRARSCASAQRLCHFYLPIFMRPAYNPPQFIKESHVDTSPGSSRPMPVGIGAAFAN
>NC_009074.1|WP_004200269.1|279541_281071_-|carbohydrate-porin
MQRFVMKKKTLHQMLVKSGVASGLPLLLSLGIVQPALAQASSPAAAPAENAAPPAPATRAPDGVPGGNGATAAQTDAAPTGFWDRSNLFGDMGGLRTKLGDHGITLNLQETSEYLRNLSGGTSRGGAYDGLTQFGFSVDTEKAIGLPGGTFNVSGLQIHGTSLTARNLQLLQTASGIEAEATTRLWELWYQQSFANGRADVKVGQQSLDQEFMVSQYASTFINATFGWPVLPAVDMPAGGPAYPLSSLGVRLRAKPSDAWTVMAGVFDGNPAGGVGDAQQLNRHGTNFNLRNGALFIGELQYALNAPPADPKAPQAGLPGMYKLGVWYNSERFADPRYDTNGVPLADPASNGVAATHRGNYGFYAVADQMVWRPGADSPRSLNVFARVMGAPGDRNAVDFTLNAGVTLKAPFAGRDNDTAGLAVSYAKIGSRARGADGDTGVFQTPGYPVRRAETLIEATYQYQVTPWWQLQGDFQYAFRPGGGIPNPNEPGSRIGNEAIVGVRTTITF
>NC_009074.1|WP_079997137.1|291395_293819_-|heavy-metal-translocating-P-type-ATPase
MHDAHVHHDRSGDTNERRDPHRPHETKTPGETAVDPVCGMKVPIDTPRRYDYQGRTYRFCSDKCATAFRASPQRFVGTPKQRAGASAAKPGTVYTCPMHPQIRANAPGACPICGMALEPLTPDAAEDGNPELRSMTRRFQLGLVLVVPLVLMTMGAMVLPFDIGAGIDALLARWPRPFGMPASWSQWVQAALATPVVLWGGWPFLVRGWKSFVTRRLNMFSLIGLGVCVAYLFSVFALLFPDTLPQAFRSGHEIPLYFEASAVIVTLVLLGQVLELRARSRTSSAIRDLLQLAPHTAVRVNPDGSEQTVPLDAVVVGDTLRVKPGSKVPVDGIVVAGHSSVDESMITGEPVPAEKTEGSPVTGATVNQTGTFVMRAQKIGTDTLLARIVQMVAEAGRSRAPIQKLADQVSGGFVLAVIVLAALAFAAWAAFGPAPALANALVVAISVLIIACPCALGLATPVSIIVGVGRGAREGVLIKDAEALELMEKVDTVVVDKTGTLTEGRPRVQTIVALGGQSERALLGDAASLEGASEHPLAQAIVEHAARMGAERKPVASFDSVPGKGVKGTLDARTVALGNAHLMADLAIDCTAADADSNRLREAGQTVMYVAIDGRLAGYIGVADPIKETTPDAVQLLKASGTRIVMLTGDNPVTANAVARTLSLDGVKAGVLPEDKYRHVQALQQQGHVVAMAGDGVNDAPALAQANVGIAMGTGTDVAMNSARIVLVKGDLRGIARARALSVATMKNIRQNLFFAFVYNAVGIPVAAGVLYPWFGITLSPIFASAAMAASSVSVIGNALRLRGAKT
>NC_009074.1|WP_011850956.1|293930_294173_+|hypothetical-protein
MLRACGRLRAPPARDARARSATPSPGALPARPASPPALARGEQYRVPARAEAPATAIANRAEAFVSGPEQAARMRMAVSL
>NC_009074.1|WP_011850957.1|294492_295173_+|LemA-family-protein
MRFHSSAPRPAATWIRLIRAALLAAFALTLSGCGYNAIQVQDEQVKASWSEVLNQYQRRADLVPNLVNTVKGYANQERDVLTRVTEARAQVGSIRATPELLSDPQAFAKFDAAQGQLTSSLSRLLVVSENYPQLKSDANFRDLQAQLEGTENRITVARNRYIRSVQAYNTTIRSFPSNLTAMAFGYKEKPNFSVENEAQIAKPPRVDFGTSSAPAPAPAPAAGASN
>NC_009074.1|WP_004523016.1|295169_296018_+|YgcG-family-protein
MKGFLRAACFAILTFLSIGGVCRAEQPVPPLAARVTDETGTLTAAERATLEQSLKDFETRKGSQIAVLIVPTTQPETIEQYSIRVVEQWKLGRANVDDGALLIIAKNDRALRIEVGYGLEGVLTDATSRRIIDELIVPSFRRGDFYGGVSAGVGGMMRVIEGEPLPPPRARGGEEGGLGRVLPLLFVMTIVAGGVSRAIFGRLAGSVVTGGVVGFVAWLWSGALLVAIAAAAIALFFTLLGGGMGARVGGPFIGGRGGRGGGNDGFRGGGGGFGGGGASGRW
>NC_009074.1|WP_004550954.1|296017_296515_+|membrane-protein
MDIARIARHLSMTRWRVAAAFPKRTLGKIERAIEASHEKHVGQLRFAVEGALHASMLLRGITARERAIDVFSELRVWDTEHNNGVLIYLLLADHDVEIVADRGIHARVDGDEWERVCRAMEAQFRRGRFEAGSIHGIEAVTALLARHYPSRRAPGGAWPSTPVVL
>NC_009074.1|WP_009936044.1|296548_297016_+|hypothetical-protein
MRAATCNPIANNIARRTANHGYFAALYSCAMKIVRLLLVLLWCATLPLTGLAASGLAGDCPMQQAMSMSEDGAMPSMQDCESMRSSVAGKSGKSGEAANVFCKVMVQCQFGSLYHPMPAADVARPASPGRPLVFHYAKSLTVREPGGLWRPPRTA
>NC_009074.1|WP_011850958.1|297114_298416_+|TolC-family-protein
MYSMLRAPHGRRARLHARTLVAALTFANAAAAFAQSAPLTLDAALQSAADRSAAMQAAQASVQASAELAVKAGQLPDPMLKAGIDNLPVDGPQRLTIGQESMTMRRIGIAQEWVSGDKRRLRTALANEVVGRERAGYLAQLADVRRQTAIAWLDAAYAKKALALQRELADEMNRELAATQAAYRGAKATAADALQARALLAQARDRQANARQAFDTALIGLSRWIAAPALDVAGEPPAPVSFVPSLPPDELRRVQPTLIAADEDVEVADADVALAASERRPNWTWEIAYQQRGAPYANMVSIGVTIPLPLDRRDRQDRDVAQKRALATKARLMYEDARRQVDADIRTQSATLESGRARLAELGRALLPAADERVRLADAAYRAGAGSLADAFAARRARLDARLQVLDLERDVARAWAQLDYQIVPSAMLAAAQ
>NC_009074.1|WP_011850959.1|298426_299998_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNHIRLTRAALAVLAAVALSAAGYFAGARFGAHVDVAHRAHATNTTNAVDGADAKPGRKVLYWRDPMVPNQHFDKPGPSPFMNMPLEPVYADDGGGAPGVRIDPGLQQNLGIRYAKVRRRDVDEGFDAVGTTQFDESRTAVVQSRVTGYVDRLYASAPLQRIAKGAPIASLFVPDWLAPQEEYLALKRGAMDEALLAASRARMRALSIPDSVIANLDRTGRAQTHIVLASPETGVVSELNVRDGAMVTPGQTLAKIAGLSTLWAVIDVPEALASGVRPGMRVDATFEGDPQRRVSGAIREILPGVNATTRTLQARLELDNRALALTPGMLMRARVGASHAASRLVVPSDAVIATGKRSVVIVRTADDRLRPADVTVGRDAGDETEVLAGLEEGETVVASGQFLIDSEASLKSVLPRLEADASGALAARAARPPARSSPPAAQAGGAAPVYETTGKVEKITAADITFSHQPVPALGWGAMTMSFDKPAPAAFANVKAGDTVRFAFEANGDGYRLTKVEPVGGAR
>NC_009074.1|WP_004542866.1|299994_303207_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MIAHVIRWSIRNRLLVLLATALVAAWGVVSLNRTPLDALPDLSDTQVIVKASYPGKAPRVVEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDRTDQYWARSRVLEYLNQVQGRLPQGASVALGPDATGVGWVYEYALVDRSGRRDLGELRALNDWFLKFELKAVPDVAEVASVGGMVRQYQVVLDPDRLRAFGITQAAVADALGKANSESGGSVVEMAESEYMVRASGYLRSLDDFRNVVLRTSESGTPVLLGDVARVQIGPEMRRGIAELNGEGEVAGGVIVMRSGKNALSTIEAVKAKLAELRRSLPAGVELVTTYDRSQLIGRAVDNLKDKLIEEFVVVGLVCALFLFHLRSAFVAILSLPLGVLAAFIVMRHQGVNANLMSLGGIAIAIGAMIDAAVVMIENAHKHLESHEHAHPGAPLSSAARWELIAASAAEVGPALFFSLLIVTLSFVPVFALEGQEGKLFAPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPREASNPLNRLLVRLYRPLLEATLARPWRAIAIAAAALVLTAIPMSRLGGEFMPPLDEGDLLYMPTALPGISAQKAAELLQQTDRLIKTVPEVATVFGKSGRADTATDPAPLEMFETTIRFRPRGEWRPGMTPGRLVDELDRVVKVPGLSNVWVPPIRNRLDMLSTGIKTPVGVKIAGPELAQIDRIAAQVEAAVKRVPGVTSALAERLNGGRYVDVDIDRRAAARYGLSVGDVQAVVASAIGGENVGEVIAGRERFPINIRYPREVRDSLEKLRALPIVTERGAQILLRDVAAVTIADGPPMIRSENARLSGYVYVDIRGVDLKTAVGAMQRAVAQQVALPPGYSIAWSGQFEYLERAAATLRTVIPVTLAVIFVLLFLTFDSAADALLLMTTVPFALVGGLWFVWALGHAVSVATAVGFIALAGVAAEFGVVMLLYLKRAYERRIAAGEPPNEATLADAIREGAVLRVRPKAMTVAVVLAGLVPIMIGHGSGSEVMQRIAAPMVGGMVTAPLLSMFVIPAAWLLLQRRRMRGAVRAASQAPVAGAAGADFSSIHTGESR
>NC_009074.1|WP_004188983.1|303203_303545_+|copper-binding-protein
MKQWIAALMTLAAAAAPAFAAEAAAGPNTPAPPRDARPPAGDALTEAVVRQVDLATGMITLKHGALDNVGMPPMTMTFKAKDIAMAKRVRAGDSVRVRVENVDGVMTVVKLEK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

927976 : 938932

Streptococcus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|927976_930091_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_011851199.1\|930391_930901_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.2e-13	42.2
WP_071810810.1\|931092_931311_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|931573_932152_-	pseudouridine synthase	NA	NA	NA	NA
WP_011851200.1\|932418_933678_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_011851201.1\|933650_933833_-	hypothetical protein	NA	NA	NA	NA
WP_011851202.1\|933845_935456_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|935585_935789_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|936320_936635_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|936631_938932_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_2

1487371 : 1493358

Burkholderia_virus(33.33%)

transposase,integrase

attL 1476803:1476857|attR 1488486:1488540

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1476803:1476857	attL	NA	NA	NA	NA
WP_011851421.1\|1487371_1488391_-\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	1.3e-50	38.6
WP_079996922.1\|1488642_1490106_+\|transposase	IS1182-like element ISBma2 family transposase	A0A1X9I5T2	Streptococcus_phage	4.0e-80	38.6
1488486:1488540	attR	NA	NA	NA	NA
WP_144411083.1\|1490536_1490743_+	hypothetical protein	Q8W6S4	Burkholderia_virus	6.9e-15	82.2
WP_004534505.1\|1490763_1491477_-	hypothetical protein	A4PE26	Ralstonia_virus	1.5e-32	43.8
WP_011204999.1\|1491485_1491992_-	hypothetical protein	NA	NA	NA	NA
WP_011851424.1\|1491963_1492437_-	hypothetical protein	NA	NA	NA	NA
WP_011851425.1\|1492429_1492936_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	8.7e-19	38.7
WP_011851426.1\|1492932_1493358_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	48.3

DBSCAN-SWA_3

1540417 : 1579597

uncultured_Caudovirales_phage(50.0%)

coat,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004542513.1\|1540417_1542268_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011851456.1\|1542295_1543711_-	hypothetical protein	NA	NA	NA	NA
WP_004193592.1\|1543734_1544001_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_004521773.1\|1544260_1544488_-	hypothetical protein	NA	NA	NA	NA
WP_011851457.1\|1544521_1547329_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-27	25.0
WP_011851458.1\|1547331_1548165_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_028358364.1\|1548301_1548859_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_041278305.1\|1548855_1549449_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_038769098.1\|1549445_1551854_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_011851462.1\|1551962_1555298_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_041278308.1\|1555275_1555767_+	lipoprotein	NA	NA	NA	NA
WP_004550605.1\|1555771_1555993_+	hypothetical protein	NA	NA	NA	NA
WP_079996927.1\|1556830_1557094_+	paar motif family protein	NA	NA	NA	NA
WP_004521762.1\|1557111_1557417_+	hypothetical protein	NA	NA	NA	NA
WP_011851466.1\|1557429_1560270_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.2e-19	25.7
WP_009973657.1\|1560271_1561147_+	hypothetical protein	NA	NA	NA	NA
WP_079996928.1\|1561167_1563987_+	hypothetical protein	NA	NA	NA	NA
WP_079997167.1\|1564632_1565025_+	hypothetical protein	NA	NA	NA	NA
WP_004526762.1\|1565155_1565407_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_111963064.1\|1565364_1566273_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004526764.1\|1566316_1566562_+	hypothetical protein	NA	NA	NA	NA
WP_004556892.1\|1566902_1567196_+	hypothetical protein	NA	NA	NA	NA
WP_004552606.1\|1567280_1567460_-	hypothetical protein	NA	NA	NA	NA
WP_011851471.1\|1567788_1568100_+	hypothetical protein	NA	NA	NA	NA
WP_004193855.1\|1568362_1568644_-	H-NS histone family protein	NA	NA	NA	NA
WP_079996930.1\|1568643_1568904_-	hypothetical protein	NA	NA	NA	NA
WP_011851472.1\|1569111_1570086_-	amidohydrolase family protein	NA	NA	NA	NA
WP_079996932.1\|1570130_1571417_-	MFS transporter	NA	NA	NA	NA
WP_009920897.1\|1571482_1571620_-	hypothetical protein	NA	NA	NA	NA
WP_011851475.1\|1571833_1572727_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004531175.1\|1573064_1573286_+	hypothetical protein	NA	NA	NA	NA
WP_004526780.1\|1573371_1573557_+	hypothetical protein	NA	NA	NA	NA
WP_011851476.1\|1573543_1574089_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011851477.1\|1574141_1574702_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526783.1\|1574778_1575303_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004526784.1\|1575320_1576160_+	molecular chaperone	NA	NA	NA	NA
WP_079997170.1\|1576267_1578616_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011851479.1\|1578631_1579597_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

2317073 : 2321555

Ralstonia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011851785.1\|2317073_2317307_+	hypothetical protein	A4PE26	Ralstonia_virus	2.1e-12	59.1
WP_079996995.1\|2317348_2317576_-	hypothetical protein	Q8W6S4	Burkholderia_virus	2.7e-20	75.4
WP_004557051.1\|2317826_2318222_+	hypothetical protein	NA	NA	NA	NA
WP_004521807.1\|2318502_2318928_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	1.1e-14	47.0
WP_011851787.1\|2318924_2319431_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.5e-18	39.4
WP_079996998.1\|2319772_2320375_+	hypothetical protein	NA	NA	NA	NA
WP_076804729.1\|2320795_2321107_+	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_079996999.1\|2321291_2321555_-	hypothetical protein	Q8W6S4	Burkholderia_virus	1.9e-25	82.6

DBSCAN-SWA_5

2828482 : 2837332

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522363.1\|2828482_2829325_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.0e-16	26.6
WP_004188957.1\|2829659_2830583_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_085964699.1\|2830710_2832057_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004532363.1\|2832283_2833186_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.9e-53	39.9
WP_079997042.1\|2833197_2833524_-	hypothetical protein	NA	NA	NA	NA
WP_004189725.1\|2833536_2833854_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|2833925_2834918_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|2834976_2835900_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_011851991.1\|2835931_2837332_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.2e-79	38.3

DBSCAN-SWA_6

3205397 : 3214634

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3205397_3206945_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004194373.1\|3206981_3207509_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3207505_3208189_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3208253_3209069_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004538732.1\|3209244_3211251_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	8.2e-52	34.5
WP_004533593.1\|3211284_3212415_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_004194034.1\|3212681_3214634_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_7

3514762 : 3571217

Pseudomonas_phage(12.5%)

tRNA,plate,transposase,integrase

attL 3517615:3517631|attR 3574793:3574809

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041278550.1\|3514762_3516061_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|3516127_3517210_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|3517253_3518111_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
3517615:3517631	attL	NA	NA	NA	NA
WP_004186955.1\|3518190_3518499_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|3518513_3519110_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004542691.1\|3519393_3520182_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|3520716_3522318_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3522751_3522955_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_011852262.1\|3523141_3524404_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|3525063_3525669_-	nitroreductase family protein	NA	NA	NA	NA
WP_079997102.1\|3525630_3526206_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_004198061.1\|3526165_3527449_-	MFS transporter	NA	NA	NA	NA
WP_011852264.1\|3527607_3528252_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004527819.1\|3528596_3529220_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004527820.1\|3529311_3530214_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011852265.1\|3530341_3531478_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_079997240.1\|3531474_3531690_-	hypothetical protein	NA	NA	NA	NA
WP_004521968.1\|3531834_3532953_-	acyltransferase	NA	NA	NA	NA
WP_011205258.1\|3533388_3533835_-	hypothetical protein	NA	NA	NA	NA
WP_076893105.1\|3534361_3534457_-	hypothetical protein	NA	NA	NA	NA
WP_004204896.1\|3534495_3536661_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_004535992.1\|3537242_3537641_+	hypothetical protein	NA	NA	NA	NA
WP_011205259.1\|3537683_3537953_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|3538055_3538286_+	hypothetical protein	NA	NA	NA	NA
WP_009974237.1\|3538519_3538876_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|3538901_3540170_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004521963.1\|3540184_3542446_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_011852269.1\|3542442_3543891_+	TolC family protein	NA	NA	NA	NA
WP_011852270.1\|3544100_3545051_-	hypothetical protein	NA	NA	NA	NA
WP_004527832.1\|3545062_3546028_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_079997105.1\|3546045_3546324_+	hypothetical protein	NA	NA	NA	NA
WP_011852272.1\|3546299_3550193_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|3550189_3551179_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_011852273.1\|3551183_3552116_+	OmpA family protein	NA	NA	NA	NA
WP_004521957.1\|3552314_3553436_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_011852274.1\|3553525_3556195_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.8e-89	32.0
WP_004200010.1\|3556228_3557329_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_079997241.1\|3557292_3559119_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011205263.1\|3559210_3559723_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3559750_3560254_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3560326_3561817_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3561833_3562352_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3562388_3563060_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3563434_3564049_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004555444.1\|3564157_3565504_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|3565500_3566286_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004535002.1\|3566771_3567110_-	DUF4102 domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.2e-16	48.0
WP_009932052.1\|3567543_3568344_+	hypothetical protein	NA	NA	NA	NA
WP_004535005.1\|3568350_3569421_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_144411106.1\|3569703_3570823_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	39.5
WP_076802946.1\|3570956_3571217_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-16	68.1
3574793:3574809	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3796206 : 3805734

Burkholderia_phage(22.22%)

integrase

attL 3787667:3787682|attR 3811671:3811686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3787667:3787682	attL	NA	NA	NA	NA
WP_011852336.1\|3796206_3796908_-	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	4.8e-07	30.4
WP_144411108.1\|3797278_3797542_-	hypothetical protein	NA	NA	NA	NA
WP_011852337.1\|3797728_3798001_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	2.4e-47	98.9
WP_011852338.1\|3798157_3799237_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.9e-160	98.6
WP_009974475.1\|3799236_3799689_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	3.1e-31	58.8
WP_041278661.1\|3799946_3800489_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.8e-47	55.8
WP_041278567.1\|3800743_3801661_-	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	3.1e-46	40.6
WP_028201013.1\|3801660_3801978_-	transcriptional regulator	A0A088CD40	Shigella_phage	4.8e-15	57.0
WP_045591613.1\|3802357_3802630_-\|integrase	tyrosine-type recombinase/integrase	Q9T1P3	Pseudomonas_phage	1.2e-14	56.3
WP_041278569.1\|3803198_3803681_-	DUF4411 family protein	NA	NA	NA	NA
WP_011852343.1\|3803667_3804816_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_041278575.1\|3804879_3805734_-\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	1.1e-61	46.6
3811671:3811686	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009075

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009075_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009075_1

2661540-2661632

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009075_1

>merge|NC_009075|1|2661540-2661632|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NC_009075|1|1|2661540-2661632|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009075.1\|WP_004188221.1\|2663591_2664047_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NC_009075.1\|WP_011853757.1\|2651562_2653398_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_009075.1\|WP_004529178.1\|2657018_2658044_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NC_009075.1\|WP_045591704.1\|2656438_2656942_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_011853764.1\|2666001_2667795_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NC_009075.1\|WP_050020039.1\|2667778_2669209_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NC_009075.1\|WP_011853761.1\|2659091_2661104_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NC_009075.1\|WP_004187193.1\|2661850_2662099_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NC_009075.1\|WP_004524990.1\|2653765_2655331_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NC_009075.1\|WP_004524981.1\|2665612_2665870_+\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004524989.1\|2655871_2656381_+\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004187346.1\|2662095_2662797_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NC_009075.1\|WP_011853760.1\|2658246_2659095_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NC_009075.1\|WP_011853763.1\|2664036_2665641_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NC_009075.1\|WP_011853765.1\|2669205_2670384_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NC_009075.1\|WP_004524993.1\|2650288_2651413_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_009075.1\|WP_011853756.1\|2647016_2650286_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NC_009075.1\|WP_004524985.1\|2662793_2663102_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NC_009075.1\|WP_011853758.1\|2653515_2653674_+\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004530237.1\|2663094_2663595_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198

Protein	Function_ID	Function_description	E-value
NC_009075.1\|WP_004524990.1\|2653765_2655331_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NC_009075.1\|WP_004188221.1\|2663591_2664047_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NC_009075.1\|WP_011853757.1\|2651562_2653398_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	5.61834e-132
NC_009075.1\|WP_004529178.1\|2657018_2658044_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_009075.1\|WP_011853756.1\|2647016_2650286_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.05183e-92
NC_009075.1\|WP_011853764.1\|2666001_2667795_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	3.02027e-178
NC_009075.1\|WP_050020039.1\|2667778_2669209_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NC_009075.1\|WP_004524985.1\|2662793_2663102_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NC_009075.1\|WP_004187193.1\|2661850_2662099_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NC_009075.1\|WP_011853761.1\|2659091_2661104_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NC_009075.1\|WP_004187346.1\|2662095_2662797_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NC_009075.1\|WP_011853760.1\|2658246_2659095_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.84715e-33
NC_009075.1\|WP_011853763.1\|2664036_2665641_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NC_009075.1\|WP_011853765.1\|2669205_2670384_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NC_009075.1\|WP_004524993.1\|2650288_2651413_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.93708e-26
NC_009075.1\|WP_004530237.1\|2663094_2663595_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	4.39073e-17

>NC_009075.1|WP_011853761.1|2659091_2661104_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAAHRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGAEVNVNAAANVDAEAEARHKR
>NC_009075.1|WP_011853760.1|2658246_2659095_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGETAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NC_009075.1|WP_004529178.1|2657018_2658044_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NC_009075.1|WP_045591704.1|2656438_2656942_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDTHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTERIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NC_009075.1|WP_004524989.1|2655871_2656381_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NC_009075.1|WP_004524990.1|2653765_2655331_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NC_009075.1|WP_011853758.1|2653515_2653674_+|hypothetical-protein
MRARRSHGAGIRLGFDKPSGAHSSPHDGWVQTDIAMRLLQISLMPDQALANE
>NC_009075.1|WP_011853757.1|2651562_2653398_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLAAAVRTVLASPVPLVMLWGAAGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NC_009075.1|WP_004524993.1|2650288_2651413_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NC_009075.1|WP_011853756.1|2647016_2650286_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQDAQEAQGGAGERPGSSERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGPEVGPEVGSEAGPEAGLAASAESGSERGVAHGAERAREPAADITAAAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAASVPVILGATILLLKKQER
>NC_009075.1|WP_004187193.1|2661850_2662099_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NC_009075.1|WP_004187346.1|2662095_2662797_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NC_009075.1|WP_004524985.1|2662793_2663102_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NC_009075.1|WP_004530237.1|2663094_2663595_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREAREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NC_009075.1|WP_004188221.1|2663591_2664047_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NC_009075.1|WP_011853763.1|2664036_2665641_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDVSDVGDARDEGAGRVVAVRGAVVDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPPLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NC_009075.1|WP_004524981.1|2665612_2665870_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NC_009075.1|WP_011853764.1|2666001_2667795_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPVHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFALTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLDDAPGTYVFQK
>NC_009075.1|WP_050020039.1|2667778_2669209_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NC_009075.1|WP_011853765.1|2669205_2670384_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHVRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKIVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NC_009075_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009075_2

2842719-2842865

Orphan

Consensus_repeat	Method
CACGACAGCACGACAGCACGACAGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009075_2

>merge|NC_009075|2|2842719-2842865|CRISPRCasFinder
CACGAACACACGAACACGCGACCGCACGCCCACGCGCACACCCGACCACGCAATCGCGCAATCGAGCAATCGAGCAATCACACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCACGACAGCAC

>NC_009075|2|2|2842719-2842865|CRISPRCasFinder
CACGAACACACGAACACGCGACCGCAC	GCCCACGCGCACACCCGACCACGCAATCGCGCAATCGAGCAATCG
AGCAATCACACGACAGCACGACAGCAC	GACAGCACGACAGCACGACAG
CACGACAGCACGACAGCACGACAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009075.1\|WP_011853862.1\|2832113_2832416_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|225703
NC_009075.1\|WP_011853861.1\|2830796_2832041_+\|flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236046
NC_009075.1\|WP_004524799.1\|2833423_2834128_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NC_009075.1\|WP_011853874.1\|2847984_2849388_+\|indoleacetamide-hydrolase	unknown	unknown	gnl\|CDD\|236030
NC_009075.1\|WP_004552209.1\|2850643_2853007_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|131764
NC_009075.1\|WP_004266659.1\|2849573_2850125_+\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004190485.1\|2843166_2844090_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_009075.1\|WP_004533130.1\|2844154_2845297_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NC_009075.1\|WP_144411164.1\|2838648_2840058_+\|DNA-repair-protein	unknown	unknown	unknown
NC_009075.1\|WP_004190530.1\|2854548_2854839_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NC_009075.1\|WP_004524788.1\|2841166_2842501_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_009075.1\|WP_038741703.1\|2834309_2835224_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_009075.1\|WP_076857143.1\|2840761_2841136_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_011853866.1\|2835450_2836788_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NC_009075.1\|WP_011853867.1\|2836884_2837826_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_009075.1\|WP_009941165.1\|2832352_2832670_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|113128
NC_009075.1\|WP_004190287.1\|2845473_2846322_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_009075.1\|WP_004529349.1\|2846684_2846834_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_079997506.1\|2853620_2854442_+\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_038747265.1\|2846860_2847685_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332

Protein	Function_ID	Function_description	E-value
NC_009075.1\|WP_011853862.1\|2832113_2832416_+\|chorismate-lyase	gnl\|CDD\|225703	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism].	1.59611e-07
NC_009075.1\|WP_011853861.1\|2830796_2832041_+\|flavin-dependent-oxidoreductase	gnl\|CDD\|236046	PRK07538, PRK07538, hypothetical protein; Provisional.	0
NC_009075.1\|WP_004524799.1\|2833423_2834128_-\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.21794e-72
NC_009075.1\|WP_011853874.1\|2847984_2849388_+\|indoleacetamide-hydrolase	gnl\|CDD\|236030	PRK07488, PRK07488, indoleacetamide hydrolase.	0
NC_009075.1\|WP_004552209.1\|2850643_2853007_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|131764	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.	3.34414e-90
NC_009075.1\|WP_004190485.1\|2843166_2844090_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.62225e-57
NC_009075.1\|WP_004533130.1\|2844154_2845297_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.69274e-171
NC_009075.1\|WP_004524788.1\|2841166_2842501_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.12376e-146
NC_009075.1\|WP_038741703.1\|2834309_2835224_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	8.19785e-89
NC_009075.1\|WP_004190530.1\|2854548_2854839_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	5.135e-20
NC_009075.1\|WP_011853866.1\|2835450_2836788_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NC_009075.1\|WP_011853867.1\|2836884_2837826_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.4579e-74
NC_009075.1\|WP_009941165.1\|2832352_2832670_+\|chorismate-lyase	gnl\|CDD\|113128	pfam04345, Chor_lyase, Chorismate lyase. Chorismate lyase catalyzes the first step in ubiquinone synthesis, i.e. the removal of pyruvate from chorismate, to yield 4-hydroxybenzoate.	0.000875608
NC_009075.1\|WP_004190287.1\|2845473_2846322_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.00291e-102
NC_009075.1\|WP_038747265.1\|2846860_2847685_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.57648e-43

>NC_009075.1|WP_004524788.1|2841166_2842501_+|MHS-family-MFS-transporter
MPTPTPGTPRPPRTPQPVRAALAAFIGTTVEFYDYYTYATAAALVLGDVFFPSDNPFVSTMASFATFFVGFVARPLSGAVFGHLGDRIGRKKMLVLTMFLMGAATTGIGLLPGYATIGVWAPVLLVLLRILQGIAVGGEWGGAVLMASEHASAGRRTLFASFPQMGSPAGLILSLLAFRYVTSLDHARFVAWGWRLPFLASFVLLLIGVAVRLGVNESPEFERVRDSHAVARFPVAEVLRTAWYPIVLAAAATTIGSAGFFFTNTFMISYVTTYLGMSKSFILDCLFAVTLIQLLSQPVSALLAQRFGETRFLVCAALLSMLTPYPMFVLVRTHDPVAIVAGIAFAVVALSAVYAVIAGFMSAAFPTRVRYSGISIAYQLCALVAGGTTPLVGTMIAQRYRGEWLPLALFFSLLAFVSLVGIVGLGRYRRNLHAVAPRAWAVNP
>NC_009075.1|WP_076857143.1|2840761_2841136_-|hypothetical-protein
MPGLRDDRAAWAAGGEAVGRFGFASPASRRCRLACVYFRVLLRSLIRNMGDACVQPAYCLRIDGRARKAARCAAAFASAAAVIRAALPGASSSDAFACATPDGNRSALVRAEIDGVGTRAGSYR
>NC_009075.1|WP_144411164.1|2838648_2840058_+|DNA-repair-protein
MVVSPENLSLNYLSNSDILVTLEKAGVKLDIFYGLLWKHVFAVELLKRRCHLTNEEKTRSWIAGFIPALKRKDQAKERAFNYLSTWGDTFWQETEYRVKEVTEKLEGEITSKLGAEIGALKADVNGSLKRMDERKTEVVNKAQTVINSIQIKALADVIALMNEEIFTDPQQKYYLVIDRLDENWVDDDLRYRLIRALIESVKTFRSVVNVKIIVALRQDLVRTVFERTRDAGFQEEKYAALFLPLRWEKNLLIKMLNERIIRLVREQYTLSPIELVDLFPKTIGKEAFVDYLLERTHYRPRDAISFINECLKRSEGKGQVTVQTVRNAEIEYSTTRMNALSFEWTSHFPNFLEYLPLIEQMPSKFRLSQIHKDRINEFAIADCFDGEHAVDPVIRAGFAFINNDNTHAFRVELIKALYSIGVVGLKLASFNSQIWAYMDINAPGDGQIRANSEVFIHPMAWARLGVKPN
>NC_009075.1|WP_011853867.1|2836884_2837826_+|LysR-family-transcriptional-regulator
MDIKLDTPLLGALRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALHEATVAAFASLGRTLRQLSAPDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLRAEFHAIDRETMSADDIDIAIRWDPFSYGALHVEPLFDESLVAAAAPAYLDRHPPRATAKWVSSVVPLHDASAWPEAPRYVEWRMWLDAVVPGYAGALRGPEFNLASLAIAAAVAGQGVVVCREALVDDEIARGRLVNVFARRVPAPAQYKAICARPEDARVKAFVGWLRAESDSYAARRQTQARP
>NC_009075.1|WP_011853866.1|2835450_2836788_-|D-serine-ammonia-lyase
MPVGRSLSLDPNLLAQLQSHSPTLWLNPHQGMPLPDFAPTAADLADADARLRRCAGLLAELFAELRLSGGLIASPLQPAEPLKRAARAGHAQAGAWYVKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARARFARHTVMVGSTGNLGLSIGMLASALGFRTVVHMSADAKAWKKARLRTRGVEVVEHAGDYAKAVDAGRRQAAGMPCCHFVDDEGSRMLFLGYATAAAELAAQLAQAGRPVDARHPLFVHLPCGVGGAPGGIVYGLKALYGEHVHAFVAEPTASPCVLVQLAGDAAHPRSVYDIGLDNRTEADGLAVAQASPLAAALLRAQAAGAFTVDDRQLFAHLLDARERLGIDLEPSAAAAFGGPAWIAGSDAGRAYLRGRGIDPDAATHVIWATGGSLVPAQEHRRFQAHARAQRQVGGAGA
>NC_009075.1|WP_038741703.1|2834309_2835224_+|LysR-family-transcriptional-regulator
MPARKPGRLPPLNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGLAYFADVRRALNLIGDATDRLAKRRANVTISTTPSFASRWLIPRLASFGDEHPGVDLRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARARDLAGHALLHDAHDLWPEFLAALPERVATDPAKGPRFNQSSLAIDAAIAGHGVALASDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQLDARCDGA
>NC_009075.1|WP_004524799.1|2833423_2834128_-|SDR-family-oxidoreductase
MAVEKVALITAAGKGMGAAIARELASAGYRVALMSPSGSAVALAGELDGLGLRGSVTEEADLDRLVRETLARYGRIDAVVNNTGHPPKGELLSIADASWHDALDLILLNVARLMRRVTPVFQAQGGGAAVNISSFAAVAPEQPMPVSSVLRAALGAWTRLYAERYAAENIRMNAVLPGFVDSWPETPGIVARIPAGRFGRTREIAKTVAFLLSDGAGYVTGQSIRVDGGIVRAM
>NC_009075.1|WP_009941165.1|2832352_2832670_+|chorismate-lyase
MRDRAQHRVGAHALETQWKPLTGYGSLPLGHILYDDPAIVRAPFECALLMPDDPLDAISRRYARAAAPPRARRSAFVRNGATLVVSECFLPQFWSGFAQARLAGA
>NC_009075.1|WP_011853862.1|2832113_2832416_+|chorismate-lyase
MNASSGWSRQPPASLSEREIHWLFAPGSPTERLSALGEYSLEPVDQRHAAACAADASLLGVEPDSPIWVREVVMRLDAQPCVTARSIASARTRSKRSGSR
>NC_009075.1|WP_011853861.1|2830796_2832041_+|flavin-dependent-oxidoreductase
MKKIVIVGAGIAGLTLALTLHSRGLAVRVFEAAPRIEPLGVGLNIQPYAVRVLHELGLLETLARQSITTKEMVFFTRYGQRIYSLPLGKYGGHNFPQLSIHRGILQLALLKAATERLGPDFLVNGHSFVSCTQNRRSVNAVFSGAPGGADLVSVECDALIGADGVHSKVYRSLYPDGPRTKGNGVLMWRGVTIAPPFLTGASMVRMGVPSHGKLVVYPIRSDVNAQGDQLINWVAELDEAVYRAGANAAPGSGKDFIRFFASRTFDWLDVPALLERAASPIIAMPMADRDPLPRWQTGRVTLIGDAAHPMVPVGSNGAGQAMLDAHSLGTRLAETADIEAALATYEHERRAYTSNIVLGDRLDLPDRLIQEVDCRSHGEPFSDIGEIIASDEASRLALPDYHGRPLAPTQAGGA
>NC_009075.1|WP_004190485.1|2843166_2844090_+|LysR-family-transcriptional-regulator
MNPSDLRDLRLPSLDGLLAFVAAARHGTFERAAEELCVTGSAVAKRVAALEQLLGVQLLVRSGKALTLTAAGNEYLHQVHAPLHLLAAVPLHRRNAGKTERLRICAPPTFARQILVARLDAFTLAHPGVELEVMLASPFPDAPPTGADLWIRGGGPIVSGATVLMVDALTPLAAPSLVERFAPLRRPADLAALPLLCTPLEPWTPWFRVAGLDWPEPANGPKLLDLGLLLEAAVSGQGVALGSPALARPWLAAGALVPLFPRIVRPAAPYYLMPYAPRAAAGAFAAWLADVCERAVRDGAEFLSRHG
>NC_009075.1|WP_004533130.1|2844154_2845297_+|alpha-hydroxy-acid-oxidizing-protein
MSVPITCIEDLRVLAKKRIPRMFYDYVDTGSYTESTYRANEADFRKIRLRQRVGVDISNRNLRTTMAGQDVAMPVALAPTGLVGMMRADGEILAARAARHFGVPFTLSTMSICSIEDIVAHVGGPFWFQLYMMRDRAFIERLIERASAAGCPALVLTMDLQIAGQRHKDVKNGLSAPPRITLPNLLDMMRKPGWCLGMARTRRRHFGNIVGHVKGVTDMWSLDSWTREQFDPTIGWRDAEWVRRRWNGKLIVKGVLDADDALRAADAGADAIVVSNHGGRQLDGAMSSVEALPAIVEAAGKRVEVWLDGGVRTGQDVLKAVALGARGTMIGRAFLYGVAALGEQGARRALELIARELDTTMALCGCTDIRSVNADVLARR
>NC_009075.1|WP_004190287.1|2845473_2846322_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGQEKPGLLDADGRIRDLSSLIDDVAGGALSDASLARLAAADPASLPLVAGEPRIGACVGRIGKFVCIGLNYADHAAEAGLAVPAEPVVFGKWTSAVSGPHDGIEIPRGSVKTDWEVELGVVIGRACKNVDEADALSHVAGYCVVNDVSEREWQIERGGQWDKGKGFDTFGPIGPWLVTRDEIADPQALDLWLDVDGRRYQSGNTRTMVFTVARLIAYLSRCMSLQPGDVISTGTPPGVGMGVKPSPVYLKPGQTVRCGVAGLGEQQQRTRAAA
>NC_009075.1|WP_004529349.1|2846684_2846834_-|hypothetical-protein
MHRTPRPRVLRGCADCVDGWLIHRSIKQLLQRAMIINECEINDNFVYNC
>NC_009075.1|WP_038747265.1|2846860_2847685_+|IclR-family-transcriptional-regulator
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIAEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVEHTKVEGELALDMREFDALLHEIRASGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPYVRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
>NC_009075.1|WP_011853874.1|2847984_2849388_+|indoleacetamide-hydrolase
MTSHRDTYVRSASVRAIADAVNGRRVRALEQAEAALERLALVEPLAAMTHVAPEIARRAAANVDAQIASGRRLPLAGVPFVIKDNLFTADMPTRAASPALLGFDATRNATAVQQLLDAGAVPLGKANMHELAFGITSANGYFGAVRNPHDPARIAGGSSGGTACAVAAGIAFGLGTDTGGSVRIPAAFCGVAGLRPTPRRYSTEGVLALSPTRDTVGPIAHGIDDLLLLDAVLTGDAGEPAPVALAGLRVGVPDAPYFDGLDPAVAELTERAFAALTDAGARLIPLAAHALHEADEACGFPIAGFEALAYWRRFSAERLDLPFAEFVARLGSDDVRHLFRMLIDAPPSSDAYAAAIDVLQSTVRWYDQAFHRTGVDCIALPTVQCDAPLVTDSGHDLPSDAAYALFTRVIRQTGPATLGGVPSVSIPAGLSKHTGVPVGLMLEGPAGNDRRLLAIAREVERLLARAP
>NC_009075.1|WP_004266659.1|2849573_2850125_+|hypothetical-protein
MDVMAKLLTDLEFQRFSELQQKQASFTITPEEADELRDIVARAQKKRDDRASAMRAIEAYIAQFDITPDELFSPEQIGEAARTYGLIAAGKKERSLPPSLTFNGKPYQWTKTLPDEVRLPLFDAFKAGESIKRFIAMPKDAARCALTVARLERETGAVYADTLLDELAISRKHVEEAAAKLAA
>NC_009075.1|WP_004552209.1|2850643_2853007_-|GNAT-family-N-acetyltransferase
MTVRNLDALFHPTAVAVVGASPRPGSVGAMVWACVLDGRFGGAIWPVNPKYGELNGHKVYPYVDQLPSAPSVALICTPPATWPGIVRKLGGLGVRAAIIVGETRSGADRAALERALAAAKPYLLRVVGPGSLGVVSPALGAHFGAPACIVKAGGVAWVSQSNALTNAVLGWAHARGLGFSHAVALGGEADVDAADVLDYLASDAETRAILLELDTVKSARKFMSAARAAARNKPVLALRAGRGDSGDLLYTAAFQRAGMVRVDALDDLLDEIEALGVGRAAATSGGVTLVTSDRGVAKLAVDALAAAGETLAQWPRAAVDEVGGALPAGIVAGNPLLLGDDARPEYFGAALKALAQHPPTGTVFVVHATSHSAPAVDVARVLIESRKFARRGMLACFFGGVDAATRDALHVHGIPVHTTPQRLARAHARLVDYQLGRELLMQTPEGTPPQPAASISAARHTARAALAQGRDGFEGDAALEWLAGFGIERATDADVDMGDTIVDITVGMYDDPNFGPVFRYSVPPADGVSAPFVVYGLPPFNTVLARAVVARSPYAHRAPPEPLLQALTALSQAVCDVREIVEMSLVLRVRPTRVVALGPHIRLATGRSRLAIVPYPRYLEQQLDWRGERITVRPIRPEDEAAHRELLSAMTPDDLRMRFFGAIRNFDHSQIARMTQIDYDREMALIATLDDADGRAHTLGAVRAVTDPDNEATEFAIAVRPDQKGKGLGRMLMTRIIDYARSRGTAWMIGEALRENTAMISLAKDSGFAVSSTEEPGVVAFRLKLQP
>NC_009075.1|WP_079997506.1|2853620_2854442_+|hypothetical-protein
MHCPIAGNRRAGQKIAVQSSERRGPPLTRFEFNAQCHCAISVKYENNGDARRECRANLRSRPRTEAPLAIPLPPPLRQASKLREPAWQAVEERLFGENSGISFMPAPVRRDSIAARMRKLSRKCRLHGFAVHVRWLFPPTGWPIRTDKWRYHALSARRRFSGIAVEHALAARIECETARRTRRGDTRHAPPKVSVFGNQGEAIRDWVSSFGEIARLPRQNRKRRPEWMRRRETFGSIRQVRIDGRIVRHPPERIGFIAESTHNPLRREIAGPP
>NC_009075.1|WP_004190530.1|2854548_2854839_-|H-NS-histone-family-protein
MATYRQLTAQLEKLQQKIDKEREKAITDAIADIKAKIEEYDITPEELGFRSVKAAAKPKRALPPKYLNPKTGETWSGRGRAPAWLGKNRNRFLIKD

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Crispr_ID: NC_009075_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009075_3

3092209-3092351

Orphan

Consensus_repeat	Method
CGCCGCAGTCGTCGCCGCAGTCGTCGCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009075_3

>merge|NC_009075|3|3092209-3092351|CRISPRCasFinder
CGCGACAGGCGTCGGCGACGTGGCCGACGGCGCGGCGAGGACCGACGGCGATGCGTAAAGGTGAGAAGAAACGGGAGCCGCCGCAGTCGTCGCCGCAGTCGTCGCCGCAGTCGTCGCCGCAGTCGTCGCCGCAGTCGTCGCCG

>NC_009075|3|3|3092209-3092351|CRISPRCasFinder
CGCGACAGGCGTCGGCGACGTGGCCGACG	GCGCGGCGAGGACCGACGGCGATGCGTAAAGGTGAGA
AGAAACGGGAGCCGCCGCAGTCGTCGCCG	CAGTCGTCGCCGCAGTCGT
CGCCGCAGTCGTCGCCGCAGTCGTCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009075.1\|WP_004202330.1\|3106112_3106769_-\|glutamine-ABC-transporter-permease-GlnP	unknown	unknown	gnl\|CDD\|181907
NC_009075.1\|WP_079997519.1\|3096232_3097879_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|214838
NC_009075.1\|WP_073699289.1\|3074192_3076634_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182070
NC_009075.1\|WP_011204715.1\|3076647_3076917_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004529544.1\|3102961_3104308_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|236027
NC_009075.1\|WP_009927536.1\|3107760_3108048_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_004190976.1\|3104304_3105375_-\|peptidase-C45	unknown	unknown	gnl\|CDD\|367486
NC_009075.1\|WP_011854002.1\|3106833_3107586_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	unknown	unknown	gnl\|CDD\|236540
NC_009075.1\|WP_011854000.1\|3101101_3102130_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_009075.1\|WP_004523231.1\|3105387_3106110_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	unknown	unknown	gnl\|CDD\|181906
NC_009075.1\|WP_011854001.1\|3102369_3102933_-\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|367130
NC_009075.1\|WP_004536799.1\|3076950_3078054_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NC_009075.1\|WP_011853995.1\|3081547_3082975_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_009075.1\|WP_004190247.1\|3080708_3081491_-\|outer-membrane-lipoprotein-sorting-protein	unknown	unknown	gnl\|CDD\|379924
NC_009075.1\|WP_004523235.1\|3098475_3101109_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|274598
NC_009075.1\|WP_004523242.1\|3082974_3083676_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_009075.1\|WP_011853994.1\|3079413_3080712_-\|hypothetical-protein	unknown	unknown	unknown
NC_009075.1\|WP_011853996.1\|3083675_3085160_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|109787
NC_009075.1\|WP_004523246.1\|3078975_3079374_-\|DUF4345-domain-containing-protein	unknown	unknown	gnl\|CDD\|372978
NC_009075.1\|WP_011853997.1\|3085192_3089314_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848

Protein	Function_ID	Function_description	E-value
NC_009075.1\|WP_079997519.1\|3096232_3097879_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|214838	smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes.	7.28142e-56
NC_009075.1\|WP_004536799.1\|3076950_3078054_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.68842e-42
NC_009075.1\|WP_004202330.1\|3106112_3106769_-\|glutamine-ABC-transporter-permease-GlnP	gnl\|CDD\|181907	PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed.	3.59558e-124
NC_009075.1\|WP_004529544.1\|3102961_3104308_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|236027	PRK07483, PRK07483, aspartate aminotransferase family protein.	0
NC_009075.1\|WP_004190976.1\|3104304_3105375_-\|peptidase-C45	gnl\|CDD\|367486	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.	3.98912e-53
NC_009075.1\|WP_011854002.1\|3106833_3107586_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	gnl\|CDD\|236540	PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed.	1.92973e-161
NC_009075.1\|WP_011854000.1\|3101101_3102130_+\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	5.25942e-103
NC_009075.1\|WP_011854001.1\|3102369_3102933_-\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	0.00979497
NC_009075.1\|WP_073699289.1\|3074192_3076634_-\|EAL-domain-containing-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	3.24594e-119
NC_009075.1\|WP_011853995.1\|3081547_3082975_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.93515e-29
NC_009075.1\|WP_004190247.1\|3080708_3081491_-\|outer-membrane-lipoprotein-sorting-protein	gnl\|CDD\|379924	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein. This is likely to be a family of outer-membrane lipoprotein-sorting proteins.	1.28968e-41
NC_009075.1\|WP_004523235.1\|3098475_3101109_+\|MMPL-family-transporter	gnl\|CDD\|274598	TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.	0
NC_009075.1\|WP_004523231.1\|3105387_3106110_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	gnl\|CDD\|181906	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ.	1.06362e-174
NC_009075.1\|WP_004523242.1\|3082974_3083676_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.92366e-104
NC_009075.1\|WP_011853996.1\|3083675_3085160_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|109787	pfam00743, FMO-like, Flavin-binding monooxygenase-like. This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.	2.2241e-73
NC_009075.1\|WP_004523246.1\|3078975_3079374_-\|DUF4345-domain-containing-protein	gnl\|CDD\|372978	pfam14248, DUF4345, Domain of unknown function (DUF4345). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 125 and 141 amino acids in length. There is a single completely conserved residue E that may be functionally important.	8.95852e-20
NC_009075.1\|WP_011853997.1\|3085192_3089314_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	2.27815e-72

>NC_009075.1|WP_011853997.1|3085192_3089314_-|cytochrome-P450
MSKHRQAPGPRGGLVMGNLAAYKRNPITMLLRLHQQYGDVARNRLGPFVTHAVAHPDHIQYVLQENHRNYVRGRFYDNFKMFFGDGLLTTDGEFWRRHRRVVQPLFHKKQVDAHTAAVGDAALALAHRWSALPPGKALDVVEEMMHLSLRMLGLMVFNTDVSSHAEAVGPAVRFGIEAMMPQGNLNDFIPRWAPTRFNRRIAHARRAIDTIVAKIIADHREARCEPSDVISLLLNARDPDTGAPMTQQEVHDEVMTVFLAGHETTGAGLAWALYALAQHPAVLRQLRDELDARLGGRAPTVQDFEQLPYLSQVVDEVLRVYPPIWGFTRDLVEDDEIGGYRIPARSSVFMSPYVTHRHPAFWRNPDAFDPENFASDAPARHRFVYFPFGGGMRKCIGFQTALLQMRVLVAVVAQHFDLNALPGHPIELGATISLRPVHGIRLIVKPRERQQSHLARVREHESARALRPLGDTATTAGAACPMTAAREPGASAAALAAVEAGALDAAHRGGAAAAAAGEPCPPRDPAEAAPLPLAAAPAPASPAVDADASARGVPAWRFTWRPVPVDPVPDEPSPALSGRRIALVNGRGGTAERVAAALARTCAKVSVFAPAASADHAEAARVFVNEAGPLDGIVDLGLEAPFALDDAGAWEAPMRRTVELLKACYGDWAAEDDTSRLFYVALTWMDGQMGYGETAGAQPLGGLWAGLAKTLPQELPNCNVRVLDIAPDETGRVDRLVVNELYRWGLFEVGYRGGVRYTLHAKRNELPPHAVDARTTLGAGDTVLFSGGARGIGLLCARALAERHGCTVIVTGRETPPDGGEPWMALDEPGFKHYGLEQLRAATPEHPPKAIRAALQRLKRRRELRTALDEMAALGLPVHYRVCDVTDRAAVRALCDELGDSLRMVIHNAGVDRPVRLIQKRAEDFADTVRTKVLGFANLCDAVRARPRLVQFCNVGSLTGRWGGMTGETDYAAANEALARLGLWAARHAFSPACGVKTLVWPTWEGVGMITNFAVTQRYVSPMNVDEGVRHWLRELAAPGSGEVMFMGAVGRAPTPVQIKGFVPIRELPNIGELVTRRHHVGEPVRFRPFKRFESRYVIDPAVAPYAHAFRFNGRAVLPASLVLEHACAVGDWVMPPTGEPRELSEMTNVVLRLDALPDVPAGGAPVELASEAAGYMIGDVWCVDVRCSDARTQAELLSMTLVYRPQPEQIGAAFARAPDTTPEPAPLTSAPHAAWNGELLPAGDWSVPDDASAGIVRIGRVPPAAVLSLWALPFPLELRLPVNHVEHVLRVLLAEWGAARADAPAVWRIGGAKLARLPAASADGVVEYAAGRFAVLDARGYVLLRIDDARVDGEPAQAALPETGALADPLTA
>NC_009075.1|WP_011853996.1|3083675_3085160_-|NAD(P)-binding-domain-containing-protein
MTTTNTTANTTTEPAAPGAARAAPATPPIRDCLDRYCIIGGGAAGIATAKNLREHGIAFDLIEREDDIGGTWYYGKPCSAIYQSVHMISSREFSEYTDYPMPADYPTYARGDQALAYLRDYARRFGVYEHAQFNRTVLEVAPLAHGGAWRVELDGHDVRHYKGVFVCNGHLSKPQVPDYPGRFDGLQLHSALYKTPDVLKGKRVLVVGAGNSGCDIAVEAVHHASAVFHSTRRGYFYWPKFLFGIPADRWAEWPLKLRMPLWARRFFGERLLRLTTAGQPEDYGLPKPDHKLFEAHFIINSTLFYHLGHGDLVAKPDVVELKGDRVAFSDGSEERIDAIVYATGFQLSFPFLDQSYLQWDKMQPRLYLNMFDRAHPNLFFIGLFQTSTGNWPLMDYQAQLVARYLRARDAAPRKAARLDRMIGRDRSNWNGGIRFSDTQRHVIEVEHFAYRLQLKRLIRALPDSRVAARQARPVAVASAVPAPAAAARARTGDA
>NC_009075.1|WP_004523242.1|3082974_3083676_-|ABC-transporter-ATP-binding-protein
MAIVRVENVSKTYLLDSVKVTGLAGVSVDIEANRFTVLSGPSGSGKTTLLNMIGCIDRPDAGRVIVAGQDTAALCDDALSDFRAREVGHVFQSFNLLPVLSAYENVEYPLLMARTPARERARRVAYLLDAVGLAGKGAHRPSQLSGGQRQRVAIARALAAGPSLVLADEPTANLDSVTGRAIIALMREMQRESGVSFIVSSHDPQVLEAADDVVQIRDGRIVERRRIAQEAQG
>NC_009075.1|WP_011853995.1|3081547_3082975_-|ABC-transporter-permease
MHTFMLALRNLQRNRRRSITTLLAMVVGVCAVLLFGGFSKDITFGLQTDFVRRSGHLQIQRHGYYQYGSGNPVAYGIGGYARLIAQLRDDPVLAPMIAVITPTLQFGGIAGNFEAGVSRTVLAQGAIADEQDRMQQWNDYGFPLTPKPYPLVGTAPDAAIVGNGVARVLHLCAPLRVPDCGDGDVARQPAPQAASGASGADAPADVLALAAAEAHAQESGRGERAGAAHIEVLAANAYGAPNVGGFTVAKAEQQGVKELDDVYLAMHLPRAQRLVYGGDAPRVTAIEIQLRHTAQLPAARARLDRLFGGRFEGQPLDVLDFAALNPFYDQTNRMFSMIFGFVFVLIGAIVLFVVSNTMSTAILERTVEIGTLRSMGVRRGGIQALFVCEGALLGVVGASIGVLVALALAFVVNHSGLAWTPPARIDSVALTVRVWGEWRLIALTFVGLAFVAGFSAWLPARHAARLSIIDALRYA
>NC_009075.1|WP_004190247.1|3080708_3081491_-|outer-membrane-lipoprotein-sorting-protein
MRRLFRQWWAGLSFCAAALAHAQTAPDPQVLLAQSDAIRTPAKSFVLTATLTEYRAGKQVDGNTLSIYSKPDAPGGAFRTLVRFVAPARDTGKLMLKNGNDLWFYDPANQASIRISPDQRLLGQAANGDVVTVNLAHDYRAALKGAEDVMDGDRQTRHCYKLSLTGNAPGLTYHRIEMWLDASNSRPVKAKFYSESDRLLKSAFYRRYTAELGVERPTETVIIDGLDPNWVTVMRFSGYAWRDIPDAWLQRDYLPRFQAQ
>NC_009075.1|WP_011853994.1|3079413_3080712_-|hypothetical-protein
MTRRAWAILMCAAAAAMPLRAAATGDADAVNDATNAALDLADATPVAAPETARPWKFSVQDAVRWSDGRGAASSWRNQLSLEFQFAHALTPTLGVNFAMRFDRFDPLASGAASHRDVTLVKEAYASWKPSALLALDAGRINERIGAAIGYNPTDFFKAGAVSLDVPPDPDSRHTNRLGSVAVRAQRVWDSGSIALMLSPRLASRSVPGDPFATSDLQRTNGVDRWMLVGSQRIAPAIQPQWVLYGESGQSPQFGQNLSVLLGNAVVAYAEWTGGWRASLIGSATGGGNRDRAFRTRSAVGFTWTLPVDLSLTAELQGNSGGASASRWRALQASDAYAWGRAVRTSIAAQELPSRHGLFLMAAWRNVFVRRVDLTGFAQLDLGAGQQYWLELRRRFDKFDLAVQFLRQTGPAWSRFGAMPEASSVQVLGIFYQ
>NC_009075.1|WP_004523246.1|3078975_3079374_-|DUF4345-domain-containing-protein
MSKRILQIATAILAAVPVTTGALGMMGIHDPLYASLGVALPADATLDGNLRFYAGVWFGLGLGAFWTIPNIERNGVLFRALWTMIFVGGIGRLISLVSLGAPFAPFIGFTVLEIVGAPLFVWWQSRVAATAG
>NC_009075.1|WP_004536799.1|3076950_3078054_-|triacylglycerol-lipase
MKSRFASAAAAVRGARKTLAKVWAAALVAAMCAFAAPAAHADAATGALDDYAATRYPIILVHGLTGTDDYFGVVPYWYGMRPDLQQHGATVFVADLSGFQSDIGPNGRGEQLLAYVQQVLAVTGAQKVNLIGHSQGGLTSRYVAAVAPELVASVTTIATPHRGSPFADFVLGALSLDPTGLSTPIFGALLNVFGILTSHTHNTNQDAIAALNALSTPYATQFDAQFPSAGLGAPGACASGAPSETVGGNVHLLYSWSGSAYQPITLLGLTTGALDKSTIPLVDPANVLDPSTLVFLTAGNIMALKQAGLNDGFTSTCSSLYGTVISTDYKWNHFDEINQLLGIRGAYAADPVAVLRTHANRLKLQGV
>NC_009075.1|WP_011204715.1|3076647_3076917_-|hypothetical-protein
MIVRRSRRRLRGWRRTRIHAAGASYVTRRADECAQDGQSTHDLYERQRDRPRFGHLAADPQRAAAGSFPALARAGEIRDRRDEAARRRG
>NC_009075.1|WP_073699289.1|3074192_3076634_-|EAL-domain-containing-protein
MNGTSSMREQALGMNDGGGQAAELRPALDVWPILLMVSVLVCVVIVSLAVVSFLRVYIGGESTWSKSQKDAVIYLIRYAETGDERAYKLYEAAIDKPYRLSLARAALQRKPPDRASAREAIIASGIDPTDATAAALLLPALSWVAKINYALQCWMQADVELAEFRSVASQLHALVSSGHRDDARVKALEYRAWEINERVSGLPDRFSKAFSDEFRSSVALLLVCYFVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFINNAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDHSKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERRLEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVLARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPRNLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYVQPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKLSALPAREYHEYNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLELASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVSAINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSPWREGGY
>NC_009075.1|WP_079997519.1|3096232_3097879_-|acyltransferase-domain-containing-protein
MVGKGNLMAQVAFLFPGQGAFYAGATRALSGAYPVVQRAMQAIDAVSVRRLRRPLLATVWDGHIGAEDLLQHAPDLLQLAIYATSVSYFEALRARGVRPDVLVGHSFGEIAALTCAGAFSIETGAEIVCDRIDALRAAAPADGRMAAVGASPDAVRAHLAACFRGAPDARAGCVRIAVENHVSQTVVSGACEYVDEFRAYCARNNISAQVLNSPYAFHHEDLENARIEFGRRLKAYKNKALEYPVYSPILNRYYTAADDLGACLARHLVLPVRFGDGVARLKAAGIGAFVECGALNALSRISVRALGPGAVKTFPGASSAGGELAGLENVLAYFNGGSVMNDDIRASNLQLDFDEFWRNSGPGIVDKIKGELKRFFDARGLQATPAPQIVADHGVAAGFAGGLTAGAADYAPKLAAGVSSAAAPVAAPVVAAAAPAAPLAVAPAAPVAQAAAVPAASARVPRDRLFVELVAIYAEAMEYPVEVFTETVELEAELGIDSVKQTEIIQRISARYGLPPLPANFRAGDFKAMGQIVDFVYEHQGEAALVTS
>NC_009075.1|WP_004523235.1|3098475_3101109_+|MMPL-family-transporter
MLTSVLVRLVAWSVRRPIWVVVLSLVIAALSSVYVAHHFKINTDISKLVENDPKWAALGRAIDDAFPQRNQTILAVVEAPAPEFAGAAADALAEGLRRETEAGRIGQVSEPAGGPLFEHDGLLFLPEQDVATTTAQLASARPLINVLAKDPSIAGLATTLSTTLGVPLQSGQVKLSGMAKLLSRSAATVDDVLAGKPAAFSWRALVDADAAREPARAFVTVQPVVNYGALKAGEQASRTIRATAQALKLDERFGAAVRLTGEQPLADEEFASVQDGALVNGIATLAIVLVILWIALRSKRMIASVFVTLFVGLVVTAALGLMMVGSLNMISVAFMVLFVGLGVDFAIQYGVKYREERHRDPNLDHALVGAAHAMGMPLTLATAAVAASFFSFLPTAYRGVSELGLIAGVGMFVALFTTLTLLPALLKLLAPPGERKPPGFPRLAPVDDYLDHHRKPILIGTLAVVIGALPLLAHLRFDFNPLHLKDPRSESMATLLALKDSPEASVNDVSLLAPSLAAANAAAQRLGALPEVGRTTTLSTFIPDAQPQKLATIAAAARELLPALTQPAAAPVPDAQRVAALKRASNLLEYASEDYPGPGAAAAKHLSESLAKLAAADAATRERAEHAFSVPLKIALNQLAMLLQPSEITRENLPPQIVRDWIAPDGRALVQISPKVVKGADPGDDAMLRRFAKAVKAAEPGAIGGPISILHSADTIIRAFLQAAALSVVSITVLLWITLRRFGDVLRTLVPLLVSGVVTLELCVLLGMPLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLQSSLTHAVLFSAATTATAFGSLWLSHHPGTASMGRLLALALSCTLIGAVVFQPVLMGKPRTKRVTNQSQGIDE
>NC_009075.1|WP_011854000.1|3101101_3102130_+|VacJ-family-lipoprotein
MNKMRTTASALAVCLLASGCATGPNRHPGDPLEPMNRAVFQFNDAVDSAIAVPIAKGYQKVTPTPLRTAISNFFSNLGDLGNIANNLLQLRITDATQDVMRVAMNSVFGVAGLIDVASLAGLPKHHQDFGLTLARWGVPAGPYLVLPVFGPSSIRDGVGRAVDVRFNLLNYIEPAARNPMYIAQFISARSDLLGATDLLQQAALDKYSFVRDAYVQQRRSLTYHGRSDDESLPHYDEPGGEPAGGPGGGAPGGLPQYEDPGEGAGGMPPGGAREPAGLPQYQDPGDEAAASAAASAASSASSASSASSASSASSASSASSASSASSVAPASAPAAQSPSSPN
>NC_009075.1|WP_011854001.1|3102369_3102933_-|4-carboxymuconolactone-decarboxylase
MRKTKMRLPEFNRDTATDEQKAVLDEILSGPRGNLNGPFLGWIESPALAQHAQRLGAFCRYRTGLPPRLSELAILVTAARWRSQAEWHIHHPIALEAGVPAAAAEAIRTGAALSFDDADDALIFRFATELYETKRVSDATYDAAIARFGHRVVVNLVALLGYYALVAMTLNVFDMRADGQTALPFAE
>NC_009075.1|WP_004529544.1|3102961_3104308_-|aspartate-aminotransferase-family-protein
MTTVFHRAPRASLPIAVAGDGIEIVDSTGTRYIDACGGAAVSCLGHSNQRVIDAIKRQAQQLPYAHTSFFTTQPAEALADRLVAAAPAGLEHVYFVSGGSEAIEAALKLARQYFVEKGEPARRHFIARRQSYHGNTLGALAIGGNAWRREPFVPLLIEAHHVSPCYAYREQRADETEEAFAQRLADELESRILALGPDTVAAFVAETVVGATAGAVPPVREYFRKIRAVCDKYGVLLILDEIMSGMGRTGYLFACEEDGVAPDLLTIAKGLGAGYQPIGATLVSDAIYRTIVDGSGFFQHGHTYVGHASACAAALEVQRVIDEERLLENVKARGEQLRASLAVRSAEQPHIGDVRGRGLFVGVELVRDRDTKAPFDPRLKLNALVKREAMQRGLMVYPMGGTVDGHLGDHVLLAPPFICTAPQIDTIVERLGDAIDAALASIGAAALR
>NC_009075.1|WP_004190976.1|3104304_3105375_-|peptidase-C45
MKFLTPVVVTGSPHDIGRQLGELARPAMDAYIAQSGAWRAVARWRGHPFVAELRRAAEAAFPALVAELDGIAAGLGWHAQDVFVWNCRGELIHNAPDGCTTLAACTPRERMIAHNEDGDPHLRGKCMLVDVRPDGKPGFVGFYYPGSLPGHTFAASRAGLVQTINNVRIRRPAAGVPRMIAARAVLDAASLDDALRVLRDTPHASGFHHMLGCAGDARIVSVEASVARTSVLAVEGVYGHANHLIHPGGDAEAQIVTASSADRQARLAQLLPPLRGAADASALWCVLADRAGGGLPIYRDDPDDPDDENTLATALFSIGDDGVAFEVRERGRVRFQQFVPRDAQRPPVHRHERGHA
>NC_009075.1|WP_004523231.1|3105387_3106110_-|glutamine-ABC-transporter-ATP-binding-protein-GlnQ
MVEFRNVSKSFGHVPVLKDIDLRIDAGEVVVVVGPSGSGKSTMLRCINALEKITGGDLLVDGQSVKGKAAVIHGIRLEAGMVFQQFNLFPQMTALENVMFGPIQVRGASRAQARDQAMALLAKVGLEARANHYPSELSGGQQQRVAIARALAIRPKLMLFDEPTSALDPELRHEVLKVMRDLANEGMTMIVVTHEIGFAKQVGTRLLFMDQGGIAEDGDPKTLIDHPPTPRLKDFLKHVS
>NC_009075.1|WP_004202330.1|3106112_3106769_-|glutamine-ABC-transporter-permease-GlnP
MQFDWSAIWAALPDLMDGVRLTVFIAFFGLAGGFLVGMIAGMFRAYGPAVLNVLAQVYIELIRGTPIVVQVMFLYFALPLLAHVRIDGLSAAVVAITLNSGAYLAEVVRGALLSIPKGLTEAGLAMGLSMPRVLVKIVGPLAFRRLIAPLGNQCIVSLKDTSLFIVIGVGELTRKGQEIIAGNFQAVEIWTAVAAIYLVLTGVMTLTLRFVEKRMRIL
>NC_009075.1|WP_011854002.1|3106833_3107586_-|glutamine-ABC-transporter-substrate-binding-protein-GlnH
MGRRSFIKTIVALALVGASVAGAHAKELVVGTDTSFMPFEFKQGDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSEPPKS
>NC_009075.1|WP_009927536.1|3107760_3108048_-|hypothetical-protein
MANRLNAGGRFAIGIGGPISPAPVPARERTAIAFGCGRDRTASCRSLRHSKRSQDGRLAAFALRPSIKFQPSRRRGDRRARPFSPFFPLFRRAAR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_009075_2	2.2\|2842818\|21\|NC_009075\|CRISPRCasFinder	2842818-2842838	21	NC_009075.1	2842850-2842870	1.0
NC_009075_2	2.2\|2842818\|21\|NC_009075\|CRISPRCasFinder	2842818-2842838	21	NC_009075.1	2842858-2842878	1.0
NC_009075_3	3.2\|3092304\|19\|NC_009075\|CRISPRCasFinder	3092304-3092322	19	NC_009075.1	3092340-3092358	1.0
NC_009075_3	3.2\|3092304\|19\|NC_009075\|CRISPRCasFinder	3092304-3092322	19	NC_009075.1	3092352-3092370	1.0

1. spacer 2.2|2842818|21|NC_009075|CRISPRCasFinder matches to position: 2842850-2842870, mismatch: 0, identity: 1.0

gacagcacgacagcacgacag	CRISPR spacer
gacagcacgacagcacgacag	Protospacer
*********************

2. spacer 2.2|2842818|21|NC_009075|CRISPRCasFinder matches to position: 2842858-2842878, mismatch: 0, identity: 1.0

gacagcacgacagcacgacag	CRISPR spacer
gacagcacgacagcacgacag	Protospacer
*********************

3. spacer 3.2|3092304|19|NC_009075|CRISPRCasFinder matches to position: 3092340-3092358, mismatch: 0, identity: 1.0

cagtcgtcgccgcagtcgt	CRISPR spacer
cagtcgtcgccgcagtcgt	Protospacer
*******************

4. spacer 3.2|3092304|19|NC_009075|CRISPRCasFinder matches to position: 3092352-3092370, mismatch: 0, identity: 1.0

cagtcgtcgccgcagtcgt	CRISPR spacer
cagtcgtcgccgcagtcgt	Protospacer
*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

95477 : 161928

Ralstonia_phage(28.57%)

transposase,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011852452.1\|95477_97673_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_076805246.1\|97870_98026_+	hypothetical protein	NA	NA	NA	NA
WP_144411142.1\|98176_98911_+	hypothetical protein	NA	NA	NA	NA
WP_144411166.1\|99464_100634_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.2e-32	30.4
WP_079997294.1\|101996_102251_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_009939053.1\|102247_103267_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004533753.1\|103286_103739_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_076830611.1\|104223_105144_+	ABC transporter permease	NA	NA	NA	NA
WP_079997296.1\|105127_105982_+	ABC transporter permease	NA	NA	NA	NA
WP_004552621.1\|105978_107010_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_011852462.1\|107597_107903_+	H-NS histone family protein	NA	NA	NA	NA
WP_079997522.1\|108231_111009_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-89	34.9
WP_011852464.1\|111022_113263_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	6.8e-23	27.4
WP_094188797.1\|113401_114940_+	DUF2875 family protein	NA	NA	NA	NA
WP_004523722.1\|114949_115213_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004523721.1\|115627_116047_-	YjbQ family protein	NA	NA	NA	NA
WP_004523720.1\|116066_116393_-	thioredoxin family protein	NA	NA	NA	NA
WP_004529618.1\|116863_117556_+	hypothetical protein	NA	NA	NA	NA
WP_079997298.1\|118141_118765_-	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_004523716.1\|118899_120495_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.9e-06	33.3
WP_041278789.1\|121644_123102_-	hypothetical protein	NA	NA	NA	NA
WP_154234199.1\|123446_123806_-	hypothetical protein	NA	NA	NA	NA
WP_041278791.1\|124654_127054_+	hypothetical protein	A0A2C9CZG8	Yersinia_phage	5.6e-07	46.1
WP_079997302.1\|127120_128608_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_004523708.1\|128643_128859_+	hypothetical protein	NA	NA	NA	NA
WP_079997305.1\|128831_129425_-	hypothetical protein	NA	NA	NA	NA
WP_004523706.1\|130009_130555_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_004533804.1\|130619_131357_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_079997523.1\|131580_134214_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_004529637.1\|134206_134779_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_079997524.1\|134843_135500_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011852476.1\|135502_137179_+	OmpA family protein	NA	NA	NA	NA
WP_004523700.1\|137567_138107_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004523699.1\|138140_139640_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011852478.1\|139839_140322_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_144411143.1\|140449_140992_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004523698.1\|140997_142347_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011852480.1\|142343_143645_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_011852481.1\|143659_147568_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004529647.1\|147757_148327_+	hypothetical protein	NA	NA	NA	NA
WP_011852483.1\|148424_151217_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.7e-35	26.0
WP_004523693.1\|151291_151561_+	PAAR motif protein	NA	NA	NA	NA
WP_011852484.1\|151573_155026_+	RHS repeat protein	NA	NA	NA	NA
WP_041278796.1\|154918_156277_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	3.4e-110	50.1
WP_009928058.1\|156309_157338_-	fimbrial protein	NA	NA	NA	NA
WP_004549343.1\|157392_158463_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_004523688.1\|158481_159531_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004547772.1\|159527_161408_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004523686.1\|161409_161928_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

750652 : 822404

Vibrio_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004525541.1\|750652_751420_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|751458_752460_-	HpnL family protein	NA	NA	NA	NA
WP_041278894.1\|752456_753230_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_011852788.1\|753226_753916_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_011852789.1\|754279_755794_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004530037.1\|757514_758453_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|758486_759035_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|759031_760543_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|760686_761214_+	hypothetical protein	NA	NA	NA	NA
WP_011852791.1\|761293_761725_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|761738_763601_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|763597_764587_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011852792.1\|764589_767460_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004525548.1\|767450_769742_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_011852793.1\|769907_772196_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_011852794.1\|772199_774416_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|774415_775486_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_011852795.1\|775488_776205_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|776247_776637_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004202226.1\|776642_777236_+	hypothetical protein	NA	NA	NA	NA
WP_004525552.1\|777232_778594_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530043.1\|778619_780335_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|780331_783835_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|783893_784253_+	hypothetical protein	NA	NA	NA	NA
WP_011852796.1\|784275_784707_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|784931_785303_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|785400_785574_-	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|785853_786753_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004199051.1\|786850_786979_+	hypothetical protein	NA	NA	NA	NA
WP_011852798.1\|786986_788306_+	glycosyltransferase	NA	NA	NA	NA
WP_004524286.1\|788302_789889_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_011852799.1\|790105_791113_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_079997361.1\|791238_791421_+	hypothetical protein	NA	NA	NA	NA
WP_011852800.1\|791417_793001_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004186853.1\|793727_794981_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011852803.1\|795516_797181_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	2.7e-56	31.6
WP_076907206.1\|797313_798879_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_011852806.1\|799067_800084_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|800559_801759_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_041278897.1\|801936_802962_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004523136.1\|803394_804669_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004535113.1\|804741_805713_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|805863_806397_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|806457_808521_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186901.1\|808523_810449_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_011852808.1\|810453_811626_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|811622_812408_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|812432_813701_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_021252051.1\|813721_814867_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|814976_815840_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011852809.1\|816020_817676_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|817762_818638_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004523143.1\|818781_819681_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186939.1\|819816_821370_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004535106.1\|821405_822404_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

2299525 : 2314366

Burkholderia_phage(40.0%)

integrase

attL 2296784:2296799|attR 2314784:2314799

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2296784:2296799	attL	NA	NA	NA	NA
WP_079997477.1\|2299525_2300236_+	helix-turn-helix domain-containing protein	A0A1B0Z078	Pseudomonas_phage	1.0e-17	31.5
WP_023358832.1\|2300232_2300517_+	hypothetical protein	Q76H12	Enterobacteria_phage	2.2e-11	45.5
WP_011853572.1\|2300645_2300963_+	hypothetical protein	NA	NA	NA	NA
WP_144411128.1\|2301100_2301208_+	hypothetical protein	NA	NA	NA	NA
WP_011853575.1\|2301391_2301739_+	hypothetical protein	A4JX37	Burkholderia_virus	1.7e-58	100.0
WP_041278991.1\|2301781_2302009_+	hypothetical protein	NA	NA	NA	NA
WP_011853577.1\|2302025_2302268_+	hypothetical protein	I6NVM7	Burkholderia_virus	1.1e-14	56.1
WP_011853578.1\|2302264_2302594_+	hypothetical protein	Q3HQW8	Burkholderia_phage	7.7e-08	61.8
WP_144411129.1\|2302590_2302854_+	hypothetical protein	NA	NA	NA	NA
WP_009977932.1\|2303184_2303466_+	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	6.1e-30	73.6
WP_011853580.1\|2303507_2304551_+	recombinase RecT	B5AX97	Iodobacteriophage	4.9e-56	52.7
WP_041279133.1\|2304550_2305168_+	hypothetical protein	NA	NA	NA	NA
WP_144411163.1\|2305175_2305931_+	hypothetical protein	NA	NA	NA	NA
WP_011853583.1\|2305927_2306173_+	hypothetical protein	NA	NA	NA	NA
WP_009977937.1\|2306169_2306355_+	hypothetical protein	A9YX20	Burkholderia_phage	4.0e-06	38.6
WP_103852160.1\|2306398_2307088_+	hypothetical protein	NA	NA	NA	NA
WP_079997581.1\|2307574_2308093_+	site-specific DNA-methyltransferase	B4UTY5	Rhizobium_phage	3.9e-14	52.7
WP_011853588.1\|2309567_2310008_+	hypothetical protein	A9YWU7	Burkholderia_phage	2.6e-19	86.4
WP_004532300.1\|2310019_2310307_+	hypothetical protein	A9YWU1	Burkholderia_phage	5.4e-50	98.9
WP_011853589.1\|2310303_2310639_+	hypothetical protein	A9YWU9	Burkholderia_phage	1.7e-31	91.4
WP_045591785.1\|2310638_2310872_+	AlpA family transcriptional regulator	A0A077K9Z8	Ralstonia_phage	1.6e-15	66.7
WP_011853591.1\|2310840_2312088_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.0e-140	61.8
WP_004187519.1\|2312440_2314366_-	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	1.8e-16	30.0
2314784:2314799	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009074

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009075

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection