CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_009433	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05, complete sequence	0 crisprs	NA	0	0	1
NC_009428	Rhodobacter sphaeroides ATCC 17025, complete genome	3 crisprs	DEDDh,cas3,RT,csa3	1	1	10
NC_009432	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04, complete sequence	0 crisprs	NA	0	0	0
NC_009431	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence	0 crisprs	NA	0	0	1
NC_009429	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	0 crisprs	DEDDh,WYL,cas2,csa3	0	0	2
NC_009430	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	0 crisprs	NA	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

327348 : 448267

Leptospira_phage(16.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011910385.1\|327348_327654_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011910387.1\|328602_329820_-	chromate efflux transporter	NA	NA	NA	NA
WP_011910388.1\|329833_330040_-	DUF190 domain-containing protein	NA	NA	NA	NA
WP_011910389.1\|330042_330453_-	hypothetical protein	A0A2H4J148	uncultured_Caudovirales_phage	1.8e-06	37.5
WP_011910390.1\|330454_330859_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_011910391.1\|331332_332373_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_044249223.1\|332480_332663_+	hypothetical protein	NA	NA	NA	NA
WP_044249225.1\|332667_333219_+	hypothetical protein	NA	NA	NA	NA
WP_011910393.1\|333462_335268_+	amidohydrolase	NA	NA	NA	NA
WP_011910394.1\|336035_337526_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.2e-170	65.9
WP_011910395.1\|337537_338383_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.2e-50	40.6
WP_011910396.1\|338692_339370_-	NYN domain-containing protein	NA	NA	NA	NA
WP_011910397.1\|339711_340788_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_152334814.1\|340817_342059_-	MFS transporter	NA	NA	NA	NA
WP_011910399.1\|342042_345096_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.4e-34	19.2
WP_011910400.1\|345092_346178_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011910401.1\|346174_346897_-	hypothetical protein	NA	NA	NA	NA
WP_011910403.1\|347675_349478_+	SLC13 family permease	Q6A201	Oenococcus_phage	5.0e-16	32.5
WP_044249232.1\|351514_352798_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.4e-12	36.1
WP_011910409.1\|353922_355131_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.5e-35	32.0
WP_152334815.1\|356197_356662_-\|transposase	transposase	NA	NA	NA	NA
WP_011910412.1\|357084_360924_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	6.2e-40	28.2
WP_011910413.1\|360916_361480_-	YdcF family protein	NA	NA	NA	NA
WP_011910414.1\|361893_363252_-	GntP family permease	NA	NA	NA	NA
WP_011910415.1\|363812_364685_+	EamA family transporter	NA	NA	NA	NA
WP_011910416.1\|365060_365333_-	hypothetical protein	NA	NA	NA	NA
WP_011910419.1\|367419_368151_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011910420.1\|368327_368567_+	hypothetical protein	NA	NA	NA	NA
WP_152334816.1\|368690_369467_-	sensor histidine kinase	NA	NA	NA	NA
WP_085996635.1\|370051_378379_+	glycosyl transferase	NA	NA	NA	NA
WP_044249235.1\|378437_378710_+	hypothetical protein	NA	NA	NA	NA
WP_044249237.1\|378715_379033_+	hypothetical protein	NA	NA	NA	NA
WP_146172353.1\|379599_379944_-	hypothetical protein	NA	NA	NA	NA
WP_044249243.1\|379940_380333_-	hypothetical protein	NA	NA	NA	NA
WP_011910425.1\|381872_382475_-	AAA family ATPase	A0A097BYE2	Leuconostoc_phage	2.2e-32	37.7
WP_011907378.1\|382699_383512_-	ATPase AAA	A0A059NT77	Lactococcus_phage	1.2e-33	36.0
WP_080517471.1\|385123_385573_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	3.0e-31	51.2
WP_011910429.1\|387141_387645_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.4e-16	41.9
WP_011910430.1\|387644_387932_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_152334817.1\|387952_388309_+	DUF2382 domain-containing protein	NA	NA	NA	NA
WP_044247894.1\|388375_388780_+\|transposase	transposase	NA	NA	NA	NA
WP_080517472.1\|388776_388995_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011910433.1\|389261_390314_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011910435.1\|391745_392123_-	response regulator	NA	NA	NA	NA
WP_080517473.1\|392188_394003_-	PAS domain-containing protein	NA	NA	NA	NA
WP_080517474.1\|393704_395714_-	hypothetical protein	NA	NA	NA	NA
WP_011910438.1\|397869_398787_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011910439.1\|398926_401188_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	2.7e-285	65.3
WP_011907238.1\|401866_403438_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011907237.1\|403506_403860_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085996597.1\|403856_404156_-\|transposase	transposase	NA	NA	NA	NA
WP_011908822.1\|405243_406527_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.4e-12	36.1
WP_152334840.1\|406492_406999_+\|transposase	transposase	S5WIU1	Leptospira_phage	5.0e-14	46.3
WP_044249253.1\|407127_407784_-	HNH endonuclease	NA	NA	NA	NA
WP_080517476.1\|407776_408946_-	ATP-binding protein	NA	NA	NA	NA
WP_011910447.1\|409688_411662_+	AAA family ATPase	NA	NA	NA	NA
WP_011910448.1\|411658_413512_+	ATP-dependent helicase	NA	NA	NA	NA
WP_011910449.1\|414018_414855_-	abortive infection family protein	NA	NA	NA	NA
WP_011910450.1\|415444_417355_-	hypothetical protein	NA	NA	NA	NA
WP_044249255.1\|417461_417932_-	hypothetical protein	NA	NA	NA	NA
WP_152334841.1\|418587_421374_+	DUF3427 domain-containing protein	A0A2I5ARD8	Synechococcus_phage	1.3e-39	34.5
WP_152334818.1\|421285_421555_-	hypothetical protein	NA	NA	NA	NA
WP_011910455.1\|422545_423991_-	type I restriction-modification system subunit M	J7I0U9	Acinetobacter_phage	5.8e-23	30.8
WP_011910456.1\|423996_426444_-	DEAD/DEAH box helicase	Q6NDX2	Leptospira_phage	4.5e-20	27.1
WP_011910457.1\|427152_428511_+	hypothetical protein	NA	NA	NA	NA
WP_011910458.1\|428597_429458_+	exonuclease	NA	NA	NA	NA
WP_011910459.1\|429640_430489_+\|transposase	transposase	A0A0R6PHP9	Moraxella_phage	1.5e-47	41.5
WP_080517477.1\|431668_431890_+	hypothetical protein	NA	NA	NA	NA
WP_011910461.1\|432257_432692_-	hypothetical protein	NA	NA	NA	NA
WP_011910463.1\|433003_433243_+	hypothetical protein	NA	NA	NA	NA
WP_052292687.1\|433617_433914_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	3.0e-11	51.2
WP_011910466.1\|436774_437269_-	cupin domain-containing protein	NA	NA	NA	NA
WP_044249521.1\|437540_437891_+	hypothetical protein	NA	NA	NA	NA
WP_011910468.1\|438079_439207_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.2e-21	31.7
WP_011910469.1\|439203_440109_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_011910470.1\|440108_440921_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011910471.1\|440942_442226_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011910472.1\|442293_443094_+	phosphodiesterase	NA	NA	NA	NA
WP_011910473.1\|443125_443710_+	hypothetical protein	NA	NA	NA	NA
WP_011908822.1\|445337_446621_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.4e-12	36.1
WP_152334842.1\|446586_447093_+\|transposase	transposase	S5WIU1	Leptospira_phage	8.5e-14	45.1
WP_011910475.1\|447148_447373_+\|transposase	transposase	NA	NA	NA	NA
WP_011910476.1\|447448_448267_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.2e-63	45.8

DBSCAN-SWA_2

600655 : 675530

Stx2-converting_phage(29.17%)

protease,integrase,transposase

attL 669735:669794|attR 693533:693718

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011910610.1\|600655_601006_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-27	52.3
WP_044249316.1\|601063_602623_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.8e-105	44.4
WP_080517452.1\|602684_603707_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011910612.1\|603986_604589_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	5.7e-17	38.8
WP_080517481.1\|604540_604765_+\|transposase	transposase	NA	NA	NA	NA
WP_152334826.1\|604748_605855_-	hypothetical protein	NA	NA	NA	NA
WP_011910615.1\|605943_606363_+	hypothetical protein	G8DH50	Emiliania_huxleyi_virus	4.8e-39	60.0
WP_011910616.1\|606387_607326_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	5.1e-97	58.3
WP_011910617.1\|607337_607775_+	hypothetical protein	G8DH52	Emiliania_huxleyi_virus	1.2e-11	37.9
WP_011910618.1\|608029_610492_+	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	1.6e-49	53.0
WP_011910619.1\|610491_611118_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.1e-58	54.6
WP_011910620.1\|611130_611421_+	hypothetical protein	NA	NA	NA	NA
WP_011910621.1\|611441_612092_+	lysozyme	F8TV87	EBPR_siphovirus	3.0e-40	47.8
WP_044249324.1\|612088_612298_+	hypothetical protein	NA	NA	NA	NA
WP_011910622.1\|612294_613179_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	1.4e-67	45.0
WP_011910623.1\|613175_613622_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.5e-27	48.1
WP_011907238.1\|617042_618614_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011907237.1\|618682_619036_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085996597.1\|619032_619332_-\|transposase	transposase	NA	NA	NA	NA
WP_085996597.1\|621640_621940_+\|transposase	transposase	NA	NA	NA	NA
WP_011907237.1\|621936_622290_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011907238.1\|622358_623930_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011910628.1\|624319_625903_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.7e-92	40.2
WP_011910629.1\|625955_626309_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-18	52.9
WP_011910632.1\|627474_628449_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011910633.1\|628474_630586_-\|protease	BREX system Lon protease-like protein BrxL	NA	NA	NA	NA
WP_011910634.1\|630597_633105_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_011910635.1\|633097_636622_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_011910636.1\|636621_637122_-	hypothetical protein	NA	NA	NA	NA
WP_044249327.1\|637118_638306_-	AAA family ATPase	NA	NA	NA	NA
WP_011910638.1\|641829_642432_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_011910639.1\|642428_643049_-	DUF1819 family protein	NA	NA	NA	NA
WP_011910640.1\|643045_643918_-	WYL domain-containing protein	NA	NA	NA	NA
WP_011910641.1\|644039_645194_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	7.8e-47	36.5
WP_011910642.1\|645334_646852_+	hypothetical protein	NA	NA	NA	NA
WP_011908457.1\|647276_648923_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_011907123.1\|649648_650608_+\|transposase	IS481 family transposase	A0A126QCH6	Murine_leukemia_virus	8.0e-05	31.2
WP_011910643.1\|650939_651596_+	hypothetical protein	NA	NA	NA	NA
WP_152334848.1\|651595_652267_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_011910645.1\|652277_653222_+	DUF429 domain-containing protein	NA	NA	NA	NA
WP_011910646.1\|653389_654355_-	helicase	A0A0H5AWB1	Pseudomonas_phage	3.1e-41	35.5
WP_080517482.1\|654357_655140_-	hypothetical protein	F1C598	Cronobacter_phage	1.9e-36	38.6
WP_152334827.1\|655911_656583_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011910650.1\|656597_658247_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.3e-31	30.5
WP_085996639.1\|658918_659425_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_044249334.1\|659441_659888_-	hypothetical protein	NA	NA	NA	NA
WP_011910653.1\|659891_660611_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.1e-25	35.0
WP_011910654.1\|660621_661488_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_011910655.1\|661491_662325_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_044249337.1\|662324_663332_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011910657.1\|663433_663697_-	hypothetical protein	NA	NA	NA	NA
WP_011910658.1\|664142_664619_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_085996597.1\|665166_665466_+\|transposase	transposase	NA	NA	NA	NA
WP_011907237.1\|665462_665816_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011907238.1\|665884_667456_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_152334828.1\|668417_669881_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.9e-38	43.9
669735:669794	attL	NA	NA	NA	NA
WP_044249570.1\|670571_671480_-	hypothetical protein	NA	NA	NA	NA
WP_011910665.1\|671904_672090_+	hypothetical protein	NA	NA	NA	NA
WP_011910666.1\|672154_672496_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_152334849.1\|672648_672771_+	hypothetical protein	NA	NA	NA	NA
WP_044249341.1\|672857_673238_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	5.2e-08	32.8
WP_152334829.1\|674953_675253_-\|transposase	transposase	NA	NA	NA	NA
WP_152334850.1\|675170_675530_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
693533:693718	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009433

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

143 : 7366

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011911245.1\|143_824_-	DNA-processing protein DprA	S6BFL3	Thermus_phage	1.2e-31	41.9
WP_152334897.1\|1345_1606_-	hypothetical protein	NA	NA	NA	NA
WP_152334898.1\|1607_1904_-	hypothetical protein	NA	NA	NA	NA
WP_085996643.1\|2185_3410_+\|transposase	IS3-like element ISRhsp2 family transposase	A0A1B0Z042	Pseudomonas_phage	3.4e-69	50.0
WP_044249966.1\|3651_4311_+	recombinase family protein	A0A2I7REZ1	Vibrio_phage	3.1e-40	42.2
WP_011911247.1\|4365_4674_+	hypothetical protein	NA	NA	NA	NA
WP_011910612.1\|4760_5363_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	5.7e-17	38.8
WP_044249971.1\|5359_6958_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.4e-107	44.3
WP_011910610.1\|7015_7366_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-27	52.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_009428

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009428_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009428_1

132429-132509

Orphan

Consensus_repeat	Method
GCCGCATCTCCCCCGCATCTCCCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009428_1

>merge|NC_009428|1|132429-132509|CRISPRCasFinder
GCCGCATCTCCCCCGCATCTCCCCCGCATCTCCTAAAATCGGGTCCGCAACTCCCCCGCATCTCCCCCGCGCCTCGGCCGC

>NC_009428|1|1|132429-132509|CRISPRCasFinder
GCCGCATCTCCCCCGCATCTCCCCCGC	ATCTCCTAAAATCGGGTCCGCAACTCC
CCCGCATCTCCCCCGCGCCTCGGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009428.1\|WP_044247653.1\|124941_126126_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_009428.1\|WP_044248493.1\|130973_131261_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011907188.1\|123427_124780_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NC_009428.1\|WP_011907195.1\|131257_132427_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226126
NC_009428.1\|WP_011907200.1\|135922_136189_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226147
NC_009428.1\|WP_011907192.1\|127677_128550_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NC_009428.1\|WP_011907190.1\|126133_126982_-\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_009428.1\|WP_011907198.1\|133388_133880_+\|DNA-packaging-protein	unknown	unknown	gnl\|CDD\|226673
NC_009428.1\|WP_044247661.1\|132827_133103_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_044247652.1\|120532_122800_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NC_009428.1\|WP_044247658.1\|128701_130672_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_009428.1\|WP_011907202.1\|136479_136839_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011907201.1\|136247_136490_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011907203.1\|136933_137458_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011907205.1\|138782_140543_+\|peptidase-U35	unknown	unknown	gnl\|CDD\|309640
NC_009428.1\|WP_011907191.1\|127074_127548_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_009428.1\|WP_011907187.1\|123061_123400_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NC_009428.1\|WP_044247664.1\|133105_133294_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011907204.1\|137454_138786_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NC_009428.1\|WP_011907199.1\|133866_135645_+\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|368649

Protein	Function_ID	Function_description	E-value
NC_009428.1\|WP_044247653.1\|124941_126126_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_009428.1\|WP_011907188.1\|123427_124780_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.5582e-162
NC_009428.1\|WP_011907195.1\|131257_132427_+\|AAA-family-ATPase	gnl\|CDD\|226126	COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair].	1.10078e-43
NC_009428.1\|WP_011907200.1\|135922_136189_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226147	COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription].	7.56997e-06
NC_009428.1\|WP_011907192.1\|127677_128550_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	7.58231e-178
NC_009428.1\|WP_011907190.1\|126133_126982_-\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	9.79597e-108
NC_009428.1\|WP_011907198.1\|133388_133880_+\|DNA-packaging-protein	gnl\|CDD\|226673	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair].	9.16364e-18
NC_009428.1\|WP_044247652.1\|120532_122800_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_009428.1\|WP_044247658.1\|128701_130672_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.41611e-61
NC_009428.1\|WP_011907205.1\|138782_140543_+\|peptidase-U35	gnl\|CDD\|309640	pfam04586, Peptidase_S78, Caudovirus prohead serine protease. Family of Caudovirus prohead serine proteases also found in a number of bacteria possibly as the result of horizontal transfer.	1.04701e-05
NC_009428.1\|WP_011907191.1\|127074_127548_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	7.52775e-79
NC_009428.1\|WP_011907187.1\|123061_123400_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	2.51951e-50
NC_009428.1\|WP_011907204.1\|137454_138786_+\|phage-portal-protein	gnl\|CDD\|377468	pfam05136, Phage_portal_2, Phage portal protein, lambda family. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage capsid and the tail proteins.	1.03884e-74
NC_009428.1\|WP_011907199.1\|133866_135645_+\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|368649	pfam05876, Terminase_GpA, Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.	0

>NC_009428.1|WP_011907195.1|131257_132427_+|AAA-family-ATPase
MTDDPFDGIEPETLPNVTRLDEFRNRPRPTGKAAPSPKRASRFFSAATLEGKPVPPRQWLVDDLVPARNVTLLYGDGGVGKSLVALQLAAAVALGRPWLGRPTVSGHAIFMSAEDDADELHRRLQDITQAEGVTLADLDRLTIRSLAGEDALLAILDPRSGVLHPSDLYRELDAYLEAEQPAVAVLDTLADLFPGNEIIRAQARQFIGMMRALAIRHDCTVVLLAHPSLSGLQSGSGTSGSTAWNNSVRSRLYLERVMRDDREDNPDARVLTNKKQNYGRTGDEIALTWRDGVFVADAPEPGLDRTARRSKAMRKFMELLRKLDQEGRDVNARSGPNYAPSVFADHPDAEGITKVAFREAMNLLFSEGAIRNAQIKRDGKLATVIQEAE
>NC_009428.1|WP_044248493.1|130973_131261_+|hypothetical-protein
MTEELLRLSAGTPQHDVFGLVREDARWWASVASPAELVEYMAAAMRAVLNGRTALCLEHRKRLMAEIWRSLPEADRHSFLRRADPSGAFRSGSAQ
>NC_009428.1|WP_044247658.1|128701_130672_+|transglycosylase-SLT-domain-containing-protein
MSRPTSAPARLRTLHLVACLILPLICAPLPARAEDPGALRLALRAAWSRDWSDAAAQARVAGPLAQSLVEWHRLRAGEGLLGDYEGFLARHPDWPGLKLLQDKGEEAVARSSTPARVIDYFGSRTPATAQGALALARALAESSRRPEAEAVIRRAWTTLAFTAEEESAAIAAFPDVLAQAHEARLDMLLWENRPDQARRMLPRVPDGWKRLAAARLALRADADGVDALIAAVPAALSSDPGLAYERFLWRARKGRTADAVALLIERSESVAGLGSPSLWSGRRAGLARAMNERGEARTAYRIAASHHLEGGADFAELEFLAGFIALRKLGDPAAALTHFQRLQAAVRTPISLSRAHYWQGRALEQLGRYDAAGAAFAEGARYQTAYYGLLSAERAGIPLDPALISVPRAGDWRQAGFASSSVLAAGRLLLAAGERDLGKRFLLHLAESLDAGDLGRLAEMALDMGEPHVAVLIAKQAAEQGTILPQAYFPVPDLVPGDGLPVSRALALSIARRESEFNPVVVSPAGARGLMQVMPGTAKLVAPKLGLDFEPARLTQDAAYNVRLGTAYLAQLVEEFGPSLALVASGYNAGPGRPRRWITEFGDPRSGDVDPVDWVEQIPFAETRTYVMRVTESVVIYRAKLRGSGGPVRITPELTG
>NC_009428.1|WP_011907192.1|127677_128550_-|4-hydroxy-tetrahydrodipicolinate-synthase
MIRGSIPALVTPFKNGELDLDTLKKLVDWQIAEGSTGLVPVGTTGESPTLSHEEHETVIEAVVQAAAGRVPVIAGAGSNSTTEGIRLIRFAERVGADAALVVTPYYNKPTQAGLMAHFTALHDCCNLPIVIYNIPGRSVVDMTPETMGRLAQLPRIIGVKDATGKIERVSQQRASCGAEFLQLSGEDATALGFNAHGGVGCISVTANVAPRLCAEFQQATLRGDYATALEYQDRLMPLHEAIFLEPGLVGAKYALSQLGLCSDEVRLPLVGLTDPTKARIDAAMRHAGLI
>NC_009428.1|WP_011907191.1|127074_127548_-|SsrA-binding-protein-SmpB
MVKHSDPNSKLIAENRRARFDYFIEEEIEAGIILMGSEVKSLRQGGSNIGESYASVENGELWLINGYIAPYLQAKTWGHEERRKRKLLVSRRELARLWNATAREGMTIVPIRMYFNDRGIVKLKIGIAKGKKLSDKRATEAKRDWGREKQRLLKQHS
>NC_009428.1|WP_011907190.1|126133_126982_-|3-mercaptopyruvate-sulfurtransferase
MTDDPRTLVSTDWLAAHLRDPDLRILDGSWYLPQENRDPRAEYEAEHIPGARFFDIDEIADRRSALPHMAPPPEKFISRMRAMGIGDGHQVVIYDGSGLRSAARVWWTFRLMGKTDVAVLDGGLPKWKAEGHPTEDMPPVMRDRHMTVQRQAGLVKDVTQVAHASKLGEAEIIDARSEGRFRGTEAEPRPGLRSGHIPGSKNVPFPTLLTPQGTMKSPDELRAIFEAAGVDLSKPAITTCGSGVTAAVLSLALEILGHRNHALYDGSWAEWGMYDDLKVAKG
>NC_009428.1|WP_044247653.1|124941_126126_-|aspartate/tyrosine/aromatic-aminotransferase
MLTALKPQPADKILQLIQMFREDARADKIDLGVGVYKDPTGLTPVMRAVKAAEKRLWEVETTKTYTGLAGEPAYNAAMAKLILAGAVPSDRLASVATPGGTGAVRQALELIRMAAPDATVWISNPTWPNHLSIVKYLGIPMKEYRYFDVETGAVDFDGMMADLAQVKAGDVVLLHGCCHNPTGANPNPVQWLAICEALAKAGALPLIDLAYQGFGDGLEMDAAATRLLATRLPEVLIAASCSKNFGIYRERTGILMAIGDASAKATVQANLNFLNRQNYSFPPDHGARLVTMILEDEILTADWKSELEEVRLNMLTLRRQLADALQAETGSNRFGFVAEHRGMFSRLGLSPEQVEKLRMEHAVYMVGDSRLNIAGLNSTTVPVLAKAVAQVLRG
>NC_009428.1|WP_011907188.1|123427_124780_+|ammonium-transporter
MKKISQFMGLSALAAAAALPAWAQEAATDAVEAVAETVTPVMDKGDVAWMLMSTVLVFFMILPGIALFYGGLVRAKNMLSVLMQTTLIACTVMVIWVIYGYSFAFGGGTSPFWGGLGKLFLSGVTADSMAATFSDEFVIPEYLFICFQMTFAALTPALIIGGFAERIKFSAVMIFTVIWVTFAYFPIAHMVWDGSGLIFNWGAIDFAGGTVVHINAGVAALIGAIMVGKRIGLGKENMAPHSMVMTMIGASMLWFGWFGFNVGSNLEANGGATLAMINTFVATAAAVVAWSLIEALARGKASMLGAASGMISGLVAVTPACGTIGPMGAIVLGAAASGVCYFFVTTVKNAMGYDDSLDVFGIHGIGGIIGAVGTGIFSAATLGGVNGDDYSIVGQTIIQIQAVVVTLIWTAVVSVVAFKIADLIVGLRVDTESERIGLDQTAHGEAAYHG
>NC_009428.1|WP_011907187.1|123061_123400_+|P-II-family-nitrogen-regulator
MKLIIAAIKPFKLEEVREALTTIGVRGMMVTEIKGFGSQSGHTEIYRGAEYAVNFVPKVRLEIVVADSLADSVVETIRITAKTDKIGDGKIFVLDVEQAVRVRTGEINDDAL
>NC_009428.1|WP_044247652.1|120532_122800_-|PBP1A-family-penicillin-binding-protein
MSGSNGRRPPLVADRRYGAPAAKKTTSKGGGGGRGAKPPPKSTPRRRPRKRDPLSAAVAWVLGLIWGIVMFFWRILWGVGWRIAAVVGLVLGLSAYYFYSQLPEVTQLVDGRARGSVTMLDREGKVFAWRGETYGGLVTSDKVSEHLREAVVATEDRRFYRHFGISPRGIASAVRINLAEGRGPLEGNGGSTITQQVAKLLCLGVQYDPQQWKSEADYEADCRRGGIWRKVKEVPFSLAMEAKYTKAEILTIYFNRAYLGAGARGFEAAAQRYFGKSASQVNAAEAAMLAGLLKAPSYYAPTANLQRARDRANVIIGLMEEQGYLTRAEAEQARRNPAQLSEAAQSRSGGFFADWVMESGPAFLTRDTTEDVIIRTTLDQRLQKAAEGALADVFKSKVSEGSKAQAAVVVMSADGAVRAMVGGRKLEAAGSFNRATQALRQTGSAFKPFIYAAAMDLGYSPADFVDDSPLTVMVKGSGPWTPANYDRKFRGIVTLTAALKQSLNIPAVRITEAVGRDKVRQVASEFGIQSNLAAGPALALGVSEATLIEMTGAYAGILNGGSAVKPYGLVELRLQGEDTPLIGQEGGIGERVISEQAAQLLTYMMTEVINSGTGTRARLPDREAAGKTGTTQAARDAWFVGFTADYVAGVWMGYDDNTPLKGVTGGGLPAEIWREVMVRVHEGVPPAPLRKIVPEPRLPPQSTADVRTEPVPQDTGDWQAARPRDTGDWQAAPRQPSAGEQIVRDVLGIFGGGRN
>NC_009428.1|WP_044247661.1|132827_133103_+|hypothetical-protein
MTDDMNTQAKVAAANWVAEAVHTLLADIEDATGWPPSVILSGAHALIISELALALGGRMAAAMARQSADRVCDLPSRKPYSLADAPPVGRA
>NC_009428.1|WP_044247664.1|133105_133294_+|hypothetical-protein
MGQVIHLIRALPDAVLHEIGDHLLHAYAALERPSMSDEDRIAARNAVAEALNHLGFLSAGEP
>NC_009428.1|WP_011907198.1|133388_133880_+|DNA-packaging-protein
MRILEELALDGKPVLRIGASDLCELLSLTPGALSDLKKRGIAVHRGHDAYDLAATVTAYVVHLRGIAAGRGGEEHTASLTAERARLAKEQADAQALKNGALRGELVAASEVERAWSDTLRKVRSRILAVPSRLRQVVTLAPAEVDALDRELRDALMELGNADR
>NC_009428.1|WP_011907199.1|133866_135645_+|phage-terminase-large-subunit-family-protein
MPTVDEITARALRALIPPPRLRLSEWIEASICLPDGVSAQPGPVRLWPFQREIADAIGDPLIERVTLVKPVRVGFTTLLTSAVASFVANEPAPILCLLPAEADCRDYVVSDIEPIFAASPAVARALGDDRDEGERNTLLSRRFPGGSLKVVAAKAPRNLRRHNVRVLFMDEVDGMDATAEGSPLLLAERRTLSFPNRKIVLGSTPVHEDTSHVLRAWAQSDGRIFEVPCPSCGAFSEILWDQIVWTDADPDTARWRCPHCADEIAERHKAQMVASGIWRATRPEVQGHAGFRLNALVSLHANAAWPKLVAEFLTAKDDPTTLQTFVNTILGQGWRGAGDELQDDELAARGEAWGLSAVPAEVLALTAGCDVQHDRIEVTFVGWTESGLAFVLGHRVIWGAWDAEDTWAELDDLLRERFPHALGGRIGLDAVAIDAGDGTTMHKVTAFCGPRTRRRVLAIKGASGNRPLIERAGSKTKTGARLWIVGVDTAKLQIFSRLGRGASMRLSAELPRVWHEQVASERAVLRYRAGQPVRTFERIPGRRAEALDCLVYALAARQMVNPDWDARRSELVANAAPAARKAPVLTSSWMQR
>NC_009428.1|WP_011907200.1|135922_136189_-|helix-turn-helix-domain-containing-protein
MSIPEVSIEQIKAARALLRWSQADLAEASGVSLPTIKRLEAASGRIGGRSATSAAILSALQAGGIRFTEHTGVQLLPKRDEWEEYADA
>NC_009428.1|WP_011907201.1|136247_136490_+|hypothetical-protein
MPNAHVPATDIGLPSSSAMAPNITDMHDDAAILRGLIEAMDALSEHIGPKGNGLYACINRALPLSVKLSQDLERLMDHAA
>NC_009428.1|WP_011907202.1|136479_136839_+|hypothetical-protein
MQPDRITRRAALAAPLALAAAPAAAAEARPQETPVLRLFREWEAMDAQIDKLSGEAADAMLADLLALELRLRSTPSTGVADFAAKVVAFSFWGGACLDACDAPEIWAEARALLGVLPRA
>NC_009428.1|WP_011907203.1|136933_137458_+|hypothetical-protein
MAELRKMTMGEIAEIADLPKETARARLKTALGGIKNSYGWARFDVPSTLRIAVHAEMMRRTGIGQIALRTADFVAGSYHNFAATPPHTIRRKGQLDGSYLVFRQLSEGEPIWNGTWCPSQKEALNLAGEYIFESSLCMEAAGFYFLNVSTVADWALDRIFDLQGIDGNEARVPQ
>NC_009428.1|WP_011907204.1|137454_138786_+|phage-portal-protein
MSFPFGILDRIFRATSKRSGIEAGGGGRRWQGAPMLGAPQQSALAARGAVKARASGLYLNTPQGNRIVEAWVAALVGKGFQARSQHPDPITRRRLNDDFEAMVGPILTPFARALVRDGEAFVQIVVQESGALRLKLIPADQVDPSLSRDLGNGGRIVAGIEFDAADEVVAYHVLREAPGAPFVSYGAPLRVPARDMIHVFDSLFPGQVRGLSWLSPVLLKLRDRDEASDALLMQLKTASLVTGFIRDPDGSAAGFDGEASGGGINVALEPGAMRILPPGADVTFSNPGQGLAQAVEFLRAQDREIAAGAGLTFEALTGDLGEANYSSARVGLLEFRRRAEMQQHNLIETPFLRPLWRRWIDTLALAAAIPTDPASLADHHAVRFVPPGWPWVDPQNEVNADVAAIAAGLKSREEVVAGRGRDIDDLDEERARDAVRPTDGETA
>NC_009428.1|WP_011907205.1|138782_140543_+|peptidase-U35
MTLHLRAATPRPSTLDPEARTIEAIVSTGADAPRAGFVERLDLRGVDLSRLIGAPVLDAHRAASTRDQLGVVEAAELRPEGLWVRMRFRSNDAAQAVLADIGDGTLRGLSIGYSVAEWKDMRDGNRRIRTATRWTPLEVSIVPVPADSGAHFRNGEMEMPQTQQDAGHAPAAGVVLTRAEINAEIRTIAETAGLTRSWADAQIDAEATAEDARAAAFEAMRTRSAQTAPRTSRASITFDHTDPAVVVQRAGEALFARSHPEHALSEAARPYAHMTTVDLARDCLHRSGLSCTGLASEGIITRALHTTSDFPLILGDAVGRELRTAYSAAPAGIFQLARQTTVRDFRAKNAIQFGGQPDLEKVNESGEFKHGTFEESAESYSIATFGKIFAISRQALVNDNLGAFTSVPARLGASARAFEAAQLVAKLTANPVMSDGVAVFHADHKNLSAEAIINATSLATARIAMRRQTGLTSELVAVTPRFVVVPPELELAAERMLTEIQAATVAEVNPFSNLSLVVEPRLTNAAQWYVAADPASIDGLEYAYLEGAPGPQIESKAGFEVDGVQIKVRLDFGCGWIDHRGWHRVG

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Crispr_ID: NC_009428_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009428_2

1255177-1255248

Orphan

Consensus_repeat	Method
GTCGGTTCCGGTCATGCCGGTGTCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009428_2

>merge|NC_009428|2|1255177-1255248|CRISPRCasFinder
GTCGGTTCCGGTCATGCCGGTGTCGGTCGTGGTGGTGCCCGTCATGCCGGTGCCGGTGGTGTCGGTTCCGGT

>NC_009428|2|2|1255177-1255248|CRISPRCasFinder
GTCGGTTCCGGTCATGCCGGTGTCGGT	CGTGGTGGTGCCCGTCAT
GCCGGTGCCGGTGGTGTCGGTTCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009428.1\|WP_011908255.1\|1259840_1260098_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908242.1\|1245701_1246505_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_009428.1\|WP_011908256.1\|1260094_1262635_-\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NC_009428.1\|WP_011908244.1\|1247414_1248500_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_009428.1\|WP_011908245.1\|1248510_1249599_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_009428.1\|WP_011908258.1\|1263621_1264125_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|139055
NC_009428.1\|WP_011908252.1\|1256797_1257745_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NC_009428.1\|WP_011908247.1\|1251472_1251748_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908240.1\|1245093_1245366_-\|DUF2160-domain-containing-protein	unknown	unknown	gnl\|CDD\|378313
NC_009428.1\|WP_011908241.1\|1245378_1245702_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908251.1\|1255905_1256733_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908243.1\|1246542_1247415_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_009428.1\|WP_101340726.1\|1263282_1263462_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908248.1\|1251938_1252316_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908249.1\|1252357_1254691_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NC_009428.1\|WP_011908246.1\|1249720_1251325_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NC_009428.1\|WP_011908254.1\|1259062_1259815_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_009428.1\|WP_011908253.1\|1258545_1258920_-\|response-regulator	unknown	unknown	gnl\|CDD\|381122
NC_009428.1\|WP_011908259.1\|1264432_1265365_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NC_009428.1\|WP_152334764.1\|1262914_1263238_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009428.1\|WP_011908242.1\|1245701_1246505_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.49849e-69
NC_009428.1\|WP_011908256.1\|1260094_1262635_-\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NC_009428.1\|WP_011908244.1\|1247414_1248500_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	2.36385e-124
NC_009428.1\|WP_011908252.1\|1256797_1257745_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	8.55177e-23
NC_009428.1\|WP_011908249.1\|1252357_1254691_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NC_009428.1\|WP_011908240.1\|1245093_1245366_-\|DUF2160-domain-containing-protein	gnl\|CDD\|378313	pfam09928, DUF2160, Predicted small integral membrane protein (DUF2160). The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.	5.08227e-36
NC_009428.1\|WP_011908245.1\|1248510_1249599_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	1.20952e-116
NC_009428.1\|WP_011908246.1\|1249720_1251325_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NC_009428.1\|WP_011908243.1\|1246542_1247415_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.25273e-66
NC_009428.1\|WP_011908254.1\|1259062_1259815_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.09201e-43
NC_009428.1\|WP_011908253.1\|1258545_1258920_-\|response-regulator	gnl\|CDD\|381122	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators. This subfamily is composed of stand-alone response regulators (RRs) containing the PFxFATG[G/Y] motif; RRs with such a motif are also called ''FAT GUY'' response regulators. Included in this subfamily are Sphingomonas melonis SdrG, Sinorhizobium meliloti Sma0114, and Erythrobacter litoralis EL_LovR. SdrG is involved in the control of the general stress response. Sma0114 is part of the Sma0113/Sma0114 two-component system (TCS) that is involved in catabolite repression and polyhydroxy butyrate synthesis. EL_LovR is involved in a light-regulated TCS. PFxFATG[G/Y] RRs are typically associated with histidine-tryptophan-glutamate (HWE) histidine kinases that constitute a subclass of the larger histidine kinase superfamily characterized by an altered ATP binding site, which lacks the F-box that is normally an integral component of the ATP lid. The PFxFATG[G/Y] motif is involved in conformational changes after phosphorylation that results in the activation of the RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.76897e-15
NC_009428.1\|WP_011908259.1\|1264432_1265365_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.37649e-117
NC_009428.1\|WP_011908258.1\|1263621_1264125_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|139055	PRK12546, PRK12546, RNA polymerase sigma factor; Provisional.	2.82072e-52

>NC_009428.1|WP_011908249.1|1252357_1254691_-|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MTVTITAIVLALAGLGLLIPGVWLATLGGSWFYAAAGAVMLLSAWQVHRRSAAAEWTYGALILGALLWSIWEVGFDWWQLVPRGGVIAVLGIWLYLPFMRRQLLTEDHHPAPGLPLALPLLAAIGVAIWSWTGDEASRKGELPTEVVSAEPDLGPTAPPGEWHQYGRTQYGQRYSPLDQINIQNVAELEQVWHYQTGDVKLPEDVTETTYQVTPLKVNNRLYICTPHNLAIALDAATGKQAWRFDANSGLEPDRQHQTCRGVTYWRDPGREEGELCAARVYMPTADARLIALDANSGALCDFFADNGTLHLEHGMPYTPAGFYYSTSPPVAVGGRIIIGGAVNDNFSIYSQSGVIRAFDANTGALLWNWDSGNPDSTAPIDWMNGETYTPNSPNSWSVFSVDEERGLVYIPLGNQVPDQLGMGRSEAVEEHASSVVALDVATGQKAWVFQTVHHDLWDMDVPAQPVLIDLEIEGETVPALVQPTKQGDIYVLNRETGEPVLPVSEEPAPQEGGLDEETLAPTQPVSSLSFAPDPLRERDMWGITIYDQLACRIQYHRLNYQGRYTPPSLNGTIVYPGNFGTFNWGSVAVDPERQVMFGMPTYLPFTVELVPEEEIPPPGANETASEQGLNRNEGAPYGVIMGPFLGPLQVPCSAPPWGFVAGTDLRTGEIAYKRRNGTVRDMTPLPLPFKVGVPGIGGPIITRGGVVFLGATVDDYLRAYDLTTGDELWRARLPAGGQSTPMTYEQDGRQYLVIVAGGHGSVGTKPGDHVIAYALPD
>NC_009428.1|WP_011908248.1|1251938_1252316_+|hypothetical-protein
MAQERPDRTESGSSTTPEASATGQDTSARLRADIDRGATGDKVPFMDPAAAPLGTDDEAAGTPPSPEQIARARAMEGRIPHGTANASARPRTVGELAGNETRRGLRPILIFGIIMVLVVIVALAL
>NC_009428.1|WP_011908247.1|1251472_1251748_-|hypothetical-protein
MSASENDIDKQKRRHRGPLIGIAVVVIFALGYLVWWFGYEVAEGNPPQGADVQMDGRTGETGAAPQAGSVGGNSPASADNAPAPPATAPAD
>NC_009428.1|WP_011908246.1|1249720_1251325_-|glycerol-3-phosphate-dehydrogenase
MAQGRAGEDPVDLFIIGGGINGCGIARDAAGRGLSVTLAEMGDLAQATSSASTKLFHGGLRYLEYFEFRLVREALEERETLLVAMPHISWPMRFVLPWQPEMRFAGDTPTARLLGRLMPWTRGRRPAWLIRLALETYDRLGGRRILPPARPVDLTRDPAGAPLQPRFTRGWEYSDCWVEDSRLVVLNARDAENRGATILTRTRVVAAERLGDVWRVTTEGAEGRRQHVARALVNAGGPWVARIIRETLSLPSTEGVRLVRGSHIVTRRLFDHDRCYFFQGKDGRIIFAIPYETDFTLIGTTDQDHHGAPDEARCTPEEQDYLCAFASDYFRQPVTRADIVWTYSGVRPLYDDGAQSATAATRDYVLSLDRQGPPLLSVFGGKITTYRRLAESAMARLAPHFPQARGPWTARVALPGGDFPWDGAPALAEGLRRDLPFLGERWALRLVRAYGTDARNLLGSARNALDLGREFGATLTEAEVRWLMRHEYARRAEDVVWRRSKLGLRMTAGEIAALDDWMRQAAGENRAAGMAGTG
>NC_009428.1|WP_011908245.1|1248510_1249599_-|ABC-transporter-ATP-binding-protein
MTLELQGVSRVVGGRVHIHPTDLVLEGGTMNVLLGPTLSGKTSLMRLMAGLDTPAEGRILWDGRDVTGVRVQDRRVAMVYQQFINYPSMSVYENIASPLRLQGRSRAEIDREVRGVAEMLKLTPMLKRKPLELSGGQQQRCALARALVKGAGLVLLDEPLANLDYKLREELRLEIPRIFEASGAIFVYATTEPDEALLLGGNTATLWQGRVTQFGPTPQVYRRPVDATTARVFSDPPMNFLPVTKTGTRLSFGHLANAPAEGAFARLADGHYLAGFRANHLALNRHSGRAVAFSCRLSAIEITGSETFLHLVHGSDGWVGLVPGVHEIAPGSEVSVWLDPAHVYLFDAEGALAAPAAYALAA
>NC_009428.1|WP_011908244.1|1247414_1248500_-|ABC-transporter-ATP-binding-protein
MARITLSNLAHSYLPKPRGEADFALKEMDHVWQDGGAYALLGASGCGKTTLLNIISGLLRPSRGRVLFGERDVTDAPTAERNIAQVFQFPVVYDTMTVRENLAFPLRNRGRDAAYVEARVGQIARMIGMEGALDTRARGLTADAKQKISLGRGMVREDVNAILFDEPLTVIDPHMKWELRTQLKRLHREFGHTMIYVTHDQTEALTFADKVVVMHEGRVVQTGTPEELFETPGHTFVGYFIGSPGMNLFEAEVSGDMARVMGHPVPLGATYPPTGGRVQIGVRPEFVSLADAGLPVTIRRIEDVGRHRILRGEVFGQPVNLLLPEDRPAATGSAFLQLAPEKINVYSDDWRVQPVGARRAA
>NC_009428.1|WP_011908243.1|1246542_1247415_-|sugar-ABC-transporter-permease
MDKSWNNRAWFLVLPVLLLVAFSAVIPLMTVVNYSVQDTFGNNEFFWAGLEWFEETITSERIHAALGRQVLFTAIILAIEVPLGIFVALNMPKKGFWASLCLILMAMPLLIPFNVVGTIWQIFGRVDIGLLGRTLTAMGIDYNYTSDWLDAWVTVIVMDVWHWTSLVALLCYAGLQSIPEAYYQAAKIDQASRWAVFRYIELPKMRGVLLIAVLLRFMDSFMIYTEPFVVTGGGPGNSTTFLSIDLVKMAIGQFDLGPAAAFSIIYFLVILLISWVFYTVMTNLDREDRP
>NC_009428.1|WP_011908242.1|1245701_1246505_-|carbohydrate-ABC-transporter-permease
MKRPGSALVMVLYLLFLLIPIYWLVNMSLKTNAEITRSFTLWPHDLTFQNYRTILTDPAWYMGYVNSLIYVVMNTAISITVALPAAYAFSRYRFLGDKHLFFWLLTNRMAPPAVFALPFFQLYSSVGLFDTHIAVALAHCLFNVPLAVWILEGFMRGVPKEIDETAYIDGYSFPRFFVKIFMPLIASGIGVAAFFCFMFSWVELLLSRTLTSVNAKPIAATMTRTVSASGLDWGVLAAAGVLTLIPGGLVIWFVRNYIAKGFALGRV
>NC_009428.1|WP_011908241.1|1245378_1245702_-|hypothetical-protein
MLHKVLCVIVACAALTPGLAPAQGAAEPWEGGCLVRGLDPNGDGFLSVRRGPGSENAEIARVRNGDALFLDHRKCQGKWCLAEGGVVGGRQTDIRGWFYTAWCEFYP
>NC_009428.1|WP_011908240.1|1245093_1245366_-|DUF2160-domain-containing-protein
MAWMAWTWPTAAFFVTIVALLLLMTALAVLRPETPRVGILRIETTRGDRLFISLLGSAFLCLLWLGLMGPPLWGALALCLIYAAAVFRWV
>NC_009428.1|WP_011908251.1|1255905_1256733_-|hypothetical-protein
MTIFRTPFIAGVAALLASSAAAQTTTAQGTTMGRDWDAPMVDTFFNPGGSMTLRANSEIRSSWDSLSEQQKQQVRDDCAAFGTQGAGASPAGGAGATDPASADAGANATTGTGGTAGTDMTATGTAGPADGAELESGGAASPIGQPTGEQAAQADSTPTHDTTGHPDTKVSTVGESDATTDDMGTTAGPGTSDERVTAVEQAMRENAPQTTGTGATTNPPADGATVGSGAGSVNASNTADTGAQGSPATPGTQEFDSASVSLTSWTQICQMVESF
>NC_009428.1|WP_011908252.1|1256797_1257745_-|BON-domain-containing-protein
MAHSRFDPRQRGWSDDDTHRGYREDQGEEQRGGRRSGRDERDRFRDRFDARYQDRGQEDQGGGRDRWREGSGMDAASGYGFGSAGFDPRDRGQRRGGYGASDRDHDRGYDPYSERGSQDDRSWGYGPQMGREWDGRGRSSSERTGHGGPRFHDSAGERGFMERAADEVMSWVGDEDASHRREADHRGKGPRGYQRSDERIHGDVNDRLSDDPRVDASDIEVSVASGEVTLSGHVSSKIEKRRAEDCADSVSGVRHVQNNLRVRDAMGGSGTGSGSGAGTLGGATTGQSGSGLSGPGGTDSGLSDDRPGGSRNTQA
>NC_009428.1|WP_011908253.1|1258545_1258920_-|response-regulator
MPLADKLHPPRILLAEDDLVLAMTMVDELRASGFEIVGPTRSAAEGARLVEHQSVDAALLDLRLKDGPCFGLARALRIRGIPFAFVTGETREAIPEDLADVDVLDKPVTAVTISTMLEKLLQEH
>NC_009428.1|WP_011908254.1|1259062_1259815_+|MgtC/SapB-family-protein
MVQLLQDFLAQDLVLPMFSSLLTGLLIGFDREMRGKPAGLRTHALVCFAATVLTLAAARQAEWTVSFLGDTQIVADPARMAHGILTGIGFLGAGVIFREGASVHGLTTAASLWVTSAIGIVYGVGMYWLAVAATVATLVVLVALRLFYAALPVRTEVRLRVTVRLGSRFDARRLTEILRSEGLEVGPVSRSLSRPSERLRLSTATHARREAVLDRLARALTDEEDVLSFDIMPVEDPAGRPLPDPQAERG
>NC_009428.1|WP_011908255.1|1259840_1260098_-|hypothetical-protein
MTGLTTETIEGRLIAQRKVLARLVALAGSDELRAWLEERSVMQDNQEDPGAVPAPGVGIEVALAEEIRCIRDEADRFGQGIAPGR
>NC_009428.1|WP_011908256.1|1260094_1262635_-|DNA-ligase-D
MSEAARPQDLERYRARRDFARTPEPDGRTPEDRAGALRFVVQKHAARRLHWDFRLEWNGVLLSWAVTRGPSADPSARRLAVRTEDHPIDYAGFEGTIPKGEYGGGTVMLWDRGTWEALDDVNKGLSEGRLKFRLEGERMRGGWMLVRLKPRAGDKGENWLLIKEHDAHERPGPEGLVEAHVTSVESGRRMEEIAEGRRPRQRRKPAAPPRFRPLQLARLVPAAPDGPDWLHETKFDGYRCLAALADGKVRLHTRSGLDWTDKFGTLVPDLARLAVGRALIDGEVIAPGEASGAFSELQARLKTGGTLAFMAFDLLALDDEDLTGLPLLERKARLESLLEGETGAIHYSTHIRGHGPEVHERMCAAGQEGIISKRVEAPYSGTRNGDWLKVKCVLRQEFVICGWKASDKPGRPFASLVMGSYETGRLTCRGAVGSGFDARTFRELKPLLAGRARATSPFGHVPEGAEGARWLRPDLVAEVTFTELTRDGHIRHGVFAGLRDDKPARDVRLEAPEDALAEDAAPPKPPARAPREGRTNEDPMPQADNDVRVAGIRISNPDRRIYERPAVTKREVAEHYEALGPRMLPFLRDRPVSLVRCPDGAAGECFFQKHRTRGMPSAIRTVKVETKSGPEDYITLPDVPALVGAAQMGALEFHIWGSRNRRLERPDRMVFDLDPDEGLDFARVREAAAELRVRLDDLGLPAVPMLSGGKGVHVIVQLKPAAEWESVKLFTRALSTLLAEEAPDRYTAAMAKAGRKGRIFIDWLRNDRGSTAVAPYSLRARPGATVATPITWDELARARSAGDWTIRSIRERLEGPCPLAEARPVTLGRTVIGRLERLVTQFKEGT
>NC_009428.1|WP_152334764.1|1262914_1263238_+|hypothetical-protein
MRQPEDPLNPDTALSAASPVRDSCRDVLQTDGTKAGQGSCHATVTRQEPEAMFPFMQDSQGEDLVNKHVEDNLRRTYTVSTADQSTDDRFASLLRRISERQVRSGQS
>NC_009428.1|WP_101340726.1|1263282_1263462_-|hypothetical-protein
MGPDELKDLSEELLRAIEAEPVPEPIQLLARRLACALGSQMAGNPVLLAPRESVKESDS
>NC_009428.1|WP_011908258.1|1263621_1264125_+|sigma-70-family-RNA-polymerase-sigma-factor
MTDQTPPRSIIPDVVDLIPALRAYARSLSRNQADADDLVQETLLKAIANVDKFQPGTRLRAWLFTILRNTFYTRIRVSARERTGTADCVSGEMSVQPSQEWTVRGQELMAAIDRLPAHYREILILVVMLGESYEEAARICDCAIGTVKSRVSRARQLVMNDLEGGGT
>NC_009428.1|WP_011908259.1|1264432_1265365_+|ACP-S-malonyltransferase
MSRAFVFPGQGAQTIGMGRALAEAYPAARAVFEEVDEALGEKLSALIWEGSIDELTLTQNAQPALMATSMAALAALEAEGLGIATASFVAGHSLGEYSALCAARSLKLADTARLLRIRGQAMQEAVPVGVGAMAALLGLDYETAVEVAHEAAQGEVCQAANDNDPAQVVVSGHKAAVERAVEIAKGRGAKRAILLPVSAPFHCALMQHAASVMSEALAAVVIEAPVCPVVVNVRAEAVSEPDRIRALLVAQVTGAVRWRESVMWMENAGVTEFWEIGAGKALSGMIKRIAKGAATRAIGTPDDVTAAAAV

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Crispr_ID: NC_009428_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009428_3

1689851-1689958

Orphan

Consensus_repeat	Method
CCGGCCGCAGCGGACGCCGCGCCGCCTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009428_3

>merge|NC_009428|3|1689851-1689958|CRISPRCasFinder
CCGGCCGCAGCGGACGCCGCGCCGCCTTCGAGACATGAGCCCGAGCCGGCCGAAGAGCCCAAGATGCCTCGGGAGGCGCCGGCCGCAGAGGACGCCGCGCCGCCTTCG

>NC_009428|3|3|1689851-1689958|CRISPRCasFinder
CCGGCCGCAGCGGACGCCGCGCCGCCTTCG	AGACATGAGCCCGAGCCGGCCGAAGAGCCCAAGATGCCTCGGGAGGCG
CCGGCCGCAGAGGACGCCGCGCCGCCTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009428.1\|WP_011908671.1\|1692674_1692971_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|131533
NC_009428.1\|WP_011908673.1\|1693301_1694042_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NC_009428.1\|WP_011908663.1\|1683950_1685669_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NC_009428.1\|WP_011908660.1\|1681725_1682031_-\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908674.1\|1694041_1694308_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|130469
NC_009428.1\|WP_011908669.1\|1691078_1691657_+\|flagellar-basal-body-associated-FliL-family-protein	unknown	unknown	gnl\|CDD\|377123
NC_009428.1\|WP_011908675.1\|1694307_1695108_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|130467
NC_009428.1\|WP_011908662.1\|1683607_1683931_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
NC_009428.1\|WP_085996612.1\|1690405_1691068_+\|flagellar-hook-length-control-protein	unknown	unknown	gnl\|CDD\|350657
NC_009428.1\|WP_011908659.1\|1680340_1681540_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NC_009428.1\|WP_011908664.1\|1685670_1686690_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NC_009428.1\|WP_011908677.1\|1696306_1697047_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_009428.1\|WP_011908661.1\|1682457_1683594_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226350
NC_009428.1\|WP_011908676.1\|1695094_1696237_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|129428
NC_009428.1\|WP_011908665.1\|1686693_1687488_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NC_009428.1\|WP_011908672.1\|1693047_1693305_+\|flagellar-assembly-protein-FliO	unknown	unknown	gnl\|CDD\|274610
NC_009428.1\|WP_011908666.1\|1687484_1688813_+\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|274607
NC_009428.1\|WP_011908667.1\|1688814_1689228_+\|hypothetical-protein	unknown	unknown	unknown
NC_009428.1\|WP_011908658.1\|1679534_1680344_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_009428.1\|WP_011908670.1\|1691660_1692632_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|130464

Protein	Function_ID	Function_description	E-value
NC_009428.1\|WP_011908671.1\|1692674_1692971_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|131533	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility].	6.32718e-31
NC_009428.1\|WP_011908673.1\|1693301_1694042_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.89441e-115
NC_009428.1\|WP_011908663.1\|1683950_1685669_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	4.31125e-131
NC_009428.1\|WP_011908674.1\|1694041_1694308_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|130469	TIGR01402, Flagellar_biosynthetic_protein_FliQ, flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems. [Cellular processes, Chemotaxis and motility].	4.16678e-28
NC_009428.1\|WP_011908662.1\|1683607_1683931_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	1.75574e-21
NC_009428.1\|WP_011908675.1\|1694307_1695108_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|130467	TIGR01400, Flagellar_biosynthetic_protein_FliR, flagellar biosynthetic protein FliR. This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT. [Cellular processes, Chemotaxis and motility].	2.29807e-61
NC_009428.1\|WP_011908669.1\|1691078_1691657_+\|flagellar-basal-body-associated-FliL-family-protein	gnl\|CDD\|377123	pfam03748, FliL, Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.	2.2862e-17
NC_009428.1\|WP_085996612.1\|1690405_1691068_+\|flagellar-hook-length-control-protein	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	2.32664e-20
NC_009428.1\|WP_011908659.1\|1680340_1681540_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	9.57552e-124
NC_009428.1\|WP_011908664.1\|1685670_1686690_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	5.41094e-123
NC_009428.1\|WP_011908677.1\|1696306_1697047_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000107061
NC_009428.1\|WP_011908661.1\|1682457_1683594_+\|AAA-domain-containing-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.82688e-104
NC_009428.1\|WP_011908676.1\|1695094_1696237_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|129428	TIGR00328, Flagellar_biosynthetic_protein_FlhB, flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility].	6.12961e-143
NC_009428.1\|WP_011908665.1\|1686693_1687488_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	9.50234e-12
NC_009428.1\|WP_011908672.1\|1693047_1693305_+\|flagellar-assembly-protein-FliO	gnl\|CDD\|274610	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.	7.50811e-05
NC_009428.1\|WP_011908666.1\|1687484_1688813_+\|FliI/YscN-family-ATPase	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NC_009428.1\|WP_011908658.1\|1679534_1680344_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	6.47101e-65
NC_009428.1\|WP_011908670.1\|1691660_1692632_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|130464	TIGR01397, Flagellar_motor_switch_protein_FliM, flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself. [Cellular processes, Chemotaxis and motility].	1.09272e-120

>NC_009428.1|WP_011908667.1|1688814_1689228_+|hypothetical-protein
MTTKSHLLSLMSRRETVRLMQVQGALREARDRHAEAEAISERLSQMLEGRRAAAQGPVAAADLFRAHRLTLQIAEQAERSAQRAAELSAALGVAQAEMARQDHRTRLLQESAATALAAETEERIARAEAARPALRRG
>NC_009428.1|WP_011908666.1|1687484_1688813_+|FliI/YscN-family-ATPase
MNALIDSLAHHLAHLPQRQAPEVTGRVSRYDGLLLECAGFPASPGALCRVATEDGSEVQGEVIGFAKGSNLLFLDHMRAPVIAGARVRLVPGGQMAAVGPELLGRVIDAEGAPLDGLSPPDCSAEWPLAGRTMNPLARTPVSRPLDVGVRAINAALTVGQGQRIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVAVPADRSPLLRLRAARRATAIAEHFRAQGKQVLLIMDSLTRVAHAQREVGLALGEQPTAKGYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLSRRQTQMGLYPAIDIPHSVSRTMNDVVDERHRKAAARLRQLISLYTDNRDLMLMGGYAPGQDADLDQAVQLWPKIRALIGQGPHEPSDFEASRAALLDLTGM
>NC_009428.1|WP_011908665.1|1686693_1687488_+|flagellar-assembly-protein-FliH
MNARTPMGPEDVLALIRESNARGFGRSAVPVRAPAEPFRPTPLAGLVRDVAPEGAALPVLEPEPPAPPAPALPDPVPPDPALLEAARAEGRREGHAEGLAEGRAAGRAEAEAALSSARDTFLQLAARLSAPTPADTARLAQLIEGAVRALASQRAGLAIDAHPEAFAARIETLADRVAQGLREVTLRLNAEDLRAVAPHLEAGGICPPTRITADPRLARGDLEVRAEGIVLADLIGVAPLAAAPRRDPETAPADAIGASAAAAS
>NC_009428.1|WP_011908664.1|1685670_1686690_+|flagellar-motor-switch-protein-FliG
MSKAADHFKTLSGTQKAAILLMLFGETTAAQIMRNLSPREVQHLGAAMYTVRGVDQDTLSLVLDDFLETLRLQTGLGFGAAGYIRNVLSAAFGEDKAETVISRIGQSASERPLEILDWMDAPSIAELLVDEHPQIMALTVACLDHALAAQVLALLPEEIQPEVVQRIASLNTVQPEALADLQQVMQRKFKASTTMRASQIGGVKAAAKIMNFTRTATEARILKDIRKDDKDLMQAIQDNMFVFDNLIKSDERSLQTLMRSVDNETLVLALKGADEMLRAKILGCMSTRAAANVRDEMEAMGPVRLTDVQAAQKQIIAVARQLSDEGTIVLAGRGGEQMV
>NC_009428.1|WP_011908663.1|1683950_1685669_+|flagellar-M-ring-protein-FliF
MALSPTPPAVRGADSPLALQMRGMVSQLRQFGDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKARVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDLPMGTSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAPGRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQMETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQSQVEESADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLPATARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAIGFDETRGDVVTITAQPFLDTIMPEPPGWTSQPWVADLARQAFLLAALAVVALGVVRPILNRVLLPAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAARSHEEQILVIRKLVEEDSGRIATTFRQMIASELDTVN
>NC_009428.1|WP_011908662.1|1683607_1683931_+|flagellar-hook-basal-body-complex-protein-FliE
MSINGISGASPLVALQGPSASQRPEPVSSTDRAQAPAFSERLGSALEGLAKSQTEAAEKASAFERGEGGNLAEVMVSQQVSSLGFQLALNVRNKALGAYRDIMNMPV
>NC_009428.1|WP_011908661.1|1682457_1683594_+|AAA-domain-containing-protein
MAAIQIIGTDFAAAHALEGLLARRRVRLQAGTGGPVAVLACSARHEAASGGAPGITALARAAGARAVVIVEEGADALAISGEMGGRLLRVALPRASGQPAHRDAALLMLADVLASQVSAMVAADAATGALIDLAARVARTDVTVFINGPTGSGKEVLARKVHEASRRAAAPFIAINCAAIPENMLEAILFGHEKGAFTGASGANKGIIRAAEGGTLLLDEVSEMPMGLQSKLLRVLQERRVTPLGSQTEVPVDVRIIATSNRNMPEEVRARRFREDLWYRLNVFPLTTKPLCEREDDIPALAVSLLRRHCPADVALPLVTPDAMEVLLAHDWPGNVRELENVIQRALVLHEDSRITAADIVIDAVPQLPVRALHLAAV
>NC_009428.1|WP_011908660.1|1681725_1682031_-|hypothetical-protein
MLSKTYHLKFPSLDAAQIAVPFVIEALGNAIPTCNLSGLNVLISKEGDVSINVFFPAIGELKNFEKKHGGFLDTMKKTFLFKSTGFDGVCIFNFDRNEEAA
>NC_009428.1|WP_011908659.1|1680340_1681540_-|chemotaxis-protein-CheA
MSAMTETGADGGLMRVSSDKISRLMDLVGELSLSVAETVHSPDLAGLELTSFDAAVHRLTMIVREVQDAATELRLVPVEEVFKRLRRMVRELERQTGKKIEMVLEGEETAIDKLVADQLYDPLLHVVRNSADHGLESPAERLAAGKPEAGRITLSAAQVGSEVRITVADDGRGLSRDKILKRARERGLFGPDEEPEPSVLWKVIFQPGFSTAEAVTNLSGRGVGMDVLNTTMTALRGRIGVESAAGAGSEVSLHIPVSLAFLDCIILRLGQRLYALPIDVVSEIVQPAPADVMGVGAAGGSEMLRLRGRWIPVCRLEKFYDEPTAGLPPLSSQVLAVVGTASGAIAVPVDEVLDRQQVVMKPLTGRLARVRASWGCALLGTGEVALVLDGNRLAGGGGA
>NC_009428.1|WP_011908658.1|1679534_1680344_-|protein-glutamate-O-methyltransferase-CheR
MTIREEAGYEAIRIWLSRRCGIAYPEHKGEMLRQRLSRVRRAYDLGSLADLAIRLNAAGSHDLELAVMHAASTNHTYFCREPDVLDAFRAMVLPVLARRDEIRIWSAACSSGDEVYTIAMMIAETLGPEGLARTQILGTDISAPMVEQAEQGIYRRRHLEQVPDAVLRRWFVPLGNDTFRVAPELAAACVFRRMNLKTRPFPFRKPFQAIFCRNVLYYFDRADQAETLRALHDATEPGGWLVTSVTESLRDHDSGWRSIGGGLHQKEAR
>NC_009428.1|WP_085996612.1|1690405_1691068_+|flagellar-hook-length-control-protein
MAERGPEPASEPKAQAVEPSAAAPRADFEAAPKRTGDLSPQPDRAPEPAEATVPRAPMAERPPAGVDTAALPPSGTDRADETRPSGPAEGLALGDPDWPIEVQEHVLEAAEAGTSEIEIVLAPETLGRLRIRVEMREGAAQVSFVTETAEAARLLAGQEGRLSDLLEKQGLSLARHEAGQGDTGARRESPEQGPARRTFRPSPVLPEPAAPAAGLVNLIA
>NC_009428.1|WP_011908669.1|1691078_1691657_+|flagellar-basal-body-associated-FliL-family-protein
MTDATATLDPKPRRGRGLLRMLGLLLLSVVLLALGFGAGFFYFANPLSPAKDVMRLIERTPADEETPAAIDPKAPQKVPRPTPNKEAFVTSYYQFKEPLTTNLRASRRFLQVGIGLSTQYDQKVMDNVARNEVALRSDMLAIIGTFSEEELQDKAGRDRLAEALRGAVNARLQQLEGFGGIEAVFFPSFILQ
>NC_009428.1|WP_011908670.1|1691660_1692632_+|flagellar-motor-switch-protein-FliM
MAATPRKLSSKEVAALVGNLMEASESLSMENGQEVRPFAFGDNDLNLLGDYHALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVIPPPFISLLTDSYYGGQIRHIPTTRTEFTATEQRVIELVTDRLNVALQVAWRDLMALSFTVVSREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQLRSRMQSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLTEAVSLLVENEPIFEGVPGERGGQAALNLTRRRART
>NC_009428.1|WP_011908671.1|1692674_1692971_+|flagellar-motor-switch-protein-FliN
MTDTARPLTERLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKRAESL
>NC_009428.1|WP_011908672.1|1693047_1693305_+|flagellar-assembly-protein-FliO
MDILRPDQILTLGLFLGLLGLLWLVVKLKAPGISRFASGGRLRVAEATALGPQERAVLLAVDGREFLILTSRGAAPTVLPLEARP
>NC_009428.1|WP_011908673.1|1693301_1694042_+|flagellar-type-III-secretion-system-pore-protein-FliP
MTALRVTALVAALLLSGPAFAQGLPALTITESTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYAEALSPFLDGRLAAEPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAGPYEDPRDVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATYGGQ
>NC_009428.1|WP_011908674.1|1694041_1694308_+|flagellar-biosynthesis-protein-FliQ
MDFDGSIEHLRIAYWNILLTAGPVLGVALAVGLVIGILQAATSINEATLSFVPKLAIVLLTMALASSFMLTRMTDYFAFVFETIATIR
>NC_009428.1|WP_011908675.1|1694307_1695108_+|flagellar-biosynthetic-protein-FliR
MESLPALDLPGLLGSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVLGRADLPGPEALASLSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQIFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIMMPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSLVADSLAALAQLLEVTDGRG
>NC_009428.1|WP_011908676.1|1695094_1696237_+|flagellar-biosynthesis-protein-FlhB
MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFATLAGGLALLVMLQGMLPALVRGWSGYLVLEPGADLDRVMMLRLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGGINFSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLRDELAPLDRLWTSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQELKEESKEANGSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYVPGETTAPVILALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAVAAVLAHVYRLDRGEAGDLPEVEVPDALAFDEFGRPM
>NC_009428.1|WP_011908677.1|1696306_1697047_+|hypothetical-protein
MTEETDPLSDGIARALGAANAANDAAQDLEQLQIEHRAFMDRMIRSQKRMQALSLGALTGAGVAILLGGLVYFRSVADLRETSEIQAQAGELMVTRLSDLGAAIEKVEGLADRIETQEATLKTAIEAVGERLAGDLETFSGQAAAIEPQFATAIQSHVDQGLAATREALILALGEVDNSLRKAIESGAGTSPELRALIEEMRANRPAPRAAAPAPKPAATSRPAKAAPPAAPRPAAKPADNPIRFP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009428_2	2.1\|1255204\|18\|NC_009428\|CRISPRCasFinder	1255204-1255221	18	NC_009428.1	2321247-2321264	2	0.889
NC_009428_2	2.1\|1255204\|18\|NC_009428\|CRISPRCasFinder	1255204-1255221	18	NC_009428.1	2751237-2751254	2	0.889

1. spacer 2.1|1255204|18|NC_009428|CRISPRCasFinder matches to position: 2321247-2321264, mismatch: 2, identity: 0.889

cgtggtggtgcccgtcat	CRISPR spacer
cggggtggtgccggtcat	Protospacer
** ********* *****

2. spacer 2.1|1255204|18|NC_009428|CRISPRCasFinder matches to position: 2751237-2751254, mismatch: 2, identity: 0.889

cgtggtggtgcccgtcat	CRISPR spacer
cggggtggtgccggtcat	Protospacer
** ********* *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009428_1	1.1\|132456\|27\|NC_009428\|CRISPRCasFinder	132456-132482	27	MK448898	Streptococcus phage Javan284, complete genome	33625-33651	6	0.778

1. spacer 1.1|132456|27|NC_009428|CRISPRCasFinder matches to MK448898 (Streptococcus phage Javan284, complete genome) position: , mismatch: 6, identity: 0.778

atctcctaaaatcgggtccgcaactcc	CRISPR spacer
ctctactaaaatcgggtccgctacatg	Protospacer
 *** **************** ** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105662 : 142467

Stenotrophomonas_phage(18.18%)

portal,capsid,head,terminase,integrase

attL 118564:118582|attR 143353:143371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011907170.1\|105662_106043_-\|head	head decoration protein	NA	NA	NA	NA
WP_011907171.1\|106102_107122_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	9.3e-52	36.7
WP_011907172.1\|107138_108524_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	4.8e-51	42.4
WP_152334747.1\|108516_108783_-	hypothetical protein	NA	NA	NA	NA
WP_011907173.1\|108979_109522_-	hypothetical protein	NA	NA	NA	NA
WP_011907174.1\|109518_109893_-	hypothetical protein	NA	NA	NA	NA
WP_011907175.1\|110108_110672_-	hypothetical protein	NA	NA	NA	NA
WP_044247640.1\|110664_111018_-	hypothetical protein	NA	NA	NA	NA
WP_011907177.1\|111018_111648_-	hypothetical protein	NA	NA	NA	NA
WP_044247648.1\|111657_112515_-	helix-turn-helix domain-containing protein	F8TUQ7	EBPR_podovirus	4.6e-12	50.0
WP_152334748.1\|112515_112737_-	transcriptional regulator	NA	NA	NA	NA
WP_011907179.1\|112860_113577_-	hypothetical protein	NA	NA	NA	NA
WP_011907180.1\|113576_114818_-\|integrase	site-specific integrase	B7SYF8	Stenotrophomonas_phage	3.2e-30	27.6
WP_152334749.1\|114969_115287_-	hypothetical protein	NA	NA	NA	NA
WP_011907182.1\|115781_117083_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_011907183.1\|117079_118816_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.4e-20	29.7
118564:118582	attL	NA	NA	NA	NA
WP_011907184.1\|119024_119810_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_011907185.1\|119799_120423_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044247652.1\|120532_122800_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011907187.1\|123061_123400_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_011907188.1\|123427_124780_+	ammonium transporter	NA	NA	NA	NA
WP_044247653.1\|124941_126126_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011907190.1\|126133_126982_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_011907191.1\|127074_127548_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.6e-28	44.7
WP_011907192.1\|127677_128550_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_044247658.1\|128701_130672_+	transglycosylase SLT domain-containing protein	K4NWI2	Pseudomonas_phage	1.5e-26	42.9
WP_044248493.1\|130973_131261_+	hypothetical protein	NA	NA	NA	NA
WP_011907195.1\|131257_132427_+	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	3.8e-33	38.6
WP_044247661.1\|132827_133103_+	hypothetical protein	NA	NA	NA	NA
WP_044247664.1\|133105_133294_+	hypothetical protein	NA	NA	NA	NA
WP_011907198.1\|133388_133880_+	DNA packaging protein	NA	NA	NA	NA
WP_011907199.1\|133866_135645_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	1.4e-92	35.7
WP_011907200.1\|135922_136189_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011907201.1\|136247_136490_+	hypothetical protein	NA	NA	NA	NA
WP_011907202.1\|136479_136839_+	hypothetical protein	NA	NA	NA	NA
WP_011907203.1\|136933_137458_+	hypothetical protein	NA	NA	NA	NA
WP_011907204.1\|137454_138786_+\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	4.1e-68	35.7
WP_011907205.1\|138782_140543_+	peptidase U35	B7SYD7	Stenotrophomonas_phage	3.8e-53	29.5
WP_011907206.1\|140542_140761_+	hypothetical protein	NA	NA	NA	NA
WP_011907207.1\|140762_141092_+	DUF2190 family protein	NA	NA	NA	NA
WP_152334785.1\|141402_142467_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
143353:143371	attR	NA	NA	NA	NA

DBSCAN-SWA_2

424865 : 474442

uncultured_Mediterranean_phage(27.27%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011907238.1\|424865_426437_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011907237.1\|426505_426859_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085996597.1\|426855_427155_-\|transposase	transposase	NA	NA	NA	NA
WP_044247758.1\|427359_427605_+	hypothetical protein	NA	NA	NA	NA
WP_011907491.1\|427601_427919_+	hypothetical protein	NA	NA	NA	NA
WP_011907492.1\|427908_428871_+	hypothetical protein	NA	NA	NA	NA
WP_044247760.1\|428870_429098_+	hypothetical protein	NA	NA	NA	NA
WP_011907493.1\|429279_430128_+	hypothetical protein	NA	NA	NA	NA
WP_044247762.1\|430138_430336_+	hypothetical protein	NA	NA	NA	NA
WP_011907494.1\|430590_431517_+	hypothetical protein	NA	NA	NA	NA
WP_011907495.1\|431579_432038_+	hypothetical protein	NA	NA	NA	NA
WP_011907496.1\|432099_432696_+	hypothetical protein	NA	NA	NA	NA
WP_011907497.1\|432692_434957_+	hypothetical protein	K7ZLE6	Xanthomonas_citri_phage	5.5e-20	32.3
WP_152334751.1\|435121_435496_+	hypothetical protein	NA	NA	NA	NA
WP_011907499.1\|435492_437601_+	hypothetical protein	NA	NA	NA	NA
WP_011907500.1\|437597_440435_+	hypothetical protein	A0A222YY44	Escherichia_phage	4.1e-25	31.2
WP_011907501.1\|440431_442924_+	hypothetical protein	A0A0F7L5T6	uncultured_marine_virus	5.7e-103	32.2
WP_011907502.1\|443020_444853_+	hypothetical protein	A0A2I7R619	Vibrio_phage	3.6e-06	53.7
WP_044247764.1\|444912_445176_+	hypothetical protein	NA	NA	NA	NA
WP_080517412.1\|445261_445534_+	hypothetical protein	NA	NA	NA	NA
WP_011907505.1\|445547_445793_+	hypothetical protein	NA	NA	NA	NA
WP_152334752.1\|445773_446256_+	glycoside hydrolase family protein	NA	NA	NA	NA
WP_011907507.1\|446252_446597_+	hypothetical protein	NA	NA	NA	NA
WP_152334753.1\|446544_446772_+	hypothetical protein	NA	NA	NA	NA
WP_011907508.1\|447679_448168_-	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	5.6e-47	76.7
WP_011907509.1\|448380_448995_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	2.7e-22	53.2
WP_011907510.1\|449051_450344_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.9e-92	45.1
WP_011907511.1\|450431_451004_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_011907512.1\|451251_451581_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.5e-19	54.4
WP_011907513.1\|451598_453263_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_011907514.1\|453272_454247_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.7e-53	41.7
WP_011907515.1\|454410_454764_+	membrane protein	NA	NA	NA	NA
WP_011907516.1\|454857_455496_+	heme ABC exporter ATP-binding protein CcmA	G9BWD6	Planktothrix_phage	1.6e-09	29.3
WP_011907517.1\|455492_456149_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_011907518.1\|456197_456926_+	heme ABC transporter permease	NA	NA	NA	NA
WP_011907519.1\|456922_457084_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_011907520.1\|457076_457616_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_011907521.1\|457772_460457_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_011907522.1\|460679_461387_+	DUF1223 domain-containing protein	NA	NA	NA	NA
WP_011907523.1\|461541_462585_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_011907524.1\|462676_463363_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011907525.1\|463370_464912_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_011907526.1\|464908_467701_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_011907527.1\|467684_468860_-	penicillin-binding protein activator	NA	NA	NA	NA
WP_011907528.1\|468941_469829_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_011907529.1\|469825_470179_+	hypothetical protein	NA	NA	NA	NA
WP_085996543.1\|470231_471182_+	glutathione synthase	NA	NA	NA	NA
WP_011907531.1\|471520_472573_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011907532.1\|473012_473237_-\|transposase	transposase	NA	NA	NA	NA
WP_080517414.1\|473341_474442_+\|transposase	IS30 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

734888 : 752082

Bacillus_phage(50.0%)

integrase,transposase

attL 730331:730346|attR 760256:760271

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
730331:730346	attL	NA	NA	NA	NA
WP_011907778.1\|734888_737888_-\|integrase	phage integrase family protein	NA	NA	NA	NA
WP_011907779.1\|737874_739368_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_044247843.1\|740427_740790_+\|transposase	transposase	NA	NA	NA	NA
WP_011907782.1\|741839_743123_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	1.1e-20	25.3
WP_080517452.1\|747483_748506_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011907789.1\|748785_749388_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_080517417.1\|749481_749916_+	hypothetical protein	NA	NA	NA	NA
WP_085996547.1\|750856_752082_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	5.0e-68	50.0
760256:760271	attR	NA	NA	NA	NA

DBSCAN-SWA_4

860980 : 870780

Vibrio_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011907891.1\|860980_862984_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.5e-34	35.3
WP_011907892.1\|862995_863376_+	hypothetical protein	NA	NA	NA	NA
WP_011907893.1\|863646_864114_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_011907894.1\|864128_865199_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.0e-34	31.7
WP_011907895.1\|865235_865664_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_011907896.1\|865871_866768_+	thymidylate synthase	A6M9A2	Geobacillus_virus	5.8e-74	48.8
WP_011907897.1\|866767_867247_+	dihydrofolate reductase	A0A0K2QQK4	Ralstonia_phage	1.9e-23	41.2
WP_011907898.1\|867284_867689_+	DUF2177 family protein	NA	NA	NA	NA
WP_011907899.1\|867754_868081_+	hypothetical protein	NA	NA	NA	NA
WP_002720550.1\|868136_868343_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.5e-11	50.0
WP_152334760.1\|868611_868815_+	hypothetical protein	NA	NA	NA	NA
WP_011907900.1\|868839_870780_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.2e-116	37.2

DBSCAN-SWA_5

1103574 : 1115657

Paracoccus_phage(50.0%)

protease,portal,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011908113.1\|1103574_1104741_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.2e-58	35.9
WP_011908114.1\|1104742_1104976_+	hypothetical protein	NA	NA	NA	NA
WP_011908115.1\|1104980_1105544_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	7.2e-30	47.9
WP_044247934.1\|1105576_1106773_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-63	40.1
WP_011908117.1\|1106862_1107462_+	hypothetical protein	NA	NA	NA	NA
WP_011908118.1\|1107461_1107797_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011908119.1\|1107793_1108192_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011908120.1\|1108225_1108639_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_011908121.1\|1108638_1108956_+	gene transfer agent family protein	NA	NA	NA	NA
WP_011908122.1\|1108957_1109158_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_044247936.1\|1109150_1109801_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.1e-08	27.2
WP_011908124.1\|1109810_1110443_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.0e-61	53.1
WP_011908125.1\|1110442_1111327_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	5.4e-64	45.5
WP_011908126.1\|1111323_1111764_+	peptidase	F4YXU4	Roseobacter_phage	6.2e-29	47.5
WP_011908127.1\|1111763_1115657_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	1.4e-220	39.5

DBSCAN-SWA_6

1313513 : 1447540

148

Rhodobacter_phage(16.95%)

protease,portal,tail,capsid,head,tRNA,terminase,integrase,transposase

attL 1386198:1386239|attR 1403231:1403272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011909091.1\|1313513_1314209_-	helix-turn-helix transcriptional regulator	A0A1B0T6N0	Pelagibaca_phage	6.1e-55	49.8
WP_011909090.1\|1314295_1314595_+	hypothetical protein	NA	NA	NA	NA
WP_044248651.1\|1314615_1314879_+	DNA-binding protein	Q2A099	Sodalis_phage	3.5e-11	41.2
WP_152334767.1\|1314927_1315338_-	hypothetical protein	NA	NA	NA	NA
WP_011908314.1\|1315563_1315839_+	hypothetical protein	NA	NA	NA	NA
WP_011908315.1\|1315838_1316123_+	hypothetical protein	NA	NA	NA	NA
WP_011908316.1\|1316124_1316991_+	chromosome partitioning protein ParB	A0A1B0T6M1	Pelagibaca_phage	2.1e-84	62.7
WP_011908317.1\|1316987_1319105_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P6Z4	Rhodovulum_phage	4.6e-186	46.9
WP_011908318.1\|1319149_1319932_+	ATP-binding protein	M4SPU5	Rhodobacter_phage	2.1e-59	47.3
WP_011908319.1\|1319934_1320516_+	hypothetical protein	NA	NA	NA	NA
WP_011908320.1\|1320512_1320893_+	hypothetical protein	A0A1B0T6M5	Pelagibaca_phage	9.1e-37	57.1
WP_011908321.1\|1320889_1321351_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_011908322.1\|1321531_1322194_+	DUF3164 family protein	M4STB6	Rhodobacter_phage	1.1e-85	70.4
WP_044247978.1\|1322201_1322399_+	hypothetical protein	NA	NA	NA	NA
WP_044247979.1\|1322402_1322636_+	hypothetical protein	NA	NA	NA	NA
WP_011908324.1\|1322632_1323070_+	regulatory protein GemA	A0A1B1P720	Rhodovulum_phage	1.1e-46	67.1
WP_011908326.1\|1323374_1323980_+	S-adenosylmethionine-binding protein	M4SPS7	Rhodobacter_phage	1.9e-73	67.5
WP_011908327.1\|1323976_1324348_+	hypothetical protein	M4SNV1	Rhodobacter_phage	3.4e-28	54.0
WP_011908328.1\|1324371_1325418_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	3.8e-24	25.4
WP_011908329.1\|1325606_1326479_+	SH3 domain-containing protein	A0A1B0T6L3	Pelagibaca_phage	4.1e-101	64.1
WP_011908330.1\|1326491_1326923_+	hypothetical protein	NA	NA	NA	NA
WP_011908331.1\|1326919_1327270_+	DUF2730 family protein	A0A1B0T6K8	Pelagibaca_phage	1.1e-17	47.9
WP_011908332.1\|1327266_1327572_+	hypothetical protein	A0A1B1P718	Rhodovulum_phage	6.6e-22	58.4
WP_011908333.1\|1327573_1328113_+	DUF3486 family protein	A0A1B0T6K5	Pelagibaca_phage	3.3e-72	78.8
WP_152334768.1\|1328109_1328778_+	DUF2786 domain-containing protein	G8GWD1	Rhodobacter_phage	7.1e-69	65.3
WP_011908335.1\|1328774_1330205_+\|terminase	terminase	A0A1B1P714	Rhodovulum_phage	7.0e-207	80.9
WP_011908336.1\|1330204_1330549_+	hypothetical protein	NA	NA	NA	NA
WP_011908337.1\|1330550_1332182_+	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	6.9e-182	60.5
WP_044248655.1\|1332168_1333392_+\|head	phage head protein	A0A1B0T6H8	Thiobacimonas_phage	3.9e-105	69.6
WP_152334769.1\|1333316_1333886_+	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	1.2e-32	45.8
WP_052292669.1\|1334035_1335043_+	hypothetical protein	M4SNT6	Rhodobacter_phage	2.0e-70	49.1
WP_011908341.1\|1335042_1335489_+	hypothetical protein	M4ST95	Rhodobacter_phage	7.9e-40	63.1
WP_011908342.1\|1335500_1336397_+\|head	head protein	M4SRT6	Rhodobacter_phage	8.2e-129	74.5
WP_011908343.1\|1336406_1336802_+	hypothetical protein	A0A1B0T6E5	Thiobacimonas_phage	7.5e-10	64.4
WP_011908344.1\|1336905_1337334_+	DUF1320 domain-containing protein	M4SPQ8	Rhodobacter_phage	1.5e-32	50.7
WP_011908345.1\|1337333_1337765_+	hypothetical protein	M4SNT0	Rhodobacter_phage	1.6e-21	39.4
WP_011908346.1\|1337906_1338839_+	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	1.3e-92	53.5
WP_011908347.1\|1338858_1339188_+	hypothetical protein	G8EY05	Synechococcus_phage	3.8e-07	36.6
WP_011908348.1\|1339253_1339541_+	hypothetical protein	NA	NA	NA	NA
WP_011908349.1\|1339537_1341745_+	hypothetical protein	A0A1B0T6D4	Thiobacimonas_phage	3.3e-22	31.5
WP_011908350.1\|1341744_1342401_+	hypothetical protein	G8DH55	Emiliania_huxleyi_virus	1.9e-34	43.7
WP_011908351.1\|1342405_1343062_+	hypothetical protein	A0A0U2C133	Paracoccus_phage	1.6e-36	42.1
WP_011908352.1\|1343058_1343466_+	hypothetical protein	G8DH57	Emiliania_huxleyi_virus	1.1e-32	54.8
WP_011908353.1\|1343462_1347128_+	hypothetical protein	A0A0U2C146	Paracoccus_phage	2.3e-137	41.8
WP_011908354.1\|1347127_1347721_+	hypothetical protein	NA	NA	NA	NA
WP_044248198.1\|1347717_1349010_+	hypothetical protein	NA	NA	NA	NA
WP_011908356.1\|1349018_1349351_+	hypothetical protein	NA	NA	NA	NA
WP_011908357.1\|1349350_1350403_+	hypothetical protein	A0A248XD67	Klebsiella_phage	1.9e-55	36.9
WP_011908358.1\|1350470_1350821_+	diversity-generating retroelement protein Avd	A0A0N7ACE0	Bacillus_phage	2.4e-28	56.0
WP_152334770.1\|1350813_1351110_+	hypothetical protein	A0A1I9KFG3	Aeromonas_phage	1.9e-13	64.1
WP_011908359.1\|1351109_1352210_+	RNA-directed DNA polymerase	D4HTV9	Vibrio_phage	3.5e-89	49.8
WP_085996560.1\|1352464_1352986_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_011908361.1\|1353013_1353835_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	5.8e-20	31.7
WP_011908362.1\|1353831_1354164_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_011908363.1\|1354160_1355108_+	D-glycerate dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	2.4e-17	27.6
WP_011908364.1\|1361631_1361823_-	hypothetical protein	NA	NA	NA	NA
WP_011908365.1\|1362035_1363112_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011908366.1\|1363692_1364730_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	5.1e-74	47.0
WP_011908367.1\|1364722_1365715_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.8e-45	37.6
WP_011908368.1\|1365698_1367582_+	glycosyltransferase	M1GWE6	Acanthocystis_turfacea_Chlorella_virus	5.3e-77	41.1
WP_085996605.1\|1367624_1368509_+	beta-mannosidase	NA	NA	NA	NA
WP_044247992.1\|1368729_1369014_+	hypothetical protein	NA	NA	NA	NA
WP_011908370.1\|1369114_1370254_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_011908371.1\|1370250_1371285_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_011908372.1\|1371281_1372154_+	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	1.6e-20	31.3
WP_011908373.1\|1372341_1373019_+	hypothetical protein	NA	NA	NA	NA
WP_011908374.1\|1373131_1374442_-	hypothetical protein	NA	NA	NA	NA
WP_011908375.1\|1374438_1375557_-	AAA family ATPase	A0A223W083	Agrobacterium_phage	8.1e-25	34.7
WP_011908376.1\|1375867_1377355_+	sensor histidine kinase	NA	NA	NA	NA
WP_011908377.1\|1377351_1377789_+	response regulator	NA	NA	NA	NA
WP_011908378.1\|1377785_1378838_+	response regulator	NA	NA	NA	NA
WP_011908379.1\|1378920_1380330_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_011908380.1\|1380411_1380750_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_044247996.1\|1380948_1381623_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_044247998.1\|1381619_1382447_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_011908381.1\|1382463_1382934_-	hypothetical protein	NA	NA	NA	NA
WP_011908382.1\|1383243_1384578_+	trigger factor	NA	NA	NA	NA
WP_011908383.1\|1384780_1385350_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002720283.1\|1385360_1385588_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_011908384.1\|1385608_1386007_-	30S ribosomal protein S6	NA	NA	NA	NA
1386198:1386239	attL	NA	NA	NA	NA
WP_011908385.1\|1386542_1386827_+	hypothetical protein	NA	NA	NA	NA
WP_011908386.1\|1386823_1388236_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	4.5e-97	43.9
WP_152334771.1\|1388724_1388955_+	DNA-binding protein	NA	NA	NA	NA
WP_011908388.1\|1389039_1390221_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.8e-36	30.3
WP_011908389.1\|1390210_1390606_+	hypothetical protein	NA	NA	NA	NA
WP_011908390.1\|1390605_1391121_+\|head,protease	HK97 family phage prohead protease	A0A0R6PIR7	Moraxella_phage	2.6e-18	39.4
WP_011908391.1\|1391120_1392278_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.1e-51	33.2
WP_152334772.1\|1392289_1392649_+	helix-turn-helix domain-containing protein	A0A1B0T6G2	Thiobacimonas_phage	4.0e-18	48.1
WP_011908393.1\|1392661_1393039_+	hypothetical protein	NA	NA	NA	NA
WP_011908394.1\|1393038_1393395_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	9.5e-20	55.8
WP_011908395.1\|1393394_1393874_+	hypothetical protein	NA	NA	NA	NA
WP_011908396.1\|1393878_1394343_+	hypothetical protein	NA	NA	NA	NA
WP_011908397.1\|1394352_1394664_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011908398.1\|1394663_1395077_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_011908399.1\|1395073_1395487_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011908400.1\|1395486_1395810_+\|head	phage head closure protein	NA	NA	NA	NA
WP_011908401.1\|1395809_1396241_+\|terminase	phage terminase small subunit P27 family	Q8W6V0	Burkholderia_virus	6.3e-10	34.5
WP_011908402.1\|1396237_1397845_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	7.2e-75	34.8
WP_011908403.1\|1397854_1400239_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	1.5e-55	53.3
WP_011908404.1\|1400242_1400596_+	hypothetical protein	NA	NA	NA	NA
WP_011908405.1\|1400600_1401128_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044248004.1\|1401184_1401445_+	hypothetical protein	NA	NA	NA	NA
WP_011908406.1\|1401441_1401873_+	hypothetical protein	NA	NA	NA	NA
WP_044248006.1\|1401936_1402140_+	hypothetical protein	NA	NA	NA	NA
WP_152334791.1\|1402463_1403147_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011908408.1\|1403632_1404856_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
1403231:1403272	attR	NA	NA	NA	NA
WP_011908409.1\|1405025_1406069_+	cytochrome-c peroxidase	NA	NA	NA	NA
WP_011908410.1\|1406171_1407191_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011908411.1\|1407218_1408019_-	ABC transporter permease	NA	NA	NA	NA
WP_011908412.1\|1408011_1408902_-	ABC transporter permease	NA	NA	NA	NA
WP_011908414.1\|1410445_1412413_+	TonB-dependent receptor	NA	NA	NA	NA
WP_044248674.1\|1412399_1413260_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011908416.1\|1413256_1414246_+	iron ABC transporter permease	NA	NA	NA	NA
WP_011908417.1\|1414242_1414995_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	2.9e-10	29.1
WP_011908418.1\|1414991_1415636_+	adenosylcobinamide amidohydrolase	NA	NA	NA	NA
WP_011908419.1\|1415702_1416704_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011908420.1\|1417057_1418029_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_011908421.1\|1418492_1419992_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011908422.1\|1420094_1420988_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011908423.1\|1421038_1421473_+	CBS domain-containing protein	NA	NA	NA	NA
WP_011908424.1\|1421542_1422031_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.2e-33	48.1
WP_011908425.1\|1422116_1422272_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_011908426.1\|1422511_1423273_+	MotA/TolQ/ExbB proton channel	NA	NA	NA	NA
WP_011908427.1\|1423280_1424384_+	OmpA family protein	NA	NA	NA	NA
WP_011908428.1\|1424588_1424996_+	hypothetical protein	NA	NA	NA	NA
WP_011908429.1\|1425015_1426860_+	flagellin biosynthesis protein FlgM	NA	NA	NA	NA
WP_011908430.1\|1426983_1427970_+	hemin-degrading factor	NA	NA	NA	NA
WP_044248009.1\|1428173_1428395_+	hypothetical protein	NA	NA	NA	NA
WP_011908432.1\|1428507_1429701_+	cytochrome	NA	NA	NA	NA
WP_011908433.1\|1429815_1430388_-	YceI family protein	NA	NA	NA	NA
WP_011908434.1\|1430815_1431979_-	MFS transporter	NA	NA	NA	NA
WP_011908435.1\|1431975_1432689_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	9.9e-85	69.6
WP_011908436.1\|1432685_1433723_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_011908437.1\|1433722_1434166_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011908438.1\|1434158_1434491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011908439.1\|1434722_1435001_+	winged helix-turn-helix transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.9e-12	41.9
WP_011908440.1\|1434997_1435996_+	permease	NA	NA	NA	NA
WP_011908441.1\|1436011_1436239_+	thioredoxin family protein	NA	NA	NA	NA
WP_011908442.1\|1436352_1437165_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_011908443.1\|1437164_1438172_+	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_044248683.1\|1438281_1439517_+	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA
WP_152334792.1\|1439999_1441052_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.5e-38	43.9
WP_011908446.1\|1441876_1443982_-	TniQ family protein	NA	NA	NA	NA
WP_085996597.1\|1444553_1444853_+\|transposase	transposase	NA	NA	NA	NA
WP_080517426.1\|1444750_1445104_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085996597.1\|1445250_1445550_+\|transposase	transposase	NA	NA	NA	NA
WP_011907237.1\|1445546_1445900_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011907238.1\|1445968_1447540_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0

DBSCAN-SWA_7

1463931 : 1515882

Bacillus_phage(37.5%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011908457.1\|1463931_1465578_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_080517427.1\|1466284_1467496_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.2e-11	26.6
WP_011908460.1\|1467826_1469044_-\|transposase	IS5-like element ISRhsp7 family transposase	NA	NA	NA	NA
WP_080517428.1\|1470451_1470673_+\|transposase	transposase	NA	NA	NA	NA
WP_011908466.1\|1473189_1474131_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011908467.1\|1474171_1475491_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_044248024.1\|1475576_1476044_-	CAP domain-containing protein	A0A0E3T7R5	Bacillus_phage	5.1e-13	33.1
WP_011908469.1\|1476109_1476769_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_011908470.1\|1476765_1478454_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_011908471.1\|1478450_1479656_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044248026.1\|1479768_1480377_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_011908473.1\|1480520_1481153_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.8e-61	61.5
WP_011908474.1\|1481277_1482543_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.1e-134	58.6
WP_011908475.1\|1482668_1483043_+	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_011908476.1\|1483042_1483513_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_011908477.1\|1483509_1483881_+	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_011908478.1\|1483829_1484474_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_011908479.1\|1484493_1485840_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_011908480.1\|1485847_1486339_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_085996561.1\|1486609_1487947_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011908482.1\|1488010_1488550_+	DedA family protein	NA	NA	NA	NA
WP_011908483.1\|1488622_1489927_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_011908484.1\|1489939_1490551_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_011908485.1\|1490716_1491349_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011908486.1\|1491484_1492744_+	Zn-dependent hydrolase	NA	NA	NA	NA
WP_011908487.1\|1492870_1494322_+	dihydropyrimidinase	NA	NA	NA	NA
WP_011908488.1\|1494321_1495119_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_011908489.1\|1495128_1495992_+	ABC transporter permease	NA	NA	NA	NA
WP_011908490.1\|1495988_1496840_+	ABC transporter permease	NA	NA	NA	NA
WP_011908491.1\|1496868_1497849_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011908492.1\|1497982_1499764_+	dihydroxy-acid dehydratase family protein	NA	NA	NA	NA
WP_011908493.1\|1499832_1500774_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_011908494.1\|1500990_1501734_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.9e-17	33.5
WP_011908495.1\|1501743_1502589_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_011908496.1\|1502708_1503995_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011908497.1\|1504122_1504491_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-16	36.4
WP_011908498.1\|1504487_1504778_+	hypothetical protein	NA	NA	NA	NA
WP_011908499.1\|1504777_1507462_+	sodium:solute symporter	W8CYF6	Bacillus_phage	2.2e-20	28.7
WP_044248030.1\|1507517_1508468_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_011908501.1\|1508478_1508910_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_011908502.1\|1509079_1509397_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_152334793.1\|1509384_1509603_+	hypothetical protein	NA	NA	NA	NA
WP_011908504.1\|1509667_1509883_-	hypothetical protein	NA	NA	NA	NA
WP_011908505.1\|1510042_1510297_+	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	4.1e-25	76.6
WP_011908506.1\|1510470_1512144_+	iron ABC transporter permease	NA	NA	NA	NA
WP_011908507.1\|1512448_1512922_-	CinA family protein	NA	NA	NA	NA
WP_011908508.1\|1512918_1513416_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_011908509.1\|1513412_1513892_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011908510.1\|1514010_1514688_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011908511.1\|1514901_1515882_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA

DBSCAN-SWA_8

1767787 : 1799435

Rhodobacter_phage(41.67%)

portal,tail,capsid,head,terminase,integrase

attL 1770099:1770143|attR 1807408:1807452

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011908741.1\|1767787_1768561_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.7e-10	31.7
WP_085996613.1\|1768560_1769625_-	MlaE family lipid ABC transporter permease subunit	NA	NA	NA	NA
1770099:1770143	attL	NA	NA	NA	NA
WP_011908743.1\|1770206_1771205_-\|integrase	site-specific integrase	A0A1B1IVT4	uncultured_Mediterranean_phage	3.4e-06	25.7
WP_011908744.1\|1771356_1771626_-	DUF4031 domain-containing protein	D4FUN1	Pseudomonas_phage	1.8e-18	56.5
WP_011908745.1\|1771622_1771874_-	hypothetical protein	NA	NA	NA	NA
WP_011908746.1\|1771870_1772515_-	HNH endonuclease	A0A1S5SEZ9	Streptococcus_phage	9.1e-21	38.7
WP_011908747.1\|1772511_1772751_-	hypothetical protein	A0A1V0E8D1	Vibrio_phage	1.5e-08	52.2
WP_011908748.1\|1772747_1773053_-	hypothetical protein	A0A1B0T6L5	Pelagibaca_phage	2.5e-05	36.7
WP_011908749.1\|1773045_1773390_-	DUF4326 domain-containing protein	A0A088FBM0	Mycobacterium_phage	1.8e-20	44.3
WP_044248098.1\|1773382_1773622_-	hypothetical protein	NA	NA	NA	NA
WP_011908750.1\|1773614_1774805_-	phage Gp37/Gp68 family protein	I3UM26	Rhodobacter_phage	2.5e-93	48.6
WP_052292673.1\|1774797_1775076_-	hypothetical protein	NA	NA	NA	NA
WP_044248100.1\|1775077_1775257_-	hypothetical protein	NA	NA	NA	NA
WP_011908752.1\|1775249_1775738_-	restriction alleviation protein, Lar family	L7TKP8	Pseudomonas_virus	3.5e-25	41.6
WP_011908753.1\|1775724_1775982_-	hypothetical protein	NA	NA	NA	NA
WP_011908754.1\|1775978_1776242_-	hypothetical protein	NA	NA	NA	NA
WP_011908755.1\|1776246_1776633_-	hypothetical protein	NA	NA	NA	NA
WP_085996567.1\|1776629_1776776_-	hypothetical protein	NA	NA	NA	NA
WP_044248740.1\|1777006_1777282_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	4.4e-25	68.9
WP_011908757.1\|1777398_1777722_-	hypothetical protein	NA	NA	NA	NA
WP_044248103.1\|1777718_1777958_-	hypothetical protein	NA	NA	NA	NA
WP_011908758.1\|1777954_1778434_-	hypothetical protein	NA	NA	NA	NA
WP_011908759.1\|1778646_1779381_-	hypothetical protein	NA	NA	NA	NA
WP_044248107.1\|1779501_1779861_-	hypothetical protein	NA	NA	NA	NA
WP_152334796.1\|1780096_1780357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152334775.1\|1780467_1780692_+	hypothetical protein	NA	NA	NA	NA
WP_011908763.1\|1780691_1781030_+	hypothetical protein	NA	NA	NA	NA
WP_011908764.1\|1781026_1781269_+	hypothetical protein	NA	NA	NA	NA
WP_011908765.1\|1781581_1782055_+	hypothetical protein	NA	NA	NA	NA
WP_011908766.1\|1782051_1782345_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_011908767.1\|1782334_1782979_+	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_011908768.1\|1783198_1783792_+	hypothetical protein	NA	NA	NA	NA
WP_044248743.1\|1783791_1784460_+	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	8.0e-36	40.4
WP_044248112.1\|1784567_1784933_+	HNH endonuclease	I3ULZ4	Rhodobacter_phage	5.3e-34	76.7
WP_011908771.1\|1785026_1785521_+	hypothetical protein	NA	NA	NA	NA
WP_011908772.1\|1785520_1787233_+\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	6.0e-128	45.7
WP_011908773.1\|1787235_1788498_+\|portal	phage portal protein	I3ULZ7	Rhodobacter_phage	4.8e-159	65.7
WP_011908774.1\|1788509_1789454_+	S49 family peptidase	I3ULZ8	Rhodobacter_phage	1.8e-102	67.0
WP_011908775.1\|1789456_1790764_+\|capsid	phage major capsid protein	I3ULZ9	Rhodobacter_phage	7.9e-173	73.0
WP_011908776.1\|1790831_1791293_+	hypothetical protein	I3UM00	Rhodobacter_phage	9.6e-49	69.1
WP_011908777.1\|1791507_1791990_+	hypothetical protein	NA	NA	NA	NA
WP_011908778.1\|1791989_1792346_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011908779.1\|1792342_1792750_+	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	3.4e-21	44.8
WP_011908780.1\|1792891_1793335_+	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	1.3e-15	37.9
WP_152334776.1\|1793388_1793847_+	hypothetical protein	NA	NA	NA	NA
WP_044248114.1\|1793843_1794260_+	gene transfer agent family protein	NA	NA	NA	NA
WP_152334777.1\|1794427_1794988_-	hypothetical protein	A0A0H3UZD5	Geobacillus_virus	5.5e-06	45.6
WP_011908783.1\|1795010_1797776_+\|tail	phage tail tape measure protein	A0A2H4GY14	Pseudomonas_phage	3.6e-42	39.4
WP_011908784.1\|1797775_1798435_+	hypothetical protein	I3UM12	Rhodobacter_phage	1.2e-52	51.6
WP_011908785.1\|1798431_1799019_+	hypothetical protein	I3UM13	Rhodobacter_phage	6.3e-45	47.3
WP_052292660.1\|1799015_1799435_+	hypothetical protein	I3UM14	Rhodobacter_phage	1.4e-30	46.7
1807408:1807452	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1845386 : 1870786

Bacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152334798.1\|1845386_1845830_-\|transposase	transposase	NA	NA	NA	NA
WP_011908822.1\|1845795_1847079_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	1.4e-20	25.3
WP_044248129.1\|1849154_1849607_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080517433.1\|1850419_1850656_-	hypothetical protein	NA	NA	NA	NA
WP_011908826.1\|1851043_1851445_-	hypothetical protein	NA	NA	NA	NA
WP_085996597.1\|1851664_1851964_+\|transposase	transposase	NA	NA	NA	NA
WP_011907237.1\|1851960_1852314_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011908828.1\|1853475_1854207_-	ATPase AAA	K4HZD4	Acidithiobacillus_phage	8.9e-65	52.1
WP_152334779.1\|1854219_1855737_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.6e-132	49.6
WP_044248131.1\|1856718_1857180_-	hypothetical protein	NA	NA	NA	NA
WP_011907123.1\|1857249_1858209_+\|transposase	IS481 family transposase	A0A126QCH6	Murine_leukemia_virus	8.0e-05	31.2
WP_011908832.1\|1859333_1859732_-	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	1.5e-45	64.1
WP_044248133.1\|1859745_1859946_-	hypothetical protein	NA	NA	NA	NA
WP_044248135.1\|1860014_1860293_-	hypothetical protein	NA	NA	NA	NA
WP_011908834.1\|1860289_1860928_-	exonuclease	K7ZRM9	Xanthomonas_citri_phage	2.6e-44	48.3
WP_011908835.1\|1860924_1861662_-	DNA single-strand annealing protein	K7ZLF1	Xanthomonas_citri_phage	2.2e-26	36.9
WP_080517434.1\|1862490_1862913_+	hypothetical protein	NA	NA	NA	NA
WP_152334799.1\|1863007_1865806_-	AAA family ATPase	NA	NA	NA	NA
WP_044248138.1\|1866158_1866746_-	hypothetical protein	NA	NA	NA	NA
WP_152334780.1\|1867247_1867451_-	hypothetical protein	NA	NA	NA	NA
WP_011908839.1\|1867541_1867796_+	hypothetical protein	NA	NA	NA	NA
WP_011908840.1\|1867800_1868109_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011908822.1\|1869502_1870786_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	1.4e-20	25.3

DBSCAN-SWA_10

2122461 : 2159351

Rhodobacter_phage(29.41%)

head,terminase,integrase,transposase

attL 2126924:2126940|attR 2166641:2166657

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011908357.1\|2122461_2123514_-	hypothetical protein	A0A248XD67	Klebsiella_phage	1.9e-55	36.9
WP_011908356.1\|2123513_2123846_-	hypothetical protein	NA	NA	NA	NA
WP_044248198.1\|2123854_2125147_-	hypothetical protein	NA	NA	NA	NA
WP_011908354.1\|2125143_2125737_-	hypothetical protein	NA	NA	NA	NA
WP_011908353.1\|2125736_2129402_-	hypothetical protein	A0A0U2C146	Paracoccus_phage	2.3e-137	41.8
2126924:2126940	attL	NA	NA	NA	NA
WP_011908352.1\|2129398_2129806_-	hypothetical protein	G8DH57	Emiliania_huxleyi_virus	1.1e-32	54.8
WP_011908351.1\|2129802_2130459_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	1.6e-36	42.1
WP_011908350.1\|2130463_2131120_-	hypothetical protein	G8DH55	Emiliania_huxleyi_virus	1.9e-34	43.7
WP_011908349.1\|2131119_2133327_-	hypothetical protein	A0A1B0T6D4	Thiobacimonas_phage	3.3e-22	31.5
WP_011908348.1\|2133323_2133611_-	hypothetical protein	NA	NA	NA	NA
WP_011908347.1\|2133676_2134006_-	hypothetical protein	G8EY05	Synechococcus_phage	3.8e-07	36.6
WP_011908346.1\|2134025_2134958_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	1.3e-92	53.5
WP_011908345.1\|2135099_2135531_-	hypothetical protein	M4SNT0	Rhodobacter_phage	1.6e-21	39.4
WP_011908344.1\|2135530_2135959_-	DUF1320 domain-containing protein	M4SPQ8	Rhodobacter_phage	1.5e-32	50.7
WP_011908343.1\|2136062_2136458_-	hypothetical protein	A0A1B0T6E5	Thiobacimonas_phage	7.5e-10	64.4
WP_011908342.1\|2136467_2137364_-\|head	head protein	M4SRT6	Rhodobacter_phage	8.2e-129	74.5
WP_011908341.1\|2137375_2137822_-	hypothetical protein	M4ST95	Rhodobacter_phage	7.9e-40	63.1
WP_052292669.1\|2137821_2138829_-	hypothetical protein	M4SNT6	Rhodobacter_phage	2.0e-70	49.1
WP_152334769.1\|2138978_2139548_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	1.2e-32	45.8
WP_044248655.1\|2139472_2140696_-\|head	phage head protein	A0A1B0T6H8	Thiobacimonas_phage	3.9e-105	69.6
WP_011908337.1\|2140682_2142314_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	6.9e-182	60.5
WP_011908336.1\|2142315_2142660_-	hypothetical protein	NA	NA	NA	NA
WP_011908335.1\|2142659_2144090_-\|terminase	terminase	A0A1B1P714	Rhodovulum_phage	7.0e-207	80.9
WP_152334768.1\|2144086_2144755_-	DUF2786 domain-containing protein	G8GWD1	Rhodobacter_phage	7.1e-69	65.3
WP_011908333.1\|2144751_2145291_-	DUF3486 family protein	A0A1B0T6K5	Pelagibaca_phage	3.3e-72	78.8
WP_011908332.1\|2145292_2145598_-	hypothetical protein	A0A1B1P718	Rhodovulum_phage	6.6e-22	58.4
WP_011908331.1\|2145594_2145945_-	DUF2730 family protein	A0A1B0T6K8	Pelagibaca_phage	1.1e-17	47.9
WP_011908330.1\|2145941_2146373_-	hypothetical protein	NA	NA	NA	NA
WP_011908329.1\|2146385_2147258_-	SH3 domain-containing protein	A0A1B0T6L3	Pelagibaca_phage	4.1e-101	64.1
WP_011908328.1\|2147446_2148493_+	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	3.8e-24	25.4
WP_011908327.1\|2148516_2148888_-	hypothetical protein	M4SNV1	Rhodobacter_phage	3.4e-28	54.0
WP_011908326.1\|2148884_2149490_-	S-adenosylmethionine-binding protein	M4SPS7	Rhodobacter_phage	1.9e-73	67.5
WP_011908324.1\|2149794_2150232_-	regulatory protein GemA	A0A1B1P720	Rhodovulum_phage	1.1e-46	67.1
WP_044247979.1\|2150228_2150462_-	hypothetical protein	NA	NA	NA	NA
WP_044247978.1\|2150465_2150663_-	hypothetical protein	NA	NA	NA	NA
WP_011908322.1\|2150670_2151333_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	1.1e-85	70.4
WP_011908321.1\|2151513_2151975_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_011908320.1\|2151971_2152352_-	hypothetical protein	A0A1B0T6M5	Pelagibaca_phage	9.1e-37	57.1
WP_011908319.1\|2152348_2152930_-	hypothetical protein	NA	NA	NA	NA
WP_011908318.1\|2152932_2153715_-	ATP-binding protein	M4SPU5	Rhodobacter_phage	2.1e-59	47.3
WP_011908317.1\|2153759_2155877_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P6Z4	Rhodovulum_phage	4.6e-186	46.9
WP_011908316.1\|2155873_2156740_-	chromosome partitioning protein ParB	A0A1B0T6M1	Pelagibaca_phage	2.1e-84	62.7
WP_011908315.1\|2156741_2157026_-	hypothetical protein	NA	NA	NA	NA
WP_011908314.1\|2157025_2157301_-	hypothetical protein	NA	NA	NA	NA
WP_152334767.1\|2157526_2157937_+	hypothetical protein	NA	NA	NA	NA
WP_044248651.1\|2157985_2158249_-	DNA-binding protein	Q2A099	Sodalis_phage	3.5e-11	41.2
WP_011909090.1\|2158269_2158569_-	hypothetical protein	NA	NA	NA	NA
WP_011909091.1\|2158655_2159351_+	helix-turn-helix transcriptional regulator	A0A1B0T6N0	Pelagibaca_phage	6.1e-55	49.8
2166641:2166657	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_009430

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37867 : 76231

Wolbachia_phage(28.57%)

transposase,integrase

attL 18081:18096|attR 46914:46929

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
18081:18096	attL	NA	NA	NA	NA
WP_011911080.1\|37867_38353_-\|transposase	transposase	NA	NA	NA	NA
WP_080517492.1\|38381_39119_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011911078.1\|39140_40190_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	3.9e-05	29.0
WP_011911077.1\|40353_40935_-\|transposase	transposase	NA	NA	NA	NA
WP_080517493.1\|41261_41558_+	transketolase	NA	NA	NA	NA
WP_011911073.1\|42679_43963_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_011911072.1\|44476_45472_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.0e-39	34.3
WP_011911071.1\|45474_46353_+	phosphoribulokinase	NA	NA	NA	NA
WP_011911070.1\|46413_48387_+	transketolase	NA	NA	NA	NA
46914:46929	attR	NA	NA	NA	NA
WP_011911069.1\|48397_49399_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011911068.1\|49479_50544_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA
WP_011911067.1\|50570_51956_+	ribulose-bisphosphate carboxylase	NA	NA	NA	NA
WP_044249665.1\|52094_53411_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011911065.1\|53420_53774_+	hypothetical protein	NA	NA	NA	NA
WP_044249667.1\|59882_60182_-	hypothetical protein	NA	NA	NA	NA
WP_152334857.1\|60909_61227_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.7e-05	47.9
WP_011911055.1\|61326_62739_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.0e-61	33.3
WP_011911062.1\|62823_63063_-	hypothetical protein	NA	NA	NA	NA
WP_152334858.1\|64349_65171_-	hypothetical protein	NA	NA	NA	NA
WP_011911058.1\|65167_65554_-	FixH family protein	NA	NA	NA	NA
WP_044249669.1\|65573_66677_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_152334859.1\|66809_67196_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_011911055.1\|67303_68716_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.0e-61	33.3
WP_011911054.1\|68718_71703_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_011911053.1\|71927_72497_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_152334872.1\|72597_74163_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_101341203.1\|74236_74707_-	dUTP diphosphatase	G9E5L4	Ostreococcus_lucimarinus_virus	4.9e-32	49.7
WP_011911050.1\|74884_76231_-\|transposase	IS5-like element ISRhsp1 family transposase	K4ICS3	Acidithiobacillus_phage	8.5e-53	45.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_009431

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10910 : 66723

Morganella_phage(18.18%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152334877.1\|10910_11786_-\|protease	viral aspartic protease	NA	NA	NA	NA
WP_011911122.1\|12041_13280_+	Hsp70 family protein	NA	NA	NA	NA
WP_152334885.1\|13586_13871_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_011911124.1\|14080_14584_+	hypothetical protein	NA	NA	NA	NA
WP_011911125.1\|14698_15466_+	7-alpha-hydroxysteroid dehydrogenase	A0A0M4JSW6	Mollivirus	5.6e-09	34.4
WP_011911126.1\|15506_16301_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_152334878.1\|16263_16674_+	hypothetical protein	NA	NA	NA	NA
WP_011911127.1\|16858_17065_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.7e-11	54.0
WP_011911128.1\|17316_17691_-	hypothetical protein	NA	NA	NA	NA
WP_044249854.1\|17787_18063_-	hypothetical protein	NA	NA	NA	NA
WP_152334879.1\|18327_18600_-	hypothetical protein	NA	NA	NA	NA
WP_044249857.1\|18586_18796_+	hypothetical protein	NA	NA	NA	NA
WP_011911130.1\|18992_19229_-	hypothetical protein	NA	NA	NA	NA
WP_044249885.1\|19951_20287_-	DUF2218 domain-containing protein	NA	NA	NA	NA
WP_011911132.1\|20412_21294_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044249859.1\|21290_22238_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.9e-46	38.4
WP_011911134.1\|22230_23175_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_011911135.1\|23171_23930_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	2.1e-16	31.7
WP_011911136.1\|24083_26018_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011911138.1\|26873_27569_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_011911139.1\|27661_28411_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_152334886.1\|28737_30324_+	c-type cytochrome	NA	NA	NA	NA
WP_011911141.1\|30388_32872_+	trimethylamine-N-oxide reductase TorA	NA	NA	NA	NA
WP_044249865.1\|33048_33984_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_011911143.1\|34212_34653_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_011911145.1\|35334_37002_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_152334887.1\|37262_37901_+	biliverdin-producing heme oxygenase	NA	NA	NA	NA
WP_011911147.1\|37981_40792_+	EAL domain-containing protein	B5LWN8	Feldmannia_species_virus	3.4e-19	33.7
WP_152334880.1\|40916_42464_-	glycosyl transferase family protein	NA	NA	NA	NA
WP_101342038.1\|42584_44609_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.8e-14	33.0
WP_011911150.1\|44881_46186_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_011911151.1\|46175_46604_-	hypothetical protein	NA	NA	NA	NA
WP_011911153.1\|48767_50831_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-09	26.2
WP_011911155.1\|52622_52829_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	7.9e-11	54.0
WP_152334888.1\|52943_53222_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_080517502.1\|53385_53610_+	hypothetical protein	NA	NA	NA	NA
WP_044249869.1\|53651_54035_+	hypothetical protein	NA	NA	NA	NA
WP_011911160.1\|55612_55837_+	hypothetical protein	NA	NA	NA	NA
WP_011911161.1\|55833_56226_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_011911162.1\|56324_57005_+	recombinase family protein	A0A0F7L6S1	uncultured_marine_virus	5.6e-37	45.4
WP_152334881.1\|58746_59310_+	hypothetical protein	NA	NA	NA	NA
WP_152334882.1\|59290_59971_+\|transposase	transposase	NA	NA	NA	NA
WP_085996646.1\|59967_60162_-	hypothetical protein	NA	NA	NA	NA
WP_044249872.1\|60228_60441_+	hypothetical protein	NA	NA	NA	NA
WP_085996597.1\|60609_60909_+\|transposase	transposase	NA	NA	NA	NA
WP_011911165.1\|60905_61259_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011907238.1\|61327_62899_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011907238.1\|64433_66005_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-77	35.0
WP_011907237.1\|66073_66427_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_085996597.1\|66423_66723_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage