CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009077	Mycobacterium sp. JLS, complete genome	3 crisprs	cas3,csa3,casR,WYL,cas4,DEDDh,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009077_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009077_1

2523548-2523632

Orphan

Consensus_repeat	Method
CCGTCTGACGACGATGCGGGGCGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009077_1

>merge|NC_009077|1|2523548-2523632|CRISPRCasFinder
CCGTCTGACGACGATGCGGGGCGAGGGACGAGCTCCGAGGAGGAGTCGGACCATCTAGACCCGTCTGACGACGATGCGGGGCGAG

>NC_009077|1|1|2523548-2523632|CRISPRCasFinder
CCGTCTGACGACGATGCGGGGCGAG	GGACGAGCTCCGAGGAGGAGTCGGACCATCTAGAC
CCGTCTGACGACGATGCGGGGCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009077.1\|WP_011559768.1\|2520615_2520939_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NC_009077.1\|WP_011559765.1\|2515012_2518351_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_009077.1\|WP_011855550.1\|2528480_2529731_+\|acetamidase	unknown	unknown	gnl\|CDD\|225279
NC_009077.1\|WP_011559780.1\|2534201_2535128_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NC_009077.1\|WP_011855545.1\|2518353_2519172_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NC_009077.1\|WP_003889986.1\|2519632_2519950_+\|hypothetical-protein	unknown	unknown	unknown
NC_009077.1\|WP_011855543.1\|2513352_2513853_+\|hypothetical-protein	unknown	unknown	unknown
NC_009077.1\|WP_011855541.1\|2511113_2512064_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NC_009077.1\|WP_011855546.1\|2519960_2520557_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NC_009077.1\|WP_011855544.1\|2513849_2515013_+\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_009077.1\|WP_011855542.1\|2512060_2513356_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_009077.1\|WP_011559773.1\|2525813_2526704_+\|3-beta-hydroxysteroid-dehydrogenase	unknown	unknown	gnl\|CDD\|187572
NC_009077.1\|WP_011559777.1\|2529806_2531804_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NC_009077.1\|WP_041925042.1\|2527610_2528369_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
NC_009077.1\|WP_011855547.1\|2520954_2522205_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NC_009077.1\|WP_011559774.1\|2526685_2527588_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NC_009077.1\|WP_011855551.1\|2531831_2533652_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NC_009077.1\|WP_011855552.1\|2535124_2536492_+\|16S-rRNA-m5C967-methyltransferase	unknown	unknown	gnl\|CDD\|237857
NC_009077.1\|WP_011559772.1\|2525162_2525738_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NC_009077.1\|WP_011559779.1\|2533645_2534182_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192

Protein	Function_ID	Function_description	E-value
NC_009077.1\|WP_011559768.1\|2520615_2520939_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	1.51798e-18
NC_009077.1\|WP_011559765.1\|2515012_2518351_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_009077.1\|WP_011855550.1\|2528480_2529731_+\|acetamidase	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	9.89591e-52
NC_009077.1\|WP_011559780.1\|2534201_2535128_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.16921e-160
NC_009077.1\|WP_011855545.1\|2518353_2519172_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.23513e-133
NC_009077.1\|WP_011855541.1\|2511113_2512064_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	3.14878e-177
NC_009077.1\|WP_011855546.1\|2519960_2520557_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	4.80146e-102
NC_009077.1\|WP_011855544.1\|2513849_2515013_+\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_009077.1\|WP_011855542.1\|2512060_2513356_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NC_009077.1\|WP_011559773.1\|2525813_2526704_+\|3-beta-hydroxysteroid-dehydrogenase	gnl\|CDD\|187572	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7. This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.06078e-115
NC_009077.1\|WP_011559777.1\|2529806_2531804_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NC_009077.1\|WP_041925042.1\|2527610_2528369_+\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	1.65006e-33
NC_009077.1\|WP_011855547.1\|2520954_2522205_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NC_009077.1\|WP_011559774.1\|2526685_2527588_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	9.24481e-86
NC_009077.1\|WP_011855551.1\|2531831_2533652_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	8.62092e-58
NC_009077.1\|WP_011855552.1\|2535124_2536492_+\|16S-rRNA-m5C967-methyltransferase	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	1.56723e-89
NC_009077.1\|WP_011559772.1\|2525162_2525738_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	7.782e-21
NC_009077.1\|WP_011559779.1\|2533645_2534182_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.88305e-50

>NC_009077.1|WP_011855547.1|2520954_2522205_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MDRKRIIVGVAGGIAAYKACTLVRQLTEAGHDVRVLPTESALRFVGAATFEALSGHPVHTGVWDDVHEVPHVRIGQDADLVVVAPATADLLARAVAGRADDLLTATLLTARCPVLFAPAMHTEMWFHPATVDNVATLRRRGAVVLEPASGRLTGADSGAGRLPEAEEIATLAQLLLVRGDALPYDLAGVKALVTAGGTREPIDPVRFIGNRSSGKQGYAMARVLAQRGADVTLIAGNTAGLVDPAGVEVVHIGSAAQLRDAVSKHAPAAHVLVMAAAVADFRPVHAATSKIKKSSDPGEDAPTIDLTRTDDILAGAVRARADGQLPNMRAIVGFAAETGDANGDVLFHARAKFKRKGSDLLVVNAVGDNRAFEVDNNDGWLLAADGTETALEHGSKTLMASRIVDAIVAFLQNSNG
>NC_009077.1|WP_011559768.1|2520615_2520939_+|DNA-directed-RNA-polymerase-subunit-omega
MSTPHADAQLTAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE
>NC_009077.1|WP_011855546.1|2519960_2520557_+|guanylate-kinase
MNTGRGVGRVVVLSGPSAVGKSTVVRCLRERIPDLYFSVSATTRAPRPGEVDGVDYSFVTPEAFQQLIDDGALLEWAEIHGGLHRSGTPARPVREATAAGRPVLIEVDLAGARAVKQAMPEALSVFLAPPSWEVLERRLVGRGTETPDVMSRRLDTARTELAAQSDFDVVVVNSQLESACSELVSLLVGHTSAGTNPA
>NC_009077.1|WP_003889986.1|2519632_2519950_+|hypothetical-protein
MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLKDAETDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFDQS
>NC_009077.1|WP_011855545.1|2518353_2519172_+|orotidine-5'-phosphate-decarboxylase
MFGQRLAEAVASRGPLCPGIDPHPELLTSWGLSVDADGLGRFCEICVEAFAGFAIVKPQVAFFEAYGSAGFAVLERTIAELRARGVLVLADAKRGDIGSTMAAYAQAWAGESPLAADAVTASPYLGFGSLQPLLDTAAAHGRGVFVLAATSNPEGASVQRARVDGRTVAQSIVDAAAAVNREAGGPGSVGVVVGATVTEPPDVSALGGPVLVPGVGAQGGRPEALGGLGGARPGQLLPTVSREVLRAGPDVDALRGAAERMRDDVAYLAHRV
>NC_009077.1|WP_011559765.1|2515012_2518351_+|carbamoyl-phosphate-synthase-large-subunit
MPRRTDLRHVLVIGSGPILIGQAAEFDYSGTQACRVLRAEGLTVTLINSNPATIMTDPEYADYTYVEPITPDFVERVIAQQAERGNKIDALLATLGGQTALNTAVALSENGVLERYDVELIGADFDAIQRGEDRQRFKDIVTKVGGESAKSRVCFTMEEVRETVGELGLPVVVRPSFTMGGLGSGMAYSAEDVERMAGHGLASSPSANVLIEESIFGWKEYELELMRDRHDNVVVVCSIENFDPMGVHTGDSVTVAPAMTLTDREYQTMRDLGIAILREVGVATGGCNIQFAVNPKDGRLIVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDEILNDITKETPACFEPTLDYVVVKAPRFAFEKFPGADATLTTTMKSVGEAMSLGRNFIEALGKVMRSLETGRAGFWTAPDPIATVDEVLENLRTPTDGRLYDIEFALRLGASVEQVAEASGVDPWFVDQIAGLVALRTELLDAPVLDGTLLRRAKNSGLSDRQIAALRPELAGEVGVRALRQRLGIHPVFKTVDTCAAEFEAKTPYHYSSYELDPAAESEVAPQAERPKVLILGSGPNRIGQGIEFDYSCVHAATTLSEAGFETVMINCNPETVSTDYDTADRLYFEPLTFEDVLEIYYAESASGAGGPGVAGVIVQLGGQTPLGLAERLEQAGVPIVGTSPKAIDLAEDRGAFGEVLRTAGLPAPRFGLATTFDQARRIAADIGYPVLVRPSYVLGGRGMEIVYDEQTLEGYITRATQLSPEHPVLVDRFLEDAIEIDVDALCDGTEVYIGGIMEHIEEAGIHSGDSACALPPVTLGRSDIESVRRATEAIAHGVGVVGLLNVQYALKDDVLYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAPVAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTGEVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRKHFEEPGAGRPARSAVEAIRAGDVAMVINTPYGNSGPRIDGYEIRSAAVSMNIPCITTVQGASAAVQGIEASLRGDIGVMSLQELHSELGN
>NC_009077.1|WP_011855544.1|2513849_2515013_+|carbamoyl-phosphate-synthase-small-subunit
MSNTSETRSGSRIDGAVALLVLEDGRVFTGVPYGAVGQTLGEAVFSTGMSGYQETLTDPSYYGQIVVATAPQIGNTGWNHEDAESRDDRIWVAGYAVRDPSPRASNWRATGTLDEELVRQGVVGIAGIDTRALVRHLRTRGAMKAGIFSGDESAAPMSELLERVRSQPGMLGASLADKVSTDDVYIVEPEGAHRFTVAAIDLGIKTNTPRNFARRGIRSHVLPARATFEQIADLKPDGVFLSNGPGDPAVADHVVEVTREVLGAGIPLFGICFGNQILGRALGRGTYKMVFGHRGINVPVMDHATGRVAITAQNHGFALEGEAGERFDTPFGAAVVSHTCANDGVVEGVKLVNGRAFSVQYHPEAAAGPHDANYLFDQFVDQMSEEK
>NC_009077.1|WP_011855543.1|2513352_2513853_+|hypothetical-protein
MNTGTLVTSLVLAAVIVVAIGLLIRAMMRGWHSRAQRQVKLIGKLPPLPDTVSQAVIPPMKGLYVGCTLAPNWHDRIVVGDLGYRTKAVLTRFPEGIMVQRSGAHSIWIPAESVTAIRTERGMVGKALTHDGILAIRWRLPSGTEIDTGFRGDDRTKYDRWLEEVA
>NC_009077.1|WP_011855542.1|2512060_2513356_+|dihydroorotase
MSLLIRGVRPYGEGDPVDVLVEDGQIAEIGERLSAPEGADAVDAHGQILLPGFVDLHTHLREPGREYAEDIETGSAAAALGGYTAVFAMANTTPVADSPVVTDHVWHRGQQVGLVDVHPVGAVTMGLQGKQLTEMGMMAAGVGQVRMFSDDGVCVDDPLIMRRALEYASGLGVLIAQHAEEPRLTVGAVAHEGPNAARLGLAGWPRAAEESIVIRDALLARDAGARVHICHASTAGTVELLRWAKEQGIAITAEVTPHHLLLDDSRLATYDGRNRVNPPLREAGDAEALRRALADGVIDCVATDHAPHAEHEKMCEFAAARPGMLGLQTALSVVVRTMVEPGLLSWRDVARVMSEAPARIVGLPDQGRPIEVGEPANLTVVDPDATWTVSGSALASRSDNTPFEEMTLPATVTLTMLRGKVTARDGKSPSL
>NC_009077.1|WP_011855541.1|2511113_2512064_+|aspartate-carbamoyltransferase
MTRHLLTAADLSRDEATAILDDADRFSQALLGREVKKLPTLRGRTVITMFYENSTRTRVSFEVAGKWMSADVINVSASGSSVAKGESLRDTALTLRAAGADALIIRHPASGAAQQLAEWTAAEAGAPSVINAGDGTHEHPTQALLDALTLRQRLGGIEGRRVVIVGDVLHSRVARSNVLLLHTLGAEVVLVAPPTLLPVGVRQWPVTVSHDLDAELPAADAVLMLRVQAERMNGGFFPSAREYSVRYGLSDKRQALLPDSAVVLHPGPMLRGMEISSSVADSSQSAVLQQVSNGVHVRMAVLFHLLVGAEQEAISA
>NC_009077.1|WP_011559772.1|2525162_2525738_-|TetR-family-transcriptional-regulator
MVRWQPDARGRLEQAALELYAERGFDGTTVADIADRAGLTERTFFRYFADKREALFGGQTAMIDLMVKAVAAAPDSVAPIEAVASALNAVAATFDGRLDDVRRRQAVIAATPALQERESSKLALLATALADALRARDVAETTARLAAETGVAVFRIAFERWVAGGDQRDLAQHIRELLDELATMTARPATT
>NC_009077.1|WP_011559773.1|2525813_2526704_+|3-beta-hydroxysteroid-dehydrogenase
MRIFVTGASGFIGSAVVAELIAAGHSVVGLARSSASADAIAAAGAEVHRGDLTDPDGIRAGADACDGVIHLAYRHDFDDYANAAELDRRAIQTLGAVLAGSDRPLVVASGMAGLASPTGFITEQVAAGAGSMRLSEAAALPWADHGVRVSILRLPPTVHGEGDHGFVAHLIGIARRQGVSGHPGDGTNRWPAVHRLDAAALFRRAVEDAPAGAVLHAVDDEGVPVRDIAEIIGRHLDVPVRSIPGPSTAAHFGWIGALFALDVPASSDSTRQAFAWKPTHVGLIDDLEQGHYFSGR
>NC_009077.1|WP_011559774.1|2526685_2527588_-|alpha/beta-hydrolase
MPFQFSVDEGAEVIRRKLRDLPRREVHPEVEAQDRTIPGPAGDIPIRVYRPATAESSPPVVVFFHGGGFAAGDLDTHDGECRHHAVAADAVVVAVDYRLAPEHPYPAAVEDAWAALTWVAGHGAELSVDTNRLAVAGDSAGGNLSAVMTHRARTRGGPPIAFQLLWYPVTMWDMSLPSVTENAGAPILDRTAMDGLSRWYAGELTDPGHELAPGLADDFTGLPPAYIAVAGHDPLRDDGIRYAELLSAAGVPVEVHNAETLVHGYLGYAGVVPSATAATDRGLAALRAALHPEAGQRPEK
>NC_009077.1|WP_041925042.1|2527610_2528369_+|lysoplasmalogenase
MSSIGGFSSATDTTSPYAHRRTALWWAAAAAVAAGYGVFLIVTALRVPSGAELTGQFVAQPAVKALAAVLLAVAAAGHPIRRERRWLVPALVFSACGDFLLAIPWWEPSFVLGLASFLVAHLCFLAALVPLAARSAPRSVAVALTVIACGALLVWFWPRLLADGMAVPVTAYITVLGAMVCAALLADLPTPWTALGAVCFAVSDAMIGIGKFVLAPEDTEALAVPIWWAYAASLLLITAGLFFGRTVNRPET
>NC_009077.1|WP_011855550.1|2528480_2529731_+|acetamidase
MAAACARDTSSATTADPPYASIPVLQPGQGDRSGDHYLSSLPDQVLWGYVPTVHATPVLRMRSGQTVTIDALSHEGILEDQGRNPVEYFGGLGVSEADVLDDAKAIAAEYNRTPRNFAKDGPHVVTGPIFVEGAEPGDVLKIETLETIPRVPYGVVSSRHGKGALGMTADKAAPAGISLAEVMPPTDTDGRSDPDPTKWGDVSVFTPVEEGRGVMPVGAGGSVRFPLNPFMGVMGVAFARDESLNAPNANSIPPTLGGGNIDIKLLGAGSTFYLPVFAPGALFYVGDPHMAMGDGEVALTAMEGSLRGTFRLTVCKPGSGDAPSVTYRYPFAETEQAWIPIGLSDPDGAVGGQGSDLDVAMRRAVVNALDYLERDRGMDRATAYAYLSAASDFTISQVVDRTVGVHGQIYKEHFGS
>NC_009077.1|WP_011559777.1|2529806_2531804_+|primosomal-protein-N'
MTKTRQPAEHEPIARVLPMLSVPHLDREFDYLVPAECSDDAQPGVRVRVRFHGRLVDAFLLERRSETDHPGQLGWLDRVVSPQQVLTPDVRRLVDAVAARYAGTRPDVLRLAVPPRHAGAEKKPAAELPAVDVPAIDLTAWRAYPRAEQFLGAVGEGRAARAVWQALPGERWATRLAEAAALTVGSGRGVLAIVPDQRDVDALHAAAVTLLADERVVALSAGLGPSQRYRRWLSVLRGGARFVIGTRSAVFAPVCDLGLVMVWDDGDDSLAEPRAPYPHAREVAMLRAHQLRCAALIGGHSRTAESQALVRSRWAHDLVAPRPVVRAAAPRVIALEDSGFEQERDPAAHTARLPSVALRTARAALQAGRPVLVQVPRRGYLPALACARCRAIARCRHCTGPLSLLERGGAAMCRWCGREELGLRCGRCGSDSVRAVAVGARRTAEELGRAFAGTPVVTSSGEAMVGTVADEPALVVATPGAEPEPAAGYGAALLLDGWALLGRQDLRAAEDTLRRWMAAAALVRSRADGGVVTVVAESAIPTVQALIRWDPVGHAESELDSRSEVGLPPAVHIAAVDGDFAAVTALLETADLPDDAETLGPVDLPVGARRPPGTSPDAAVSRMLVRVPRDRGLALAAALRRGTGVLSARHDTEPARVQIDPLHIG
>NC_009077.1|WP_011855551.1|2531831_2533652_+|DUF2207-domain-containing-protein
MRRLLAWSITLLLIAAGLLWPLLFDGGGSGGGTVDDPMVIRDYRAEFVVADDGELTAVETITGEFPADRHGIFRYWDVVNPNSPRIRQRPVVESVTRDGAPEPYEMLWESGERFRVAKIGSAEVTLSPGDHVFEMRYRIPGVLDPGDTGADRRFATTTGDPNAPSTFFWNVIAPSWNNRIDRAEISVTLPADVTGVQCSVGYGVGRACDLTTTGRTVRIEARDLPPRTPVTVRTGVDADPPPRDELPWSHRWDRILGGSVDGLTWMLGLSALAALGGYVWTRSAVERPPAFPLQYAPPPGIGPVQAEYIRTEKVPRHGLTATLFHLAEQDLVTLVQVNSKQWEVRGTAGKSRWADVDPVGVAVGSALKVIGTGTEFEAKHTARAGEKLSKARTDMAAAVKDWALDDGVMVKRGREGWLQTANILAAVLAVCGFFGWGFATTMAGLPFAMFFVVTIPAWFGGLGTRRTPEGRQLWSQVGGFHRMLCTDSAEARFDFAARKDLYTAYLPFAVAAGVAALWAKKYEMVMGVPAPQPEWYHSSTPSGSSFTGGSDGGGGFESFESALSSSINAYTASQAASSSSSSSSSSGSSFSGGGGGGGGGGGGGSW
>NC_009077.1|WP_011559779.1|2533645_2534182_+|LemA-family-protein
MVSFVLVLVLVLAVLALAGFVMGYNKLRAADVRVAEALAGIDVELTRRASLIPSLVHTVQTFAAHEKTILDHVSTARAAVASATAGRSVAQRSAAERELDTAVGQVLALGQAYPKLNSSANFLDLQRNLADTENKLAFARQYYNDAVATLNRLTTTIPWMFVAGPAGVSEREYYQTPR
>NC_009077.1|WP_011559780.1|2534201_2535128_+|methionyl-tRNA-formyltransferase
MRLVFAGTPEPALPSLQRLIASPRHEVVAVLTRPDAAAGRRGRPTPSPVARLALDHDIPVLRPPKPNSEEFVAELRELAPDCCAVVAYGALLSERLLAVPPHGWINLHFSLLPAWRGAAPVQAAIAAGDAVTGATTFLIEPALDSGPVYGVVTETIRANDTAGELLTRLAESGAHLLESTLDGIADGRLQAVPQPADGVTVAPKITVDEARVRWDLPAHVVDRRIRAVTPNPGAWTVIGDARVKLGPVAPESAEPLAPGAIRVLKNAVHVGTATEPVRLGTVQPPGKKPMNAADWARGARLDASVSAQ
>NC_009077.1|WP_011855552.1|2535124_2536492_+|16S-rRNA-m5C967-methyltransferase
MTRPPHRPQRNRRKPLDPARRVAFDVLRAVSERDAYANLALPALLNERGLDGRDAAFATELTYGTCRSRGLLDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELDALLASDDARPLVHLAARPGVLSAEELAAAVGGEVGRYSPYAVYLPGGDPGRLDPVRDGSALVQDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAALAPGPLTAVEPAPRRAEMVEENTRGLDVTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPGLARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQPVTALDTRALFDPVDDLGDGPYVQLWPHRHGTDAMFAAALQVI

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Crispr_ID: NC_009077_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009077_2

4951810-4951896

Orphan

Consensus_repeat	Method
GCATCATCCGCCGTCACCCGACCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009077_2

>merge|NC_009077|2|4951810-4951896|CRISPRCasFinder
GCATCATCCGCCGTCACCCGACCGGCGCCCAGCCCGTCGTGCCGAGCGCCCAGCAGACCGGCATCATCCGCCGTCACCCGACCGGCG

>NC_009077|2|2|4951810-4951896|CRISPRCasFinder
GCATCATCCGCCGTCACCCGACCGGCG	CCCAGCCCGTCGTGCCGAGCGCCCAGCAGACCG
GCATCATCCGCCGTCACCCGACCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009077.1\|WP_011561705.1\|4949236_4950400_-\|succinyl-CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NC_009077.1\|WP_011856946.1\|4955288_4957331_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224748
NC_009077.1\|WP_011856950.1\|4962407_4962797_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|224861
NC_009077.1\|WP_011856942.1\|4948323_4949226_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_009077.1\|WP_011856948.1\|4958990_4960655_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_009077.1\|WP_011561702.1\|4945728_4946577_+\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274680
NC_009077.1\|WP_011561709.1\|4954939_4955236_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236117
NC_009077.1\|WP_011856949.1\|4960704_4961454_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181324
NC_009077.1\|WP_011856951.1\|4962815_4963580_-\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
NC_009077.1\|WP_011856945.1\|4952386_4954741_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NC_009077.1\|WP_011856940.1\|4944470_4945628_-\|dimethyl-sulfone-monooxygenase-SfnG	unknown	unknown	gnl\|CDD\|274923
NC_009077.1\|WP_011561717.1\|4963607_4964660_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NC_009077.1\|WP_011856943.1\|4950662_4951745_+\|M23-family-peptidase	unknown	unknown	gnl\|CDD\|366703
NC_009077.1\|WP_011561714.1\|4961527_4962391_-\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NC_009077.1\|WP_011856947.1\|4957490_4958939_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NC_009077.1\|WP_011856938.1\|4939732_4941316_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_009077.1\|WP_011856939.1\|4941961_4943380_-\|hypothetical-protein	unknown	unknown	unknown
NC_009077.1\|WP_011561700.1\|4943437_4944325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375092
NC_009077.1\|WP_011856941.1\|4946648_4948178_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|236204
NC_009077.1\|WP_011561698.1\|4941312_4941942_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544

Protein	Function_ID	Function_description	E-value
NC_009077.1\|WP_011561705.1\|4949236_4950400_-\|succinyl-CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NC_009077.1\|WP_011856946.1\|4955288_4957331_-\|acyltransferase-family-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.28083e-68
NC_009077.1\|WP_011856950.1\|4962407_4962797_-\|phage-holin-family-protein	gnl\|CDD\|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	1.5624e-25
NC_009077.1\|WP_011856942.1\|4948323_4949226_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NC_009077.1\|WP_011856948.1\|4958990_4960655_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_009077.1\|WP_011561709.1\|4954939_4955236_+\|chorismate-mutase	gnl\|CDD\|236117	PRK07857, PRK07857, chorismate mutase.	2.81797e-39
NC_009077.1\|WP_011561702.1\|4945728_4946577_+\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274680	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity].	7.95963e-89
NC_009077.1\|WP_011856949.1\|4960704_4961454_-\|short-chain-dehydrogenase	gnl\|CDD\|181324	PRK08251, PRK08251, SDR family oxidoreductase.	2.0443e-163
NC_009077.1\|WP_011856951.1\|4962815_4963580_-\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	4.57389e-141
NC_009077.1\|WP_011856945.1\|4952386_4954741_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_009077.1\|WP_011856940.1\|4944470_4945628_-\|dimethyl-sulfone-monooxygenase-SfnG	gnl\|CDD\|274923	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG. This family of FMNH2-dependent members of the luciferase-like monooxygenase (LLM) family includes SfnG, a monooxygenase that converts dimethylsulphone (DMSO2) to methanesulphonate. This step can be followed immediately by methanesulfonate sulfonatase (an alkanesulfonate monooxygenase - see TIGR03565) for the FMNH2-dependent conversion an inorganic form. [Central intermediary metabolism, Sulfur metabolism].	0
NC_009077.1\|WP_011561717.1\|4963607_4964660_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.22002e-68
NC_009077.1\|WP_011856943.1\|4950662_4951745_+\|M23-family-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.85987e-42
NC_009077.1\|WP_011561714.1\|4961527_4962391_-\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	7.29499e-67
NC_009077.1\|WP_011856947.1\|4957490_4958939_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NC_009077.1\|WP_011856938.1\|4939732_4941316_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_009077.1\|WP_011561700.1\|4943437_4944325_-\|hypothetical-protein	gnl\|CDD\|375092	pfam17270, DUF5336, Family of unknown function (DUF5336). This Actinobacterial family of proteins has no known function. Most of the family members are predicted to have have 4 trans-membrane regions.	4.73071e-59
NC_009077.1\|WP_011856941.1\|4946648_4948178_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|236204	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.	0
NC_009077.1\|WP_011561698.1\|4941312_4941942_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	6.28927e-104

>NC_009077.1|WP_011856943.1|4950662_4951745_+|M23-family-peptidase
MAAHRSSRSREGASTNARQRQGVSIPAERPAEVTDIIPFNEFGDLDDIDFRDSTAFDRDSQIIRAPELDDLHDTDDLIPLRLAIPAQFRAEGDADTPRRSRAYRESHTDVSDGAAATDIIDLRGRRAAHRKEAEGPIKSRLVIAAMAAGATAAGAYSMTQNTAPATTDTVLASGETTVEGASISGSVDGMQIVSVASTANTAVHHEEIQKAAAFAQERAEREARQMRPLYVMPTKGVWTSGFGYRWGVLHGGIDIAGPIGTPILAAADGVVIDVGPTAGYGAWVKLRHADGTVTLYGHLNTWSVSMGEQVMAGDQIATMGNRGNSTGPHLHFEVMVGGSNRIDPVGWLSKRGISTGSYVG
>NC_009077.1|WP_011561705.1|4949236_4950400_-|succinyl-CoA-ligase-subunit-beta
MDLFEYQAKELFAKHNVPTTPGRVTDTAEDAKAIAEEIGKPVMVKAQVKVGGRGKAGGVKYAATADDAFTHAQNILGLDIKGHVVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGVEIEEVAATKPDRLARIPVDATKGVDEAFAREIAEKGHLPAEVLDAAAVTIAKLWEVFVGEDATLVEVNPLVRTPDDQILALDGKVTLDANADFRHPEHAEFEDRDATDPLELKAKENDLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGEKHNGVKPANFLDIGGGASAEVMANGLDVILNDSQVKSVFVNVFGGITACDAVANGIVKALEILGEEANKPLVVRLDGNRVEEGRKILADANHPLVVLAQTMDEGADKAAELANK
>NC_009077.1|WP_011856942.1|4948323_4949226_-|succinate--CoA-ligase-subunit-alpha
MSIFLNKDSKVIVQGITGGEGTKHTALMLKAGTQLVGGVNARKAGTTVSHVDKDGKDVELPVFGSVGEAMKETGADVSVVFVPPKFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNVEKGQKTRIIGPNCPGIITPGEALAGITPANITGSGPVGLVSKSGTLTYQMMYELRDFGFSTAIGIGGDPVIGTTHIDAIEAFEKDPETKVIVMIGEIGGDAEERAADYIKDNVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKKEALEAAGVKVGKTPSETAQLAREILQNQ
>NC_009077.1|WP_011856941.1|4946648_4948178_-|acetyl-CoA-acetyltransferase
MVDPRTPVIVGVGQFTERIDDDGYRGMSAVDLATEATRAALSDTGADTGAVAQAIEVFAGLRQFEICTPFADPPLGASDNYLRSVAKRVGADPARAVLEPIGGNGPQKLMTEFAGAIAAGDIEVALVVGSEPGSTAKYFAKRDEKPDFTERVGGQLEDRGYGFEQYMSDYTVAHGLTGAPVQYGLLDNARRAAKGLGVAEYRREMAELFAPFSAVAAKNPYSSSPVERSVDEIVTVTDENRMICDPYPRLLVARDTVNQGAAAIVMSVAAARRLGVPEAKWVYLRGHADQTEQDLLDRERLGVSVSAKQAVAEALRVAGIGIDDVATFDLYSCFPFPVFAVCDEFGLDADDPRGLTLTGGLPYFGGPGNSYSLHGIAETVAAMRDNPGSYGLVGANGGVMSKYSVGVYSTEPADWAADRSKELQADIAGLPKVPVTRHADGRGTVETYSARYDWPVRTGIIIGRLDADGSRFLAISEDDDLVALMSDGDPLGAAIEVRPDGDKNRATLA
>NC_009077.1|WP_011561702.1|4945728_4946577_+|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRYMRTLDPWVSLGTACAVTSRVRLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGWNTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGEFVNFGPSWAWPKPVQAHIPVLVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPDPDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV
>NC_009077.1|WP_011856940.1|4944470_4945628_-|dimethyl-sulfone-monooxygenase-SfnG
MSTERIADHVKFAYWVPNVSGGLVTSTIEQRTDWNYEYNKKLAQTAENNGFEYALSQVRYEASYGAEYQHESTSFSLALLLATERLKVIAAVHPGLWQPAVLAKLGATADHLSGGRFAVNVVSGWFKDEFTHLGEPWLEHDERYRRSAEFLQVLRKIWTEDDVDFRGDFYRIHDFTLKPKPVNTPERPNPELFQGGNSTAARRNGGRYANWYFSNGKDFDGITEQIVEVRDHARAAGGAGNSAAVGREVKVGLNGFIIARDTEKEARDTLREIIEKADKPAVEGFRSAVQQAGNSTADKKGMWADSSFEDLVQYNDGFRTQLIGTPEQIAERIAAYRKRGVDLILGGFLHFQEEIEYFGARVLPLVREIEASDASSADAPALATV
>NC_009077.1|WP_011561700.1|4943437_4944325_-|hypothetical-protein
MTYSPGSPGYPPANQPTTQFSAPTQHFGKVPEQPAAGEGPNKLPAYLLMVVAALGLLVYLCNFGPIFEVSASDFLGQGGTVSGSTLGIGLAVISALTAGLLAGVTLLSKGRTYVAIAAVLSVLALLLVIAELINKPSEASIGWALYALIVLSLLQAGSAVAALLFDTGVLTPPTPRPKYDQQQQYGQYGGPGPYYGQPHSGAHQPQQLHTGSHQQAPQQQRPGYPSQYGGGYPGAGGPSTGGFQSSGQQSGPPTPPTGFPTYGQPQQQQGGGSGQGGSGQGQQPPTSQQSGQNPS
>NC_009077.1|WP_011856939.1|4941961_4943380_-|hypothetical-protein
MDNRPVGTRQARELLRVAFGPSVVALVVIAAVTLLQLLIANSDMTGAFGAIASMWLGVHLVPVSIGGSELGAMPLMPALMMVWGTARTTAAATPPHGSWFVTRWVVASALGGPLLIAAIALAVIHDAASVLTELQTPSALRAFGGVLVVHLIGAAIGVASRVGRRTVLTSPLPNWLPDAFRAAAAGVLALAGLCGVVIAGSLVVHWSTMHELFAITDSVFGQFSLTVLSLLYLPNVVVGAAAVAVGSSAHIGLATFSSFTVLGGDVPALPVLAAVPEPPLGPVWVALLIVGAAAAVAVGQQVARRPAPIHIAAAKLVVASAVAALTMALLGEAGGGRLGNFGQVGVDQTTFGPGVFLWFTVIGGLTVVMSGGIVRRPRRVRATEPEPEPEPEAAPEQDLDDAETGPIVDPVAAAPEPVTAEPVAEPVPGEPDPALDPEEHFIVDDAGSPPNDSAPNDSAPNDSAPTDGEPRR
>NC_009077.1|WP_011561698.1|4941312_4941942_-|phosphoribosylglycinamide-formyltransferase
MQQPLRVPPSAPARLVVLASGTGSLLASLLESTVDDYPARVVAVGTDRTCAALDIAAAAQVPTYTVRLGEYPDRTAWDAAVTAATAEHEPDLVVSAGFMKILGPEFLNRFPGRVVNTHPALLPAFPGAHAVADSLAYGVRVTGCTVHLVDAGMDTGPILAQEAVAVRDGDDEATLHERIKVVERRLLVDVLAAMAQRGVTWTGRKATIG
>NC_009077.1|WP_011856938.1|4939732_4941316_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase
MSGDQGQAGAKRPIRRALISVYDKSGLIDLARGLHEAGVDIVSTGSTAKTIADKGIPVTPVEFVTGFPEVLDGRVKTLHPHIHAGLLADTRKPEHVEALAKLGIAPFDLVVVNLYPFSETVESGASVDECVEQIDIGGPSMVRAAAKNHPSVAVVVEPNGYDGVLAAVRTGGFTLAERKILASLAFRHTAEYDVAVASWMGSTLAPEEPAQKLPAWVGGTWRRAAVLRYGENPHQQAALYRDATAWPGLAQAEQLHGKEMSYNNYTDADAAWRAAFDHEEICVAIIKHANPCGIAISSVSVADAHRKAHECDPLSAFGGVIATNSSVSVEMAETVADIFTEVIVAPAYEPGAVEILSRKKNIRILLAAQPPTTGTELRPISGGLLLQQRDALDADGDDPVNWTLATGEPADPATLANLKFAWRSCRAVKSNAIVVVADGATVGVGMGQVNRVDAARLAVQRAGDRVRGAIAASDAFFPFPDGLETLTEAGVKAIVHPGGSMRDDVVTEAAAKAGISLYLTGARHFAH
>NC_009077.1|WP_011856945.1|4952386_4954741_-|DNA-helicase-PcrA
MSVNVTEPRSRPDDRAEELLDGLNPQQRQAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVGLIGPRARSMWVATFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLLLMIGKDMGLDTKKYSPRLLSNGISNLKNELIGPEQAAAEASEAADDLARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFPQIAQYYRRRFRHILVDEYQDTNHAQYVLVRELAGHGAHDTDDDGVAPAELCVVGDADQSIYAFRGATIRNIEDFERDYPNATTILLEQNYRSTQTILNAANSVIARNAGRREKRLWTDSGHGELIVGYVADNEHDEARFVAQEIDRLADDGHSYNDFAVFYRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPMLNTRSEKCIASFVQMLDDLRGRLGDELGELVEAVLDRTGYRAELEASNDPQDLARLDNLNELVSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPNELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELIDWRRTDPTPSFSAPGRMSSGSSGTGFGAPRPSPMRSGGGKKPLIVLEPGDRINHDKYGLGRVEEVSGVGESAMSLIDFGSAGRVKLMHNHAPVQKL
>NC_009077.1|WP_011561709.1|4954939_4955236_+|chorismate-mutase
MRPEPPHEESEMSIETDQSLDIDALRQEIDELDAAILAAVQRRTEVSKIIGRARMASGGTRLVHSREMKVIERYSVLGPEGKDLAMLLLRLGRGRLGH
>NC_009077.1|WP_011856946.1|4955288_4957331_-|acyltransferase-family-protein
MTAVTAAPVRVVARRRWVAPVAGRTRRGTAGRREIPALDGIRAVAVALVLADHGGVPGVSGGFLGVDVFFVLSGFLITSLLLDELGRTGRVDLRGFWIRRARRLLPALLAMVAAVVAARVFFPPDAVTTLRDDAVAAFFWVANWAFVAQHTDYFSQGSPPSPLQHTWSLGVEEQFYLVWPLLLIAVVGVLAIRRSAPTLRAVRWGVFGLAVVGGAASAAAAVLLTSEASANRVYFGTDTRVQALLIGAAAAALLVRDWSTVTMGTPIRARWGRWVARLLSVVGLAGLAVLAHYATGAPAEYRMGLFTAAAAAAVLVVATAALDQAGPVARLLALRPLVWLGTISYGVYLWHWPIFLFLNGERTGWTGWPLLIARCAATLAVAVLSYWLLERPIRRWRPATVPQLPLALATAATAAVVTISVVPVGVQPSEDPSTNLLDINSAAAVLPERPIPVGAVAPQRPPGTRSVAVFGDSVAWTLMRYLPETPGLHFSNYTTIGCGIARGGPYKTTGQTLTQKPECETWPTRWAQRIGHDRPDVVLLMIGRWELVDRINEGKWTHVGDDAYDGYLRGELDRALDILSSTGARVVVTTAPYNRRAEQADGTLYPEDDPDRADAWNELLREATAKRPNVTVLDLNKKLSPRGYYTNRVEGIQMRDDGVHPTKEAVEWLTPWLTEALSKK
>NC_009077.1|WP_011856947.1|4957490_4958939_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MDTTALLKSVPTGLWIGGEEREAKSTFNVLDPSSDEVLVAVGDATAEDAVAALDAACAVQAEWAATPARKRGEILRSVFETLTDRADDIAALMTLEMGKVLAESKGEVTYGAEFFRWFAEEAVRIGGRYTPSPAGTGRIIVTKQPVGPCYAITPWNFPLAMGTRKMGPAFAAGCTMIVKPAQETPLTMLYLAKLMAEAGLPKGVLSVLPTSSPGPVTEALVDDGRLRKLTFTGSTGVGKSLVKQSADKLLRTSMELGGNAPFIVFDDADIDAAVDGAMLAKMRNGGEACTAANRFHVANSVREEFTEKLVKRMSEVTLGNGLDESATLGPLINNKQLQKVTELVSDAVSRGATVAVGGVAPGGPGNFYPATVLADVPADARILKEEVFGPVAPITGFDSEEEGVAAANDTEYGLAAYVYTRSLDRALRVAEAIESGMVGINRGVISDAAAPFGGVKESGFGREGGTEGIEEYLDTKYIALTK
>NC_009077.1|WP_011856948.1|4958990_4960655_+|glucose-6-phosphate-isomerase
MTADDQLTDISATSAWQALQRHHGEIAGRHLRELFAEDPSRGTELTVSVGDLYIDYSKHRVTRETLRLLVDLARAAGLEKRRDAMLSGVHINTSEDRAVLHTALRLPRDASLTVDGQDVVADVHEVLDRMGDFTDRLRSGDWTGATGERIRTVVNIGIGGSDLGPVMVYEALRHYADAGISARFVSNVDPADLVAKLDGLDPATTLFIVASKTFSTLETLTNATAARRWLTDTLGDAAVARHFVAVSTNQKLVDEFGIDTANMFGFWDWVGGRYSVDSAIGLSVMAAIGRERFAEFLAGFHLVDEHFRTAPLEANAPALLGLIGLWYSNFFGAQSRAVLPYSNDLSRFAAYLQQLTMESNGKSVRADGTPVSTDTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFSQPTDDLPTADGTGSMHDLLMSNFFAQTQVLAFGKTAEEIAAEDTPADVVPHKVMPGNRPTTSILATKLTPSVVGQLIALYEHQVFTEGVVWGVDSFDQWGVELGKTQAKALLPVITADDSPAEQSDTSTDALVRRYRAERGRSA
>NC_009077.1|WP_011856949.1|4960704_4961454_-|short-chain-dehydrogenase
MTRQRILITGASSGLGAGMARAFAAKGRDLALCARRVDRLDELKAELTQRYPEITVAVAELDVNDHDQVPKVFAALSDELGGLDRVIVNAGLGKGAPLGSGKLWANKATIETNLVAALVQIETALEMFKRTGAGHLVLISSVLGNKGVPGVKAAYAASKAGVSSLGESLRAEYAKGPIRVTVLEPGYIESEMTSKSASTMLMTDTDTGVAAMVRVIEKEAGRAAVPWWPWAPLVQLMRVLPPRLTRLFA
>NC_009077.1|WP_011561714.1|4961527_4962391_-|Fpg/Nei-family-DNA-glycosylase
MPELPEVEALADHLRRHAVGLPIGRVDVSAFSVLKTFDPPITALHGREVTDAHRWGKYLGLQAGDLYLITHLSRAGWLRWSDKLAAAPLKPGKGPIALRVHLGTPGAAPGFDLTEAGTQKRLAVWLVSDPSAVPGIAALGPDALELTADELGVLLSKQSGRIKTVITDQKVLAGIGNAYSDEILHVAQLSPFATANKLTPEQVATLHDAMLSVLTDAVSRSVGQQAATLKGEKRSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGRVLADRRLSRLLK
>NC_009077.1|WP_011856950.1|4962407_4962797_-|phage-holin-family-protein
MGFLLRAAVTGVALWLVTQLVSGMEFVGGENTLQRVGIIFVVAVVFGLVNAIVKPIVQILSIPLYVVTLGLFHVVVNALMLWLTAWITEHTTHWGLYIDDFWWTAVWAGIVLSIVSWVLSVLSGNLIKR
>NC_009077.1|WP_011856951.1|4962815_4963580_-|precorrin-6A-synthase-(deacetylating)
MTRRIHVIGIGAGDPDYVTAQAVAALNDTDVFFAMDKGSRTRGGQQADTKDDLVALRRLICERFITEPGYRFVEMPDPVRAKSGDYRQAVDEWHAARARLWAEAIERELDDDGVGAFLAWGDPSLYDSTLRILDRVAAHVDIEYDVIPGVTAIQALTARHRIPLNDVGEPVLITTGRRLREQGLTGAAVVMLDADCAFTGTPAQTRIWWGAYLGTADELLVSGTVGEVGERIVALRAEARERHGWIMDTYLLRP
>NC_009077.1|WP_011561717.1|4963607_4964660_-|YihY/virulence-factor-BrkB-family-protein
MAEAASTKHRAPDPDDPRKPESPTDLTKPSAFYVLRKTAREFGHDQCTDLAAALTYYAVLSLFPAVLVMVSLLGVFGQGRRTTDALLDIVSDVAPASTVDTLRPTIEQLVESPSAGFALVIGILTALWSASGYVGAFGRAMNRIYEVAEGRPVWKLRPLQLVLTFAALLGAALVAFMLAVSGPVAEALGNAIGLGEAAVTAWSIGRWPVILLLVVVAVAVLYYATPNVQQPKFRWISLGAGLAILTWIVASVGFGFYVANFSSYNKTYGTLAGVIIFLLWLWITNLALLFGAELDAELERGRQLQAGLPAERELQLPPRDTRVIEKKEAAIEEDVERAKALRRSRGRDDG

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Crispr_ID: NC_009077_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009077_3

5881863-5881963

Orphan

Consensus_repeat	Method
GGCCACGACGGCGGGGCCGACGGCACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009077_3

>merge|NC_009077|3|5881863-5881963|CRISPRCasFinder
GGCCACGACGGCGGGGCCGACGGCACCGCTGACGCGGGCGAGGGAACCGCCGACGGCGGTTCGAACCCCGAAGGCCACGACGGCGGAGCCGACGGCACCGC

>NC_009077|3|3|5881863-5881963|CRISPRCasFinder
GGCCACGACGGCGGGGCCGACGGCACCGC	TGACGCGGGCGAGGGAACCGCCGACGGCGGTTCGAACCCCGAA
GGCCACGACGGCGGAGCCGACGGCACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009077.1\|WP_011857521.1\|5883187_5884075_+\|sucrase-ferredoxin	unknown	unknown	gnl\|CDD\|227101
NC_009077.1\|WP_011562620.1\|5880614_5881070_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_009077.1\|WP_011562621.1\|5881163_5881682_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NC_009077.1\|WP_011857525.1\|5886327_5887704_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NC_009077.1\|WP_011857517.1\|5874876_5876997_-\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NC_009077.1\|WP_011857515.1\|5871605_5872313_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|198080
NC_009077.1\|WP_011562631.1\|5889436_5889787_+\|hypothetical-protein	unknown	unknown	unknown
NC_009077.1\|WP_011562618.1\|5879088_5879580_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_009077.1\|WP_011857519.1\|5879583_5880552_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|187539
NC_009077.1\|WP_011857514.1\|5870879_5871590_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|198080
NC_009077.1\|WP_011857516.1\|5872747_5874874_-\|5-oxoprolinase	unknown	unknown	gnl\|CDD\|376810
NC_009077.1\|WP_011768422.1\|5888769_5889432_+\|thiocyanate-hydrolase-subunit-gamma	unknown	unknown	gnl\|CDD\|188402
NC_009077.1\|WP_011857520.1\|5881976_5883191_+\|cupin	unknown	unknown	gnl\|CDD\|369647
NC_009077.1\|WP_011562629.1\|5887866_5888706_+\|nitrile-hydratase-subunit-beta	unknown	unknown	gnl\|CDD\|376740
NC_009077.1\|WP_011857526.1\|5889805_5890585_+\|hypothetical-protein	unknown	unknown	unknown
NC_009077.1\|WP_011857527.1\|5890646_5893205_+\|DUF3516-domain-containing-protein	unknown	unknown	gnl\|CDD\|378795
NC_009077.1\|WP_011857524.1\|5885734_5886325_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009077.1\|WP_011857523.1\|5884536_5885499_-\|NmrA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|187542
NC_009077.1\|WP_011562616.1\|5877168_5877756_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_009077.1\|WP_011857518.1\|5877721_5878999_-\|Bcr/CflA-family-drug-resistance-efflux-transporter	unknown	unknown	gnl\|CDD\|340878

Protein	Function_ID	Function_description	E-value
NC_009077.1\|WP_011857521.1\|5883187_5884075_+\|sucrase-ferredoxin	gnl\|CDD\|227101	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones].	4.84251e-25
NC_009077.1\|WP_011562620.1\|5880614_5881070_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.10488e-20
NC_009077.1\|WP_011562621.1\|5881163_5881682_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	2.7476e-16
NC_009077.1\|WP_011857525.1\|5886327_5887704_-\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.55962e-174
NC_009077.1\|WP_011857517.1\|5874876_5876997_-\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.19895e-162
NC_009077.1\|WP_011857515.1\|5871605_5872313_-\|ANTAR-domain-containing-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	4.45038e-09
NC_009077.1\|WP_011562618.1\|5879088_5879580_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	7.04348e-10
NC_009077.1\|WP_011857519.1\|5879583_5880552_-\|dehydrogenase	gnl\|CDD\|187539	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs. This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.36492e-46
NC_009077.1\|WP_011857514.1\|5870879_5871590_-\|ANTAR-domain-containing-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	3.8251e-11
NC_009077.1\|WP_011857516.1\|5872747_5874874_-\|5-oxoprolinase	gnl\|CDD\|376810	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family includes N-methylhydaintoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9 which catalyzes the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to pfam01968.	1.92123e-146
NC_009077.1\|WP_011768422.1\|5888769_5889432_+\|thiocyanate-hydrolase-subunit-gamma	gnl\|CDD\|188402	TIGR03887, Thiocyanate_hydrolase_subunit_gamma, thiocyanate hydrolase, gamma subunit. Members of this family are the gamma subunit of thiocyanate hydrolase. This family is closely related to the nitrile hydratase, alpha subunit (TIGR01323).	1.30952e-135
NC_009077.1\|WP_011857520.1\|5881976_5883191_+\|cupin	gnl\|CDD\|369647	pfam08007, Cupin_4, Cupin superfamily protein. This family contains many hypothetical proteins that belong to the cupin superfamily.	4.66897e-36
NC_009077.1\|WP_011562629.1\|5887866_5888706_+\|nitrile-hydratase-subunit-beta	gnl\|CDD\|376740	pfam02211, NHase_beta, Nitrile hydratase beta subunit. Nitrile hydratases EC:4.2.1.84 are unusual metalloenzymes that catalyze the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit.	1.21835e-71
NC_009077.1\|WP_011857527.1\|5890646_5893205_+\|DUF3516-domain-containing-protein	gnl\|CDD\|378795	pfam12029, DUF3516, Domain of unknown function (DUF3516). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with pfam00270, pfam00271.	0
NC_009077.1\|WP_011857524.1\|5885734_5886325_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.66366e-12
NC_009077.1\|WP_011857523.1\|5884536_5885499_-\|NmrA-family-transcriptional-regulator	gnl\|CDD\|187542	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs. Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.23105e-79
NC_009077.1\|WP_011562616.1\|5877168_5877756_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.06619e-13
NC_009077.1\|WP_011857518.1\|5877721_5878999_-\|Bcr/CflA-family-drug-resistance-efflux-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.97824e-91

>NC_009077.1|WP_011562621.1|5881163_5881682_+|VOC-family-protein
MHLRRVNHVVLSVSDLDRSLTFYRDLLGLLPVAELPGSEHWPAMVFLRSPAPSSNHHDLALIANAEAPAPTSAPRPAGMFHVALEVGTLDELAAVQQTLDSAGVLRGAVDQGMHLSVYTADPDGIEVEIIWRAPDDAWSYDDALTRRPLDVASARERWGGHLATGSAAGAPA
>NC_009077.1|WP_011562620.1|5880614_5881070_-|MarR-family-transcriptional-regulator
MAERAERSGVPTPAELSDDFFAAAKALRAHANATLREQGFTLARGKLLSILQRNGATRVSVLARKLDITTRSVTEAVDALERDGLVRRAPDPADRRAVLVSLTDRGSAVIDAAVQPRRAAMKRTFGALSPSQRTELAELLAILTASTRDPG
>NC_009077.1|WP_011857519.1|5879583_5880552_-|dehydrogenase
MLIGVTGGTGYVGAHCVRALLADGHRVRLLVGPDAEGAPVLEHLAELGDVDVFSGDIRDAMTIDRLLDGCDAVLHGAGVVGTDNRRAALMWEVNAYATEALLTQAVRAGFDPVISVSSYSSLFPPPDGIIGPDTPPANGRSAYAKTKGYADRVARRLQAEGAPVVVTYPSSVVGPAFHTAPGVTERGWAPIVRFGVAPRLRGGMQMIDVRDVAAVHAAAMKPGRGPRRYVCGGELITFDEMIDALKRGSGRRFRRIPVSQAVFRGMSRIGDTLAGIVPLGDGLSYEAALLLTAATPTDDSATLADFGLTWRSPTDAIIASFA
>NC_009077.1|WP_011562618.1|5879088_5879580_+|MarR-family-transcriptional-regulator
MPVVTEPTDQYRDLALVLHDLSWRLARFGPAQVGLEPLPASELAVLRAVMEAPGRSVSEVAAVTNMQSSNVSTAVRSLMERGLLDKHADPRDRRVSLLEPTARALTEREAIENAIARSVSTALTALPGADVEALVAAVPAIRALTTHVAAALTGRADLAQRGA
>NC_009077.1|WP_011857518.1|5877721_5878999_-|Bcr/CflA-family-drug-resistance-efflux-transporter
MSQKIAAVASPPSAVLIAVLALLNAVTPFSIDMYLSAFPEMASEFGVSPSTIQLSLTTFLIGLAVGQLIIGTLSDRYGRRRPLIIGTVACVAVSVACAVAPSIALLIGLRFAQGFCGAAGVVISRAVIADRSRGSRAARLFAVMMLIGVLAPITAPILGGVIVTGFGWRAVFLALAVLNLATLLGVVLTVRESLSEEHRRPGGLKALGVSARTVLGNRHYLGHTLVMAFAAAAMFGYIAASPFVVQNILGFSPAAYSVTFGSCALAVGAGSLISARLVRTVAPRRVLMGGVTALLVVATLMLLNVTAGHVIGWATIALMACFMGSIGFVYANATALALGEVPRAAGTGSAVLGFLQYGMGAVTPPLVGLAGQSSAVPMGLVMFGAATLAALSMFVLTRGHVPFGDEDDAAGDAPVTVSTGGTTSR
>NC_009077.1|WP_011562616.1|5877168_5877756_+|TetR-family-transcriptional-regulator
MATLREAQKQRTRGLLLECGLESFASKGYQATTIDDIAAAAGTTRATFYLHFSSKAQLMRQLIDDVDAILTAADDPPLTEVVASGSRDLLREWLSRKFDQWPAIRPYMLVVHDAEFSEPEVAAVLDKWFDGTVEAMRAGLDAAGRFDAESRRPRCLLAFGQFEFVSRQWFRRGWQVEREVLLETLTDSWCHLLTQ
>NC_009077.1|WP_011857517.1|5874876_5876997_-|hydantoinase/oxoprolinase-family-protein
MAYFVGIDIGGTFTDAVLLDDSGTARLLKTPTTLHDPSEGVNNALALAEKELDLPAGSILRQVDYFGLGTTVATNALIERKGVKTGIITTRGFRDAILMQRATGHWAGRELHEIRHDSQRTQVEPVVPRPLIREVTERIDYKGAVIVALDEDEVRTEVQALIDAGVQAIAVCLLWSFREPSHEQRVAAIIREMAPQIYLTISSELAPVLGEYERTATTALNAYLGPAVQGYMTKLNGSLRDRGLKGSLRILDSGGGVITPERAGDTAVSILTSGPAGGVLASAQLARRIGTPNVLTTDMGGTSFDVGMITDYEPVISPQQQVNGYQVLKPAVKVTAIGAGGGSIARVVNGRLVVGPTSAGSVPGPVCYRRGGTEPTVTDADVVLGIIDPTYFLGGSMGLDKEGAERAMHDRIAKPLGLSVQEAAYGIKAIADHRMADLLDTLTVGQGHDPRDFVVFAYGGAGGAHCHQFGAELGAQSILVPATATVHSAFGAAMSDLHVSAEISDPMHSATWDGAKDAFDPERLTRHFEDLEAEVTKELLGSGAVTERIVVQRFADVRFRMQSKGLSVPVEPGNLDTGAIVRMMDAFRTQFVELYGREALFLGAGVEIVSLRVQAKGELDKPRVTHVVSAAGQSAGTPSSRQVYLGPEHGTTLADVARGTELRSGDRVQGPAVIEHPGTTIFVGPGQTAVIDEVENTVIHTSQKDS
>NC_009077.1|WP_011857516.1|5872747_5874874_-|5-oxoprolinase
MNTLTDTPVDVDVITYEVVRNRLTAIVAQQSAVLKNVSGSPLVTEANDCNTGVYLAGGEVVAMGPHNLFHSGSMETVVNHIIADCTDTVGIEEGDVFITNDPYKGALHMPDVTMIEPVFHEGVRIGWVGTCAHVLDIGGMTPSSWSPAAREVYQEGLILPPTKIISGGRTRHDVWNLILAASRLPANLGLDLKAMIAANNHARQGMLRLVDRYGADVVTTVMTTMLDRSEAQVRERLLAVPDGTTRARTYFDHDGHKSTLARVEVELRKDGDRLVFDYGRTAEQLPGFFNCTMSGLRGGVFSAILPVLAHDIPWNSGVMRAIEVTAPEGTIVNARHPAPCGASTTGATTIVQSTAGSALSTLVSAHDELRGEARAVTTGGLMVFHIAGRNQYGEPYGGAMTEVLAGGAGANVNRNGVDYRGPNEILTGQFNNVEGEEAVFPLLYLNRSANTDGGGAGRHHGGVSVSSSFVLHDTDALHGVMAGHSMSMPNSLGLHGGLPGSTHQVTIVRGGEPVVYTGSPGEIHLAAGDVVDWSFHGGGGWGDPLDADPDEVLADVTAGRISTESASRLYGVVLTAGAVDREETTARRNRERARRRLWAPHRVFGARQLDMVGDARRIGDRLVLTHDGVSAVYACDCGNVIAPADENWKDYAAHSRLSEHDLGPKVRLHPGLRADAYACAGCGTLLAVEIRAHEDEPLRDLELAGQSG
>NC_009077.1|WP_011857515.1|5871605_5872313_-|ANTAR-domain-containing-protein
MAIHEQFSAAIDGQYGTDAADRLCEACVMLLGIDAAAISLVFDGANTGTLGASGTLARSCDELQFTLGEGPCLDTVTHRAPVFVVDLADPDETRWPVYGPAMLDMRIRGVFAMPVLIAGEYVGALDLFRTEPGGLRAGQLAGAIAAAELAGIPLLDLLDTDLRAAVDEPGSDAWAELNALSRTEVSQATGMLVAQLGVDPPEALLRLRAHAYSTGRSASDVARDILERRLRLEAD
>NC_009077.1|WP_011857514.1|5870879_5871590_-|ANTAR-domain-containing-protein
MTDPSRETRVLDAVVTLVDSLLDDFDVVDLLTELTERCADLLDVAAAGFLLVDPMDRLRLLAATTDQAEALELFQLQSDEGPCVDCYRTGLPVSVADLTGAGQRWPRFVPAAREAGIVLGALGLFGSRPGALNEADLLVSQTLAHVACVAILQEHPPTPATVLPQLRSALTSRIVVEQAKGFLREIFDVPVEEAFTLLRTYARSRGEHLTDVARALMGDRLVRPVMIAALTEMVER
>NC_009077.1|WP_011857520.1|5881976_5883191_+|cupin
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLAKEGDVLAKDCYLGPAGFGAEMPDQVDSAKVLTQFSAGATIVMQGLHRLWPPVIDLVRHLVDDLGHPVQANAYITPPSNRGFDPHYDVHDVFVLQTAGEKRWVVHEPVHPHPLPSQPWTQHRDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAVVDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTHASRTRPVAVRPLATLDAAAHADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAPAVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPVPATA
>NC_009077.1|WP_011857521.1|5883187_5884075_+|sucrase-ferredoxin
MTLRKRAPCSDQSLLRGDPMYGTASAGSSWVLLELPGGWGPSAFLQSPAVIDPELGRAIVRRVEGAKMRIAAIRRHGRRTDTPRWRWFIARAVVGGEALYAGEVDNPRDYLDLALDGSDGTLSTDPVVAVCAHGRHDQCCAVRGRGAIAAIADAYPEMAWECSHLGGDRFAATMLILPEGLCYGRVDSTDAAELVRLYLDGRLDNRYLRGRTSLPHAVQAAQYFAREKYGDDRIAGLPTLSAEHTDHRHRVVLGGESGPVEVTVEEGWSEPLLSQCHAKVPGRVKIFSLVSITPA
>NC_009077.1|WP_011857523.1|5884536_5885499_-|NmrA-family-transcriptional-regulator
MTPTNPILVIGATGRHGNTGEHLVTRLREEGRAVRVLARTFGERTDRLADLGAEIVRGDLQDRGSLVAALADVDLAYFTYPIADSVVPAAANYASAVREVGRNPRTVVMSMVPANPNHPSDLGKGQWLAEQVMEWAGLDLLILRVAALFHENLLVLHAPSIRKDAVFRNSFGASVIGWISGRDAADLSVAALLHPQRFDGPVTYPRGSEQFTHADIAALLSEVLGTPVGFTPVCEAAWRDELLELADNDADGVVNPAMAQHISAVGAAISRSGAAIPADPATLRDLIGREPVSLREYLVANREAFEPIGVHTLVAAKAGE
>NC_009077.1|WP_011857524.1|5885734_5886325_+|TetR/AcrR-family-transcriptional-regulator
MLPPVTTAPAGRRGRGARERIIRAASALFYRRGIHATGVDLLTQEAQVSKRTFYQHFPSKVELVETYLREIAENGGSPAERRLDLPGLGPRERLLAIFDASAVKRFRGCPFHNAAVESAGALEGVDEIVREHKRWFADRLAQVSTEAGARDPYLLGEQLLVLFEGATALSTSMGDTAPMVHARSAAAQLIDDACRV
>NC_009077.1|WP_011857525.1|5886327_5887704_-|MFS-transporter
MSDGETLSSSTGPTRAPTSTRRAVLNTIRGSAGNLVEWYDVYVYTVFATYFEAQFFDQDDENSTLYIYAIFAVTFVMRPVGSWFFGRFADRRGRKAALMVSITVMSSCSFVVAVMPTREVIGYWAAVILIAARLLQGFATGGEYGTSATYMSEAATPRRRGFLSSFQYVTLVGGHVLAQFTLLIALSVLDVEAVTAWGWRIGFFIGGIAALVVLWMRRSMDESLSDLHLEAIREGKDREAGSVKALFTTHWRALLLCFLITAGGTVAFYTYTINAPAIVKSTFGSDRALTGTWINLLGLIFLMLLQPLGGLLSDKVGRKPLLISFAVGGILYTYVLLTYLPQTTSPLTAFALTAVGYIILTGYTSVNAIVKAELFPADVRALGVGLGYALANSAFGGTAPLLYQGAKSSDHIGWFIVYVTVVIGVSLSVYVFGLKNKGITALDREQGSAWRVPEPAAR
>NC_009077.1|WP_011562629.1|5887866_5888706_+|nitrile-hydratase-subunit-beta
MSTAADRAAQLNLVARLKSAYPELPDAPTPDLLDHGRITAYLKPVHDVGGEPDAPMKYENKQYEQWEEATYVICEVLAWRGIWLSEERRRIGNVDVGRAQYLGLPYYGRWLLAVARVLVEKHHIGLTELTERMAEVKARYADGLDGGKPEAQPKFEGDGSQVKRNEHHRHAVGKGDPQVYAGLAGQPKFAVGDAVRVRELPVLFYTRTPEYTRGATGVIAKVAYESPAAEDETWDRPDATPEWFYVVRFNQSELWHGYTGTATDTLQTELPERWLEAAS
>NC_009077.1|WP_011768422.1|5888769_5889432_+|thiocyanate-hydrolase-subunit-gamma
MVDEITDFEVLEIALRELCIEKGIFTAEEHRHFTEFAEQIGPTPAARLVARAWLDPDFKDLALREPMTASKEVGVDWMEPTGFGTPSDFTAFEILADTPGLHHVIVCALCSCYPRPILGNSPEWYRTPNYRRRLVRWPRQVLAEFGLYLPDDVEVRVQDSNQKHRFMVMPMRPEGTDGWTEDQLAEIVTRDCLIGVALPKPGVTTNVIVDTRPAVHPITD
>NC_009077.1|WP_011562631.1|5889436_5889787_+|hypothetical-protein
MTAPEPIETLARIVERGQVWPRMAAKYGVENPVPPWKTSLDGLCDALDHGACRDTNVPTFKERRDEEDSLSATVYADLPYPENQLVSLAHSLLARGVIDEAELRQRLSSIRARLEA
>NC_009077.1|WP_011857526.1|5889805_5890585_+|hypothetical-protein
MIRFVHLLTLLGVVAVPAAGWFAAQWSGGTTLAVYWVENVAVCAFIALRILVHQKRSPRRGHFRYEAPNTDRRAARSSFLTGFAVTGFAFCAAHGVFLGVILFLLDRNGESGFAAIDWRSVAYGCLGVVVLLAVDFVVDLPGLHRMPFRHLERTADQGVGRVLVVHLTLIFGMVGVALTGAPSAFFGVFVFLKTMFAISTALPQWEPEVAPRWFSRLMNRVPNVHPGQTFEQFWADDRAAERARREKNEQPWTAARRRG
>NC_009077.1|WP_011857527.1|5890646_5893205_+|DUF3516-domain-containing-protein
MTTPLLDDPSDLSTLRAKGEDPDELFASFAAWAEAGGTALYPAQEEALIELVSGANVILATPTGSGKSLVATGAQYAALAGNLRSYYTAPIKALVSEKFFALCGVFGAENVGMLTGDAAVNAAAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPHAQFLLMSATLGDVTFLREDLTRRTGRPTALVAHAERPVPLFYSYATTPMHETIGDLLETRQAPIYVVHFTQASALERAQALMSINVCTKAEKAAIADLIGAFRFSTAFGSTLSRLVRHGIGVHHAGMLPKYRRLVEQLAQAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRTRLLNAREFHQIAGRAGRAGYDTAGTVVVQAPDHEVENLKQFAKVADDPKKRRKLVRRKVPEGMVPWSESTMTRLVEAVPEPLHSNMRVSTAMILDVVARASEATGEGSRTGDPFVAMRRLLTDNHEPRKRQLQLIREAVGIARSLLQAGIIERVDTPDGRRYRLTVDLPRDFALNQPLSTFALAAIEVLDASAETYALDVVSVIEATLEDPRQILAAQLKKARGEAVAAMKAEGIEYDERIELLDDVTYPKPLEELLEHTFEVYLQTNPWAADGRLSPKSVVREMWERAFTFREYVSVYGLTRSEGAVLRYLSDAYKALRSGVPAAARTDEVTDIVEWLGELVRQVDSSLLDEWEQLTSPDRPLDAPVAVPARPRPLTGNERAFTAMVRNALFRRVELFARRRWAELGELDAASGWTAQDWAQVGDEYFAEHDDVGTGADARGPALLIFDREPGVWRVRQILDDPAGDHDWGFDVEVDLEASDEEGTAVVRLVDAGHLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009077_2	2.1\|4951837\|33\|NC_009077\|CRISPRCasFinder	4951837-4951869	33	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	348645-348677	7	0.788

1. spacer 2.1|4951837|33|NC_009077|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 7, identity: 0.788

cccagcccgtcgtgccgagcgcccagcagaccg	CRISPR spacer
cgcgccccggcgtgccgcgcgcccagcagcgcg	Protospacer
* *. **** ******* ***********  **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1892661 : 1900387

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011855252.1\|1892661_1893519_+	short chain dehydrogenase	W8CYX9	Bacillus_phage	1.3e-06	38.5
WP_011855253.1\|1893526_1894699_-	ATP-binding protein	A0A077SLJ9	Escherichia_phage	4.2e-56	35.7
WP_011559212.1\|1894708_1895776_-	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.0e-13	26.5
WP_011559213.1\|1895779_1896382_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011559214.1\|1896477_1897044_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.2e-08	33.1
WP_011559215.1\|1897509_1897761_+	NrdH-redoxin	V5UN81	Mycobacterium_phage	1.6e-21	64.5
WP_011559216.1\|1897793_1898252_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_082947857.1\|1898218_1900387_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-205	51.0

DBSCAN-SWA_2

2313268 : 2357956

Mycobacterium_phage(14.29%)

integrase,transposase

attL 2313059:2313082|attR 2369680:2369703

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2313059:2313082	attL	NA	NA	NA	NA
WP_011855447.1\|2313268_2314435_+\|integrase	site-specific integrase	A0A076YKK3	Mycobacterium_phage	2.1e-55	36.6
WP_011855448.1\|2314492_2315443_+	hypothetical protein	NA	NA	NA	NA
WP_011855449.1\|2315497_2316265_-	hypothetical protein	NA	NA	NA	NA
WP_085976251.1\|2319274_2320536_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.3e-84	60.3
WP_041925035.1\|2320492_2320963_-	hypothetical protein	NA	NA	NA	NA
WP_011855454.1\|2320959_2321856_-	DUF4357 domain-containing protein	NA	NA	NA	NA
WP_011855455.1\|2321855_2323211_-	restriction modification system DNA specificity subunit	NA	NA	NA	NA
WP_083776349.1\|2323207_2324353_-	SAM-dependent methyltransferase	A0A220A2U5	Liberibacter_phage	3.0e-06	29.0
WP_085976247.1\|2324622_2325851_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011768155.1\|2325925_2327068_-	epoxide hydrolase	NA	NA	NA	NA
WP_011855458.1\|2327427_2327925_-	hypothetical protein	NA	NA	NA	NA
WP_011855459.1\|2327918_2329100_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_011855460.1\|2329096_2330182_-	hypothetical protein	NA	NA	NA	NA
WP_011559050.1\|2330196_2331222_-	zinc-binding alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	3.1e-15	29.5
WP_041925036.1\|2331279_2332107_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
WP_011855462.1\|2332126_2333503_-	ribosomal subunit interface protein	NA	NA	NA	NA
WP_011855463.1\|2333565_2334075_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_011855464.1\|2334632_2336093_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_011559042.1\|2336288_2336579_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_011559041.1\|2336575_2338348_-	succinate dehydrogenase/fumarate reductase flavoprotein subunit	NA	NA	NA	NA
WP_085976237.1\|2338449_2339641_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-46	37.4
WP_011777800.1\|2339771_2340281_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_085975380.1\|2341342_2342571_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011855466.1\|2342741_2343044_+	hypothetical protein	NA	NA	NA	NA
WP_011855467.1\|2343122_2345873_-	ATP-binding protein	NA	NA	NA	NA
WP_011855468.1\|2345950_2348740_-	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	9.4e-147	39.1
WP_011855469.1\|2348736_2352039_-	helicase	A0A2K5B2B9	Erysipelothrix_phage	2.6e-39	28.1
WP_011855470.1\|2352126_2352540_-	hypothetical protein	NA	NA	NA	NA
WP_011855471.1\|2352536_2354681_-	hypothetical protein	NA	NA	NA	NA
WP_011855472.1\|2354677_2356498_-	hypothetical protein	NA	NA	NA	NA
WP_011855473.1\|2356501_2357956_-\|integrase	integrase	NA	NA	NA	NA
2369680:2369703	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4575375 : 4583561

Gordonia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011856683.1\|4575375_4576611_+	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	6.5e-68	51.5
WP_011561486.1\|4576597_4576810_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_011856684.1\|4576873_4577989_+	steroid Delta-isomerase	Q76TT0	Molluscum_contagiosum_virus	4.1e-29	33.3
WP_041925139.1\|4577999_4578320_-	hypothetical protein	NA	NA	NA	NA
WP_011856686.1\|4578394_4579111_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	2.4e-14	44.4
WP_011856687.1\|4579195_4579465_+	hypothetical protein	NA	NA	NA	NA
WP_041925140.1\|4579424_4580969_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	4.7e-156	51.7
WP_011856689.1\|4580968_4581877_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_011856690.1\|4581869_4582745_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	1.3e-14	28.9
WP_011856691.1\|4582790_4583561_+	NAD(P)-dependent oxidoreductase	A0A0M4JSW6	Mollivirus	2.1e-11	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009077

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection