CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_011990	Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence	0 crisprs	NA	0
NC_011985	Agrobacterium radiobacter K84 chromosome 1, complete sequence	0 crisprs	WYL,cas3,csa3	2
NC_011983	Agrobacterium radiobacter K84 chromosome 2, complete sequence	0 crisprs	DEDDh,RT,csa3,WYL	1
NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	0 crisprs	NA	0
NC_011994	Agrobacterium radiobacter K84 plasmid pAgK84, complete sequence	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1675275 : 1688852

uncultured_Mediterranean_phage(90.91%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012651308.1\|1675275_1676289_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.5e-25	43.4
WP_007690950.1\|1676312_1677164_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.3e-34	36.8
WP_012651309.1\|1677199_1677889_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-39	46.5
WP_007690954.1\|1678139_1678349_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.8e-08	67.4
WP_012651310.1\|1678404_1679091_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_007690958.1\|1679087_1679915_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	4.4e-44	42.4
WP_012651311.1\|1680015_1681299_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	46.3
WP_012651312.1\|1681315_1682089_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	29.4
WP_007690964.1\|1682085_1682739_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-15	35.4
WP_012651313.1\|1682909_1684628_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	2.2e-13	33.3
WP_012651314.1\|1684706_1685582_-	ATP-binding protein	NA	NA	NA	NA
WP_007690971.1\|1685785_1686136_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.1e-11	38.0
WP_012651315.1\|1686305_1688852_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.3e-56	46.6

DBSCAN-SWA_2

1756574 : 1831800

Rhizobium_phage(25.0%)

capsid,tRNA,tail,head,terminase,portal,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012651361.1\|1756574_1758248_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_007693425.1\|1758446_1760780_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012651362.1\|1760830_1761898_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007693429.1\|1761890_1762364_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_007693431.1\|1762360_1763176_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_012651363.1\|1763177_1764059_+	LpxI family protein	NA	NA	NA	NA
WP_012651364.1\|1764055_1765237_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_007693439.1\|1765266_1766556_-	citrate (Si)-synthase	NA	NA	NA	NA
WP_007693442.1\|1769282_1770005_-	transcriptional repressor LexA	A0A1B2APZ3	Phage_Wrath	1.4e-09	36.8
WP_012651365.1\|1770409_1771297_+	VOC family protein	NA	NA	NA	NA
WP_012651366.1\|1771293_1772133_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.4e-47	40.4
WP_012651367.1\|1772283_1773558_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	9.9e-144	62.6
WP_012651368.1\|1773800_1774112_+	septum formation initiator family protein	NA	NA	NA	NA
WP_007693451.1\|1774269_1775313_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_012651369.1\|1775331_1776708_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_012651370.1\|1776723_1778061_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_012651371.1\|1778086_1778728_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012651372.1\|1778782_1780228_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_007693459.1\|1780283_1780541_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_007693461.1\|1780554_1780803_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_012651373.1\|1780839_1781811_+	lipoyl synthase	NA	NA	NA	NA
WP_012651374.1\|1781952_1782552_+	ATPase AAA	A0A097BYE2	Leuconostoc_phage	3.2e-28	34.4
WP_012651375.1\|1782603_1783170_+	ATPase AAA	A0A097BYE2	Leuconostoc_phage	7.7e-24	32.9
WP_041722509.1\|1783179_1783623_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_012651377.1\|1783613_1784114_-	CinA family protein	B5TK85	Pseudomonas_phage	1.5e-23	46.2
WP_012651378.1\|1784110_1785331_-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_012651379.1\|1785553_1786582_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_007693476.1\|1786578_1787736_+	nitrogen regulation protein NR(II)	W8CYF6	Bacillus_phage	4.6e-07	24.7
WP_007693477.1\|1787732_1789184_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_012651380.1\|1789467_1791741_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.8e-08	22.8
WP_007693479.1\|1791730_1793095_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012651381.1\|1793170_1794034_+	D-amino-acid transaminase	NA	NA	NA	NA
WP_007693481.1\|1794141_1794384_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_007693483.1\|1794462_1795794_+	GTPase HflX	NA	NA	NA	NA
WP_012651382.1\|1795814_1796651_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_012651383.1\|1796676_1797264_-	nucleoside deaminase	NA	NA	NA	NA
WP_012651384.1\|1797559_1798996_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_007693487.1\|1799000_1799315_+	DUF2849 domain-containing protein	NA	NA	NA	NA
WP_012651385.1\|1799334_1801008_+	nitrite/sulfite reductase	NA	NA	NA	NA
WP_012651386.1\|1801018_1801531_+	DUF934 domain-containing protein	NA	NA	NA	NA
WP_007693490.1\|1801771_1802584_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_041722512.1\|1802639_1803254_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_041722515.1\|1803431_1803638_-	hypothetical protein	NA	NA	NA	NA
WP_007693493.1\|1803801_1804050_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_041722516.1\|1804697_1804931_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012651389.1\|1805025_1805454_+	hypothetical protein	NA	NA	NA	NA
WP_012651390.1\|1805457_1805730_+	hypothetical protein	NA	NA	NA	NA
WP_151210615.1\|1805974_1808059_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_012651392.1\|1808380_1808593_+	hypothetical protein	NA	NA	NA	NA
WP_012651393.1\|1808589_1809648_+	hypothetical protein	NA	NA	NA	NA
WP_151210591.1\|1809763_1810453_-	hypothetical protein	NA	NA	NA	NA
WP_012651395.1\|1811273_1811660_+	hypothetical protein	A0A0U2C0X7	Paracoccus_phage	7.4e-10	37.0
WP_151210592.1\|1811625_1813530_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.3e-159	49.4
WP_012651397.1\|1813529_1814786_+\|portal	phage portal protein	B4UTP1	Rhizobium_phage	4.6e-170	76.1
WP_012651398.1\|1814782_1815394_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	9.2e-47	61.1
WP_012651399.1\|1815486_1816767_+\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	8.6e-172	72.5
WP_041722519.1\|1816813_1817047_+	hypothetical protein	B4UTP6	Rhizobium_phage	2.1e-20	72.2
WP_041722521.1\|1817006_1817552_+\|head,tail	phage head-tail connector protein	B4UTP7	Rhizobium_phage	3.5e-66	64.4
WP_151210593.1\|1817557_1817752_+	hypothetical protein	NA	NA	NA	NA
WP_012651401.1\|1817761_1817920_+	hypothetical protein	NA	NA	NA	NA
WP_041722525.1\|1817920_1818205_-	hypothetical protein	NA	NA	NA	NA
WP_041722527.1\|1818316_1818673_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	6.1e-11	37.0
WP_187152332.1\|1818669_1818840_+	hypothetical protein	NA	NA	NA	NA
WP_012651403.1\|1818839_1819271_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012651404.1\|1819274_1819685_+	DUF3168 domain-containing protein	I3UM06	Rhodobacter_phage	8.7e-09	33.6
WP_012651405.1\|1819727_1820159_+\|tail	phage tail protein	I3UM07	Rhodobacter_phage	2.0e-19	37.1
WP_012651406.1\|1820162_1820546_+	hypothetical protein	NA	NA	NA	NA
WP_012651407.1\|1820578_1820749_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_041723007.1\|1820893_1824181_+	M15 family metallopeptidase	A0A2H4GY14	Pseudomonas_phage	5.9e-31	45.2
WP_012651409.1\|1824183_1824936_+	hypothetical protein	A0A076GD29	Sinorhizobium_phage	9.8e-59	50.4
WP_012651410.1\|1825027_1825627_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	2.3e-79	72.9
WP_151210594.1\|1825641_1825989_-	hypothetical protein	NA	NA	NA	NA
WP_012651412.1\|1826048_1826456_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	2.0e-42	58.0
WP_041723008.1\|1826479_1829068_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	2.0e-236	62.5
WP_151210595.1\|1829130_1831800_+	SGNH/GDSL hydrolase family protein	I1VX96	Halocynthia_phage	1.1e-14	26.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_011983

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

639022 : 708554

Bacillus_virus(15.38%)

transposase,integrase,coat

attL 644865:644879|attR 711562:711576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012649494.1\|639022_639970_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012649495.1\|639985_642400_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012649496.1\|642371_643091_-	molecular chaperone	NA	NA	NA	NA
WP_012649497.1\|643112_643610_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_012649498.1\|644105_646667_+	GcvT family protein	NA	NA	NA	NA
644865:644879	attL	NA	NA	NA	NA
WP_012649499.1\|646774_647275_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012649500.1\|647294_648188_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_012649501.1\|648193_649084_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_012649502.1\|649080_650181_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-24	32.9
WP_012649503.1\|650295_651552_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_034522229.1\|651759_652512_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012649505.1\|652559_653591_-	glycoside hydrolase family 25 protein	A0A1U9WQS3	Geobacillus_phage	3.6e-27	33.2
WP_007690404.1\|653771_654959_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	2.3e-46	31.7
WP_012649506.1\|655039_656761_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-06	29.5
WP_012649507.1\|656768_657890_-	ABC transporter permease	NA	NA	NA	NA
WP_007690398.1\|657899_658886_-	ABC transporter permease	NA	NA	NA	NA
WP_012649508.1\|659015_660956_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007690393.1\|661169_661883_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_012649510.1\|661981_662881_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_012649511.1\|662959_664546_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_153510648.1\|664597_665650_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_012649513.1\|665655_666591_+	ABC transporter permease	NA	NA	NA	NA
WP_012649514.1\|666587_667445_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_012649515.1\|667441_668200_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.7e-23	33.3
WP_012649516.1\|668589_669378_-	Myo-inositol-monophosphatase	NA	NA	NA	NA
WP_041723262.1\|669377_670250_-	glycerophosphodiester phosphodiesterase family protein	M1ICP4	Paramecium_bursaria_Chlorella_virus	1.2e-07	30.6
WP_161990908.1\|670473_671586_+	ROK family transcriptional regulator	NA	NA	NA	NA
WP_012649519.1\|671616_673704_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_007691446.1\|674037_674838_-	EF-hand domain-containing protein	NA	NA	NA	NA
WP_012649521.1\|675368_676508_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012649522.1\|676624_677428_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_007691449.1\|677495_677903_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_165586804.1\|678065_678227_-	hypothetical protein	NA	NA	NA	NA
WP_012649524.1\|678315_679152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012649525.1\|679207_679441_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_012649526.1\|679535_681380_-	Cache 3/Cache 2 fusion domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-10	32.7
WP_041723264.1\|681464_682463_-	ABC transporter permease	NA	NA	NA	NA
WP_012649528.1\|682465_683488_-	ABC transporter permease	NA	NA	NA	NA
WP_012649529.1\|683477_685028_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-14	27.1
WP_034522204.1\|685084_686092_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007691466.1\|686266_686545_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_012649532.1\|687019_688357_+	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	8.5e-37	30.8
WP_012649533.1\|688486_689155_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_034522199.1\|689277_690147_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_012649536.1\|690750_691749_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.5e-49	36.7
WP_049783238.1\|693202_693739_+	helix-turn-helix transcriptional regulator	K4JNA7	Caulobacter_virus	1.2e-10	33.3
WP_012649540.1\|693875_694580_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_041723267.1\|695020_695998_+	3'-5' exonuclease	M1I8M0	Bacillus_virus	9.3e-09	28.7
WP_034522605.1\|697097_697334_+	hypothetical protein	NA	NA	NA	NA
WP_012649544.1\|697684_699721_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-13	34.9
WP_034522191.1\|700844_701267_+	DUF4168 domain-containing protein	NA	NA	NA	NA
WP_012649546.1\|701526_702648_-	Fic family protein	NA	NA	NA	NA
WP_012649547.1\|702812_703994_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012649548.1\|703990_704395_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_041723271.1\|704391_704649_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_012649549.1\|705147_706041_-	TniQ family protein	NA	NA	NA	NA
WP_012649550.1\|706037_706922_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_041723672.1\|706922_708554_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
711562:711576	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011985

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_011983

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection