CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_011080	Salmonella enterica subsp. enterica serovar Newport str. SL254, complete sequence	2 crisprs	DEDDh,WYL,DinG,cas3,csa3,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	41	9
NC_009140	Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSN254, complete sequence	0 crisprs	DEDDh	0	1
NC_011079	Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSL254_3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011080_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011080_1

3054859-3056473

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NC_011080_1

>merge|NC_011080|1|3054859-3056473|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGATGAGCAACACGCCCGCACTGGCGTAACTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGGCTGGAGATATGGGAGTACCTTTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACATATCCAGCCTGCGATAGAGATAGTTTTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGTGGCAAAATATTGTCAGCGGGATTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACCAATCTGTAAATATTTTTCATCTGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCGCTCTCGATCGTCGCGGCATACATCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGATTGCACAGGGGGTGAGTATGGAACAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACACAATACTGACGTGTTTCACGCTGCTGCCGTCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAACAGTAATTGCAAAATCCTGTTGTTTAATCGGTTTATCCCCGCTGGCGCGGGGAACACGGGATCAGCACCGACAACCTAAAACCACTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGTGTCGGAATATGCGGGCTGATTTTCGTCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTAATTAATGAGAATTAGACGCAACATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACAATTACGGTCCCTATTCCCTCAGTCCTCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCACGGCGTTTGCCCTCGTCGGTTATTGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGATTGTCAAAATCAAAAAACAGGCCGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGAGCGAAGGTGCAACATTATCACCATATTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACAATGTTTCCCGCACCCAAATGCGATCGCCAGGCGGTTTATCCCCGCTGGCGCGGGGAACACAATGATAAATTATCCGTTACCGCAATAACAATCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGCGTAGTTGATCACGATTTCCGGGATAATCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTTTCTTCGGTGCCCAACCGCAGCCTAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTTATAGAGTTGACTCAAATTCATTTTTATTCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAGCCGGGTCTGTATCGAATACCAGCCCCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTAAAATTGGCATCATAGATGGTTTGATAGTCCCGATTTATCCCCGCTGGCGCGGGGAACACATGCAATGGGGAATAAGTGGCGGGTAAATCAACGGTTTATCCCCGCTGGCGCGGGGAACACCCGTCGCCGCACGCAAACAATCCGGGCGCCCACGGTTTATCCCCGCTGGCGCGGGGAACACTCAATAACCCCTTTTAAATACTGCCGTTCCAGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|1|1|3054859-3056473|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GATGAGCAACACGCCCGCACTGGCGTAACTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGGCTGGAGATATGGGAGTACCTTTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCCAGCCTGCGATAGAGATAGTTTTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAAAATATTGTCAGCGGGATTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACCAATCTGTAAATATTTTTCATCTGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTCTCGATCGTCGCGGCATACATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGCACAGGGGGTGAGTATGGAACAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATACTGACGTGTTTCACGCTGCTGCCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAACAGTAATTGCAAAATCCTGTTGTTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGATCAGCACCGACAACCTAAAACCACTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTGTCGGAATATGCGGGCTGATTTTCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTAATTAATGAGAATTAGACGCAACATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACAATTACGGTCCCTATTCCCTCAGTCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCACGGCGTTTGCCCTCGTCGGTTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGTCAAAATCAAAAAACAGGCCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGCGAAGGTGCAACATTATCACCATATTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGTTTCCCGCACCCAAATGCGATCGCCAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGATAAATTATCCGTTACCGCAATAACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGCGTAGTTGATCACGATTTCCGGGATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTCTTCGGTGCCCAACCGCAGCCTAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTATAGAGTTGACTCAAATTCATTTTTATTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCCGGGTCTGTATCGAATACCAGCCCCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAATTGGCATCATAGATGGTTTGATAGTCC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGCAATGGGGAATAAGTGGCGGGTAAATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTCGCCGCACGCAAACAATCCGGGCGCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAATAACCCCTTTTAAATACTGCCGTTCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|1|1|3054859-3056473|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GATGAGCAACACGCCCGCACTGGCGTAACTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGGCTGGAGATATGGGAGTACCTTTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATATCCAGCCTGCGATAGAGATAGTTTTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTGGCAAAATATTGTCAGCGGGATTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACCAATCTGTAAATATTTTTCATCTGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCGCTCTCGATCGTCGCGGCATACATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTGCACAGGGGGTGAGTATGGAACAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATACTGACGTGTTTCACGCTGCTGCCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAACAGTAATTGCAAAATCCTGTTGTTTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGATCAGCACCGACAACCTAAAACCACTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTGTCGGAATATGCGGGCTGATTTTCGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTAATTAATGAGAATTAGACGCAACATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACAATTACGGTCCCTATTCCCTCAGTCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCACGGCGTTTGCCCTCGTCGGTTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGTCAAAATCAAAAAACAGGCCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGCGAAGGTGCAACATTATCACCATATTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGTTTCCCGCACCCAAATGCGATCGCCAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGATAAATTATCCGTTACCGCAATAACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGCGTAGTTGATCACGATTTCCGGGATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTTCTTCGGTGCCCAACCGCAGCCTAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTATAGAGTTGACTCAAATTCATTTTTATTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCCGGGTCTGTATCGAATACCAGCCCCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAATTGGCATCATAGATGGTTTGATAGTCC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGCAATGGGGAATAAGTGGCGGGTAAATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTCGCCGCACGCAAACAATCCGGGCGCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAATAACCCCTTTTAAATACTGCCGTTCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|1|1|3054861-3056473|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACGA	TGAGCAACACGCCCGCACTGGCGTAACTTACG
GTTTATCCCCGCTGGCGCGGGGAACACCG	TTGGCTGGAGATATGGGAGTACCTTTGGAACG
GTTTATCCCCGCTGGCGCGGGGAACACAT	ATCCAGCCTGCGATAGAGATAGTTTTCCGGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GGTGGCAAAATATTGTCAGCGGGATTTTTTCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TACCAATCTGTAAATATTTTTCATCTGCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	TTCGCTCTCGATCGTCGCGGCATACATCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	TTGCACAGGGGGTGAGTATGGAACAGCTGACG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TACTGACGTGTTTCACGCTGCTGCCGTCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACCC	AACAGTAATTGCAAAATCCTGTTGTTTAATCG
GTTTATCCCCGCTGGCGCGGGGAACACGG	GATCAGCACCGACAACCTAAAACCACTGTTCG
GTTTATCCCCGCTGGCGCGGGGAACACTG	TGTCGGAATATGCGGGCTGATTTTCGTCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TTAATTAATGAGAATTAGACGCAACATTGTCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TACAATTACGGTCCCTATTCCCTCAGTCCTCG
GTTTATCCCCGCTGGCGCGGGGAACACCG	CGCACGGCGTTTGCCCTCGTCGGTTATTGGCG
GTTTATCCCCGCTGGCGCGGGGAACACCT	GATTGTCAAAATCAAAAAACAGGCCGAGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GCGAAGGTGCAACATTATCACCATATTCGGCG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TGTTTCCCGCACCCAAATGCGATCGCCAGGCG
GTTTATCCCCGCTGGCGCGGGGAACACAA	TGATAAATTATCCGTTACCGCAATAACAATCG
GTTTATCCCCGCTGGCGCGGGGAACACCC	TGCGTAGTTGATCACGATTTCCGGGATAATCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	TTTTCTTCGGTGCCCAACCGCAGCCTAACGCG
GTTTATCCCCGCTGGCGCGGGGAACACTT	ATAGAGTTGACTCAAATTCATTTTTATTCCCG
GTTTATCCCCGCTGGCGCGGGGAACACTA	GCCGGGTCTGTATCGAATACCAGCCCCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACTA	AAATTGGCATCATAGATGGTTTGATAGTCCCG
ATTTATCCCCGCTGGCGCGGGGAACACAT	GCAATGGGGAATAAGTGGCGGGTAAATCAACG
GTTTATCCCCGCTGGCGCGGGGAACACCC	GTCGCCGCACGCAAACAATCCGGGCGCCCACG
GTTTATCCCCGCTGGCGCGGGGAACACTC	AATAACCCCTTTTAAATACTGCCGTTCCAGCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011080.1\|WP_001173663.1\|3050597_3051203_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011080.1\|WP_000062285.1\|3056557_3056851_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011080.1\|WP_001537530.1\|3050223_3050547_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_011080.1\|WP_000281416.1\|3057770_3058475_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NC_011080.1\|WP_000134243.1\|3047467_3048517_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011080.1\|WP_001670772.1\|3065885_3066839_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011080.1\|WP_001221538.1\|3046725_3047487_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011080.1\|WP_000517480.1\|3049721_3050033_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011080.1\|WP_001092268.1\|3051189_3052629_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011080.1\|WP_000666422.1\|3058474_3059200_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011080.1\|WP_000741641.1\|3048992_3049703_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_011080.1\|WP_000118676.1\|3056853_3057771_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011080.1\|WP_001219244.1\|3048513_3048993_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011080.1\|WP_000935104.1\|3060290_3060893_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_011080.1\|WP_000366318.1\|3060909_3062445_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011080.1\|WP_000080403.1\|3067051_3067786_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011080.1\|WP_000372384.1\|3052638_3053547_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011080.1\|WP_000490481.1\|3053797_3054844_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011080.1\|WP_001670238.1\|3059209_3060268_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011080.1\|WP_001290654.1\|3067861_3069574_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
NC_011080.1\|WP_001173663.1\|3050597_3051203_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_011080.1\|WP_000062285.1\|3056557_3056851_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
NC_011080.1\|WP_001537530.1\|3050223_3050547_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NC_011080.1\|WP_000281416.1\|3057770_3058475_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
NC_011080.1\|WP_000134243.1\|3047467_3048517_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011080.1\|WP_001670772.1\|3065885_3066839_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011080.1\|WP_001221538.1\|3046725_3047487_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_011080.1\|WP_000517480.1\|3049721_3050033_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_011080.1\|WP_001092268.1\|3051189_3052629_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011080.1\|WP_000666422.1\|3058474_3059200_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NC_011080.1\|WP_000741641.1\|3048992_3049703_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
NC_011080.1\|WP_000118676.1\|3056853_3057771_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
NC_011080.1\|WP_001219244.1\|3048513_3048993_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NC_011080.1\|WP_000935104.1\|3060290_3060893_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NC_011080.1\|WP_000366318.1\|3060909_3062445_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011080.1\|WP_000080403.1\|3067051_3067786_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NC_011080.1\|WP_000372384.1\|3052638_3053547_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011080.1\|WP_000490481.1\|3053797_3054844_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011080.1\|WP_001670238.1\|3059209_3060268_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NC_011080.1\|WP_001290654.1\|3067861_3069574_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>NC_011080.1|WP_000490481.1|3053797_3054844_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_011080.1|WP_000372384.1|3052638_3053547_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_011080.1|WP_001092268.1|3051189_3052629_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_011080.1|WP_001173663.1|3050597_3051203_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_011080.1|WP_001537530.1|3050223_3050547_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_011080.1|WP_000517480.1|3049721_3050033_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_011080.1|WP_000741641.1|3048992_3049703_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_011080.1|WP_001219244.1|3048513_3048993_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_011080.1|WP_000134243.1|3047467_3048517_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_011080.1|WP_001221538.1|3046725_3047487_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_011080.1|WP_000062285.1|3056557_3056851_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NC_011080.1|WP_000118676.1|3056853_3057771_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NC_011080.1|WP_000281416.1|3057770_3058475_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NC_011080.1|WP_000666422.1|3058474_3059200_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NC_011080.1|WP_001670238.1|3059209_3060268_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NC_011080.1|WP_000935104.1|3060290_3060893_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NC_011080.1|WP_000366318.1|3060909_3062445_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NC_011080.1|WP_001670772.1|3065885_3066839_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NC_011080.1|WP_000080403.1|3067051_3067786_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011080.1|WP_001290654.1|3067861_3069574_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NC_011080_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011080_2

3073142-3074328

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
NCGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

19 spacers

cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_011080_2

>merge|NC_011080|2|3073142-3074328|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACACGGCAACGGATGCGACCGCCAGCGCGATCCCCGGTTTATCCCCGCTGCGCGGGGAACACTTGATGAAAGTTCATCTAATAATGATTGTGCTGGGTTTATCCCCGCTGGCGCAGGGAACACGAACCGCTTTTATTTTTAGACATAGAGCACCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCCACCCGGACAACAAAATGAATCCCGATGATCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAAACTGCTTGCGGTAAGAAACTGTTGCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCACTCCCGACCGTTGAGGTGACAAAACCCTCGGTTTATCCCCGCTGGCGCGGGGAACACAACCCTTACGGTTATATGAAAGAAGATTTTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGGCATATCAGGAGTTGGAGCAACCAGCGAGACGGTTTATCCCCGCTGGCGCGGGGAACACTGACCTGAAGAAATAACATTGACTCCAAACTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTTCTCTACATTTAGCTATAGACGTTAGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCCTGACTTTATCAAGCAGTGCATACTGACCGGTTTATCCCCGCTGGCGCGGGGAACACAAACTCTGGGCGCTCGAATGGCTGTCCTATTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCGGTGTAAATTTTTACGTTTTTCATATCTCGGTTTATCCCCGCTGGCGCGGGGAACACGAGACTTTTCACACTGATAATGTTGTTATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTGTCGCGGTAGTATTTAGTCGAAAGCATGACGGTTTATCCCCGCTGGCGCTGGGAACACACGGCCTGATTTAGAGTTAAACATGGTCACGCCGGTTTATCCCCGCTGGCGCGGGGAACACTACGGGTTGTACCATGCCACTGGCGTTTTGTGCGGTTTATCCCCGCTGGCGCGGGGAACACATGGCGTGTCTCGATTGCGCGCTGCCGCACTGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCCCATTTAGCGAGTTCTTTTGCCGCCAGCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|2|2|3073142-3074328|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCC
CCGGTTTATCCCCGCTGCGCGGGGAACAC	TTGATGAAAGTTCATCTAATAATGATTGTGCT
GGGTTTATCCCCGCTGGCGCAGGGAACAC	GAACCGCTTTTATTTTTAGACATAGAGCACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACCCGGACAACAAAATGAATCCCGATGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAAACTGCTTGCGGTAAGAAACTGTTGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCACTCCCGACCGTTGAGGTGACAAAACCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCTTACGGTTATATGAAAGAAGATTTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGCATATCAGGAGTTGGAGCAACCAGCGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCTGAAGAAATAACATTGACTCCAAACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTCTCTACATTTAGCTATAGACGTTAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCTGACTTTATCAAGCAGTGCATACTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAACTCTGGGCGCTCGAATGGCTGTCCTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCGGTGTAAATTTTTACGTTTTTCATATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGACTTTTCACACTGATAATGTTGTTATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGTCGCGGTAGTATTTAGTCGAAAGCATGA
CGGTTTATCCCCGCTGGCGCTGGGAACAC	ACGGCCTGATTTAGAGTTAAACATGGTCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGGGTTGTACCATGCCACTGGCGTTTTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGCGTGTCTCGATTGCGCGCTGCCGCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCATTTAGCGAGTTCTTTTGCCGCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|2|2|3073142-3074328|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCC
CCGGTTTATCCCCGCTGCGCGGGGAACAC	TTGATGAAAGTTCATCTAATAATGATTGTGCT
GGGTTTATCCCCGCTGGCGCAGGGAACAC	GAACCGCTTTTATTTTTAGACATAGAGCACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCACCCGGACAACAAAATGAATCCCGATGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAAACTGCTTGCGGTAAGAAACTGTTGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCACTCCCGACCGTTGAGGTGACAAAACCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCTTACGGTTATATGAAAGAAGATTTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGCATATCAGGAGTTGGAGCAACCAGCGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCTGAAGAAATAACATTGACTCCAAACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTCTCTACATTTAGCTATAGACGTTAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCTGACTTTATCAAGCAGTGCATACTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAACTCTGGGCGCTCGAATGGCTGTCCTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCGGTGTAAATTTTTACGTTTTTCATATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGACTTTTCACACTGATAATGTTGTTATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGTCGCGGTAGTATTTAGTCGAAAGCATGA
CGGTTTATCCCCGCTGGCGCTGGGAACAC	ACGGCCTGATTTAGAGTTAAACATGGTCACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGGGTTGTACCATGCCACTGGCGTTTTGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGCGTGTCTCGATTGCGCGCTGCCGCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCATTTAGCGAGTTCTTTTGCCGCCAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011080|2|2|3073203-3074328|PILER-CR
CGGTTTATCCCCGCTGCGCGGGGAACACT	TGATGAAAGTTCATCTAATAATGATTGTGCTG
GGTTTATCCCCGCTGGCGCAGGGAACACG	AACCGCTTTTATTTTTAGACATAGAGCACCGC
GGTTTATCCCCGCTGGCGCGGGGAACACG	CCACCCGGACAACAAAATGAATCCCGATGATC
GGTTTATCCCCGCTGGCGCGGGGAACACT	TCAAACTGCTTGCGGTAAGAAACTGTTGCACC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GCACTCCCGACCGTTGAGGTGACAAAACCCTC
GGTTTATCCCCGCTGGCGCGGGGAACACA	ACCCTTACGGTTATATGAAAGAAGATTTTTAC
GGTTTATCCCCGCTGGCGCGGGGAACACC	GGCATATCAGGAGTTGGAGCAACCAGCGAGAC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GACCTGAAGAAATAACATTGACTCCAAACTGC
GGTTTATCCCCGCTGGCGCGGGGAACACG	TTTTCTCTACATTTAGCTATAGACGTTAGTTC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GGCCTGACTTTATCAAGCAGTGCATACTGACC
GGTTTATCCCCGCTGGCGCGGGGAACACA	AACTCTGGGCGCTCGAATGGCTGTCCTATTGC
GGTTTATCCCCGCTGGCGCGGGGAACACT	GGCGGTGTAAATTTTTACGTTTTTCATATCTC
GGTTTATCCCCGCTGGCGCGGGGAACACG	AGACTTTTCACACTGATAATGTTGTTATTTTC
GGTTTATCCCCGCTGGCGCGGGGAACACG	TTGTCGCGGTAGTATTTAGTCGAAAGCATGAC
GGTTTATCCCCGCTGGCGCTGGGAACACA	CGGCCTGATTTAGAGTTAAACATGGTCACGCC
GGTTTATCCCCGCTGGCGCGGGGAACACT	ACGGGTTGTACCATGCCACTGGCGTTTTGTGC
GGTTTATCCCCGCTGGCGCGGGGAACACA	TGGCGTGTCTCGATTGCGCGCTGCCGCACTGC
GGTTTATCCCCGCTGGCGCGGGGAACACT	TCCCATTTAGCGAGTTCTTTTGCCGCCAGCAC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011080.1\|WP_000366318.1\|3060909_3062445_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011080.1\|WP_000210923.1\|3069573_3071373_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_011080.1\|WP_000832396.1\|3084779_3085250_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_011080.1\|WP_000080403.1\|3067051_3067786_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011080.1\|WP_001208002.1\|3072246_3073044_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_011080.1\|WP_000842512.1\|3080086_3080674_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NC_011080.1\|WP_001670772.1\|3065885_3066839_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011080.1\|WP_000210858.1\|3076812_3078450_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_011080.1\|WP_000666422.1\|3058474_3059200_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011080.1\|WP_001290654.1\|3067861_3069574_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011080.1\|WP_000210451.1\|3078677_3079478_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011080.1\|WP_000935104.1\|3060290_3060893_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_011080.1\|WP_000981807.1\|3080753_3083453_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NC_011080.1\|WP_000108313.1\|3071796_3072159_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_011080.1\|WP_000178270.1\|3084258_3084765_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_011080.1\|WP_001079642.1\|3085246_3085783_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_011080.1\|WP_000036734.1\|3075431_3076730_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011080.1\|WP_001670238.1\|3059209_3060268_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011080.1\|WP_001199961.1\|3074624_3075296_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011080.1\|WP_001044459.1\|3083465_3084239_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177

Protein	Function_ID	Function_description	E-value
NC_011080.1\|WP_000366318.1\|3060909_3062445_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011080.1\|WP_000210923.1\|3069573_3071373_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_011080.1\|WP_000832396.1\|3084779_3085250_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NC_011080.1\|WP_000080403.1\|3067051_3067786_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NC_011080.1\|WP_001208002.1\|3072246_3073044_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NC_011080.1\|WP_000842512.1\|3080086_3080674_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NC_011080.1\|WP_001670772.1\|3065885_3066839_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011080.1\|WP_000210858.1\|3076812_3078450_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011080.1\|WP_000666422.1\|3058474_3059200_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NC_011080.1\|WP_001290654.1\|3067861_3069574_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011080.1\|WP_000210451.1\|3078677_3079478_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_011080.1\|WP_000935104.1\|3060290_3060893_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NC_011080.1\|WP_000981807.1\|3080753_3083453_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NC_011080.1\|WP_000108313.1\|3071796_3072159_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_011080.1\|WP_000178270.1\|3084258_3084765_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NC_011080.1\|WP_001079642.1\|3085246_3085783_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
NC_011080.1\|WP_000036734.1\|3075431_3076730_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011080.1\|WP_001670238.1\|3059209_3060268_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NC_011080.1\|WP_001199961.1\|3074624_3075296_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_011080.1\|WP_001044459.1\|3083465_3084239_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0

>NC_011080.1|WP_001208002.1|3072246_3073044_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_011080.1|WP_000108313.1|3071796_3072159_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_011080.1|WP_000210923.1|3069573_3071373_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_011080.1|WP_001290654.1|3067861_3069574_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_011080.1|WP_000080403.1|3067051_3067786_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011080.1|WP_001670772.1|3065885_3066839_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NC_011080.1|WP_000366318.1|3060909_3062445_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NC_011080.1|WP_000935104.1|3060290_3060893_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NC_011080.1|WP_001670238.1|3059209_3060268_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NC_011080.1|WP_000666422.1|3058474_3059200_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NC_011080.1|WP_001199961.1|3074624_3075296_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011080.1|WP_000036734.1|3075431_3076730_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011080.1|WP_000210858.1|3076812_3078450_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDAQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_011080.1|WP_000210451.1|3078677_3079478_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_011080.1|WP_000842512.1|3080086_3080674_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_011080.1|WP_000981807.1|3080753_3083453_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NC_011080.1|WP_001044459.1|3083465_3084239_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_011080.1|WP_000178270.1|3084258_3084765_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NC_011080.1|WP_000832396.1|3084779_3085250_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_011080.1|WP_001079642.1|3085246_3085783_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011080_1	1.1\|3054888\|32\|NC_011080\|CRISPRCasFinder,CRT	3054888-3054919	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NC_011080_1	1.1\|3054888\|32\|NC_011080\|CRISPRCasFinder,CRT	3054888-3054919	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NC_011080_1	1.1\|3054888\|32\|NC_011080\|CRISPRCasFinder,CRT	3054888-3054919	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NC_011080_1	1.27\|3054890\|32\|NC_011080\|PILER-CR	3054890-3054921	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NC_011080_1	1.27\|3054890\|32\|NC_011080\|PILER-CR	3054890-3054921	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NC_011080_1	1.27\|3054890\|32\|NC_011080\|PILER-CR	3054890-3054921	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NC_011080_1	1.17\|3055864\|32\|NC_011080\|CRISPRCasFinder,CRT	3055864-3055895	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NC_011080_1	1.43\|3055866\|32\|NC_011080\|PILER-CR	3055866-3055897	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90822	5	0.839
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271430	5	0.839
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112053-112083	5	0.839
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224972-225002	5	0.839
NC_011080_1	1.17\|3055864\|32\|NC_011080\|CRISPRCasFinder,CRT	3055864-3055895	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NC_011080_1	1.43\|3055866\|32\|NC_011080\|PILER-CR	3055866-3055897	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654403-654433	6	0.806
NC_011080_2	2.7\|3073536\|32\|NC_011080\|CRISPRCasFinder,CRT	3073536-3073567	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NC_011080_2	2.25\|3073537\|32\|NC_011080\|PILER-CR	3073537-3073568	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NC_011080_1	1.6\|3055193\|32\|NC_011080\|CRISPRCasFinder,CRT	3055193-3055224	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NC_011080_1	1.6\|3055193\|32\|NC_011080\|CRISPRCasFinder,CRT	3055193-3055224	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NC_011080_1	1.32\|3055195\|32\|NC_011080\|PILER-CR	3055195-3055226	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NC_011080_1	1.32\|3055195\|32\|NC_011080\|PILER-CR	3055195-3055226	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NC_011080_2	2.1\|3073171\|31\|NC_011080\|CRISPRCasFinder,CRT	3073171-3073201	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052325	7	0.774
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NC_011080_2	2.18\|3074207\|32\|NC_011080\|CRISPRCasFinder,CRT	3074207-3074238	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NC_011080_2	2.36\|3074208\|32\|NC_011080\|PILER-CR	3074208-3074239	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NC_011080_1	1.6\|3055193\|32\|NC_011080\|CRISPRCasFinder,CRT	3055193-3055224	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NC_011080_1	1.6\|3055193\|32\|NC_011080\|CRISPRCasFinder,CRT	3055193-3055224	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NC_011080_1	1.32\|3055195\|32\|NC_011080\|PILER-CR	3055195-3055226	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NC_011080_1	1.32\|3055195\|32\|NC_011080\|PILER-CR	3055195-3055226	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NC_011080_2	2.4\|3073353\|32\|NC_011080\|CRISPRCasFinder,CRT	3073353-3073384	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NC_011080_2	2.5\|3073414\|32\|NC_011080\|CRISPRCasFinder,CRT	3073414-3073445	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NC_011080_2	2.12\|3073841\|32\|NC_011080\|CRISPRCasFinder,CRT	3073841-3073872	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NC_011080_2	2.22\|3073354\|32\|NC_011080\|PILER-CR	3073354-3073385	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NC_011080_2	2.23\|3073415\|32\|NC_011080\|PILER-CR	3073415-3073446	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NC_011080_2	2.30\|3073842\|32\|NC_011080\|PILER-CR	3073842-3073873	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NC_011080_1	1.1\|3054888\|32\|NC_011080\|CRISPRCasFinder,CRT	3054888-3054919	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NC_011080_1	1.15\|3055742\|32\|NC_011080\|CRISPRCasFinder,CRT	3055742-3055773	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NC_011080_1	1.21\|3056108\|32\|NC_011080\|CRISPRCasFinder,CRT	3056108-3056139	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NC_011080_1	1.25\|3056352\|32\|NC_011080\|CRISPRCasFinder,CRT	3056352-3056383	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NC_011080_1	1.25\|3056352\|32\|NC_011080\|CRISPRCasFinder,CRT	3056352-3056383	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NC_011080_1	1.25\|3056352\|32\|NC_011080\|CRISPRCasFinder,CRT	3056352-3056383	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NC_011080_1	1.25\|3056352\|32\|NC_011080\|CRISPRCasFinder,CRT	3056352-3056383	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NC_011080_1	1.26\|3056413\|32\|NC_011080\|CRISPRCasFinder,CRT	3056413-3056444	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NC_011080_1	1.27\|3054890\|32\|NC_011080\|PILER-CR	3054890-3054921	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NC_011080_1	1.41\|3055744\|32\|NC_011080\|PILER-CR	3055744-3055775	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NC_011080_1	1.47\|3056110\|32\|NC_011080\|PILER-CR	3056110-3056141	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NC_011080_1	1.51\|3056354\|32\|NC_011080\|PILER-CR	3056354-3056385	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NC_011080_1	1.51\|3056354\|32\|NC_011080\|PILER-CR	3056354-3056385	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NC_011080_1	1.51\|3056354\|32\|NC_011080\|PILER-CR	3056354-3056385	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NC_011080_1	1.51\|3056354\|32\|NC_011080\|PILER-CR	3056354-3056385	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NC_011080_1	1.52\|3056415\|32\|NC_011080\|PILER-CR	3056415-3056446	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NC_011080_2	2.7\|3073536\|32\|NC_011080\|CRISPRCasFinder,CRT	3073536-3073567	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NC_011080_2	2.7\|3073536\|32\|NC_011080\|CRISPRCasFinder,CRT	3073536-3073567	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NC_011080_2	2.7\|3073536\|32\|NC_011080\|CRISPRCasFinder,CRT	3073536-3073567	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NC_011080_2	2.10\|3073719\|32\|NC_011080\|CRISPRCasFinder,CRT	3073719-3073750	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NC_011080_2	2.25\|3073537\|32\|NC_011080\|PILER-CR	3073537-3073568	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NC_011080_2	2.25\|3073537\|32\|NC_011080\|PILER-CR	3073537-3073568	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NC_011080_2	2.25\|3073537\|32\|NC_011080\|PILER-CR	3073537-3073568	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NC_011080_2	2.28\|3073720\|32\|NC_011080\|PILER-CR	3073720-3073751	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NC_011080_1	1.6\|3055193\|32\|NC_011080\|CRISPRCasFinder,CRT	3055193-3055224	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688
NC_011080_1	1.14\|3055681\|32\|NC_011080\|CRISPRCasFinder,CRT	3055681-3055712	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NC_011080_1	1.14\|3055681\|32\|NC_011080\|CRISPRCasFinder,CRT	3055681-3055712	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NC_011080_1	1.16\|3055803\|32\|NC_011080\|CRISPRCasFinder,CRT	3055803-3055834	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NC_011080_1	1.22\|3056169\|32\|NC_011080\|CRISPRCasFinder,CRT	3056169-3056200	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NC_011080_1	1.22\|3056169\|32\|NC_011080\|CRISPRCasFinder,CRT	3056169-3056200	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NC_011080_1	1.32\|3055195\|32\|NC_011080\|PILER-CR	3055195-3055226	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688
NC_011080_1	1.40\|3055683\|32\|NC_011080\|PILER-CR	3055683-3055714	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NC_011080_1	1.40\|3055683\|32\|NC_011080\|PILER-CR	3055683-3055714	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NC_011080_1	1.42\|3055805\|32\|NC_011080\|PILER-CR	3055805-3055836	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NC_011080_1	1.48\|3056171\|32\|NC_011080\|PILER-CR	3056171-3056202	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NC_011080_1	1.48\|3056171\|32\|NC_011080\|PILER-CR	3056171-3056202	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NC_011080_2	2.2\|3073231\|32\|NC_011080\|CRISPRCasFinder,CRT	3073231-3073262	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NC_011080_2	2.3\|3073292\|32\|NC_011080\|CRISPRCasFinder,CRT	3073292-3073323	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NC_011080_2	2.3\|3073292\|32\|NC_011080\|CRISPRCasFinder,CRT	3073292-3073323	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NC_011080_2	2.3\|3073292\|32\|NC_011080\|CRISPRCasFinder,CRT	3073292-3073323	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NC_011080_2	2.3\|3073292\|32\|NC_011080\|CRISPRCasFinder,CRT	3073292-3073323	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NC_011080_2	2.4\|3073353\|32\|NC_011080\|CRISPRCasFinder,CRT	3073353-3073384	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NC_011080_2	2.11\|3073780\|32\|NC_011080\|CRISPRCasFinder,CRT	3073780-3073811	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NC_011080_2	2.11\|3073780\|32\|NC_011080\|CRISPRCasFinder,CRT	3073780-3073811	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NC_011080_2	2.14\|3073963\|32\|NC_011080\|CRISPRCasFinder,CRT	3073963-3073994	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NC_011080_2	2.20\|3073232\|32\|NC_011080\|PILER-CR	3073232-3073263	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NC_011080_2	2.21\|3073293\|32\|NC_011080\|PILER-CR	3073293-3073324	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NC_011080_2	2.21\|3073293\|32\|NC_011080\|PILER-CR	3073293-3073324	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NC_011080_2	2.21\|3073293\|32\|NC_011080\|PILER-CR	3073293-3073324	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NC_011080_2	2.21\|3073293\|32\|NC_011080\|PILER-CR	3073293-3073324	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NC_011080_2	2.22\|3073354\|32\|NC_011080\|PILER-CR	3073354-3073385	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NC_011080_2	2.29\|3073781\|32\|NC_011080\|PILER-CR	3073781-3073812	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NC_011080_2	2.29\|3073781\|32\|NC_011080\|PILER-CR	3073781-3073812	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NC_011080_2	2.32\|3073964\|32\|NC_011080\|PILER-CR	3073964-3073995	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688

1. spacer 1.1|3054888|32|NC_011080|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

2. spacer 1.1|3054888|32|NC_011080|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

3. spacer 1.1|3054888|32|NC_011080|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

4. spacer 1.27|3054890|32|NC_011080|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

5. spacer 1.27|3054890|32|NC_011080|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

6. spacer 1.27|3054890|32|NC_011080|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

gatgagcaacacgcccgcactggcgtaactta	CRISPR spacer
gatgagcaacacgcctgcactggcgtaactta	Protospacer
***************.****************

7. spacer 1.17|3055864|32|NC_011080|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
aaggcctcccgcacccagatgcgatcgcctgg	Protospacer
** *..***********.*********** **

8. spacer 1.43|3055866|32|NC_011080|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
aaggcctcccgcacccagatgcgatcgcctgg	Protospacer
** *..***********.*********** **

9. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

10. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

11. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

12. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.839

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatct	Protospacer
 .**** ******* *.**************.

13. spacer 1.17|3055864|32|NC_011080|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
catgtttcacgcacccagatgcgatcgccgac	Protospacer
 ******* ********.***********..

14. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ttata-gagttgactcaaattcatttttattcc	CRISPR spacer
-tatatcagttgactcaaatacttttttattat	Protospacer
 ****  ************* * ******** .

15. spacer 1.43|3055866|32|NC_011080|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

aatgtttcccgcacccaaatgcgatcgccagg	CRISPR spacer
catgtttcacgcacccagatgcgatcgccgac	Protospacer
 ******* ********.***********..

16. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ttata-gagttgactcaaattcatttttattcc	CRISPR spacer
-tatatcagttgactcaaatacttttttattat	Protospacer
 ****  ************* * ******** .

17. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 6, identity: 0.806

-acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
cgcgccga-ggaagcgaccgccagcgcgagcc	Protospacer
 .** *.* *** **************** **

18. spacer 2.7|3073536|32|NC_011080|CRISPRCasFinder,CRT matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

aacccttacggttatatgaaagaagattttta	CRISPR spacer
aatacatacgtttctatgaaagaagattttca	Protospacer
**. * **** ** ****************.*

19. spacer 2.25|3073537|32|NC_011080|PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

aacccttacggttatatgaaagaagattttta	CRISPR spacer
aatacatacgtttctatgaaagaagattttca	Protospacer
**. * **** ** ****************.*

20. spacer 1.6|3055193|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
agcgtggattcaatcgtcgcggcatacatcgc	Protospacer
**. .*  .**.********************

21. spacer 1.6|3055193|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgctcttgttcgtcgcggcatgaatggt	Protospacer
 *********.* ************. ** *.

22. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
gtagggagttacctcaaattcatttttataca	Protospacer
 ** .*****. ***************** *

23. spacer 1.32|3055195|32|NC_011080|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
agcgtggattcaatcgtcgcggcatacatcgc	Protospacer
**. .*  .**.********************

24. spacer 1.32|3055195|32|NC_011080|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgctcttgttcgtcgcggcatgaatggt	Protospacer
 *********.* ************. ** *.

25. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
gtagggagttacctcaaattcatttttataca	Protospacer
 ** .*****. ***************** *

26. spacer 2.1|3073171|31|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

acggcaacggatgcgaccgccagcgcgatcc	CRISPR spacer
cgggccgaggatgcgaccgcgagcgcgagcc	Protospacer
  *** . ************ ******* **

27. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

28. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

29. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ttgatga--aagttcatctaataatgattgtgct	CRISPR spacer
--catcaccaagttcatctaataattcttgtgtt	Protospacer
   ** *  ****************  *****.*

30. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttttatctgctttcggtaagaatctgttgcca	Protospacer
**. * ****** ********* *******

31. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

32. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

33. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

34. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

35. spacer 2.18|3074207|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

atggcgtgtctcgattgcgcgctgccgcactg	CRISPR spacer
agagcccgtctcgattgctcgctgtcgcaccg	Protospacer
* .** .*********** *****.*****.*

36. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

37. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

ttgatgaaagttcatctaataatgatt-gtgct	CRISPR spacer
ttgatgcaagttcatctaaaaatctttcgtaa-	Protospacer
****** ************ ***  ** **.

38. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ttgatga--aagttcatctaataatgattgtgct	CRISPR spacer
--catcaccaagttcatctaataattcttgtgtt	Protospacer
   ** *  ****************  *****.*

39. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttttatctgctttcggtaagaatctgttgcca	Protospacer
**. * ****** ********* *******

40. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

41. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

42. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

43. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
ttctgcctgcttgtggtaagaatctgttgcca	Protospacer
*** . *******.******** *******

44. spacer 2.36|3074208|32|NC_011080|PILER-CR matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

atggcgtgtctcgattgcgcgctgccgcactg	CRISPR spacer
agagcccgtctcgattgctcgctgtcgcaccg	Protospacer
* .** .*********** *****.*****.*

45. spacer 1.6|3055193|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

46. spacer 1.6|3055193|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

47. spacer 1.32|3055195|32|NC_011080|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

48. spacer 1.32|3055195|32|NC_011080|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
tgttcgttctcgatcgtcgtggcataaggttc	Protospacer
 *****.************.****** . . *

49. spacer 2.4|3073353|32|NC_011080|CRISPRCasFinder,CRT matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

gccacc--cggacaacaaaatgaatcccgatgat	CRISPR spacer
--cattaggggacaacaaaatgcatcacgatgac	Protospacer
  **..   ************* *** ******.

50. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aagcagctgcatgcggaaagaaactgttgcaa	Protospacer
    *.**** ***** **************

51. spacer 2.5|3073414|32|NC_011080|CRISPRCasFinder,CRT matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aacaaactgctggcggtcagaaactgaataac	Protospacer
  ********* ***** ********    **

52. spacer 2.12|3073841|32|NC_011080|CRISPRCasFinder,CRT matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

aaactctgggcgctcgaatggctgtcctattg	CRISPR spacer
acggactgggcgctcgaatagctgtcctgtga	Protospacer
* .  **************.********.* .

53. spacer 2.22|3073354|32|NC_011080|PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

gccacc--cggacaacaaaatgaatcccgatgat	CRISPR spacer
--cattaggggacaacaaaatgcatcacgatgac	Protospacer
  **..   ************* *** ******.

54. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aagcagctgcatgcggaaagaaactgttgcaa	Protospacer
    *.**** ***** **************

55. spacer 2.23|3073415|32|NC_011080|PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

ttcaaactgcttgcggtaagaaactgttgcac	CRISPR spacer
aacaaactgctggcggtcagaaactgaataac	Protospacer
  ********* ***** ********    **

56. spacer 2.30|3073842|32|NC_011080|PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

aaactctgggcgctcgaatggctgtcctattg	CRISPR spacer
acggactgggcgctcgaatagctgtcctgtga	Protospacer
* .  **************.********.* .

57. spacer 1.1|3054888|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gatgagcaacacgcccgcact---ggcgtaactta	CRISPR spacer
catgagcaacgcgcccgcactcgccgcgcagt---	Protospacer
 *********.**********    ***.*..

58. spacer 1.15|3055742|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgattgtcaaaatcaaaaaacaggccgagtc	CRISPR spacer
gtgtaagtcaaaatgaaagaacaggccgacgg	Protospacer
 **   ******** ***.**********

59. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

60. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

61. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

62. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

63. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

64. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

65. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

66. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

67. spacer 1.21|3056108|32|NC_011080|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

68. spacer 1.25|3056352|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
ccggccccgcacgcaaacaatccgaccaatgg	Protospacer
*** * ******************. *. . .

69. spacer 1.25|3056352|32|NC_011080|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

70. spacer 1.25|3056352|32|NC_011080|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

71. spacer 1.25|3056352|32|NC_011080|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

72. spacer 1.26|3056413|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaccccttttaaatactgccgttccag	CRISPR spacer
ttgcaaaccgcttttaattactgccgtttacg	Protospacer
*..  **** ******* **********.  *

73. spacer 1.27|3054890|32|NC_011080|PILER-CR matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gatgagcaacacgcccgcact---ggcgtaactta	CRISPR spacer
catgagcaacgcgcccgcactcgccgcgcagt---	Protospacer
 *********.**********    ***.*..

74. spacer 1.41|3055744|32|NC_011080|PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgattgtcaaaatcaaaaaacaggccgagtc	CRISPR spacer
gtgtaagtcaaaatgaaagaacaggccgacgg	Protospacer
 **   ******** ***.**********

75. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

76. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

77. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

78. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

79. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

80. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

81. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

82. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattagaa	Protospacer
*.********** **** ******* *

83. spacer 1.47|3056110|32|NC_011080|PILER-CR matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ttatagagttgactcaaattcatttttattcc	CRISPR spacer
tcatagagttgaatcaatttcatttattaaaa	Protospacer
*.********** **** ******* *

84. spacer 1.51|3056354|32|NC_011080|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
ccggccccgcacgcaaacaatccgaccaatgg	Protospacer
*** * ******************. *. . .

85. spacer 1.51|3056354|32|NC_011080|PILER-CR matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

86. spacer 1.51|3056354|32|NC_011080|PILER-CR matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

87. spacer 1.51|3056354|32|NC_011080|PILER-CR matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

ccgtcgccgcacgcaaacaatccgggcgccca	CRISPR spacer
cattcgccgcacgcaaaaaagccgggcttggg	Protospacer
*  ************** ** ****** .  .

88. spacer 1.52|3056415|32|NC_011080|PILER-CR matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaccccttttaaatactgccgttccag	CRISPR spacer
ttgcaaaccgcttttaattactgccgtttacg	Protospacer
*..  **** ******* **********.  *

89. spacer 2.7|3073536|32|NC_011080|CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

90. spacer 2.7|3073536|32|NC_011080|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

91. spacer 2.7|3073536|32|NC_011080|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

92. spacer 2.10|3073719|32|NC_011080|CRISPRCasFinder,CRT matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

gttttctctacatttagctatagacgttagtt	CRISPR spacer
attttctccacttttagctatagaacctttta	Protospacer
.*******.** ************  .*  *

93. spacer 2.25|3073537|32|NC_011080|PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

94. spacer 2.25|3073537|32|NC_011080|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

95. spacer 2.25|3073537|32|NC_011080|PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

aacccttacggttatatgaaagaagattttta	CRISPR spacer
attgcttaccgttatgtgaaagaagataatac	Protospacer
* . ***** *****.***********  *

96. spacer 2.28|3073720|32|NC_011080|PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

gttttctctacatttagctatagacgttagtt	CRISPR spacer
attttctccacttttagctatagaacctttta	Protospacer
.*******.** ************  .*  *

97. spacer 1.6|3055193|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
ttttcggtatcgatcgtcgcggcatggacaaa	Protospacer
  **** * ****************. *. .

98. spacer 1.14|3055681|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

99. spacer 1.14|3055681|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

100. spacer 1.16|3055803|32|NC_011080|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

gagcgaaggtgcaacattatcaccatattcgg	CRISPR spacer
ccaagacggtgaaacattatcaccataagtag	Protospacer
  . ** **** ***************  ..*

101. spacer 1.22|3056169|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

102. spacer 1.22|3056169|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

103. spacer 1.32|3055195|32|NC_011080|PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

agttcgctctcgatcgtcgcggcatacatcgc	CRISPR spacer
ttttcggtatcgatcgtcgcggcatggacaaa	Protospacer
  **** * ****************. *. .

104. spacer 1.40|3055683|32|NC_011080|PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

105. spacer 1.40|3055683|32|NC_011080|PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgcacggcgtttgccctcgtcggttattgg	CRISPR spacer
accgcacggcgggtgccctcgtcggcgctgat	Protospacer
  *********  ************.  * .

106. spacer 1.42|3055805|32|NC_011080|PILER-CR matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

gagcgaaggtgcaacattatcaccatattcgg	CRISPR spacer
ccaagacggtgaaacattatcaccataagtag	Protospacer
  . ** **** ***************  ..*

107. spacer 1.48|3056171|32|NC_011080|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

108. spacer 1.48|3056171|32|NC_011080|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tagccgggtctgtatcgaataccagccccgcg	CRISPR spacer
ggcgcgggtcggaatcgaataccagcccgagc	Protospacer
 .  ****** * *************** .

109. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
ttgttgaaaattcatctaataatgccataaga	Protospacer
*** *****.************** .   .

110. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

111. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

112. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

113. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

114. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

115. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

116. spacer 2.2|3073231|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

117. spacer 2.3|3073292|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

118. spacer 2.3|3073292|32|NC_011080|CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

119. spacer 2.3|3073292|32|NC_011080|CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

120. spacer 2.3|3073292|32|NC_011080|CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

121. spacer 2.4|3073353|32|NC_011080|CRISPRCasFinder,CRT matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

gccacccggacaacaaaatgaatcccgatgat	CRISPR spacer
ttgatgaatacaacaaaatgaatcctgataat	Protospacer
 . *.  . ****************.***.**

122. spacer 2.11|3073780|32|NC_011080|CRISPRCasFinder,CRT matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

123. spacer 2.11|3073780|32|NC_011080|CRISPRCasFinder,CRT matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

124. spacer 2.14|3073963|32|NC_011080|CRISPRCasFinder,CRT matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

gagacttttcacactgataatgttgttatttt	CRISPR spacer
attaaagttgacactgataaggttgttattgc	Protospacer
.  *   ** ********** ********* .

125. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
ttgttgaaaattcatctaataatgccataaga	Protospacer
*** *****.************** .   .

126. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

127. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

128. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

129. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

130. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

131. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

132. spacer 2.20|3073232|32|NC_011080|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatgaaagttcatctaataatgattgtgct	CRISPR spacer
aaaagaaaagttcatctaataatgcatgttgg	Protospacer
  .* .******************  ***

133. spacer 2.21|3073293|32|NC_011080|PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

134. spacer 2.21|3073293|32|NC_011080|PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
ctgccgtttttatttttcgacatagaaatgca	Protospacer
  .***.********** ********.   *.

135. spacer 2.21|3073293|32|NC_011080|PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

136. spacer 2.21|3073293|32|NC_011080|PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

gaaccgcttttatttttagacatagagcaccg	CRISPR spacer
atacccctttcatttttagacataggtatcta	Protospacer
. *** ****.**************.   *..

137. spacer 2.22|3073354|32|NC_011080|PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

gccacccggacaacaaaatgaatcccgatgat	CRISPR spacer
ttgatgaatacaacaaaatgaatcctgataat	Protospacer
 . *.  . ****************.***.**

138. spacer 2.29|3073781|32|NC_011080|PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

139. spacer 2.29|3073781|32|NC_011080|PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

tggcctgactttatcaagcagtgcatactgac	CRISPR spacer
ccaggtaactttatcaagctgtccatactgtg	Protospacer
. .  *.************ ** *******

140. spacer 2.32|3073964|32|NC_011080|PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

gagacttttcacactgataatgttgttatttt	CRISPR spacer
attaaagttgacactgataaggttgttattgc	Protospacer
.  *   ** ********** ********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

980219 : 987533

Dickeya_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201748.1\|980219_981338_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.9
WP_000125893.1\|981334_983281_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_000447499.1\|983410_983632_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|983955_984276_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|984306_986583_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|986796_986994_-	hypothetical protein	NA	NA	NA	NA
WP_001670446.1\|987155_987533_-	hypothetical protein	A0A077KET4	Ralstonia_phage	5.9e-20	42.7

DBSCAN-SWA_2

1037884 : 1178564

159

Salmonella_phage(50.98%)

tRNA,lysis,terminase,capsid,tail,portal,plate,holin,protease,integrase

attL 1135821:1135880|attR 1177687:1177764

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154027.1\|1037884_1038688_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1038680_1040003_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060024.1\|1039983_1040688_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572746.1\|1040687_1045154_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925875.1\|1045498_1047346_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1047605_1048154_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1048181_1048829_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1048890_1050081_-	aspartate transaminase	NA	NA	NA	NA
WP_000977709.1\|1050265_1051357_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000117870.1\|1051963_1053364_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762343.1\|1053564_1054026_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544853.1\|1054342_1055557_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893197.1\|1055802_1057236_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191406.1\|1057316_1058519_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|1058713_1060006_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1060050_1060299_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1060339_1060579_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1060621_1061779_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_000017133.1\|1061741_1064627_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001668146.1\|1064753_1065053_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|1065074_1065233_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_014344008.1\|1065225_1065486_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|1065535_1065946_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|1066065_1066305_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|1066270_1066645_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1066729_1067713_+	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|1067715_1068465_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113629.1\|1068475_1068823_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000065108.1\|1068819_1069131_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_014343823.1\|1069208_1069499_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|1069790_1070024_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|1070135_1070357_+	hypothetical protein	NA	NA	NA	NA
WP_000929805.1\|1070439_1071042_+	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001096552.1\|1071250_1071862_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001617856.1\|1071858_1072005_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1071994_1072792_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|1072858_1073176_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|1073349_1073475_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1073610_1074060_-	hypothetical protein	NA	NA	NA	NA
WP_001141973.1\|1074420_1075107_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_001574216.1\|1075382_1075712_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|1075695_1076148_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|1076165_1076645_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1076852_1077386_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1077342_1079481_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1079477_1079684_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009207.1\|1079680_1081228_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_010989008.1\|1081151_1083233_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|1083323_1083647_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1083639_1083939_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|1083919_1084486_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|1084482_1084884_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|1084895_1085645_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|1085690_1086089_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1086085_1086415_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_010989010.1\|1086494_1089482_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_000978296.1\|1089478_1089811_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|1089909_1090407_+	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1090523_1091057_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1091146_1091842_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1091851_1092589_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1092486_1093191_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000033415.1\|1093262_1096613_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
WP_000178849.1\|1096651_1096894_+	hypothetical protein	NA	NA	NA	NA
WP_001144679.1\|1096947_1099386_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000143167.1\|1099385_1099967_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001526469.1\|1100442_1101411_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
WP_000334547.1\|1102058_1102685_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1102753_1103053_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1103037_1103724_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1103994_1104186_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193770.1\|1104612_1107225_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
WP_000291723.1\|1107432_1108443_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001670452.1\|1108608_1109151_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224072.1\|1109147_1110257_-	YcbX family protein	NA	NA	NA	NA
WP_001086485.1\|1110355_1112464_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1112476_1114384_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|1114398_1115652_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433416.1\|1115656_1117297_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1117293_1117857_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1118112_1118280_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1118379_1118898_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156448.1\|1118966_1120727_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1120912_1121365_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001670727.1\|1121436_1122489_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1122845_1123355_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1123571_1124177_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950876.1\|1124163_1126317_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1126335_1126782_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420513.1\|1126905_1128960_+	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
WP_000424187.1\|1128995_1129454_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847732.1\|1129548_1130211_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1130384_1130798_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1130842_1131160_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140482.1\|1131217_1132429_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859429.1\|1132643_1133192_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548080.1\|1133217_1133997_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|1134045_1134327_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1134323_1134653_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|1134739_1135399_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
1135821:1135880	attL	NA	NA	NA	NA
WP_000533596.1\|1135986_1137006_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
WP_000196402.1\|1137006_1137231_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000916251.1\|1137443_1137626_-	hypothetical protein	NA	NA	NA	NA
WP_000205292.1\|1137628_1138183_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
WP_000158391.1\|1138179_1140444_-	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-102	34.7
WP_001192832.1\|1140473_1140719_-	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_000387662.1\|1140726_1141050_-	hypothetical protein	NA	NA	NA	NA
WP_023972394.1\|1141734_1142190_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	4.6e-35	51.7
WP_001643782.1\|1142595_1143042_+	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
WP_001195066.1\|1143064_1143289_+	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_000063056.1\|1143291_1144272_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
WP_000074839.1\|1144268_1145657_+	DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
WP_000130738.1\|1145694_1146375_+	hypothetical protein	NA	NA	NA	NA
WP_000918617.1\|1146378_1146627_+	hypothetical protein	NA	NA	NA	NA
WP_001037052.1\|1146619_1147222_+	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
WP_000180135.1\|1147218_1147389_+	hypothetical protein	I6S1S6	Salmonella_phage	6.3e-06	87.5
WP_001129735.1\|1147388_1147727_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_000474096.1\|1147910_1148102_+	hypothetical protein	NA	NA	NA	NA
WP_000090037.1\|1148170_1148767_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
WP_000717784.1\|1148763_1149057_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
WP_000640103.1\|1149053_1149632_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
WP_000658037.1\|1150024_1150213_+	hypothetical protein	NA	NA	NA	NA
WP_001525456.1\|1150415_1150718_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_000951228.1\|1150695_1151235_+	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
WP_086374239.1\|1151552_1152008_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-53	76.8
WP_001118126.1\|1152508_1153138_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.1
WP_001130808.1\|1153140_1154763_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
WP_000113503.1\|1154762_1156232_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.2
WP_137911068.1\|1156116_1156863_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	3.1e-97	91.2
WP_000873181.1\|1156866_1158099_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.7e-228	99.3
WP_000128057.1\|1158103_1158601_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000627463.1\|1158612_1159554_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	99.7
WP_001040693.1\|1159595_1159985_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	4.0e-32	62.0
WP_001125672.1\|1159950_1160358_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	96.3
WP_000008738.1\|1160354_1160909_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
WP_001121925.1\|1160895_1161285_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.1e-68	98.4
WP_001670724.1\|1161259_1161823_+	hypothetical protein	A0A0M4R331	Salmonella_phage	2.1e-82	78.7
WP_001135539.1\|1161826_1162972_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
WP_000535992.1\|1162984_1163428_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-55	74.5
WP_000389049.1\|1163431_1163884_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
WP_000990866.1\|1164061_1166071_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
WP_000353826.1\|1166070_1166646_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_000155111.1\|1166645_1166948_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_000081749.1\|1166950_1168018_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
WP_000819157.1\|1168014_1168347_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
WP_000931859.1\|1168430_1168886_-	hypothetical protein	NA	NA	NA	NA
WP_000301078.1\|1169004_1169757_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
WP_001270641.1\|1169756_1170110_+	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
WP_001197089.1\|1170110_1171310_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
WP_000049939.1\|1171306_1171987_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
WP_001670454.1\|1171986_1173519_+	hypothetical protein	S4TP62	Salmonella_phage	1.4e-128	66.2
WP_000421108.1\|1173533_1174052_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
WP_071786695.1\|1174300_1174486_+	hypothetical protein	NA	NA	NA	NA
WP_000370530.1\|1174548_1175157_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
WP_000033280.1\|1175266_1175659_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
WP_127913510.1\|1175856_1176102_-	hypothetical protein	NA	NA	NA	NA
WP_001670723.1\|1176284_1176482_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
WP_000503667.1\|1176524_1177172_-	hypothetical protein	NA	NA	NA	NA
WP_000938182.1\|1177883_1178564_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
1177687:1177764	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2078582 : 2085833

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157313.1\|2078582_2080013_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377036.1\|2080086_2080782_-	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
WP_000107431.1\|2080861_2081173_-	hypothetical protein	NA	NA	NA	NA
WP_001080660.1\|2081822_2083019_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_024131109.1\|2083276_2083465_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2083475_2083688_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457658.1\|2084142_2085411_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000394197.1\|2085413_2085833_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2183704 : 2192871

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000565902.1\|2183704_2184784_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000648783.1\|2184788_2185562_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018224.1\|2185577_2186552_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973714.1\|2186557_2187109_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000857530.1\|2187109_2187988_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_001023659.1\|2188035_2188935_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697840.1\|2188934_2190020_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981471.1\|2190396_2191290_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111837.1\|2191467_2192871_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_5

2260962 : 2270133

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2260962_2262996_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2263236_2263695_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|2263866_2264397_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2264453_2264921_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2264967_2265687_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2265683_2267369_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240417.1\|2267591_2268323_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2268382_2268490_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2268470_2269202_-	ABC transporter permease	NA	NA	NA	NA
WP_000569168.1\|2269185_2270133_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

DBSCAN-SWA_6

2683634 : 2879519

189

Cronobacter_phage(27.36%)

tRNA,lysis,terminase,capsid,tail,portal,plate,holin,protease,head,transposase,integrase

attL 2708179:2708195|attR 2883629:2883644

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940030.1\|2683634_2684366_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553474.1\|2684484_2685288_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174939.1\|2685432_2686311_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	6.0e-15	24.7
WP_000985200.1\|2686492_2687536_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2687539_2688358_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2688368_2689382_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111025.1\|2689382_2690369_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2690359_2690998_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982964.1\|2691123_2692401_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2692395_2693535_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2693730_2694984_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883146.1\|2695308_2696499_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2696680_2698225_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA
WP_000100008.1\|2698585_2699917_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2699999_2702144_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2702199_2703660_+	dipeptide permease DtpD	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2703708_2704047_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2704123_2705461_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054239.1\|2705457_2706222_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2706223_2707654_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
2708179:2708195	attL	NA	NA	NA	NA
WP_000970062.1\|2708303_2712191_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	8.0e-128	57.6
2708179:2708195	attL	NA	NA	NA	NA
WP_001667158.1\|2712215_2712446_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2712446_2713991_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134572.1\|2714041_2714593_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2714617_2715253_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2715256_2716618_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_001048530.1\|2716628_2717522_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995694.1\|2717637_2718486_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684023.1\|2718524_2719442_-	oxidoreductase	NA	NA	NA	NA
WP_001276364.1\|2719463_2720660_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022472.1\|2720775_2721702_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.8e-09	24.4
WP_001196291.1\|2721739_2722000_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
WP_000986042.1\|2722111_2722492_-	holo-ACP synthase	NA	NA	NA	NA
WP_000818972.1\|2722491_2723223_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399380.1\|2723234_2723963_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2723974_2724880_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2724876_2725557_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2725830_2726805_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2726821_2728621_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_010989047.1\|2729025_2730519_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_001542312.1\|2731003_2731141_+	hypothetical protein	NA	NA	NA	NA
WP_001526383.1\|2731853_2731973_-\|transposase	transposase	NA	NA	NA	NA
WP_001738443.1\|2732725_2732938_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2733044_2733272_+	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_000143154.1\|2733368_2733947_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2733936_2734761_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144691.1\|2734757_2737130_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000178853.1\|2737183_2737426_-	hypothetical protein	NA	NA	NA	NA
WP_000514917.1\|2737464_2740827_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000246126.1\|2740888_2741536_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2741433_2742171_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2742177_2742876_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2742885_2743215_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2743217_2746313_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|2746284_2746623_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2746619_2747015_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2747065_2747812_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2747819_2748221_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2748329_2749460_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2749508_2750087_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2750114_2750498_-\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2750508_2750868_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|2750925_2751954_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2752008_2752356_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2752368_2753865_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2753854_2755435_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2755431_2755635_-	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2755618_2757550_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2757521_2758067_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2758353_2758755_+	PPC domain-containing protein	NA	NA	NA	NA
WP_001533543.1\|2758990_2759443_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984581.1\|2759460_2759913_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|2759896_2760226_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|2760501_2761188_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|2761402_2761591_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2762097_2762661_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_001097241.1\|2762933_2763611_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2763607_2763748_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096562.1\|2763744_2764356_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.8e-90	98.5
WP_000929791.1\|2764564_2765167_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_014343878.1\|2765201_2765450_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2765566_2765800_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000877757.1\|2766042_2766675_-	hypothetical protein	NA	NA	NA	NA
WP_000664368.1\|2766782_2767481_-	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
WP_000801764.1\|2767494_2768190_-	hypothetical protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
WP_000024044.1\|2768186_2769071_-	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
WP_010835408.1\|2769162_2769537_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_000643689.1\|2769496_2769739_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
WP_000660736.1\|2769838_2770234_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	1.9e-37	61.4
WP_001111772.1\|2770292_2771132_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
WP_000356948.1\|2771124_2771511_+	hypothetical protein	NA	NA	NA	NA
WP_000950426.1\|2771510_2772173_+	hypothetical protein	NA	NA	NA	NA
WP_000917562.1\|2772629_2772788_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2772809_2773160_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000017128.1\|2773286_2776214_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	99.2
WP_077248255.1\|2776176_2777334_+	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
WP_001237031.1\|2777376_2777616_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001670787.1\|2777656_2777941_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001007934.1\|2777918_2779148_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	4.9e-233	94.1
WP_000589050.1\|2779645_2780125_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2780121_2781078_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168374.1\|2781077_2781728_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2781759_2782335_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2782331_2782496_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989165.1\|2782759_2784382_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083342.1\|2784366_2785104_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|2785233_2786568_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001670786.1\|2786585_2787485_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188414.1\|2787587_2788175_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|2788236_2788620_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|2788938_2789628_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997365.1\|2789743_2790781_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|2790984_2791404_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000183641.1\|2791476_2792157_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082646.1\|2792210_2794871_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2794985_2796341_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264478.1\|2796385_2796709_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807818.1\|2796705_2798007_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
WP_000985653.1\|2798110_2798566_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235092.1\|2804640_2807214_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
2798685:2798701	attR	NA	NA	NA	NA
WP_000992639.1\|2807343_2808075_-	polyphenol oxidase	NA	NA	NA	NA
2798685:2798701	attR	NA	NA	NA	NA
WP_000079130.1\|2808071_2809052_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|2809183_2809921_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2810192_2810531_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|2810634_2810682_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200080.1\|2810781_2811942_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000632386.1\|2811902_2812811_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225194.1\|2812868_2813990_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2813999_2815070_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212380.1\|2815509_2816028_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|2816020_2817241_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|2817397_2817745_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|2817785_2818553_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|2818597_2819146_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|2819164_2819413_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|2819665_2821027_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|2821192_2821984_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|2822003_2823290_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001294020.1\|2823410_2824016_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|2824050_2824641_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|2824763_2825642_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|2825727_2827389_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|2827537_2827876_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|2828041_2828332_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|2828321_2828798_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|2828947_2829430_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237676.1\|2830043_2841209_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_000533874.1\|2841273_2842683_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196147.1\|2842679_2844860_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
WP_000342601.1\|2844867_2846031_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_001177838.1\|2846546_2846795_+	hypothetical protein	NA	NA	NA	NA
WP_000136561.1\|2848420_2849539_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_000977536.1\|2850219_2851923_-	hypothetical protein	F1BUJ7	Cronobacter_phage	4.9e-223	81.3
WP_000200789.1\|2851922_2852468_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_000267955.1\|2852439_2853165_-	hypothetical protein	F1BUK1	Cronobacter_phage	5.5e-67	56.0
WP_000861354.1\|2853154_2853709_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	9.4e-91	89.5
WP_000084299.1\|2853721_2855827_-\|tail	phage tail protein	S4TP62	Salmonella_phage	8.8e-198	69.0
WP_001001823.1\|2855836_2856424_-	hypothetical protein	F1BUK5	Cronobacter_phage	8.4e-90	82.1
WP_000136921.1\|2856416_2857601_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001002797.1\|2857597_2857927_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811087.1\|2857923_2859894_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.2e-266	68.8
WP_000411339.1\|2860081_2860339_-\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_000376370.1\|2860485_2860818_-	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
WP_000175560.1\|2860817_2861159_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154425.1\|2861155_2861449_-\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000166743.1\|2861458_2861914_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_000220203.1\|2861910_2863038_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
WP_000560083.1\|2863034_2863742_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
WP_000084220.1\|2863738_2864245_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_001628758.1\|2864241_2864694_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	3.6e-64	82.0
WP_001218537.1\|2864790_2865492_-\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
WP_000550496.1\|2865495_2866518_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_000018802.1\|2866579_2867383_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
WP_001151940.1\|2867543_2869319_+	hypothetical protein	F1BUM5	Cronobacter_phage	7.0e-289	82.6
WP_000038205.1\|2869315_2870377_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.0e-163	77.1
WP_001669965.1\|2870373_2870697_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000960961.1\|2870670_2870889_-	hypothetical protein	E5G6M0	Salmonella_phage	3.6e-06	49.1
WP_000171003.1\|2871001_2873023_-	replication endonuclease	F1BUM9	Cronobacter_phage	1.9e-298	74.9
WP_000279398.1\|2873019_2873853_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.6e-105	68.3
WP_000985848.1\|2873842_2874172_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	2.0e-11	45.2
WP_000057335.1\|2874162_2874393_-	DUF2732 family protein	NA	NA	NA	NA
WP_000022786.1\|2874460_2874862_-	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000996734.1\|2874861_2875287_-	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
WP_000643375.1\|2875276_2875504_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000460879.1\|2875513_2876017_-	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	1.5e-58	71.3
WP_000204908.1\|2876054_2876258_-	hypothetical protein	F1BUN7	Cronobacter_phage	1.0e-10	52.0
WP_001047672.1\|2876403_2876970_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.1e-65	59.7
WP_000290918.1\|2876969_2877980_+\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	9.5e-174	85.7
WP_000124716.1\|2878325_2879519_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.6e-106	49.6
2883629:2883644	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2882608 : 2888421

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210079.1\|2882608_2883175_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.8e-55	62.2
WP_000984206.1\|2883191_2883437_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	4.8e-31	76.5
WP_000194694.1\|2883433_2884171_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.3
WP_000556587.1\|2884711_2884978_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_000980251.1\|2884974_2885532_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.7e-29	66.4
WP_001216598.1\|2885528_2885756_+	hypothetical protein	NA	NA	NA	NA
WP_000743153.1\|2885752_2886073_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783706.1\|2886087_2888421_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5

DBSCAN-SWA_8

4198538 : 4292636

106

Salmonella_phage(40.0%)

tRNA,lysis,terminase,capsid,tail,portal,plate,protease,head,integrase

attL 4231756:4231802|attR 4262735:4262781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560969.1\|4198538_4198976_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001518251.1\|4199020_4199962_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001259011.1\|4199976_4200423_-	type II toxin-antitoxin system HigA family antitoxin	NA	NA	NA	NA
WP_000558166.1\|4200419_4200731_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_001127704.1\|4200816_4201746_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001159630.1\|4201963_4202275_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA
WP_000362050.1\|4202275_4202566_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000027730.1\|4202612_4203542_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829025.1\|4203538_4204174_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331364.1\|4204170_4205073_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_077248424.1\|4205085_4208136_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	4.6e-06	24.1
WP_001059744.1\|4208330_4209167_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000710967.1\|4209434_4210466_-	YiiG family protein	NA	NA	NA	NA
WP_000828039.1\|4210648_4211749_+	DUF3829 domain-containing protein	NA	NA	NA	NA
WP_000527677.1\|4212091_4212415_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_000683586.1\|4212414_4213074_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_001517951.1\|4213174_4213723_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000619474.1\|4213811_4214126_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_000009249.1\|4214122_4215271_-	lactaldehyde reductase	NA	NA	NA	NA
WP_001179685.1\|4215397_4216225_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000211454.1\|4216367_4217627_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000143957.1\|4217623_4219093_-	rhamnulokinase	NA	NA	NA	NA
WP_000217112.1\|4219380_4220217_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_000013290.1\|4220369_4221218_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063541.1\|4221214_4222249_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_000378721.1\|4222867_4223551_+	oligogalacturonate-specific porin KdgM family protein	NA	NA	NA	NA
WP_000566800.1\|4223709_4225017_-	TRAP transporter large permease	NA	NA	NA	NA
WP_001091413.1\|4225009_4225525_-	TRAP transporter small permease	NA	NA	NA	NA
WP_000812816.1\|4225543_4226527_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000122632.1\|4226855_4227476_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9
WP_000559230.1\|4227545_4228235_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000133442.1\|4228246_4228642_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000338672.1\|4228762_4228966_+	hypothetical protein	NA	NA	NA	NA
WP_000580402.1\|4229013_4230387_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_001033731.1\|4230383_4231082_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001233463.1\|4231232_4231733_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4231756:4231802	attL	NA	NA	NA	NA
WP_000985251.1\|4231917_4232898_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
WP_001099751.1\|4232967_4233261_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
WP_001583792.1\|4233397_4233670_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
WP_001670778.1\|4233839_4234340_+	hypothetical protein	M1SV55	Escherichia_phage	1.8e-85	91.0
WP_000557712.1\|4234403_4234628_+	DUF2732 family protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
WP_001113578.1\|4234929_4235154_+	TraR/DksA C4-type zinc finger protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
WP_000027647.1\|4235150_4235426_+	DUF5405 family protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
WP_000257582.1\|4235415_4237692_+	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
WP_000037667.1\|4237870_4238068_+	hypothetical protein	NA	NA	NA	NA
WP_000680929.1\|4238064_4239105_-	Fic family protein	S4TP71	Salmonella_phage	6.3e-197	100.0
WP_000042036.1\|4239238_4239670_-	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
WP_000551923.1\|4239668_4239860_+	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
WP_000039235.1\|4240380_4241418_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
WP_000214048.1\|4241417_4243187_-\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	3.2e-286	81.0
WP_001074705.1\|4243351_4244215_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
WP_001224307.1\|4244246_4245407_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
WP_000224816.1\|4245410_4246169_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
WP_000177982.1\|4246266_4246767_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_001100637.1\|4246766_4246970_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000524754.1\|4246960_4247182_+	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_000534554.1\|4247165_4247675_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_000849743.1\|4247671_4248085_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	8.4e-36	59.9
WP_000277800.1\|4248192_4248660_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
WP_000997680.1\|4248652_4249120_+	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
WP_000273577.1\|4249124_4250501_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_001093789.1\|4250577_4251219_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
WP_000127150.1\|4251215_4251563_+	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_000246674.1\|4251569_4252478_+\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
WP_001000070.1\|4252470_4253001_+\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
WP_000104695.1\|4253011_4254754_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
WP_000874698.1\|4254753_4255323_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
WP_001279030.1\|4255457_4256645_+\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_001207676.1\|4256660_4257179_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
WP_001029727.1\|4257241_4257577_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_085984508.1\|4257573_4257729_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_000069524.1\|4257721_4260163_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
WP_000978869.1\|4260174_4260660_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
WP_000627818.1\|4260656_4261826_+	phage late control D family protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
WP_000468311.1\|4261903_4262122_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_000933379.1\|4262156_4262573_-	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
WP_001077320.1\|4262859_4263762_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4262735:4262781	attR	NA	NA	NA	NA
WP_000591793.1\|4263946_4264909_+	6-phosphofructokinase	NA	NA	NA	NA
WP_000758711.1\|4265112_4266102_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000750762.1\|4266202_4266958_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000777320.1\|4267220_4268555_+	MFS transporter	NA	NA	NA	NA
WP_000646510.1\|4268565_4269525_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000557881.1\|4269534_4270575_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_001519915.1\|4270637_4271360_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001173080.1\|4271858_4272209_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000113085.1\|4272222_4273815_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_001283049.1\|4273901_4274861_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001167248.1\|4275116_4276652_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_000911133.1\|4276645_4277689_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000981826.1\|4277685_4278687_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000090737.1\|4278715_4279738_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774146.1\|4279766_4280642_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_001543603.1\|4280724_4281015_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001088053.1\|4281024_4281789_+	epimerase	NA	NA	NA	NA
WP_001216339.1\|4281880_4282648_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802242.1\|4282760_4283357_-	YiiQ family protein	NA	NA	NA	NA
WP_000155229.1\|4283457_4283886_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000796293.1\|4283991_4284738_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250617.1\|4284834_4285845_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136809.1\|4285956_4287465_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084285.1\|4287485_4288331_-	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000051370.1\|4288729_4288969_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872918.1\|4289190_4289676_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000139637.1\|4289768_4290698_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293360.1\|4290764_4292096_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000208240.1\|4292105_4292636_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_9

4411351 : 4456127

Burkholderia_phage(40.91%)

tRNA,plate,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001177098.1\|4411351_4411867_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7
WP_000368212.1\|4411876_4413358_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.6e-52	52.7
WP_000359503.1\|4413360_4413993_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000951728.1\|4413985_4415101_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
WP_001093501.1\|4415091_4415451_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000632052.1\|4415614_4417162_-	hypothetical protein	B9UDL6	Salmonella_phage	1.6e-50	30.4
WP_000703634.1\|4417161_4418091_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	6.7e-150	83.8
WP_000593184.1\|4418087_4418450_-	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000679396.1\|4418773_4419496_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
WP_000818152.1\|4419505_4420549_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
WP_001269716.1\|4420536_4420746_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271429.1\|4420745_4421699_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262484.1\|4421698_4424053_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
WP_001185656.1\|4424149_4424278_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003640.1\|4424237_4424555_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907495.1\|4424606_4425131_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729849.1\|4425130_4426558_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
WP_000875314.1\|4426547_4426745_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4426741_4427197_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|4427356_4427671_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|4427683_4428289_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|4428291_4428579_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4429156_4429504_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_000136394.1\|4429634_4430984_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790036.1\|4431328_4432978_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|4433421_4433664_+	outer membrane protein	NA	NA	NA	NA
WP_122821798.1\|4433697_4434366_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977959.1\|4434362_4435100_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000750806.1\|4435099_4437196_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982749.1\|4437338_4437749_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252081.1\|4437914_4438805_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382575.1\|4438819_4440364_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695415.1\|4440495_4441686_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179176.1\|4442047_4443157_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973678.1\|4443245_4444604_+	maltoporin	NA	NA	NA	NA
WP_000782497.1\|4444767_4445685_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019230.1\|4445865_4446363_+	chorismate lyase	NA	NA	NA	NA
WP_000455249.1\|4446376_4447249_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017360.1\|4447347_4449768_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4449938_4450307_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4450415_4451024_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001128103.1\|4451202_4452528_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001575282.1\|4452524_4452638_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4452659_4452869_+	CsbD family protein	NA	NA	NA	NA
WP_000416272.1\|4452968_4453484_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001039337.1\|4453730_4455041_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_001182228.1\|4455128_4456127_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

70780 : 133402

Salmonella_phage(20.0%)

integrase,transposase

attL 122780:122795|attR 141264:141279

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000608644.1\|70780_72043_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000976514.1\|72366_73512_+	class C beta-lactamase CMY-2	NA	NA	NA	NA
WP_001221666.1\|73605_74139_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
WP_000118520.1\|74135_74453_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_000606835.1\|75180_80667_+	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_001259346.1\|80815_81523_+	DsbC family protein	NA	NA	NA	NA
WP_000637384.1\|81519_83967_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_000351984.1\|83981_84299_+	hypothetical protein	NA	NA	NA	NA
WP_001010740.1\|84295_84826_+	S26 family signal peptidase	NA	NA	NA	NA
WP_001447719.1\|84788_86054_+	conjugal transfer protein TraW	NA	NA	NA	NA
WP_000575345.1\|86050_86722_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000983282.1\|86718_87726_+	TraU family protein	NA	NA	NA	NA
WP_001447718.1\|87829_90637_+	conjugal transfer mating pair stabilization protein TraN	NA	NA	NA	NA
WP_000709517.1\|90675_91536_-	hypothetical protein	NA	NA	NA	NA
WP_000796664.1\|91658_92300_-	hypothetical protein	NA	NA	NA	NA
WP_000547566.1\|92594_92915_+	hypothetical protein	NA	NA	NA	NA
WP_001186917.1\|93218_93404_+	hypothetical protein	NA	NA	NA	NA
WP_000085160.1\|93623_94592_+	CbbQ/NirQ/NorQ C-terminal domain-containing protein	L7TKP0	Rhizobium_phage	1.2e-29	32.6
WP_000739139.1\|94602_95511_+	hypothetical protein	NA	NA	NA	NA
WP_000987165.1\|95571_96102_+	single-stranded DNA-binding protein	A0A291LCB6	Klebsiella_phage	2.6e-42	71.8
WP_001282585.1\|96196_97186_+	phage recombination protein Bet	B5AX97	Iodobacteriophage	1.1e-52	39.6
WP_000706865.1\|97248_98259_+	YqaJ viral recombinase family protein	E0YQ48	Mycobacterium_phage	5.6e-09	28.7
WP_000170087.1\|98458_99736_+	DUF3150 domain-containing protein	NA	NA	NA	NA
WP_000039319.1\|99820_101617_+	VWA domain-containing protein	NA	NA	NA	NA
WP_001447572.1\|101678_102014_+	hypothetical protein	NA	NA	NA	NA
WP_000018872.1\|102278_102818_+	hypothetical protein	NA	NA	NA	NA
WP_000793769.1\|102908_103409_+	hypothetical protein	NA	NA	NA	NA
WP_000477209.1\|103482_104367_+	hypothetical protein	NA	NA	NA	NA
WP_001102700.1\|104432_104657_+	2Fe-2S ferredoxin-like protein	NA	NA	NA	NA
WP_000026577.1\|104718_105108_+	hypothetical protein	NA	NA	NA	NA
WP_001176699.1\|105097_105550_+	hypothetical protein	NA	NA	NA	NA
WP_000651508.1\|105887_106079_+	hypothetical protein	NA	NA	NA	NA
WP_001337696.1\|106123_106501_+	hypothetical protein	NA	NA	NA	NA
WP_000209093.1\|106692_107037_+	hypothetical protein	NA	NA	NA	NA
WP_000410925.1\|107114_107417_+	hypothetical protein	NA	NA	NA	NA
WP_000201432.1\|107494_109120_+	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	1.2e-05	25.8
WP_000687894.1\|109180_109612_+	hypothetical protein	NA	NA	NA	NA
WP_001093867.1\|109685_110240_+	hypothetical protein	NA	NA	NA	NA
WP_000042274.1\|110472_110859_+	hypothetical protein	NA	NA	NA	NA
WP_001187969.1\|110946_113400_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_000050847.1\|113601_113805_+	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|113876_114482_+	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000184110.1\|114474_114744_+	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|114757_114976_+	hypothetical protein	NA	NA	NA	NA
WP_000064432.1\|115049_115607_+	hypothetical protein	NA	NA	NA	NA
WP_000595210.1\|115681_116533_+	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_001077336.1\|116991_117378_+	hypothetical protein	NA	NA	NA	NA
WP_000122922.1\|117555_119283_+	toprim domain-containing protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
WP_000268337.1\|119269_119548_+	hypothetical protein	NA	NA	NA	NA
WP_000714163.1\|119620_119842_+	hypothetical protein	NA	NA	NA	NA
WP_000427619.1\|120023_121028_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001138073.1\|121106_124079_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
122780:122795	attL	NA	NA	NA	NA
WP_001162012.1\|124081_124639_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_000845054.1\|124944_125958_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_024131607.1\|126103_126895_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA25	NA	NA	NA	NA
WP_000131886.1\|127061_127961_+	aminoglycoside N-acetyltransferase AAC(3)-VIa	NA	NA	NA	NA
WP_000535481.1\|128167_128488_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.0e-17	47.9
WP_000719078.1\|128543_130181_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.8e-174	60.6
WP_001137772.1\|130369_131899_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001137513.1\|132166_133402_+\|transposase	IS256-like element ISEc58 family transposase	A0A218MNI5	uncultured_virus	2.8e-42	42.8
141264:141279	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011080

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection