CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009437	Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence	13 crisprs	WYL,csx20,csx1,cas8b1,cas7b,cas5,cas4,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas14j,csa3,cas7,cas3,cas14k,csx19,c2c9_V-U4,DEDDh,cas8b2	0	20	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009437_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_1

41743-41902

Orphan

Consensus_repeat	Method
CTGTTTCAATCCCCAAAGGGGAGGCTACAAAC	PILER-CR

2 spacers

csx20,csx1

The CRISPR arrays of NC_009437_1

>merge|NC_009437|1|41743-41902|PILER-CR
GTTTCAATCCCCAAAGGGCAGGCTACAAACATGAGTCACCTGACTTTCCCAGGTTGCAAATAGCTGTTTCAATCCCCAAAGGGGAGGCTACAAACTTAAAGTTAGATGAAGAGACAGCAAGAGCTTTCCTGTTTCAATCCCCAAAGGGGAGGCTACAAAC

>NC_009437|1|1|41743-41902|PILER-CR
GTTTCAATCCCCAAAGGGCAGGCTACAAACAT	GAGTCACCTGACTTTCCCAGGTTGCAAATAGCT
GTTTCAATCCCCAAAGGGGAGGCTACAAACTT	AAAGTTAGATGAAGAGACAGCAAGAGCTTTCCT
GTTTCAATCCCCAAAGGGGAGGCTACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915664.1\|45920_46319_+\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_009437.1\|WP_011915668.1\|50668_51598_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915650.1\|30181_30442_-\|stage-V-sporulation-protein-S	unknown	unknown	gnl\|CDD\|377254
NC_009437.1\|WP_011915662.1\|43297_44776_+\|IS21-like-element-ISCsa9-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_009437.1\|WP_011915653.1\|31977_32790_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915659.1\|40292_41162_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NC_009437.1\|WP_011915655.1\|36587_37943_+\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|237087
NC_009437.1\|WP_049754820.1\|34263_34497_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372570
NC_009437.1\|WP_011915663.1\|44772_45564_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915651.1\|30619_31333_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915661.1\|42372_42546_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235562
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_009437.1\|WP_041722411.1\|42515_42695_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915658.1\|39705_40275_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_009437.1\|WP_011915649.1\|29694_30090_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NC_009437.1\|WP_049754856.1\|31445_31883_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915648.1\|26441_29489_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	6.70966e-145
NC_009437.1\|WP_011915650.1\|30181_30442_-\|stage-V-sporulation-protein-S	gnl\|CDD\|377254	pfam04232, SpoVS, Stage V sporulation protein S (SpoVS). In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly.	6.53583e-36
NC_009437.1\|WP_011915662.1\|43297_44776_+\|IS21-like-element-ISCsa9-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.5457e-26
NC_009437.1\|WP_011915659.1\|40292_41162_+\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.94872e-51
NC_009437.1\|WP_011915655.1\|36587_37943_+\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|237087	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme.	0
NC_009437.1\|WP_049754820.1\|34263_34497_+\|IS3-family-transposase	gnl\|CDD\|372570	pfam13333, rve_2, Integrase core domain.	7.53212e-17
NC_009437.1\|WP_011915663.1\|44772_45564_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.80866e-77
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915661.1\|42372_42546_-\|hypothetical-protein	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.62792e-05
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	2.95335e-81
NC_009437.1\|WP_011915658.1\|39705_40275_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	3.39473e-84
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	3.07819e-44
NC_009437.1\|WP_011915648.1\|26441_29489_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.46831e-105

>NC_009437.1|WP_011915659.1|40292_41162_+|TPM-domain-containing-protein
MKIKASLVLRVLAAVLAVAVLSLLFVSFAAAFAQIPKKPVENVYIFDYADLIDSSDEDEMRALAKEIEDKSKAEIVVVTVETLGSYTIEEYANELFNSWGIGDKELNNGVLILVNKENLLSGKRGRIRIEVGYGLEGAITDGKAGRILDEYAIPAFENKEYSKGIRDTFFAVASEVVKEYGLKIEGLSGYEVNESSDTTSTEVQVGDQGSNQETDIPDFVIFVAVVLIIIFSFIGRRRKRIYWWGHDPWDGDDDHHHFGGFGGFGRGSGSSGGFGGFGGGSSGGGGASR
>NC_009437.1|WP_011915658.1|39705_40275_+|LemA-family-protein
MKKGTKILLTILILIVVAVMYTFSTYNSLVRMAENVDNKWSQVENQLQRRADLIPNLVNTVKGYAKHEKEIFETLAQARSKLLNANTVEDKAKANDELSSAISRLLMIVENYPNLKADRTFVQLMDELAGTENRIAVARKDYNNAVKSYNMKVKVFPNVLIARMFGFEERQYFQASSQAQSVPSVDFSK
>NC_009437.1|WP_011915655.1|36587_37943_+|TrpB-like-pyridoxal-phosphate-dependent-enzyme
MRKERYKVFLSEDEIPHSWYNITADLKTPLDPPLDPSTRQLIDPNKLKVIFPEALIKQEMATEAFVPIPEEVLEFYKQYRPTPLIRAKRLEKILDTPAKIFYKYEGATPSGSHKLNTAIPQAYYNKKEGIKRLATETGAGQWGSALAIACNFFGLDCTVYMVKVSYNQKPYRRILMETFGAKVIPSPSEFTEAGRKILAQDPNSPGSLGIAISEAVEDAATHPDTNYSLGSVLNHVILHQTIIGEEAKLQMEKIDEYPDIVIGCCGGGSNFAGISFPFLRDKLRNGRNVRAIAVEPAACPTLTKGEFAYDFGDVAGLTPLLKMYTVGSQFVPPSIHAGGLRYHGDSPIVSRLYKDGIIEAIAYKQREVFEAAILFARSEGIIPAPESAHAIKAAIDEAIKAREEGVKKTILISLSGHGHFDLAAYDDYLNGRLEDVEISDEDIKKTLSKLP
>NC_009437.1|WP_049754820.1|34263_34497_+|IS3-family-transposase
MIQSMSRVGCCIDNGPMEGFWGILKSEMYYLNRFDDYDSLKKAIKDYIDYYNTKRYQKRLKCMSPMEYRNHLLSISG
>NC_009437.1|WP_011915653.1|31977_32790_+|hypothetical-protein
MEKRKDKDKFSVNTSNKETILDFVERKLSENASIRELMKDEFVRFTSIRDFLYFKFCPGYFGMCPNSKNKKDKMCNPANCWERRFAALFPHGFDNDYIFYYNLVKDTITPSICYSCGSSSVELEWQDEGYLAKIGLINFADIAYVRCNSCKKKYMSHADNFAIEFIVKLFLAKPSKRSPIKPGQTVVLPKDKVGLEIFIKHLNETKDIKTVWQKLDPFSVANQFEELDLSLATSDFLCDYYNIDYSTEDDIPLEDFEDIDIKDLFDDFEE
>NC_009437.1|WP_049754856.1|31445_31883_+|hypothetical-protein
MFTEISPTFEVFIDNLIQALKSINLNIKKEIVDDIIIEIKQVQVHYMGSSKNVTDVLRKLTFLYQRDFLECIVKCNIFLKSRADTTFAVKNLEVKYKPLQRYNDTVRTLAKEVLEYLPLRDMLEKDFEYTKKALEWIEDNGVVSS
>NC_009437.1|WP_011915651.1|30619_31333_+|hypothetical-protein
MLIKDTFRGVGEILNFSSFLNTVIQKNKWIYTKEFLEKNRIPVPTEQQLKNFDIANAFYKEFLYIVYSPDIISMLNSMKIWAANNNFDMFTDLTLDMIPIIWLGEGYYGIVEKNKERIIMPCALYQYFDDLYKNFPVSNFSVLDICEAYKRLFESEENVAMNIVYAKTIEDLKREFSKNFKDFDILFEGPGYYDLYFSPVSKRYIVAPIREILKRMFEMQLVYFHKLLNIHERFKEK
>NC_009437.1|WP_011915650.1|30181_30442_-|stage-V-sporulation-protein-S
MEVLKVAASSMPQKVANALAAIVKEQGEAELQAVGASAVNQAVKAIAIARGKVAPNGIDLYVIPAFADILIDGEKKTAIKFIVKSR
>NC_009437.1|WP_011915649.1|29694_30090_+|hypothetical-protein
MGYITTNLQEIADIVLKNISLPDLIKEIDIDGSEINVKIKPVTILPEIALKFTITSEAEKIVVLFDPAKSVIIYGFLLGKLKDEQIPGITLFKERLEIDLQKLLLQNIKGIKIQNVFVTSSGEIKIDFSCG
>NC_009437.1|WP_011915648.1|26441_29489_+|EAL-domain-containing-protein
MKRTLKVIIISILLFFLTSQVAYCYHKTIKFQVDKQYPPFSYVINGRVYGFSGDLANLIFEPDKYFLSVSSDTWENVYKRLVSGEIDITGPIVILEERKKDVYFTDPIFTRHVGIYTRKDFNKVITVNNLASFKIGVMKSDYTETLLKERLKIKNYLTFQTIEDEFVALLEGKVDAVIISQEIANYFLVKNNYADQVEIKLKDIFILESGFGISKRRPELVGYVNARLKELIKNGIFDQLYYNYFSTYSSYYYEKKNREVVFSILYILFIIIFASSITIFVMRGINKKLQQGKEAYEKYAELLASNANVIVLTLNLKGEIIFFNRFAEEVTGYKKEEVVGKRWVDLFVPEFRREDAEKLFSEIAEKKVLNNYESEIITKNGDTCWIIWNNVVVENSYLNEPLIISTGLDITPIKKNQRLLEESYEELEETNQELVNTLEILNKQTELLKEEEERYKFIVENISDCIWEFDVAEKRIEFYGNLKDYFETDKINPKIDYYAWLELYHPDDIKAVMEKIQRAFELRDEKIEYEARIKDKNGNYKWVSVHIKVFYDNRGKPEKLIGINIDYSAKKEYEDRIKYLAYYDDLTNLPNRKLFENKLSELIKKAAQTGKIGAVILIDIDNFKDINDLYGHEVGDECLRTISQKIAEYLKGLEVQNYFSRVGGDEFAIILNGLEKKDFVIEVCTEIQKIFENEIFLEKIERGLYTTISMGISFYPDDGRDTKEILRNVDMALSLAKENGKNDFQIFMPFLLLKNLNKIEIEKNLRKAIENDEFVLYYQPVVNLENMEIHSVEALIRWFLPHKGMVSPLEFIPVAEESGLIVRIGEMVIEKALKDLKDWERKGINDIHIAINLSARQFKTKYFENTVAKLLEKYSVDPVKVSFEITETGAVENFDVSLKILGFLCQMGIKFLIDDFGTGYSSLIYLRKLPISGVKIDKSFISELMFSKESRAIVEGIILMAHKLGLKVVAEGIENNKQLEILKEIGCDFGQGYLFSKPVPKEEVEKFLLQKKVLI
>NC_009437.1|WP_011915661.1|42372_42546_-|hypothetical-protein
MSLFQNLRKIREELTFEGIQQGLQQGIQQGLQQGIQQGFEQGKIETAENMIMKGYSD
>NC_009437.1|WP_041722411.1|42515_42695_-|hypothetical-protein
MNNNQLPHNINDLEYKYVFSNKSIFLRLLKRLDEIEILKNLDNETKVVRSCHFFRICER
>NC_009437.1|WP_011915662.1|43297_44776_+|IS21-like-element-ISCsa9-family-transposase
MHTTIYTLFKRGYNKSQIARLLDVDRKTVRKVIHDIEQKGEVERKSKGSVLDNYREFIEVKVNKGLSAKKIHQDLKAEFGFEGSYSNVRRYVQKVKQKIANSKVYMVLTTLPAEEAQVDFGYIGKIKVDGKFKKAWVFTMVLSYSRYMYAEIVFEQTVETFIQCHKNAFKYFGGVVEVVKIDNLKAGVLNVDFYEAQIQKDYASFASHYGFLPQPCRVYTPTDKGKVESAIKYVKQNCFSGEEFKDIDEAREYLKNWLDNVANVRVHGTTKKVPKEVFISEEKEKLIALPVEEYYISRSSIHKVATNCHLIYKGNYYSVPYEYAGGEVEVVEIGSFLRVFFEGKEIALHQIVKNNEKGKYVTNKEHYPSSKNITIEDIMSRQREQMAEIGEWALKFFEEFTEQEGFKKYDYRSISGIIALKERYGSKMVDNACKRALKFRGLSYKLVKNICEKGISDLPEYEDESYINEERTELYRDIREYDKLLEIGELQR
>NC_009437.1|WP_011915663.1|44772_45564_+|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWARIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_011915664.1|45920_46319_+|hypothetical-protein
MNKLFLIFNHTLTEDQEKEAKELLKVTQIIPLPQHLQKLWSNIPPDKDLSSDLFFPITSYLLANKGEDKNYCLIQGDFGAMVYLVSWCFKHDFIPIYATTKRVAQEVIKPDGSVELIKVFKHERFRRYILCI
>NC_009437.1|WP_011915665.1|46364_47786_+|TIGR01897-family-CRISPR-associated-protein
MKIIYQIGRLDNPGSAKKEFFITRFKGEIVNFSRESELSAFVLRDFLNSQGNEAKTVVIYPISILLNEKIKDYVEDEDLKKELKNICENPSQYLKSPFDIINRLPLESLRDDALVIHSLGTYLNNVELDGSYDDIVLEILFDMIERYMKEDIDEIYLDISSGHNIYISAMIEASRHFAVLTKLMHWIHEEKRPSIYVVFSDPIMGSSAKTFEIHIQPQSYTAFFSSPISKKEACDHNFSFLRNIYQEPQDDTKGNNKVLQKQQIRQKRKALKEKIEMFTILFSAIKNNVPLYLYYHTYHSIDEIKNELVNLINHAKDQLIKDFEVSPKLNKKAYLDAIFSLCFYMGIVEVLERYNITMFCQQTGFDLEKLGQTFAQIYTIFGIPMNYTMLGNEISNDTEKIQQHGEIDKWTRLRKIVDPVKSISDEPDERNFFAHSGLEGNVTEVRYDGEKVYVRYIQVLPQSTIDCWLKKRV
>NC_009437.1|WP_011915666.1|47865_49179_+|TIGR02221-family-CRISPR-associated-protein
MTKNNITNVLISVIGKGRLKKDQTVGYEQTEYVFNPDTNKKYVASKTAFFGIALYEYFKEVEKIQIDKFILIGTDRSAWSELYQILPHDVQNSEDITAMCLKVYEEEKKGIQDSTLSVWQNTLTKYVPKLKFYKIKPLELGRGIDILLQELDKDGDYNIIFDMTHAFRNIPVVFSYGIMLLKYLRKINSVRIFYGAHDMINYFSDLVSGQSPVIEIPLIDKLVRLIESMATFQNSGYFVPLLEQIGFGDREKTYFKLEMNRQPRREIEEIIKEFENKQEAVKHAFEKEIVEIMYKEFCEMNRQEKLYQRMYKRSKFFYERRQYLKALVLLYEAIIVLFADVYNIKDNMNYDAREKARDKLFLEIKNIKNKKSDLNKLIKEQDEADTVKELEYVRNAAVHGSSPRGNQEYLENVEKFKILLNSAINLFEKMLKRRSES
>NC_009437.1|WP_011915667.1|49549_50497_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915668.1|50668_51598_+|hypothetical-protein
MCLLVYDVIRMAKCNHSSVCVQHSNLFYQIKSTCEKCLPKVHFRRKNNGNLRDYDCKNMIYYYCGRYSLKHSGEVFLLLQQISHRIPDNLRVLSIGCGPCTDLLAFDAYLKTHKQNGKIEYHGLEKSNLWNDIHNFIIQNSEKHNLSKVKITYLDVVEQFREVENIIKNEKPNIISFQYVLSDMAKYYHVDFVKEFADKFVEKAFEILPGSTIIIFNDTNVTQSYAKKNPDEVKGRIILEFLAKKYWSKNYVSVLKYYFPYKNDKSLEFGKAQSKCKVEMKKVPEDLKNYFEMWTEYRSIQLVLIKEYI
>NC_009437.1|WP_011915669.1|51633_52731_+|DUF1848-domain-containing-protein
MIISASRRTDIPAFYGDWFINRIKEGFAMYRNPMRPTQVFAVSLHPKDVDAIVFWTKNPKNFLDKLKYLEEYIYYFQFTITPYGKDLEPGIPSKDEVIQTFIELSNMIGKKRVIWRYDPIIINDKMPLSYHKEKFEEFCEKLSPYTLKCIISYVDFYSKAVDELNKINAKDLTAEQLYNVFTEIGKIGKRYNLSVETCAEEVPVEELGLRKAHCVDGELINELGREKGFKDDTEYKKDSNQRKACGCVQSVDLGIFNTCKHFCTYCYANFSRNSILKNVQKYDANSPLLCSFLDIEKDEIRIRLKEGSRKLDIKDIQDGKVNGIESYYGQISFYDSNKDLSEKFDGWLEKKVLEYLERSNQRHCY

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Crispr_ID: NC_009437_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_2

52952-53121

TypeI-B

Consensus_repeat	Method
GTTTCAGTCCCCAAAGGGGAGGCTACAAACACGTAGAAGA	PILER-CR
GTTTCAGTCCCCAAAGGGGAGGCTACAAAC	CRISPRCasFinder

2 spacers

csx1,csx20,cas8b1,cas7b,cas5

The CRISPR arrays of NC_009437_2

>merge|NC_009437|2|52952-53121|PILER-CR,CRISPRCasFinder
GTTTCAGTCCCCAAAGGGGAGGCTACAAACTTAATGGTAGCCGATGGTTGTGTTCACGGCTGGCAGGTTTCAGTCCCCAAAGGGGAGGCTACAAACATGTATATGAAGTAGGACAAGAATTGGAAAGAGAGTTTCAGTCCCCAAAGGGGAGGCTACAAACACGTTGAAGA

>NC_009437|2|2|52952-53121|PILER-CR
GTTTCAGTCCCCAAAGGGGAGGCTACAAACTTAATGGTAGCCGA	TGGTTGTGTTCACGGCTGGCAGGTTTCAGTCCCCAA
AGGGGAGGCTACAAACATGTATATGAAGTAGGACAAGAATTGGA	AAGAGAGTTTCAGTCCCCAAA
GGGGAGGCTACAAACACGTTGAAGA

>NC_009437|2|1|52952-53111|CRISPRCasFinder
GTTTCAGTCCCCAAAGGGGAGGCTACAAAC	TTAATGGTAGCCGATGGTTGTGTTCACGGCTGGCAG
GTTTCAGTCCCCAAAGGGGAGGCTACAAAC	ATGTATATGAAGTAGGACAAGAATTGGAAAGAGA
GTTTCAGTCCCCAAAGGGGAGGCTACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_148203698.1\|57476_57668_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915664.1\|45920_46319_+\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915668.1\|50668_51598_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_009437.1\|WP_011915662.1\|43297_44776_+\|IS21-like-element-ISCsa9-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_009437.1\|WP_041722413.1\|53725_53905_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915663.1\|44772_45564_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915670.1\|54449_55841_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915661.1\|42372_42546_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235562
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_041722411.1\|42515_42695_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915673.1\|57932_59162_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NC_009437.1\|WP_187147309.1\|53582_53756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.21822e-25
NC_009437.1\|WP_011915662.1\|43297_44776_+\|IS21-like-element-ISCsa9-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.5457e-26
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	6.70966e-145
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.57552e-06
NC_009437.1\|WP_011915670.1\|54449_55841_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.70428e-31
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915661.1\|42372_42546_-\|hypothetical-protein	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.62792e-05
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	2.95335e-81
NC_009437.1\|WP_011915663.1\|44772_45564_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.80866e-77
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	2.53479e-162
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.53305e-73
NC_009437.1\|WP_011915673.1\|57932_59162_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	3.07819e-44
NC_009437.1\|WP_187147309.1\|53582_53756_-\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	2.09907e-05

>NC_009437.1|WP_011915669.1|51633_52731_+|DUF1848-domain-containing-protein
MIISASRRTDIPAFYGDWFINRIKEGFAMYRNPMRPTQVFAVSLHPKDVDAIVFWTKNPKNFLDKLKYLEEYIYYFQFTITPYGKDLEPGIPSKDEVIQTFIELSNMIGKKRVIWRYDPIIINDKMPLSYHKEKFEEFCEKLSPYTLKCIISYVDFYSKAVDELNKINAKDLTAEQLYNVFTEIGKIGKRYNLSVETCAEEVPVEELGLRKAHCVDGELINELGREKGFKDDTEYKKDSNQRKACGCVQSVDLGIFNTCKHFCTYCYANFSRNSILKNVQKYDANSPLLCSFLDIEKDEIRIRLKEGSRKLDIKDIQDGKVNGIESYYGQISFYDSNKDLSEKFDGWLEKKVLEYLERSNQRHCY
>NC_009437.1|WP_011915668.1|50668_51598_+|hypothetical-protein
MCLLVYDVIRMAKCNHSSVCVQHSNLFYQIKSTCEKCLPKVHFRRKNNGNLRDYDCKNMIYYYCGRYSLKHSGEVFLLLQQISHRIPDNLRVLSIGCGPCTDLLAFDAYLKTHKQNGKIEYHGLEKSNLWNDIHNFIIQNSEKHNLSKVKITYLDVVEQFREVENIIKNEKPNIISFQYVLSDMAKYYHVDFVKEFADKFVEKAFEILPGSTIIIFNDTNVTQSYAKKNPDEVKGRIILEFLAKKYWSKNYVSVLKYYFPYKNDKSLEFGKAQSKCKVEMKKVPEDLKNYFEMWTEYRSIQLVLIKEYI
>NC_009437.1|WP_011915667.1|49549_50497_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915666.1|47865_49179_+|TIGR02221-family-CRISPR-associated-protein
MTKNNITNVLISVIGKGRLKKDQTVGYEQTEYVFNPDTNKKYVASKTAFFGIALYEYFKEVEKIQIDKFILIGTDRSAWSELYQILPHDVQNSEDITAMCLKVYEEEKKGIQDSTLSVWQNTLTKYVPKLKFYKIKPLELGRGIDILLQELDKDGDYNIIFDMTHAFRNIPVVFSYGIMLLKYLRKINSVRIFYGAHDMINYFSDLVSGQSPVIEIPLIDKLVRLIESMATFQNSGYFVPLLEQIGFGDREKTYFKLEMNRQPRREIEEIIKEFENKQEAVKHAFEKEIVEIMYKEFCEMNRQEKLYQRMYKRSKFFYERRQYLKALVLLYEAIIVLFADVYNIKDNMNYDAREKARDKLFLEIKNIKNKKSDLNKLIKEQDEADTVKELEYVRNAAVHGSSPRGNQEYLENVEKFKILLNSAINLFEKMLKRRSES
>NC_009437.1|WP_011915665.1|46364_47786_+|TIGR01897-family-CRISPR-associated-protein
MKIIYQIGRLDNPGSAKKEFFITRFKGEIVNFSRESELSAFVLRDFLNSQGNEAKTVVIYPISILLNEKIKDYVEDEDLKKELKNICENPSQYLKSPFDIINRLPLESLRDDALVIHSLGTYLNNVELDGSYDDIVLEILFDMIERYMKEDIDEIYLDISSGHNIYISAMIEASRHFAVLTKLMHWIHEEKRPSIYVVFSDPIMGSSAKTFEIHIQPQSYTAFFSSPISKKEACDHNFSFLRNIYQEPQDDTKGNNKVLQKQQIRQKRKALKEKIEMFTILFSAIKNNVPLYLYYHTYHSIDEIKNELVNLINHAKDQLIKDFEVSPKLNKKAYLDAIFSLCFYMGIVEVLERYNITMFCQQTGFDLEKLGQTFAQIYTIFGIPMNYTMLGNEISNDTEKIQQHGEIDKWTRLRKIVDPVKSISDEPDERNFFAHSGLEGNVTEVRYDGEKVYVRYIQVLPQSTIDCWLKKRV
>NC_009437.1|WP_011915664.1|45920_46319_+|hypothetical-protein
MNKLFLIFNHTLTEDQEKEAKELLKVTQIIPLPQHLQKLWSNIPPDKDLSSDLFFPITSYLLANKGEDKNYCLIQGDFGAMVYLVSWCFKHDFIPIYATTKRVAQEVIKPDGSVELIKVFKHERFRRYILCI
>NC_009437.1|WP_011915663.1|44772_45564_+|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWARIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_011915662.1|43297_44776_+|IS21-like-element-ISCsa9-family-transposase
MHTTIYTLFKRGYNKSQIARLLDVDRKTVRKVIHDIEQKGEVERKSKGSVLDNYREFIEVKVNKGLSAKKIHQDLKAEFGFEGSYSNVRRYVQKVKQKIANSKVYMVLTTLPAEEAQVDFGYIGKIKVDGKFKKAWVFTMVLSYSRYMYAEIVFEQTVETFIQCHKNAFKYFGGVVEVVKIDNLKAGVLNVDFYEAQIQKDYASFASHYGFLPQPCRVYTPTDKGKVESAIKYVKQNCFSGEEFKDIDEAREYLKNWLDNVANVRVHGTTKKVPKEVFISEEKEKLIALPVEEYYISRSSIHKVATNCHLIYKGNYYSVPYEYAGGEVEVVEIGSFLRVFFEGKEIALHQIVKNNEKGKYVTNKEHYPSSKNITIEDIMSRQREQMAEIGEWALKFFEEFTEQEGFKKYDYRSISGIIALKERYGSKMVDNACKRALKFRGLSYKLVKNICEKGISDLPEYEDESYINEERTELYRDIREYDKLLEIGELQR
>NC_009437.1|WP_041722411.1|42515_42695_-|hypothetical-protein
MNNNQLPHNINDLEYKYVFSNKSIFLRLLKRLDEIEILKNLDNETKVVRSCHFFRICER
>NC_009437.1|WP_011915661.1|42372_42546_-|hypothetical-protein
MSLFQNLRKIREELTFEGIQQGLQQGIQQGLQQGIQQGFEQGKIETAENMIMKGYSD
>NC_009437.1|WP_187147309.1|53582_53756_-|hypothetical-protein
MPLFQNLRKIKEELIFEGIQQGLQQGIQQGLQQGIQQGFEQGKIETAEKMIMKGYSD
>NC_009437.1|WP_041722413.1|53725_53905_-|hypothetical-protein
MNNNQLLHNINDLEYKYVFSNKSIFLRLLKKLDEIEIFKNLDNETKVVRSCHFFRICER
>NC_009437.1|WP_011915670.1|54449_55841_+|ATP-binding-protein
MKRFINRRQELDFLEKQYREQNSSLVIIYGRRRIGKTALIKKFIEDKPAIYFLASEEAESQNIEYYKKAVGNFLKNPLIERLSGVGWDDIFDVIINAKINKKTVIVFDEFQNLCKTNPAFASIVQRIWDEKLKNHNFMLILSGSLVGMMQEHALSYSSPLYGRRTGQIKLKQFSFKEAKEFFPEASDDQFIWIYSIVGGVPKYLEMFKFEGDIYKAIEENILSRQSFLYEEPLFLLEKEVHEVGSYFSIIKSIALGNHKLSQIAQSLSTAQTKLTKYLNTLIDLDIVRREVPVTEEYPEKSKRGLYFINDNFIDFWFKFVYPYREQLELDNTEYVIENIKSKIVTNHISFIYEEVCRQILMDLIKTKEIDIQLDRIGKWWDSKSEIDIVGISKNTGHVVFGECKYSQRVVDIDVFFNLKKKAENIKVFPEQKELYILFSRTGFSERLLEFAKETENLILIKFP
>NC_009437.1|WP_148203698.1|57476_57668_-|hypothetical-protein
MFFKAKVIQIIVFEYYSKDDLYYFHFDQKSYLSTSGGKILRFNLYAISELQHMDLTKLLAAAG
>NC_009437.1|WP_011915673.1|57932_59162_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915676.1|62397_63519_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYHFELAILVT
>NC_009437.1|WP_039767848.1|63758_65825_+|TIGR02556-family-CRISPR-associated-protein
MIEEIVEIGDVLIGDASGNDAHLSVLTEDIEVPSGDEKRYVAKIDFSTNEKKINIDCAEEIDDETAKKYVYVGSAEGANSSQWFASTTSFAYFLTETIPNLVECEIPVVSDICKKILDMYFVKVKEYLSKSSELIDEEKRYLQQRIEKKYVYFLDTDNIVVNDNKRLTEKPLSQIYKELINNAKSTDKIFKQLRDVFTKECTNGLKKLTELKPQQIGLYVLCVDGKPLTSYPEYIDAVIAYKRQVKKGTEKTKKKQKEGNICYICLDTDNLSFEGFKKTKFKYFTTNQNIFASYLDQKNYAKNITVCEKCLLKLVAGDIFLRNKLKTQLGSFDVYVLPTFVYTSAKLTKNYLEELSQNITNSLNTAWNYNSLEKLRDDIYNFLSYFDQNHYFLLNLIFYREAQASTKIIRFVPDINPSIFDKIYNAASKVFSQYTDLIGNDPSFKISLESIYYSVPIRLKNISESKEAQRLLNIYDAIFSGKRIARDVLIENFIKAVGVVVYGKEGYNLSKFIGNDIASMVIRMVFVIRFLEILDCLEVERGMDVAQLNLSEDLKNYIQQMNYDEPKTALFLLGVLIGEIGAKQYLATKDRQDDSAGHKPILNKINYNGIDKPKLIRLCNDVHNKLRQEKILPYTEMIFAEMKRLLDKHIDSWKLDKYETLFYILSGYAYKTQKVILNASSNFQDTSN
>NC_009437.1|WP_011915678.1|65846_66731_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MEKKIIDKNSEILFTYDAKLCNPNGDPDEENRPRMDWEKEINLVSDVRVKRYIRDYADDQGIPIYVRKIEGKSVKPEEVIKSVGEDIDELETFIDIRLFGATIPIKKETRTYIGPVQFNWGYSLNKVELLEASITSHFASDEKKQQGAIGKDYRVKYSFIAFSGIVSARRAKETRLTEDDLKFLDRAMKEAIPLQATRSKIGQYPRLYMRVEYLDDKTLLGDLRDYVKLIEVVEKPRKIEDVQLDITDLAEFLHKNKNVISKIYYFKHPELCLVCGGNVVDFKDAFGTFELEEV
>NC_009437.1|WP_011915679.1|66751_67504_+|CRISPR-associated-protein-Cas5
MKFLVFDLKGKFAHFRKFYTNSSSLSYLVPPRTVIEGMVAAILGFERDSYYGVLSAENLLVAVQKIERTYKIVQTVNYIKATTVNELKNPNTHTQVPLEILAGYNGFVGFRVFVMPKDEEIYSLLRARLESGKSEFPIYFGSAPFAAKTEFLGEFEACRWEDSRAGILTVLDAGLIKSLSLELESTSSLALMKDRMPCDFDKDRFATKVKTYIHDENLNPIWVDLDSSAQDKVYYIKEFSGDRKECICVM
>NC_009437.1|WP_011915681.1|68071_68863_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN

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Crispr_ID: NC_009437_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_3

60110-62054

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CRISPRCasFinder
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CRT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	PILER-CR

29 spacers

csx1,cas8b1,cas7b,cas5,cas4,cas1,cas2

The CRISPR arrays of NC_009437_3

>merge|NC_009437|3|60110-62054|CRISPRCasFinder,CRT,PILER-CR
TTTTTAATCTTCAAAGGGTAGGCTACAAACCAATGGTTTCCACAGAATTCAAGCACTTGTTGATATCAAGTTTCAATTCCCAAAGGGGAGGCTACAAACTATCAAAGCAAATGCAAATATGGGTGATGAGCAAATTTTCAATCCCCAAAGGGAAGGCTACAAACTTGCTGTGTCAAACCACGTTCTTTTCTCAATTCTTTGTTTCAATCCCCAAAGGGAAGGCTACAAACAAGGAAGGCTAAAGGACTTACACAAGAAGAGATGGCGTTTCAATCCCCAAAGGGAAGGCTACAAACCTGCAAAAGCTTATTCGCTATCGTCTGTGCCATAGCGTTTCAATCCCCAAAGGGAAGGCTACAAACTGTTGCGCTTCGCCTGTAGAGCTCCAGCTTCGCCTGGTTTCAATCCCCAAAGGGAAGGCTACAAACCCGTTGGGGTTGAAAAAATAAAAAAAAGGGAGGGTTGTTTCAATCCCCAAAGGGAAGGCTACAAACCAGAAATAATAAGTACACTATAGCGGTTGATATCGGTTTCAATCCCCAAAGGGAAGGCTACAAACAGAGGAAGATGAAAGCAATTTTGGTTGATGAAAACAGTTTCAATCCCCAAAGGGAAGGCTACAAACCGTTATGATAGCGCTCTCTATAAAAGACAGTTGAAGAGTTTCAATCCCCAAAGGGAAGGCTACAAACCGGTAAAAAGGGTGACAAAGAGATATTGCACATGCGGTTTCAATCCCCAAAGGGAAGGCTACAAACAACAGTTCATACAACCACCCTCCATTTTTATTTTTTGTTTCAATCCCCAAAGGGAAGGCTACAAACTATGGAGTAGGGGCAAGCCCTACTCCTCTACCTCAAGTTTCAATCCCCAAAGGGAAGGCTACAAACCAGATATAATTTTTAAAATTTCTTCTCGCATTTCATGTTTCAATCCCCAAAGGGAAGGCTACAAACTAACTCTTGTGTAATTTGTATCGCACCCCATCTGTGTTTCAATCCCCAAAGGGAAGGCTACAAACTGTAACTGCCTCACTTGTCTGTATGCCGTTTTTAGTGTTTCAATCCCCAAAGGGAAGGCTACAAACAAGGAATACTTGAGCAGCATAGGGCTTGACCCAAGAGTTTCAATCCCCAAAGGGAAGGCTACAAACGCATTGTAGGAAGTGATGCAGGTACTAGCTTGAAGTGTTTCAATCCCCAAAGGGAAGGCTACAAACTTTGACAGTGCTATCACAGCGTATCCTTCTGCTTGAGTTTCAATCCCCAAAGGGAAGGCTACAAACTCAAAATCAACAAGAGCGATATGACGATTACTTGCATGTTTCAATCCCCAAAGGGAAGGCTACAAACTTTCTTAGAAAGCTTTTTTTCCTTTCTGAAATTTTCGTTTCAATCCCCAAAGGGAAGGCTACAAACTTTGCCTTACCTGTTACTTCAGCTTTTTCTAAAAACTGTTTCAATCCCCAAAGGGAAGGCTACAAACTTATAAGAATTTCACAATCTAACAATCGCTTCAAGTGTTTCAATCCCCAAAGGGAAGGCTACAAACCAGTCATCTTAAATCATCCTCCTCACTTTGATTTTCGTTTCAATCCCCAAAGGGAAGGCTACAAACTTTTTTAATCAACTCATCCAAATGATTGTATCCAAGTTTCAATCCCCAAAGGGAAGGCTACAAACCAGTCATCTTAAATCATCCTCCTCACTTTGATTTTCGTTTCAATCCCCAAAGGGAAGGCTACAAACTTTTTTAATCAACTCATCCAAATGATTGTATCCAAGTTTCAATCCCCAAAGGGAAGGCTACAAACTGACGTTGAATTTGATATTTTCTTTAATAAGAAAGAGTTTCAATCCCCAAAGGGAAGGCTACAAACATAGCACTGCCCAGAGTCCCTGACTCATTGCAAGTTGTTTCAATCCCCAAAGGGAAGGCTACAAAC

>NC_009437|3|2|60110-62054|CRISPRCasFinder
TTTTTAATCTTCAAAGGGTAGGCTACAAAC	CAATGGTTTCCACAGAATTCAAGCACTTGTTGATATCAA
GTTTCAATTCCCAAAGGGGAGGCTACAAAC	TATCAAAGCAAATGCAAATATGGGTGATGAGCAAA
TTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTGCTGTGTCAAACCACGTTCTTTTCTCAATTCTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAAGGCTAAAGGACTTACACAAGAAGAGATGGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CTGCAAAAGCTTATTCGCTATCGTCTGTGCCATAGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTTGCGCTTCGCCTGTAGAGCTCCAGCTTCGCCTG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CCGTTGGGGTTGAAAAAATAAAAAAAAGGGAGGGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGAAATAATAAGTACACTATAGCGGTTGATATCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AGAGGAAGATGAAAGCAATTTTGGTTGATGAAAACA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGTTATGATAGCGCTCTCTATAAAAGACAGTTGAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGGTAAAAAGGGTGACAAAGAGATATTGCACATGCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AACAGTTCATACAACCACCCTCCATTTTTATTTTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TATGGAGTAGGGGCAAGCCCTACTCCTCTACCTCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGATATAATTTTTAAAATTTCTTCTCGCATTTCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TAACTCTTGTGTAATTTGTATCGCACCCCATCTGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTAACTGCCTCACTTGTCTGTATGCCGTTTTTAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAATACTTGAGCAGCATAGGGCTTGACCCAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	GCATTGTAGGAAGTGATGCAGGTACTAGCTTGAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGACAGTGCTATCACAGCGTATCCTTCTGCTTGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TCAAAATCAACAAGAGCGATATGACGATTACTTGCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTCTTAGAAAGCTTTTTTTCCTTTCTGAAATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGCCTTACCTGTTACTTCAGCTTTTTCTAAAAACT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTATAAGAATTTCACAATCTAACAATCGCTTCAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGACGTTGAATTTGATATTTTCTTTAATAAGAAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	ATAGCACTGCCCAGAGTCCCTGACTCATTGCAAGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC

>NC_009437|3|1|60110-62054|CRT
TTTTTAATCTTCAAAGGGTAGGCTACAAAC	CAATGGTTTCCACAGAATTCAAGCACTTGTTGATATCAA
GTTTCAATTCCCAAAGGGGAGGCTACAAAC	TATCAAAGCAAATGCAAATATGGGTGATGAGCAAA
TTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTGCTGTGTCAAACCACGTTCTTTTCTCAATTCTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAAGGCTAAAGGACTTACACAAGAAGAGATGGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CTGCAAAAGCTTATTCGCTATCGTCTGTGCCATAGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTTGCGCTTCGCCTGTAGAGCTCCAGCTTCGCCTG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CCGTTGGGGTTGAAAAAATAAAAAAAAGGGAGGGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGAAATAATAAGTACACTATAGCGGTTGATATCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AGAGGAAGATGAAAGCAATTTTGGTTGATGAAAACA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGTTATGATAGCGCTCTCTATAAAAGACAGTTGAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGGTAAAAAGGGTGACAAAGAGATATTGCACATGCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AACAGTTCATACAACCACCCTCCATTTTTATTTTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TATGGAGTAGGGGCAAGCCCTACTCCTCTACCTCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGATATAATTTTTAAAATTTCTTCTCGCATTTCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TAACTCTTGTGTAATTTGTATCGCACCCCATCTGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTAACTGCCTCACTTGTCTGTATGCCGTTTTTAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAATACTTGAGCAGCATAGGGCTTGACCCAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	GCATTGTAGGAAGTGATGCAGGTACTAGCTTGAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGACAGTGCTATCACAGCGTATCCTTCTGCTTGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TCAAAATCAACAAGAGCGATATGACGATTACTTGCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTCTTAGAAAGCTTTTTTTCCTTTCTGAAATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGCCTTACCTGTTACTTCAGCTTTTTCTAAAAACT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTATAAGAATTTCACAATCTAACAATCGCTTCAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGACGTTGAATTTGATATTTTCTTTAATAAGAAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	ATAGCACTGCCCAGAGTCCCTGACTCATTGCAAGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC

>NC_009437|3|3|60179-62054|PILER-CR
GTTTCAATTCCCAAAGGGGAGGCTACAAAC	TATCAAAGCAAATGCAAATATGGGTGATGAGCAAA
TTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTGCTGTGTCAAACCACGTTCTTTTCTCAATTCTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAAGGCTAAAGGACTTACACAAGAAGAGATGGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CTGCAAAAGCTTATTCGCTATCGTCTGTGCCATAGC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTTGCGCTTCGCCTGTAGAGCTCCAGCTTCGCCTG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CCGTTGGGGTTGAAAAAATAAAAAAAAGGGAGGGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGAAATAATAAGTACACTATAGCGGTTGATATCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AGAGGAAGATGAAAGCAATTTTGGTTGATGAAAACA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGTTATGATAGCGCTCTCTATAAAAGACAGTTGAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CGGTAAAAAGGGTGACAAAGAGATATTGCACATGCG
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AACAGTTCATACAACCACCCTCCATTTTTATTTTTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TATGGAGTAGGGGCAAGCCCTACTCCTCTACCTCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGATATAATTTTTAAAATTTCTTCTCGCATTTCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TAACTCTTGTGTAATTTGTATCGCACCCCATCTGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGTAACTGCCTCACTTGTCTGTATGCCGTTTTTAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	AAGGAATACTTGAGCAGCATAGGGCTTGACCCAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	GCATTGTAGGAAGTGATGCAGGTACTAGCTTGAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGACAGTGCTATCACAGCGTATCCTTCTGCTTGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TCAAAATCAACAAGAGCGATATGACGATTACTTGCAT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTCTTAGAAAGCTTTTTTTCCTTTCTGAAATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTGCCTTACCTGTTACTTCAGCTTTTTCTAAAAACT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTATAAGAATTTCACAATCTAACAATCGCTTCAAGT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	CAGTCATCTTAAATCATCCTCCTCACTTTGATTTTC
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TTTTTTAATCAACTCATCCAAATGATTGTATCCAA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	TGACGTTGAATTTGATATTTTCTTTAATAAGAAAGA
GTTTCAATCCCCAAAGGGAAGGCTACAAAC	ATAGCACTGCCCAGAGTCCCTGACTCATTGCAAGTT
GTTTCAATCCCCAAAGGGAAGGCTACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915687.1\|76833_77115_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915685.1\|75393_75657_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011915668.1\|50668_51598_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915683.1\|73847_74345_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_009437.1\|WP_041722413.1\|53725_53905_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_187147309.1\|53582_53756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237372
NC_009437.1\|WP_148203698.1\|57476_57668_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915673.1\|69029_70259_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915673.1\|57932_59162_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NC_009437.1\|WP_011915670.1\|54449_55841_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_009437.1\|WP_011915684.1\|74395_75388_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915685.1\|75393_75657_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.61681e-32
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.21822e-25
NC_009437.1\|WP_011915683.1\|73847_74345_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.85265e-72
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915669.1\|51633_52731_+\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	6.70966e-145
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.57552e-06
NC_009437.1\|WP_187147309.1\|53582_53756_-\|hypothetical-protein	gnl\|CDD\|237372	PRK13386, fliH, flagellar assembly protein H; Provisional.	2.09907e-05
NC_009437.1\|WP_011915667.1\|49549_50497_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915673.1\|69029_70259_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915673.1\|57932_59162_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	2.53479e-162
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.53305e-73
NC_009437.1\|WP_011915665.1\|46364_47786_+\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	2.95335e-81
NC_009437.1\|WP_011915666.1\|47865_49179_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	3.07819e-44
NC_009437.1\|WP_011915670.1\|54449_55841_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.70428e-31
NC_009437.1\|WP_011915684.1\|74395_75388_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.11716e-159

>NC_009437.1|WP_011915673.1|57932_59162_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_148203698.1|57476_57668_-|hypothetical-protein
MFFKAKVIQIIVFEYYSKDDLYYFHFDQKSYLSTSGGKILRFNLYAISELQHMDLTKLLAAAG
>NC_009437.1|WP_011915670.1|54449_55841_+|ATP-binding-protein
MKRFINRRQELDFLEKQYREQNSSLVIIYGRRRIGKTALIKKFIEDKPAIYFLASEEAESQNIEYYKKAVGNFLKNPLIERLSGVGWDDIFDVIINAKINKKTVIVFDEFQNLCKTNPAFASIVQRIWDEKLKNHNFMLILSGSLVGMMQEHALSYSSPLYGRRTGQIKLKQFSFKEAKEFFPEASDDQFIWIYSIVGGVPKYLEMFKFEGDIYKAIEENILSRQSFLYEEPLFLLEKEVHEVGSYFSIIKSIALGNHKLSQIAQSLSTAQTKLTKYLNTLIDLDIVRREVPVTEEYPEKSKRGLYFINDNFIDFWFKFVYPYREQLELDNTEYVIENIKSKIVTNHISFIYEEVCRQILMDLIKTKEIDIQLDRIGKWWDSKSEIDIVGISKNTGHVVFGECKYSQRVVDIDVFFNLKKKAENIKVFPEQKELYILFSRTGFSERLLEFAKETENLILIKFP
>NC_009437.1|WP_041722413.1|53725_53905_-|hypothetical-protein
MNNNQLLHNINDLEYKYVFSNKSIFLRLLKKLDEIEIFKNLDNETKVVRSCHFFRICER
>NC_009437.1|WP_187147309.1|53582_53756_-|hypothetical-protein
MPLFQNLRKIKEELIFEGIQQGLQQGIQQGLQQGIQQGFEQGKIETAEKMIMKGYSD
>NC_009437.1|WP_011915669.1|51633_52731_+|DUF1848-domain-containing-protein
MIISASRRTDIPAFYGDWFINRIKEGFAMYRNPMRPTQVFAVSLHPKDVDAIVFWTKNPKNFLDKLKYLEEYIYYFQFTITPYGKDLEPGIPSKDEVIQTFIELSNMIGKKRVIWRYDPIIINDKMPLSYHKEKFEEFCEKLSPYTLKCIISYVDFYSKAVDELNKINAKDLTAEQLYNVFTEIGKIGKRYNLSVETCAEEVPVEELGLRKAHCVDGELINELGREKGFKDDTEYKKDSNQRKACGCVQSVDLGIFNTCKHFCTYCYANFSRNSILKNVQKYDANSPLLCSFLDIEKDEIRIRLKEGSRKLDIKDIQDGKVNGIESYYGQISFYDSNKDLSEKFDGWLEKKVLEYLERSNQRHCY
>NC_009437.1|WP_011915668.1|50668_51598_+|hypothetical-protein
MCLLVYDVIRMAKCNHSSVCVQHSNLFYQIKSTCEKCLPKVHFRRKNNGNLRDYDCKNMIYYYCGRYSLKHSGEVFLLLQQISHRIPDNLRVLSIGCGPCTDLLAFDAYLKTHKQNGKIEYHGLEKSNLWNDIHNFIIQNSEKHNLSKVKITYLDVVEQFREVENIIKNEKPNIISFQYVLSDMAKYYHVDFVKEFADKFVEKAFEILPGSTIIIFNDTNVTQSYAKKNPDEVKGRIILEFLAKKYWSKNYVSVLKYYFPYKNDKSLEFGKAQSKCKVEMKKVPEDLKNYFEMWTEYRSIQLVLIKEYI
>NC_009437.1|WP_011915667.1|49549_50497_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915666.1|47865_49179_+|TIGR02221-family-CRISPR-associated-protein
MTKNNITNVLISVIGKGRLKKDQTVGYEQTEYVFNPDTNKKYVASKTAFFGIALYEYFKEVEKIQIDKFILIGTDRSAWSELYQILPHDVQNSEDITAMCLKVYEEEKKGIQDSTLSVWQNTLTKYVPKLKFYKIKPLELGRGIDILLQELDKDGDYNIIFDMTHAFRNIPVVFSYGIMLLKYLRKINSVRIFYGAHDMINYFSDLVSGQSPVIEIPLIDKLVRLIESMATFQNSGYFVPLLEQIGFGDREKTYFKLEMNRQPRREIEEIIKEFENKQEAVKHAFEKEIVEIMYKEFCEMNRQEKLYQRMYKRSKFFYERRQYLKALVLLYEAIIVLFADVYNIKDNMNYDAREKARDKLFLEIKNIKNKKSDLNKLIKEQDEADTVKELEYVRNAAVHGSSPRGNQEYLENVEKFKILLNSAINLFEKMLKRRSES
>NC_009437.1|WP_011915665.1|46364_47786_+|TIGR01897-family-CRISPR-associated-protein
MKIIYQIGRLDNPGSAKKEFFITRFKGEIVNFSRESELSAFVLRDFLNSQGNEAKTVVIYPISILLNEKIKDYVEDEDLKKELKNICENPSQYLKSPFDIINRLPLESLRDDALVIHSLGTYLNNVELDGSYDDIVLEILFDMIERYMKEDIDEIYLDISSGHNIYISAMIEASRHFAVLTKLMHWIHEEKRPSIYVVFSDPIMGSSAKTFEIHIQPQSYTAFFSSPISKKEACDHNFSFLRNIYQEPQDDTKGNNKVLQKQQIRQKRKALKEKIEMFTILFSAIKNNVPLYLYYHTYHSIDEIKNELVNLINHAKDQLIKDFEVSPKLNKKAYLDAIFSLCFYMGIVEVLERYNITMFCQQTGFDLEKLGQTFAQIYTIFGIPMNYTMLGNEISNDTEKIQQHGEIDKWTRLRKIVDPVKSISDEPDERNFFAHSGLEGNVTEVRYDGEKVYVRYIQVLPQSTIDCWLKKRV
>NC_009437.1|WP_011915676.1|62397_63519_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYHFELAILVT
>NC_009437.1|WP_039767848.1|63758_65825_+|TIGR02556-family-CRISPR-associated-protein
MIEEIVEIGDVLIGDASGNDAHLSVLTEDIEVPSGDEKRYVAKIDFSTNEKKINIDCAEEIDDETAKKYVYVGSAEGANSSQWFASTTSFAYFLTETIPNLVECEIPVVSDICKKILDMYFVKVKEYLSKSSELIDEEKRYLQQRIEKKYVYFLDTDNIVVNDNKRLTEKPLSQIYKELINNAKSTDKIFKQLRDVFTKECTNGLKKLTELKPQQIGLYVLCVDGKPLTSYPEYIDAVIAYKRQVKKGTEKTKKKQKEGNICYICLDTDNLSFEGFKKTKFKYFTTNQNIFASYLDQKNYAKNITVCEKCLLKLVAGDIFLRNKLKTQLGSFDVYVLPTFVYTSAKLTKNYLEELSQNITNSLNTAWNYNSLEKLRDDIYNFLSYFDQNHYFLLNLIFYREAQASTKIIRFVPDINPSIFDKIYNAASKVFSQYTDLIGNDPSFKISLESIYYSVPIRLKNISESKEAQRLLNIYDAIFSGKRIARDVLIENFIKAVGVVVYGKEGYNLSKFIGNDIASMVIRMVFVIRFLEILDCLEVERGMDVAQLNLSEDLKNYIQQMNYDEPKTALFLLGVLIGEIGAKQYLATKDRQDDSAGHKPILNKINYNGIDKPKLIRLCNDVHNKLRQEKILPYTEMIFAEMKRLLDKHIDSWKLDKYETLFYILSGYAYKTQKVILNASSNFQDTSN
>NC_009437.1|WP_011915678.1|65846_66731_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MEKKIIDKNSEILFTYDAKLCNPNGDPDEENRPRMDWEKEINLVSDVRVKRYIRDYADDQGIPIYVRKIEGKSVKPEEVIKSVGEDIDELETFIDIRLFGATIPIKKETRTYIGPVQFNWGYSLNKVELLEASITSHFASDEKKQQGAIGKDYRVKYSFIAFSGIVSARRAKETRLTEDDLKFLDRAMKEAIPLQATRSKIGQYPRLYMRVEYLDDKTLLGDLRDYVKLIEVVEKPRKIEDVQLDITDLAEFLHKNKNVISKIYYFKHPELCLVCGGNVVDFKDAFGTFELEEV
>NC_009437.1|WP_011915679.1|66751_67504_+|CRISPR-associated-protein-Cas5
MKFLVFDLKGKFAHFRKFYTNSSSLSYLVPPRTVIEGMVAAILGFERDSYYGVLSAENLLVAVQKIERTYKIVQTVNYIKATTVNELKNPNTHTQVPLEILAGYNGFVGFRVFVMPKDEEIYSLLRARLESGKSEFPIYFGSAPFAAKTEFLGEFEACRWEDSRAGILTVLDAGLIKSLSLELESTSSLALMKDRMPCDFDKDRFATKVKTYIHDENLNPIWVDLDSSAQDKVYYIKEFSGDRKECICVM
>NC_009437.1|WP_011915681.1|68071_68863_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_011915673.1|69029_70259_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915683.1|73847_74345_+|CRISPR-associated-protein-Cas4
MDIYMTGVYIWYYNICKRQVWLMAHSILPDENDDNIVLGRFLHEYYYRKDQKEIKFGNAVFDILYQDKDEIVIGETKKSSRFKEASRYQLLFYIKLLKEAGISAKGVLFYPEERKKEEVVLTAEEEEKLEKMIADIETIIEKESPPPAATCRYCPKCAYREYCFA
>NC_009437.1|WP_011915684.1|74395_75388_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKDLYVFNSGFLRRKDNTIMFETDEGKKYFPVEEIESVFIFGEVDINKRFLEFMTEKNICVHFFNRYEYYVGTYYPREHYNSGIVILKQVEFYNDYNKRITIARSIVEGAVLNMLVVLRYYNSRGNMLKDEIETIERMRHNISACSDVNTLMALEGNIREIYYKCFNKILDDENFTFVRRSKNPPLDRINALISFGNSLLYATTLGEIYQTQLDPRIGYLHSTNQRKFSLNLDISEIFKPIIVDRVIFSLVNKKVLSEKHFEKELNGIILNDQGKKLFISEYNQKLYSTIMHPKLNTQVSYKRLIRMEAYKLQKLFLENIEYKPFVARW
>NC_009437.1|WP_011915685.1|75393_75657_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDVNEKRVAKALKKCRKYLTWVQNSVFEGNISEATLRRLILELEKVLDLSEDSVIIYKFQNTWYSERQIIGIEKNPVDFIT
>NC_009437.1|WP_011915687.1|76833_77115_-|hypothetical-protein
MSDIKTIQEDIKHEVAIDIIAGLLGSLTNIKLKTVHSDLDKEIKEQKLQKIEEIRKTLCKERDYVYRGDKDAIERALTTYALLYRLIDKEEVI

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Crispr_ID: NC_009437_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_4

79095-79185

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCAAAGGGGAGGCTA	CRISPRCasFinder

1 spacers

cas2,cas1,cas4,cas5,cas7b,cas8b1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

The CRISPR arrays of NC_009437_4

>merge|NC_009437|4|79095-79185|CRISPRCasFinder
GTTTCAATCCCCAAAGGGGAGGCTATAAACAAGCAGGACAAGCTTAAAATTAAATGGAGCAGAACAGTTTCAATCTCCAAAGGGGAGGCTA

>NC_009437|4|3|79095-79185|CRISPRCasFinder
GTTTCAATCCCCAAAGGGGAGGCTA	TAAACAAGCAGGACAAGCTTAAAATTAAATGGAGCAGAACA
GTTTCAATCTCCAAAGGGGAGGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915687.1\|76833_77115_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_009437.1\|WP_011915683.1\|73847_74345_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_009437.1\|WP_011915685.1\|75393_75657_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_011915689.1\|79661_80039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235562
NC_009437.1\|WP_049754857.1\|82100_82340_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915673.1\|69029_70259_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_009437.1\|WP_011915697.1\|88804_89428_+\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915684.1\|74395_75388_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_009437.1\|WP_011915690.1\|80232_81618_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367293
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	1.9e-32	107.1	0.0
NC_009437.1\|WP_011915683.1\|73847_74345_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7.8e-53	173.7	1.6
NC_009437.1\|WP_011915685.1\|75393_75657_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-29	96.5	1.2
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	4.1e-130	430.0	7.9
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	7.2e-62	204.1	0.7
NC_009437.1\|WP_011915697.1\|88804_89428_+\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	3.7e-101	331.6	4.9
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	1.3e-68	225.7	0.4
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	1.5e-27	91.5	3.0
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	5.3e-204	673.9	38.4
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	3.9e-69	227.8	0.9
NC_009437.1\|WP_011915684.1\|74395_75388_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	4.4e-135	444.7	14.9
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	2.5e-38	125.9	0.7

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915679.1\|66751_67504_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.21822e-25
NC_009437.1\|WP_011915683.1\|73847_74345_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.85265e-72
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	8.34054e-55
NC_009437.1\|WP_011915685.1\|75393_75657_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.61681e-32
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	2.67979e-107
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	7.02741e-19
NC_009437.1\|WP_011915676.1\|62397_63519_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.57552e-06
NC_009437.1\|WP_011915689.1\|79661_80039_-\|hypothetical-protein	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	5.54119e-06
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.33983e-77
NC_009437.1\|WP_011915673.1\|69029_70259_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.13425e-33
NC_009437.1\|WP_039767848.1\|63758_65825_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	2.53479e-162
NC_009437.1\|WP_011915678.1\|65846_66731_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.53305e-73
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.70805e-25
NC_009437.1\|WP_011915681.1\|68071_68863_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915684.1\|74395_75388_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.11716e-159
NC_009437.1\|WP_011915690.1\|80232_81618_+\|ATP-binding-protein	gnl\|CDD\|367293	pfam03008, DUF234, Archaea bacterial proteins of unknown function.	8.83056e-32

>NC_009437.1|WP_011915687.1|76833_77115_-|hypothetical-protein
MSDIKTIQEDIKHEVAIDIIAGLLGSLTNIKLKTVHSDLDKEIKEQKLQKIEEIRKTLCKERDYVYRGDKDAIERALTTYALLYRLIDKEEVI
>NC_009437.1|WP_011915685.1|75393_75657_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDVNEKRVAKALKKCRKYLTWVQNSVFEGNISEATLRRLILELEKVLDLSEDSVIIYKFQNTWYSERQIIGIEKNPVDFIT
>NC_009437.1|WP_011915684.1|74395_75388_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKDLYVFNSGFLRRKDNTIMFETDEGKKYFPVEEIESVFIFGEVDINKRFLEFMTEKNICVHFFNRYEYYVGTYYPREHYNSGIVILKQVEFYNDYNKRITIARSIVEGAVLNMLVVLRYYNSRGNMLKDEIETIERMRHNISACSDVNTLMALEGNIREIYYKCFNKILDDENFTFVRRSKNPPLDRINALISFGNSLLYATTLGEIYQTQLDPRIGYLHSTNQRKFSLNLDISEIFKPIIVDRVIFSLVNKKVLSEKHFEKELNGIILNDQGKKLFISEYNQKLYSTIMHPKLNTQVSYKRLIRMEAYKLQKLFLENIEYKPFVARW
>NC_009437.1|WP_011915683.1|73847_74345_+|CRISPR-associated-protein-Cas4
MDIYMTGVYIWYYNICKRQVWLMAHSILPDENDDNIVLGRFLHEYYYRKDQKEIKFGNAVFDILYQDKDEIVIGETKKSSRFKEASRYQLLFYIKLLKEAGISAKGVLFYPEERKKEEVVLTAEEEEKLEKMIADIETIIEKESPPPAATCRYCPKCAYREYCFA
>NC_009437.1|WP_011915673.1|69029_70259_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915681.1|68071_68863_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_011915679.1|66751_67504_+|CRISPR-associated-protein-Cas5
MKFLVFDLKGKFAHFRKFYTNSSSLSYLVPPRTVIEGMVAAILGFERDSYYGVLSAENLLVAVQKIERTYKIVQTVNYIKATTVNELKNPNTHTQVPLEILAGYNGFVGFRVFVMPKDEEIYSLLRARLESGKSEFPIYFGSAPFAAKTEFLGEFEACRWEDSRAGILTVLDAGLIKSLSLELESTSSLALMKDRMPCDFDKDRFATKVKTYIHDENLNPIWVDLDSSAQDKVYYIKEFSGDRKECICVM
>NC_009437.1|WP_011915678.1|65846_66731_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MEKKIIDKNSEILFTYDAKLCNPNGDPDEENRPRMDWEKEINLVSDVRVKRYIRDYADDQGIPIYVRKIEGKSVKPEEVIKSVGEDIDELETFIDIRLFGATIPIKKETRTYIGPVQFNWGYSLNKVELLEASITSHFASDEKKQQGAIGKDYRVKYSFIAFSGIVSARRAKETRLTEDDLKFLDRAMKEAIPLQATRSKIGQYPRLYMRVEYLDDKTLLGDLRDYVKLIEVVEKPRKIEDVQLDITDLAEFLHKNKNVISKIYYFKHPELCLVCGGNVVDFKDAFGTFELEEV
>NC_009437.1|WP_039767848.1|63758_65825_+|TIGR02556-family-CRISPR-associated-protein
MIEEIVEIGDVLIGDASGNDAHLSVLTEDIEVPSGDEKRYVAKIDFSTNEKKINIDCAEEIDDETAKKYVYVGSAEGANSSQWFASTTSFAYFLTETIPNLVECEIPVVSDICKKILDMYFVKVKEYLSKSSELIDEEKRYLQQRIEKKYVYFLDTDNIVVNDNKRLTEKPLSQIYKELINNAKSTDKIFKQLRDVFTKECTNGLKKLTELKPQQIGLYVLCVDGKPLTSYPEYIDAVIAYKRQVKKGTEKTKKKQKEGNICYICLDTDNLSFEGFKKTKFKYFTTNQNIFASYLDQKNYAKNITVCEKCLLKLVAGDIFLRNKLKTQLGSFDVYVLPTFVYTSAKLTKNYLEELSQNITNSLNTAWNYNSLEKLRDDIYNFLSYFDQNHYFLLNLIFYREAQASTKIIRFVPDINPSIFDKIYNAASKVFSQYTDLIGNDPSFKISLESIYYSVPIRLKNISESKEAQRLLNIYDAIFSGKRIARDVLIENFIKAVGVVVYGKEGYNLSKFIGNDIASMVIRMVFVIRFLEILDCLEVERGMDVAQLNLSEDLKNYIQQMNYDEPKTALFLLGVLIGEIGAKQYLATKDRQDDSAGHKPILNKINYNGIDKPKLIRLCNDVHNKLRQEKILPYTEMIFAEMKRLLDKHIDSWKLDKYETLFYILSGYAYKTQKVILNASSNFQDTSN
>NC_009437.1|WP_011915676.1|62397_63519_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYHFELAILVT
>NC_009437.1|WP_011915689.1|79661_80039_-|hypothetical-protein
MFSSLFAIMFLRKHLKLFLEFEEYLQSAEEKVIEVLKACLPAALRKLAKKEIETARQAIEELRGCVKVMPLFQNLRKIREELIFEGLQQGLQQGIQQGLQQGIQQGFEQGKIETAEKMIMKGYSD
>NC_009437.1|WP_011915690.1|80232_81618_+|ATP-binding-protein
MFVGRKYELETLNRLYNEDKFHFVVVYGRRRVGKTTLLTQFCKNKQSIFFVAEEYNDKINLESFSDKVLSYFNLGGLISRFESWEKAFMFLAHQAKDKRLIVVIDEFPYIVNTNKSIPSLLQNLIDHHLKNTKLFLIVCGSSVSFIEKEVLSYKSPLYGRRTAQLIVEPFDFFESREFFPNYNFEEQVIAYGVLGGIPQYLSIFDNTKDIYENIRTKILDKSSYLYEEPKLLLRQEVREPALYNSIIEAIATGSSKLNEIATKVGVEVDKCAKYISVLIDLKILERVTPLFSEAKSRKSIYKIKDNFFRFWYRFVFTNKSLIEQGLIDEVIDNKIKPFMNEFIGEVYEQICMDYLKILNKEKRLPFIFENIGKWWGNNPYKKREEEIDIVAFNQDNILFGECKWRNQKVDMSVLNNLIEKSMIFNYCKKFYVLFSKSGFTDEVISFAKQNPHVLLISEFEV
>NC_009437.1|WP_049754857.1|82100_82340_+|hypothetical-protein
MLYQDIDQQNLEKLYETCRKITANYKIVVSVLDDSSINKERLKCLYDYSMDCEVLKTIYIREFSAWTGRQEIRGSLEEN
>NC_009437.1|WP_011915692.1|82851_85335_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MIFYNAHQTEEDKNFDYTLFLGAILHDIGKFFMRTENQDAKKNISKEYEMFYKGEGKYSPRHQEWSAFFVEHFLPESLKTVTSLVLYHHRPSSYQQFLISVADKISAKVDRKDLSDEEAADDKSKYLISVLSQISLDEKKGNTKTPYYKLLKKRYEVEPPSKSFNTDAKDDYQNLWSEFSKKVNASKNGFGSSFDLEDFATAIYNLLRIYTYNIPSAFYYSQPDISLWAHSKSTAAIAFCLDRQLKKEFSQENERVRVLEAINTKLLPGNESAIKKGDYPYFCLVKGDVSGIQDFVFDTKMDGALKALKAKSFYISFLLDTIARYILKEEKMPICNLIYNGGGHFYLLMPGYFMRKLSQYQQKIDKILFSAHRRALSVLLEAAEVDLYDFAHNFGDCFDRVSRNIQKKKACKFKNVLEETKMEFFEPWEDYEQKCPHCGRKIEPKEDDPDFCRFCKSFVDFGDDLMKSLFVIDSWGREKEFSEFSDIHNVLKAFGRYVQFSNHYESVSNTLILDRSRIEDLQRKQMEIEKGQKGPKSGFESEFCEDLDISTHVPFKNEDEKVLMLIDDIAESAKGIKTWGIVRGDVDNLGDIFKKGLGEDNSISRVMTLSEEFSIFFGYYFNKLIKEQNGNIMVIYAGGDDFCILGQWDVLPQTAHRIYTEFRSFSCWNSDVTLSMGFEIAPDKKYPIYRVAMVCGDHLEQAKEYERENGKKKDCFAFGANFVGWEEFEDLKKLKELIADLVGNKNVSKALINGIYAVCSLKKMADDQRELFKAWRFVYFMARLKERYSKCSTELESVLNKIIDEKTNTLYKHSYLAARWAELELRR
>NC_009437.1|WP_011915693.1|85366_85777_+|type-III-A-CRISPR-associated-protein-Csm2
MPAQGGNNALALKDDILSKIETAIDPEKDKDGKAFSDVAEKTGQLLKESGVTITQIRKLFTEVKRLSPEDDNYKYKLKLLKAKLAYTAGRFKKMKHFQEIIDKALPVAEKSPEALNRFKDFFEAAVAYHKYFGGDQ
>NC_009437.1|WP_011915694.1|85806_86598_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MDVILKGKYIIKCKIRAVTGLHIGEGNNSIEIGGIDNAVVKDAEGKPYIPGSSLKGKMRALMEFAEGKVKDDLMVVAVKKGDKPEICLHMCDDKDCPVCGLFGRNHGLHDKKSGGKIDLTDAVIPTRLIVRDAKLIESSITDEMKENLDLEWTEVKFENNIDRITSKAHPRQSERVPAGAEFSAEFVVNRYEVDGSDDGEKYLSKFIKAMKLLEDDYLGGQGSRGNGKVKFVDIEIFYKDSSDYEKDSNDLKPIATAPSLDQL
>NC_009437.1|WP_011915695.1|86641_87652_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MGKGKLYRVLMHFTTPLHIGEKEKIYNITQTFAHSDMLMSGIINAYSLLYGNSSTNQLVESFLQKSLPFEISSTMPYVGNEFFVPKPIGLHLHLYKDRGIIEVEKDKEIKKVKFIREKDLLSNFPGKYRVAGSFLLPKDMLHKFGDSEKAPSLGKIKERARVSIDRLSSSSNIYYFSHFEFKDNAGLWFYLRINDQSLEDKVKAAMRLLSDEGLGGDRTCGLGSFKVNFEECSMPEENDRAKYYMSLSLVNPQSEDELKSALYYEILTRSGYIYSKAGLGIKRKAVRAFAEGTVFSGKVCGRVVDVTPQNFSQHRVYCFGLAFLLPLPEGVMMIDN
>NC_009437.1|WP_011915696.1|87641_88808_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTTEFFESRVYEVEILTPTVIGGQDKIQSFEFVRDGAYLYFINFDRLLEENLFKESFVDELTRGLSGNLKDFNIHDVMTKYNMDFRQFSKYKLKLEGVQKFPREIVAFVKSAGRFYIPGSSLKGGIRSFVTKALKKDLIKHYEDALNPKGRVNPQHLSSDADKKVFSSPDQSPFKYLQISDSSFADPDDVAVFEIKVMNICSGQVKWFAGVKEGKTNNVDNPEQSSSILAEGIKPGVKVFGSMKVEKDFVDGNEVVSGLKGKIGINVSAASPEEFLAEVMRAVARDYIKREIDFYSKYNQAQIVSEYRKLLDILNSLEPNQFLIQIGFSTGYLSKTVGIFFTKTHFEKLKMIDKKSNIYPDLFPKTRRIIFKNGQVYTVPGWIKVTIR
>NC_009437.1|WP_011915697.1|88804_89428_+|hypothetical-protein
MMGCDEKVVKYFSFHFWAREDGVFLPSSYYSKVYEALKSLLATEHFTISPIRTKNKKEVEDGIWVFEDFRIYLATPFLELVTQNILKIYENLNALFDDIYLKRISCRTQQPKIIGNLLSGVFAQKDGACLEYDRQPEIFSEMLRRHLLSIYYQKFGVYPEDQRFFFVIKDGLKKQHLIESRIEYFGKYEIFASKELLEMFCQTFCVK
>NC_009437.1|WP_011915698.1|89761_90178_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MADKYIFPAVFEPGENGGYCVTFPDLPGCITEGETLEEALYMAKEALELHLYGLEEDNEEIPEPTPPEKLDIPRGAFVVPIIVYMPPVREEMANKSVNKTVTLPRWLNKAAEEAHINFSQVLQEALKVKLGIKERLQA

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Crispr_ID: NC_009437_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_5

90671-90830

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCAAAGGGCAGGCTACAAACGCT	PILER-CR
GTTTCAATCCCCAAAGGGCAGGCTACAAAC	CRISPRCasFinder

2 spacers

cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx20,csx1

The CRISPR arrays of NC_009437_5

>merge|NC_009437|5|90671-90830|PILER-CR,CRISPRCasFinder
GTTTCAATCCCCAAAGGGCAGGCTACAAACGCTGTTCTGCGTACAAGAGGTGGTTTTGGATGCCCTGTTTCAATCCCCAAAGGGCAGGCTACAAACGGTTTTAGACGCTGAAGAGGAAAGCAAAGAAGAAGTTTCAATCCCCAAAGGGCAGGCTACAAAC

>NC_009437|5|4|90671-90830|PILER-CR
GTTTCAATCCCCAAAGGGCAGGCTACAAACGCT	GTTCTGCGTACAAGAGGTGGTTTTGGATGCCCT
GTTTCAATCCCCAAAGGGCAGGCTACAAACGGT	TTTAGACGCTGAAGAGGAAAGCAAAGAAGAA
GTTTCAATCCCCAAAGGGCAGGCTACAAAC

>NC_009437|5|4|90671-90830|CRISPRCasFinder
GTTTCAATCCCCAAAGGGCAGGCTACAAAC	GCTGTTCTGCGTACAAGAGGTGGTTTTGGATGCCCT
GTTTCAATCCCCAAAGGGCAGGCTACAAAC	GGTTTTAGACGCTGAAGAGGAAAGCAAAGAAGAA
GTTTCAATCCCCAAAGGGCAGGCTACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_009437.1\|WP_011915699.1\|90266_90449_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_009437.1\|WP_011915710.1\|99798_100008_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_009437.1\|WP_011915708.1\|98848_99307_-\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_009437.1\|WP_049754857.1\|82100_82340_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915707.1\|97786_98800_-\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|236230
NC_009437.1\|WP_011915697.1\|88804_89428_+\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915706.1\|97391_97745_-\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|131886
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_009437.1\|WP_011915709.1\|99519_99732_+\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_009437.1\|WP_011915700.1\|91212_92184_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NC_009437.1\|WP_011915705.1\|95657_97085_+\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_009437.1\|WP_011915704.1\|95214_95613_+\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915702.1\|92745_93018_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915690.1\|80232_81618_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367293
NC_009437.1\|WP_011915703.1\|93782_94952_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.70805e-25
NC_009437.1\|WP_011915699.1\|90266_90449_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.30437e-22
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	2.67979e-107
NC_009437.1\|WP_011915708.1\|98848_99307_-\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	9.75415e-67
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	8.34054e-55
NC_009437.1\|WP_011915707.1\|97786_98800_-\|stage-V-sporulation-protein-AD	gnl\|CDD\|236230	PRK08304, PRK08304, stage V sporulation protein AD; Validated.	0
NC_009437.1\|WP_011915710.1\|99798_100008_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.33581e-22
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.33983e-77
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	7.02741e-19
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.13425e-33
NC_009437.1\|WP_011915709.1\|99519_99732_+\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	2.57769e-10
NC_009437.1\|WP_011915700.1\|91212_92184_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.85823e-21
NC_009437.1\|WP_011915705.1\|95657_97085_+\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	6.79848e-62
NC_009437.1\|WP_011915706.1\|97391_97745_-\|stage-V-sporulation-protein-AE	gnl\|CDD\|131886	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	1.57984e-45
NC_009437.1\|WP_011915690.1\|80232_81618_+\|ATP-binding-protein	gnl\|CDD\|367293	pfam03008, DUF234, Archaea bacterial proteins of unknown function.	8.83056e-32

>NC_009437.1|WP_011915699.1|90266_90449_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MKPKELIKILEEDGWYEVRQKGSHKQFRHPVKKGLVTVPYHNKDLDPKTLNSILKQAGLK
>NC_009437.1|WP_011915698.1|89761_90178_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MADKYIFPAVFEPGENGGYCVTFPDLPGCITEGETLEEALYMAKEALELHLYGLEEDNEEIPEPTPPEKLDIPRGAFVVPIIVYMPPVREEMANKSVNKTVTLPRWLNKAAEEAHINFSQVLQEALKVKLGIKERLQA
>NC_009437.1|WP_011915697.1|88804_89428_+|hypothetical-protein
MMGCDEKVVKYFSFHFWAREDGVFLPSSYYSKVYEALKSLLATEHFTISPIRTKNKKEVEDGIWVFEDFRIYLATPFLELVTQNILKIYENLNALFDDIYLKRISCRTQQPKIIGNLLSGVFAQKDGACLEYDRQPEIFSEMLRRHLLSIYYQKFGVYPEDQRFFFVIKDGLKKQHLIESRIEYFGKYEIFASKELLEMFCQTFCVK
>NC_009437.1|WP_011915696.1|87641_88808_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTTEFFESRVYEVEILTPTVIGGQDKIQSFEFVRDGAYLYFINFDRLLEENLFKESFVDELTRGLSGNLKDFNIHDVMTKYNMDFRQFSKYKLKLEGVQKFPREIVAFVKSAGRFYIPGSSLKGGIRSFVTKALKKDLIKHYEDALNPKGRVNPQHLSSDADKKVFSSPDQSPFKYLQISDSSFADPDDVAVFEIKVMNICSGQVKWFAGVKEGKTNNVDNPEQSSSILAEGIKPGVKVFGSMKVEKDFVDGNEVVSGLKGKIGINVSAASPEEFLAEVMRAVARDYIKREIDFYSKYNQAQIVSEYRKLLDILNSLEPNQFLIQIGFSTGYLSKTVGIFFTKTHFEKLKMIDKKSNIYPDLFPKTRRIIFKNGQVYTVPGWIKVTIR
>NC_009437.1|WP_011915695.1|86641_87652_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MGKGKLYRVLMHFTTPLHIGEKEKIYNITQTFAHSDMLMSGIINAYSLLYGNSSTNQLVESFLQKSLPFEISSTMPYVGNEFFVPKPIGLHLHLYKDRGIIEVEKDKEIKKVKFIREKDLLSNFPGKYRVAGSFLLPKDMLHKFGDSEKAPSLGKIKERARVSIDRLSSSSNIYYFSHFEFKDNAGLWFYLRINDQSLEDKVKAAMRLLSDEGLGGDRTCGLGSFKVNFEECSMPEENDRAKYYMSLSLVNPQSEDELKSALYYEILTRSGYIYSKAGLGIKRKAVRAFAEGTVFSGKVCGRVVDVTPQNFSQHRVYCFGLAFLLPLPEGVMMIDN
>NC_009437.1|WP_011915694.1|85806_86598_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MDVILKGKYIIKCKIRAVTGLHIGEGNNSIEIGGIDNAVVKDAEGKPYIPGSSLKGKMRALMEFAEGKVKDDLMVVAVKKGDKPEICLHMCDDKDCPVCGLFGRNHGLHDKKSGGKIDLTDAVIPTRLIVRDAKLIESSITDEMKENLDLEWTEVKFENNIDRITSKAHPRQSERVPAGAEFSAEFVVNRYEVDGSDDGEKYLSKFIKAMKLLEDDYLGGQGSRGNGKVKFVDIEIFYKDSSDYEKDSNDLKPIATAPSLDQL
>NC_009437.1|WP_011915693.1|85366_85777_+|type-III-A-CRISPR-associated-protein-Csm2
MPAQGGNNALALKDDILSKIETAIDPEKDKDGKAFSDVAEKTGQLLKESGVTITQIRKLFTEVKRLSPEDDNYKYKLKLLKAKLAYTAGRFKKMKHFQEIIDKALPVAEKSPEALNRFKDFFEAAVAYHKYFGGDQ
>NC_009437.1|WP_011915692.1|82851_85335_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MIFYNAHQTEEDKNFDYTLFLGAILHDIGKFFMRTENQDAKKNISKEYEMFYKGEGKYSPRHQEWSAFFVEHFLPESLKTVTSLVLYHHRPSSYQQFLISVADKISAKVDRKDLSDEEAADDKSKYLISVLSQISLDEKKGNTKTPYYKLLKKRYEVEPPSKSFNTDAKDDYQNLWSEFSKKVNASKNGFGSSFDLEDFATAIYNLLRIYTYNIPSAFYYSQPDISLWAHSKSTAAIAFCLDRQLKKEFSQENERVRVLEAINTKLLPGNESAIKKGDYPYFCLVKGDVSGIQDFVFDTKMDGALKALKAKSFYISFLLDTIARYILKEEKMPICNLIYNGGGHFYLLMPGYFMRKLSQYQQKIDKILFSAHRRALSVLLEAAEVDLYDFAHNFGDCFDRVSRNIQKKKACKFKNVLEETKMEFFEPWEDYEQKCPHCGRKIEPKEDDPDFCRFCKSFVDFGDDLMKSLFVIDSWGREKEFSEFSDIHNVLKAFGRYVQFSNHYESVSNTLILDRSRIEDLQRKQMEIEKGQKGPKSGFESEFCEDLDISTHVPFKNEDEKVLMLIDDIAESAKGIKTWGIVRGDVDNLGDIFKKGLGEDNSISRVMTLSEEFSIFFGYYFNKLIKEQNGNIMVIYAGGDDFCILGQWDVLPQTAHRIYTEFRSFSCWNSDVTLSMGFEIAPDKKYPIYRVAMVCGDHLEQAKEYERENGKKKDCFAFGANFVGWEEFEDLKKLKELIADLVGNKNVSKALINGIYAVCSLKKMADDQRELFKAWRFVYFMARLKERYSKCSTELESVLNKIIDEKTNTLYKHSYLAARWAELELRR
>NC_009437.1|WP_049754857.1|82100_82340_+|hypothetical-protein
MLYQDIDQQNLEKLYETCRKITANYKIVVSVLDDSSINKERLKCLYDYSMDCEVLKTIYIREFSAWTGRQEIRGSLEEN
>NC_009437.1|WP_011915690.1|80232_81618_+|ATP-binding-protein
MFVGRKYELETLNRLYNEDKFHFVVVYGRRRVGKTTLLTQFCKNKQSIFFVAEEYNDKINLESFSDKVLSYFNLGGLISRFESWEKAFMFLAHQAKDKRLIVVIDEFPYIVNTNKSIPSLLQNLIDHHLKNTKLFLIVCGSSVSFIEKEVLSYKSPLYGRRTAQLIVEPFDFFESREFFPNYNFEEQVIAYGVLGGIPQYLSIFDNTKDIYENIRTKILDKSSYLYEEPKLLLRQEVREPALYNSIIEAIATGSSKLNEIATKVGVEVDKCAKYISVLIDLKILERVTPLFSEAKSRKSIYKIKDNFFRFWYRFVFTNKSLIEQGLIDEVIDNKIKPFMNEFIGEVYEQICMDYLKILNKEKRLPFIFENIGKWWGNNPYKKREEEIDIVAFNQDNILFGECKWRNQKVDMSVLNNLIEKSMIFNYCKKFYVLFSKSGFTDEVISFAKQNPHVLLISEFEV
>NC_009437.1|WP_011915700.1|91212_92184_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNNNQLPHNINDLEYKYIFSNKSIFLRLLKRLDEIGIFKNLTEDQLERIDKSYVLPDFSQEESDLLYKVSLKEKEIIFYILFEHQSSVDHSMPLRLLFYITDIYRDYIKDFDRGEIKKKGFTLPAVVPIVFYDGEDRWTAARRLKEKILGFEEFGNCVIDFEYILIDLNQAESILQVKDILSLILKLNRIKRYEELERLILELGEYLLGAEEKEIEVLKVCLPAALKELDEIEVEAAKRAIDESVRGGEKVMPLFQNLRKIREELIFEGLQQGLQQGLQQGFEQSRIETAERMILKGYKDEEIAEITGLSLERIKELRAKHRN
>NC_009437.1|WP_011915702.1|92745_93018_-|hypothetical-protein
MIIRKIVNGYQLEKIVDIPEAAKNMPVELIVRIPSNKRKKSKKGDEILNELSGVFGKYKNPNLIPSEEEAWKNTVREIYEKEQEENFKTN
>NC_009437.1|WP_011915703.1|93782_94952_+|hypothetical-protein
MKKKFVKVLSLTLTLALICLFSHTISYALTSPVTVKLSDYKVYIDGVQLPVYSVNGNLMVNVFHLDYYGYKILSSENGVYCFRQLGESVVGVPHSKWNEKINTVNIKPKNWCILNGQQVPVLYLNKQPFIFLNELYRKNGVKMNGKRVDIVLGILDGEQKTSEYYDQLNFLLKILKNDTKIVEYTIAYAYYDPKKRKSYLGTSEDIDELFDEMEKNNYTLLQYYVLGCTYYDSDYDKQVYVFEDCVDLIKYYTTQEYINKLRFIFGLYQKANNNCPIYVSSTEVDTKTYNFPVAKIELFNLSLTPVDAIELSFSCLTIFGQPAKDSSGSMQYTGIKQNICIPALDNYMTLWDLSKYSSVGKISNVVIKRLHFIDDSIWINQKSTGGKSF
>NC_009437.1|WP_011915704.1|95214_95613_+|hypothetical-protein
MNRLFLIFNHILTEEQEKEAREVLGVEEIISLPQDLQNFWSNIPPDVDLNEEMFKPIVSFLSRNKSQNLNYCLIQGDFGATVYLVSWCFKNGFIPIYATTKRTAQEVIKPDGSVELIKIFKHERFRRYILCS
>NC_009437.1|WP_011915705.1|95657_97085_+|TIGR01897-family-CRISPR-associated-protein
MKIIYQIGRFDNPKAALKEFFITKFNDEVVNFSKVSELSSFVLRDFLRQQGQEAKAAVIYPVSIVLNERLKDWVEDDSLKEELERIYENPSEYLKSPFDIIDRLPLERLRDETVVIHSLGTYLKNVELDGSYDDIVLEILFDMIERYMNEDVDEIYLDISSGHNIYISAMIEASRHFAVFTRLMHWIHEEKRPKIYLTFSDPIIGSTAESFEIHIQPQSYTAFFSSPISKKEACDHNFSFLRNIYQEPQDDQKGNNKVLQKQQIRQKRRSLKEKIEMFTILFSAIKNNVPLYLYYHPYHSIDEIKNELKNLISHAKDQLLKDFKSSPKLNKKAYLDAILSLEFYMGIVEVLVLEKYNITMFCQETGFDLENLGKTFAEIYTIFGIPMNWTMLGNEISNDTEKIQAYGETQQWTRLRKIVDPTKPIADEPDKRNFFAHSGLEGNVTEVKYDGLKVYVRYIQGLPQGMIDCWLKERV
>NC_009437.1|WP_011915706.1|97391_97745_-|stage-V-sporulation-protein-AE
MDYLMAFVVGGLICVAGQILIDKTKLTSARVLVLFVTLGAILQGLGLYQKLVDIAGAGATVPLPGFGYSLAKGAIEEVKKIGLIGAFTGGVSRTAGGIAAAVFFGYVIALIFNPKSK
>NC_009437.1|WP_011915707.1|97786_98800_-|stage-V-sporulation-protein-AD
MKKVGKSTFKFENCPIISDCFTIVGKKEGEGPLGLFFDMVVEDEYAGQKSWELAEGKLLNIAISKLIQKSGFTPDEVDLILSGDLLNQLTSSHFAARDLNIPFIGLYGACSTFALSVGLACVFVDGGFAKNIIAATSSHFCSAEKQFRYPLELGCQRPPTAQWTVTGAASFLIKPEDGTQKPKITHFTVGKILDYGIKDSNNMGACMAPAAFDTITTHLEDTKRDFTYYDIIVTGDLGYVGRKLLEELFKKEGKTLSFELLDCGILMFDQKTQDTGAGASGCAASACIFGGYFYKLMLQKTFKRILIVPTGALLSSSTVQLGESIPVIAHALSIEIE
>NC_009437.1|WP_011915708.1|98848_99307_-|stage-V-sporulation-protein-AC
MNLKEKKAKEYQDMVKAHELKTNLLKNCIFAFVVGGIICDIGQAFLNLYSMYFPKDEAQTLTSITMIFLGAFLTGIGVYDKIGRFAGAGSIVPITGFANSIVSPAVEYKKEGFVFGVGSKMFLIAGPVLVYGISTSILIGLVYYFIKIFPKI
>NC_009437.1|WP_011915709.1|99519_99732_+|DUF1659-domain-containing-protein
MAANPLTGNLLIKLQNGTTSTGKIRVKTLSYDIRPDAQDLDVYQVAQAIASLQTKPLYAIIRQNNFELVY
>NC_009437.1|WP_011915710.1|99798_100008_+|DUF2922-domain-containing-protein
MLTLVLTFRLQNGKTFRLSIPDPKSNLTAQEVENAMNLIIQKNIFSVSAPIVEKVSARIIDRNVNQLIG

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Crispr_ID: NC_009437_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_6

93156-93317

TypeIII

Consensus_repeat	Method
GCGTTTCAATCCCCAAAGGGTAGGCTACAAACC	PILER-CR
GTTTCAATCCCCAAAGGGTAGGCTACAAAC	CRISPRCasFinder

2 spacers

cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx20,csx1

The CRISPR arrays of NC_009437_6

>merge|NC_009437|6|93156-93317|PILER-CR,CRISPRCasFinder
GCGTTTCAATCCCCAAAGGGCAGGCTACAAACCCAGTTCCCCAAAAGCGAGCGTTACACGTTGGCGGCGTTTCAATCCCCAAAGGGTAGGCTACAAACCATAATTTAAGCTTATTAACCTCTTGTCTCCGTGTTTCAATCCCCAAAGGGTAGGCTACAAACA

>NC_009437|6|5|93156-93317|PILER-CR
GCGTTTCAATCCCCAAAGGGCAGGCTACAAACC	CAGTTCCCCAAAAGCGAGCGTTACACGTTGGCG
GCGTTTCAATCCCCAAAGGGTAGGCTACAAACC	ATAATTTAAGCTTATTAACCTCTTGTCTCC
GTGTTTCAATCCCCAAAGGGTAGGCTACAAACA

>NC_009437|6|5|93158-93316|CRISPRCasFinder
GTTTCAATCCCCAAAGGGCAGGCTACAAAC	CCAGTTCCCCAAAAGCGAGCGTTACACGTTGGCGGC
GTTTCAATCCCCAAAGGGTAGGCTACAAAC	CATAATTTAAGCTTATTAACCTCTTGTCTCCGT
GTTTCAATCCCCAAAGGGTAGGCTACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_009437.1\|WP_011915699.1\|90266_90449_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_009437.1\|WP_011915710.1\|99798_100008_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_009437.1\|WP_011915708.1\|98848_99307_-\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885
NC_009437.1\|WP_011915712.1\|100327_100840_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_009437.1\|WP_011915707.1\|97786_98800_-\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|236230
NC_009437.1\|WP_011915697.1\|88804_89428_+\|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915711.1\|100100_100250_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_009437.1\|WP_011915706.1\|97391_97745_-\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|131886
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NC_009437.1\|WP_011915703.1\|93782_94952_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915709.1\|99519_99732_+\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_009437.1\|WP_011915702.1\|92745_93018_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915705.1\|95657_97085_+\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NC_009437.1\|WP_011915704.1\|95214_95613_+\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	unknown
NC_009437.1\|WP_011915700.1\|91212_92184_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915698.1\|89761_90178_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.70805e-25
NC_009437.1\|WP_011915699.1\|90266_90449_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.30437e-22
NC_009437.1\|WP_011915695.1\|86641_87652_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	8.34054e-55
NC_009437.1\|WP_011915708.1\|98848_99307_-\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	9.75415e-67
NC_009437.1\|WP_011915692.1\|82851_85335_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	2.67979e-107
NC_009437.1\|WP_011915707.1\|97786_98800_-\|stage-V-sporulation-protein-AD	gnl\|CDD\|236230	PRK08304, PRK08304, stage V sporulation protein AD; Validated.	0
NC_009437.1\|WP_011915711.1\|100100_100250_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.24737e-11
NC_009437.1\|WP_011915710.1\|99798_100008_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.33581e-22
NC_009437.1\|WP_011915694.1\|85806_86598_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.33983e-77
NC_009437.1\|WP_011915696.1\|87641_88808_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	7.02741e-19
NC_009437.1\|WP_011915709.1\|99519_99732_+\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	2.57769e-10
NC_009437.1\|WP_011915700.1\|91212_92184_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.85823e-21
NC_009437.1\|WP_011915705.1\|95657_97085_+\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	6.79848e-62
NC_009437.1\|WP_011915706.1\|97391_97745_-\|stage-V-sporulation-protein-AE	gnl\|CDD\|131886	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE. This model describes stage V sporulation protein AE, a paralog of stage V sporulation protein AC. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAE have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	1.57984e-45
NC_009437.1\|WP_011915693.1\|85366_85777_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.13425e-33

>NC_009437.1|WP_011915702.1|92745_93018_-|hypothetical-protein
MIIRKIVNGYQLEKIVDIPEAAKNMPVELIVRIPSNKRKKSKKGDEILNELSGVFGKYKNPNLIPSEEEAWKNTVREIYEKEQEENFKTN
>NC_009437.1|WP_011915700.1|91212_92184_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNNNQLPHNINDLEYKYIFSNKSIFLRLLKRLDEIGIFKNLTEDQLERIDKSYVLPDFSQEESDLLYKVSLKEKEIIFYILFEHQSSVDHSMPLRLLFYITDIYRDYIKDFDRGEIKKKGFTLPAVVPIVFYDGEDRWTAARRLKEKILGFEEFGNCVIDFEYILIDLNQAESILQVKDILSLILKLNRIKRYEELERLILELGEYLLGAEEKEIEVLKVCLPAALKELDEIEVEAAKRAIDESVRGGEKVMPLFQNLRKIREELIFEGLQQGLQQGLQQGFEQSRIETAERMILKGYKDEEIAEITGLSLERIKELRAKHRN
>NC_009437.1|WP_011915699.1|90266_90449_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MKPKELIKILEEDGWYEVRQKGSHKQFRHPVKKGLVTVPYHNKDLDPKTLNSILKQAGLK
>NC_009437.1|WP_011915698.1|89761_90178_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MADKYIFPAVFEPGENGGYCVTFPDLPGCITEGETLEEALYMAKEALELHLYGLEEDNEEIPEPTPPEKLDIPRGAFVVPIIVYMPPVREEMANKSVNKTVTLPRWLNKAAEEAHINFSQVLQEALKVKLGIKERLQA
>NC_009437.1|WP_011915697.1|88804_89428_+|hypothetical-protein
MMGCDEKVVKYFSFHFWAREDGVFLPSSYYSKVYEALKSLLATEHFTISPIRTKNKKEVEDGIWVFEDFRIYLATPFLELVTQNILKIYENLNALFDDIYLKRISCRTQQPKIIGNLLSGVFAQKDGACLEYDRQPEIFSEMLRRHLLSIYYQKFGVYPEDQRFFFVIKDGLKKQHLIESRIEYFGKYEIFASKELLEMFCQTFCVK
>NC_009437.1|WP_011915696.1|87641_88808_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTTEFFESRVYEVEILTPTVIGGQDKIQSFEFVRDGAYLYFINFDRLLEENLFKESFVDELTRGLSGNLKDFNIHDVMTKYNMDFRQFSKYKLKLEGVQKFPREIVAFVKSAGRFYIPGSSLKGGIRSFVTKALKKDLIKHYEDALNPKGRVNPQHLSSDADKKVFSSPDQSPFKYLQISDSSFADPDDVAVFEIKVMNICSGQVKWFAGVKEGKTNNVDNPEQSSSILAEGIKPGVKVFGSMKVEKDFVDGNEVVSGLKGKIGINVSAASPEEFLAEVMRAVARDYIKREIDFYSKYNQAQIVSEYRKLLDILNSLEPNQFLIQIGFSTGYLSKTVGIFFTKTHFEKLKMIDKKSNIYPDLFPKTRRIIFKNGQVYTVPGWIKVTIR
>NC_009437.1|WP_011915695.1|86641_87652_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MGKGKLYRVLMHFTTPLHIGEKEKIYNITQTFAHSDMLMSGIINAYSLLYGNSSTNQLVESFLQKSLPFEISSTMPYVGNEFFVPKPIGLHLHLYKDRGIIEVEKDKEIKKVKFIREKDLLSNFPGKYRVAGSFLLPKDMLHKFGDSEKAPSLGKIKERARVSIDRLSSSSNIYYFSHFEFKDNAGLWFYLRINDQSLEDKVKAAMRLLSDEGLGGDRTCGLGSFKVNFEECSMPEENDRAKYYMSLSLVNPQSEDELKSALYYEILTRSGYIYSKAGLGIKRKAVRAFAEGTVFSGKVCGRVVDVTPQNFSQHRVYCFGLAFLLPLPEGVMMIDN
>NC_009437.1|WP_011915694.1|85806_86598_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MDVILKGKYIIKCKIRAVTGLHIGEGNNSIEIGGIDNAVVKDAEGKPYIPGSSLKGKMRALMEFAEGKVKDDLMVVAVKKGDKPEICLHMCDDKDCPVCGLFGRNHGLHDKKSGGKIDLTDAVIPTRLIVRDAKLIESSITDEMKENLDLEWTEVKFENNIDRITSKAHPRQSERVPAGAEFSAEFVVNRYEVDGSDDGEKYLSKFIKAMKLLEDDYLGGQGSRGNGKVKFVDIEIFYKDSSDYEKDSNDLKPIATAPSLDQL
>NC_009437.1|WP_011915693.1|85366_85777_+|type-III-A-CRISPR-associated-protein-Csm2
MPAQGGNNALALKDDILSKIETAIDPEKDKDGKAFSDVAEKTGQLLKESGVTITQIRKLFTEVKRLSPEDDNYKYKLKLLKAKLAYTAGRFKKMKHFQEIIDKALPVAEKSPEALNRFKDFFEAAVAYHKYFGGDQ
>NC_009437.1|WP_011915692.1|82851_85335_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MIFYNAHQTEEDKNFDYTLFLGAILHDIGKFFMRTENQDAKKNISKEYEMFYKGEGKYSPRHQEWSAFFVEHFLPESLKTVTSLVLYHHRPSSYQQFLISVADKISAKVDRKDLSDEEAADDKSKYLISVLSQISLDEKKGNTKTPYYKLLKKRYEVEPPSKSFNTDAKDDYQNLWSEFSKKVNASKNGFGSSFDLEDFATAIYNLLRIYTYNIPSAFYYSQPDISLWAHSKSTAAIAFCLDRQLKKEFSQENERVRVLEAINTKLLPGNESAIKKGDYPYFCLVKGDVSGIQDFVFDTKMDGALKALKAKSFYISFLLDTIARYILKEEKMPICNLIYNGGGHFYLLMPGYFMRKLSQYQQKIDKILFSAHRRALSVLLEAAEVDLYDFAHNFGDCFDRVSRNIQKKKACKFKNVLEETKMEFFEPWEDYEQKCPHCGRKIEPKEDDPDFCRFCKSFVDFGDDLMKSLFVIDSWGREKEFSEFSDIHNVLKAFGRYVQFSNHYESVSNTLILDRSRIEDLQRKQMEIEKGQKGPKSGFESEFCEDLDISTHVPFKNEDEKVLMLIDDIAESAKGIKTWGIVRGDVDNLGDIFKKGLGEDNSISRVMTLSEEFSIFFGYYFNKLIKEQNGNIMVIYAGGDDFCILGQWDVLPQTAHRIYTEFRSFSCWNSDVTLSMGFEIAPDKKYPIYRVAMVCGDHLEQAKEYERENGKKKDCFAFGANFVGWEEFEDLKKLKELIADLVGNKNVSKALINGIYAVCSLKKMADDQRELFKAWRFVYFMARLKERYSKCSTELESVLNKIIDEKTNTLYKHSYLAARWAELELRR
>NC_009437.1|WP_011915703.1|93782_94952_+|hypothetical-protein
MKKKFVKVLSLTLTLALICLFSHTISYALTSPVTVKLSDYKVYIDGVQLPVYSVNGNLMVNVFHLDYYGYKILSSENGVYCFRQLGESVVGVPHSKWNEKINTVNIKPKNWCILNGQQVPVLYLNKQPFIFLNELYRKNGVKMNGKRVDIVLGILDGEQKTSEYYDQLNFLLKILKNDTKIVEYTIAYAYYDPKKRKSYLGTSEDIDELFDEMEKNNYTLLQYYVLGCTYYDSDYDKQVYVFEDCVDLIKYYTTQEYINKLRFIFGLYQKANNNCPIYVSSTEVDTKTYNFPVAKIELFNLSLTPVDAIELSFSCLTIFGQPAKDSSGSMQYTGIKQNICIPALDNYMTLWDLSKYSSVGKISNVVIKRLHFIDDSIWINQKSTGGKSF
>NC_009437.1|WP_011915704.1|95214_95613_+|hypothetical-protein
MNRLFLIFNHILTEEQEKEAREVLGVEEIISLPQDLQNFWSNIPPDVDLNEEMFKPIVSFLSRNKSQNLNYCLIQGDFGATVYLVSWCFKNGFIPIYATTKRTAQEVIKPDGSVELIKIFKHERFRRYILCS
>NC_009437.1|WP_011915705.1|95657_97085_+|TIGR01897-family-CRISPR-associated-protein
MKIIYQIGRFDNPKAALKEFFITKFNDEVVNFSKVSELSSFVLRDFLRQQGQEAKAAVIYPVSIVLNERLKDWVEDDSLKEELERIYENPSEYLKSPFDIIDRLPLERLRDETVVIHSLGTYLKNVELDGSYDDIVLEILFDMIERYMNEDVDEIYLDISSGHNIYISAMIEASRHFAVFTRLMHWIHEEKRPKIYLTFSDPIIGSTAESFEIHIQPQSYTAFFSSPISKKEACDHNFSFLRNIYQEPQDDQKGNNKVLQKQQIRQKRRSLKEKIEMFTILFSAIKNNVPLYLYYHPYHSIDEIKNELKNLISHAKDQLLKDFKSSPKLNKKAYLDAILSLEFYMGIVEVLVLEKYNITMFCQETGFDLENLGKTFAEIYTIFGIPMNWTMLGNEISNDTEKIQAYGETQQWTRLRKIVDPTKPIADEPDKRNFFAHSGLEGNVTEVKYDGLKVYVRYIQGLPQGMIDCWLKERV
>NC_009437.1|WP_011915706.1|97391_97745_-|stage-V-sporulation-protein-AE
MDYLMAFVVGGLICVAGQILIDKTKLTSARVLVLFVTLGAILQGLGLYQKLVDIAGAGATVPLPGFGYSLAKGAIEEVKKIGLIGAFTGGVSRTAGGIAAAVFFGYVIALIFNPKSK
>NC_009437.1|WP_011915707.1|97786_98800_-|stage-V-sporulation-protein-AD
MKKVGKSTFKFENCPIISDCFTIVGKKEGEGPLGLFFDMVVEDEYAGQKSWELAEGKLLNIAISKLIQKSGFTPDEVDLILSGDLLNQLTSSHFAARDLNIPFIGLYGACSTFALSVGLACVFVDGGFAKNIIAATSSHFCSAEKQFRYPLELGCQRPPTAQWTVTGAASFLIKPEDGTQKPKITHFTVGKILDYGIKDSNNMGACMAPAAFDTITTHLEDTKRDFTYYDIIVTGDLGYVGRKLLEELFKKEGKTLSFELLDCGILMFDQKTQDTGAGASGCAASACIFGGYFYKLMLQKTFKRILIVPTGALLSSSTVQLGESIPVIAHALSIEIE
>NC_009437.1|WP_011915708.1|98848_99307_-|stage-V-sporulation-protein-AC
MNLKEKKAKEYQDMVKAHELKTNLLKNCIFAFVVGGIICDIGQAFLNLYSMYFPKDEAQTLTSITMIFLGAFLTGIGVYDKIGRFAGAGSIVPITGFANSIVSPAVEYKKEGFVFGVGSKMFLIAGPVLVYGISTSILIGLVYYFIKIFPKI
>NC_009437.1|WP_011915709.1|99519_99732_+|DUF1659-domain-containing-protein
MAANPLTGNLLIKLQNGTTSTGKIRVKTLSYDIRPDAQDLDVYQVAQAIASLQTKPLYAIIRQNNFELVY
>NC_009437.1|WP_011915710.1|99798_100008_+|DUF2922-domain-containing-protein
MLTLVLTFRLQNGKTFRLSIPDPKSNLTAQEVENAMNLIIQKNIFSVSAPIVEKVSARIIDRNVNQLIG
>NC_009437.1|WP_011915711.1|100100_100250_+|YvrJ-family-protein
MQEIITNIANIGFPIVLCVYLLTRFESKIDKLSDTIDKLSEKIIQIKSN
>NC_009437.1|WP_011915712.1|100327_100840_+|hypothetical-protein
MDKIPRDIIYFVPQYLDSGDGVMLLLLNGEKKVCHMSIRSFTKKLYSMYAIDPFTIKKLISKKIGQKNLLPIVLPDVTFIPVKTRKAKVATDPIFGYVNLSQVFKIDEKEEGFEILFKCGAVLQCFGSAKYFKRRITAASIISDYFSSMWAKGVCTIKEECELENVFSLE

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Crispr_ID: NC_009437_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_7

344075-347921

Unclear

I-A

Consensus_repeat	Method
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	CRT

58 spacers

cas2,cas1,cas4,cas3,cas5,cas7

The CRISPR arrays of NC_009437_7

>merge|NC_009437|7|344075-347921|PILER-CR,CRISPRCasFinder,CRT
GTCTTATCTGAACTATGAGGGATGTAAACATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAGGTCTTATCTGAACTATGAGGGATGTAAACTTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCCGTCTTATCTGAACTATGAGGGATGTAAACCACTTTTTATCTTTCTATAATCCGCTTCTTGCATGTGTCTTATCTGAACTATGAGGGATGTAAACAGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTGGTCTTATCTGAACTATGAGGGATGTAAACGAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAAGTCTTATCTGAACTATGAGGGATGTAAACACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAAGTCTTATCTGAACTATGAGGGATGTAAACTGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAAGTCTTATCTGAACTATGAGGGATGTAAACATTCCTGAGTACACAACTCCTAAAACCTTAATGGCGTCTTATCTGAACTATGAGGGATGTAAACTATGAGTATAGACGCAGTGTAATAAAGTCAAAAATTGTCTTATCTGAACTATGAGGGATGTAAACTTCGGCAAAAACAGCATTCATGACATCTTATGCAATGAGTCTTATCTGAACTATGAGGGATGTAAACTTTTGCAAGGGATAGATACGACAGTGCATATTATAAGGTCTTATCTGAACTATGAGGGATGTAAACGGATATGGGTGTATTCGATTTTACTTACAAGCTCGGGTCTTATCTGAACTATGAGGGATGTAAACAGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTAGTCTTATCTGAACTATGAGGGATGTAAACTGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCCGTCTTATCTGAACTATGAGGGATGTAAACCTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGCGTCTTATCTGAACTATGAGGGATGTAAACCTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACAGTCTTATCTGAACTATGAGGGATGTAAACGCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTGGTCTTATCTGAACTATGAGGGATGTAAACCTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTGGTCTTATCTGAACTATGAGGGATGTAAACGTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCCGTCTTATCTGAACTATGAGGGATGTAAACTGCAAACTATCTGTTATTGCCATTGCAACAATTTCGAGTCTTATCTGAACTATGAGGGATGTAAACCTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAAGTCTTATCTGAACTATGAGGGATGTAAACTTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCAGTCTTATCTGAACTATGAGGGATGTAAACTTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTCGTCTTATCTGAACTATGAGGGATGTAAACAGCTTTGCACAGCTGCACACAAGAGCAATTGAGGTGTCTTATCTGAACTATGAGGGATGTAAACGTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATATGTCTTATCTGAACTATGAGGGATGTAAACTTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAAGTCTTATCTGAACTATGAGGGATGTAAACCATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGAGTCTTATCTGAACTATGAGGGATGTAAACTTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTAGTCTTATCTGAACTATGAGGGATGTAAACTTATTACTCACCTTCCTTTATGATTTCAAAATTGCAAGTCTTATCTGAACTATGAGGGATGTAAACTTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTTGTCTTATCTGAACTATGAGGGATGTAAACTTTATCGGGTAAGAGATAATCTCGTTGGTATATACAGTCTTATCTGAACTATGAGGGATGTAAACATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGTGTCTTATCTGAACTATGAGGGATGTAAACTGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAAGTCTTATCTGAACTATGAGGGATGTAAACCAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGCGTCTTATCTGAACTATGAGGGATGTAAACATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCGGTCTTATCTGAACTATGAGGGATGTAAACTCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCAGTCTTATCTGAACTATGAGGGATGTAAACCGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAGGTCTTATCTGAACTATGAGGGATGTAAACATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTTGTCTTATCTGAACTATGAGGGATGTAAACCCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGAGTCTTATCTGAACTATGAGGGATGTAAACGAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACCGTCTTATCTGAACTATGAGGGATGTAAACAAATTCATCTATCGTTAAGCCCATCTTCAAACATTGGTCTTATCTGAACTATGAGGGATGTAAACATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAAGTCTTATCTGAACTATGAGGGATGTAAACAATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACAGTCTTATCTGAACTATGAGGGATGTAAACCCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGGGTCTTATCTGAACTATGAGGGATGTAAACTTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGGGTCTTATCTGAACTATGAGGGATGTAAACCCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATAGTCTTATCTGAACTATGAGGGATGTAAACTTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGAGTCTTATCTGAACTATGAGGGATGTAAACTATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGAGTCTTATCTGAACTATGAGGGATGTAAACGACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAAGTCTTATCTGAACTATGAGGGATGTAAACGATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCAGTCTTATCTGAACTATGAGGGATGTAAACATTGGAAGAAATCAACCGGCGGTTGACCTACACCCTGTCTTATCTGAACTATGAGGGATGTAAACATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGAGTCTTATCTGAACTATGAGGGATGTAAACTTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGAGTCTTATCTGAACTATGAGGGATGTAAACATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTAGTCTTATCTGAACTATGAGGGATGTAAACAGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAAGTCTTATCTGAACTATGAGGGATGTAAACTCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTCGTCTTATCTGAACTATGAGGGATGTAAACGTATTGCTATCGAAAAAAAAACATATGAAAAATTAAGTCTTATCTGAACTATGAGGGATGTAAACCTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAAGTCTTATCTGAACTATGAGGGATGTAAAC

>NC_009437|7|6|344075-347921|PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CACTTTTTATCTTTCTATAATCCGCTTCTTGCATGT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCCTGAGTACACAACTCCTAAAACCTTAATGGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGAGTATAGACGCAGTGTAATAAAGTCAAAAATT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGGCAAAAACAGCATTCATGACATCTTATGCAATGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTGCAAGGGATAGATACGACAGTGCATATTATAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	GGATATGGGTGTATTCGATTTTACTTACAAGCTCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCAAACTATCTGTTATTGCCATTGCAACAATTTCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCTTTGCACAGCTGCACACAAGAGCAATTGAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTACTCACCTTCCTTTATGATTTCAAAATTGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTATCGGGTAAGAGATAATCTCGTTGGTATATACA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCG
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCA
GTCTTATCTGAACTATGAGGGATGTAAAC	CGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACC
GTCTTATCTGAACTATGAGGGATGTAAAC	AAATTCATCTATCGTTAAGCCCATCTTCAAACATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	CCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGAAGAAATCAACCGGCGGTTGACCTACACCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTA
GTCTTATCTGAACTATGAGGGATGTAAAC	AGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTATTGCTATCGAAAAAAAAACATATGAAAAATTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC

>NC_009437|7|6|344075-347921|CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CACTTTTTATCTTTCTATAATCCGCTTCTTGCATGT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCCTGAGTACACAACTCCTAAAACCTTAATGGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGAGTATAGACGCAGTGTAATAAAGTCAAAAATT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGGCAAAAACAGCATTCATGACATCTTATGCAATGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTGCAAGGGATAGATACGACAGTGCATATTATAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	GGATATGGGTGTATTCGATTTTACTTACAAGCTCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCAAACTATCTGTTATTGCCATTGCAACAATTTCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCTTTGCACAGCTGCACACAAGAGCAATTGAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTACTCACCTTCCTTTATGATTTCAAAATTGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTATCGGGTAAGAGATAATCTCGTTGGTATATACA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCG
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCA
GTCTTATCTGAACTATGAGGGATGTAAAC	CGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACC
GTCTTATCTGAACTATGAGGGATGTAAAC	AAATTCATCTATCGTTAAGCCCATCTTCAAACATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	CCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGAAGAAATCAACCGGCGGTTGACCTACACCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTA
GTCTTATCTGAACTATGAGGGATGTAAAC	AGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTATTGCTATCGAAAAAAAAACATATGAAAAATTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC

>NC_009437|7|2|344075-347921|CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CACTTTTTATCTTTCTATAATCCGCTTCTTGCATGT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCCTGAGTACACAACTCCTAAAACCTTAATGGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGAGTATAGACGCAGTGTAATAAAGTCAAAAATT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGGCAAAAACAGCATTCATGACATCTTATGCAATGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTGCAAGGGATAGATACGACAGTGCATATTATAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	GGATATGGGTGTATTCGATTTTACTTACAAGCTCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCAAACTATCTGTTATTGCCATTGCAACAATTTCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCTTTGCACAGCTGCACACAAGAGCAATTGAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTACTCACCTTCCTTTATGATTTCAAAATTGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTATCGGGTAAGAGATAATCTCGTTGGTATATACA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCG
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCA
GTCTTATCTGAACTATGAGGGATGTAAAC	CGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACC
GTCTTATCTGAACTATGAGGGATGTAAAC	AAATTCATCTATCGTTAAGCCCATCTTCAAACATTG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	CCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGAAGAAATCAACCGGCGGTTGACCTACACCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTA
GTCTTATCTGAACTATGAGGGATGTAAAC	AGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTATTGCTATCGAAAAAAAAACATATGAAAAATTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915920.1\|335425_335959_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|180607
NC_009437.1\|WP_011915938.1\|367480_369709_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	unknown	unknown	gnl\|CDD\|377636
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	unknown	unknown	gnl\|CDD\|236414
NC_009437.1\|WP_011915916.1\|329621_330614_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_009437.1\|WP_011915919.1\|334187_335429_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	unknown	unknown	gnl\|CDD\|187884
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	3.73034e-15
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.88559e-24
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.55006e-64
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	gnl\|CDD\|180607	PRK06526, PRK06526, transposase; Provisional.	1.49367e-37
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	gnl\|CDD\|377636	pfam06257, VEG, Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.	2.87937e-22
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.11121e-53
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	gnl\|CDD\|236414	PRK09213, PRK09213, pur operon repressor; Provisional.	8.58724e-140
NC_009437.1\|WP_011915916.1\|329621_330614_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.82817e-146
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	2.50362e-54
NC_009437.1\|WP_011915919.1\|334187_335429_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	0.00195062
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.05125e-63
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63

>NC_009437.1|WP_041722450.1|343602_343866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011917894.1|342367_343348_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_011915924.1|341846_342359_+|CRISPR-associated-protein-Cas4
MENYQEFNDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGKVLHEHSYPKENKKEVLIDNLIMIDILSDGSIREVKYSSKMKEADIMQVMYYLYYLKQRGIQKQGIINYPKEKRKEVLRLTPEYEEKVKHALKEIEEITTRSIPPPVTKQKICKSCAYFEFCWG
>NC_009437.1|WP_011915667.1|340738_341686_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915923.1|337948_340675_+|CRISPR-associated-helicase/endonuclease-Cas3
MSEIWAKSVNEKNNNKRVTLSNHVSDVLKVFEFFKKKFSDNQFILNAAEIAIFFHDLGKVLPSFQIKALGNIGYYPRDVVYEIPHSLFSVFWINIDKLKEKLNSEEYLNYIISAIAYHHWKDNFDEIISLENKQLKQVCEKVIYEWKDELKENLDKEFGKISSYDEYKELIDVNITWLKAILSHRLFVNLAVPPYKFDYHPLRGEVKKEWIFISGVLQRCDHFASWCEEEGIEEELGNVEIDAPEKENVTKIISRSIGDKAWQFKELEKCSEKNTILIAPTGYGKTEFAFLWSSGEKLFYTLPLRASVNNTFERAKNAFGCNKTGLLHSDADVYLLDKSSDETGSIKLCELAKQLSYPVIVSTGDQFFPYALRPPGFERIFVSLSYSRIAIDEIQAYSPKACAIIVKFLEWVYKMGGKFLLMTATMPKFVIDYLKDVIPDFCKKVNFVNIYEKEKDAFSKLYKHKIRLNLIETKDKQFDIPDEIIREVLQKAKDNKRVLVILNTVGFAQSVYDKLKNSADEQLKERIFLIHSRYTLKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDIDADILYTEMCPLDCLVQRMGRVLRRYFYKDGEVINKGNNNKFNLDKPFKAFEKEHSEVNVNVFIFNNNNLQSGGHRVYSRELIILSLAWLWKLKNTQNSLEELFNKITKQKFNNNEIEKLFTDEFTDLISNRQSSGKKSKKSKDENKESVYKYLLSNSDWLKTLDKMEIELSEYDKYILVTLFYSSLKEDGDYLKDFYNTLYILNSGLMSERKVEAERIFRDISDVQIITKNKFEDFKKDTEEFIKSVEHDDKNKRLLFTQFKKSVLSKYVVMYFYSANFELAYKKLIAEVEMDNKWKQRFKRWLSGIYLSDKHDYNYDKGLIKINDEDKEGR
>NC_009437.1|WP_011915922.1|337128_337956_+|type-I-B-CRISPR-associated-protein-Cas5
MKETKNSIYALKIKIYQPQAHFRIPFSYQRRHTYPIPPYSTVLGLIANILGIKNLPGQEEPCVKDNCNCLYHKLKQIKIGVCGNFETKVEEYFWLRNLKAESHIGRFGSITNRYVGGHIEHIGGQMPCIVDVLHNARILIYLYHCDKEFLEVIKSSFENPVNKTSVMHLGRAEDWIVIEDISYVNLIIDKINGNYKNFFWVPEKVFGFDGNFDFKKVNGLAYNMTSFYKIQNGVRNFRCIKAKLNNGDFGDIVAYFDTEDNIPVFLADFEEDKDE
>NC_009437.1|WP_011915921.1|335962_337111_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MYFNEKSYIRHVTVTAIFEAWALNRDEKIGGNILSIKKLKRDLETVSYIGKPGIRHYLFETLKKGFGWKETFVTVTKQQDETKVIQFDVTKDDILSSPELDAFGYMYTIKGQASITRKAPLGITKAIGLNLYYGDMSFYANHDLVNRGIKQGIDDMSPNPYSKEEHISFYRLSFTIDADVLGKDEWIVENEPKVEDGIIKIILSEDKTKQVSYIEQLDERVYRVEKGIIRYDKIELVGKRPKYKIVFEINKEEKLTRIKQILEAIKDGLYAQSSGEANTLVPLFLIAGYVKVPSPVFHPYIEIEPVSGVKKCRVIGVNGCLKNSWIVDKVFLMDCERMQVERKEELIFNKNNLGKFEVTENWDEFLKVLDDEYTTSSPSIGE
>NC_009437.1|WP_011915920.1|335425_335959_+|hypothetical-protein
MNEKFNFDEIKKTLEEAILQNQIEFKTFAQAVSSYKKLGFELEKILEWAVNNAKGEDKIKLWGLYKEFSLQNISELCEWLRWYGESLRNSKVYERFFDKEKKVPKAITFRVLELTRLGKREEVFHIILREFVNAQEEVGKNFVKAFNPKYSVEGFKVMVYSFLSALLGKEMEKNKEG
>NC_009437.1|WP_011915919.1|334187_335429_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MDKLILYPGNWLYNASVIGFLNVISRRLGEDVIESWLNEDGGLTIDKAIFDPVKIVKEDIPKSLVYYVEYLTEHEDIEEWLGKNSNSEKLKEYYDRMGEFGYKLVRAFNKLFSKNMPYQNLVQQGDRKEFITFLLNLFSVTNNKITYRCDFCGIERAIEPRETSKLEKRLFKFDLMHSSLLGASAGEFPNSFWNNSASLRICPICSYFIIHHHLALTQLEDGWEIFINAPSFQVMWYLNKYIKAINEKVKTDRVRRLLGMSVMEMALKTNIQLGKWTMMNIEVVSKLKIRIKGKKEYYKIGFYSLPHEVISLLLNRKISSILTEIGETSILNLVLSQNYERIMEIGEKVFKIALKKLSKESNKAKNDKSDEDDKFIAHYFQLVKEKSDLVKISQKLFELYLLIMEKTKKEALI
>NC_009437.1|WP_011915916.1|329621_330614_-|biotin-synthase-BioB
MLNFLQSVQFAKEIEKKIIEYEQDIDISEATMLYEIAKHDFDLVKNLADTIKRYYFKNNIELCSIYPAKVGMCTEDCKFCSQSIYHSCKIEIKDVASVDEVIEYLENIIAFPVKRFSLVTSGGELNDSEFERIIDIISYISKNYDIHLCASLGFLTKERAKKLMLAGVTRYHNNLETSSTYFKNICSTHTQAQKIETLKIAKETGLEICSGGIISMGEDMIERIKLAFELRELKVDSVPINILNPIKGTPFEDMKIMDQNEIFITLALFRIVLPRKTILLAGGKENALKDMEKIAYKCGINGCMVGNYLTTQGMGIKEKVEMLESLGLEV
>NC_009437.1|WP_011915681.1|347999_348791_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_011915673.1|349325_350555_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915673.1|354142_355372_-|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915930.1|360007_360493_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEISINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVTFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKTMLARK
>NC_009437.1|WP_011915933.1|362589_362862_+|Veg-family-protein
MVDKLHLQQIKKDIEALKGEKVLVRANKGRKKMIEVEGILENTYSNIFVVKFPIDRECKQFRCVTYTYSDLITNTVEIILCRTNTKVNVM
>NC_009437.1|WP_011915934.1|363054_364590_+|DUF3794-domain-containing-protein
MDKRYEKIEYMNVYGSDSQKVIVEGEILLPEIKPDVLKVLQTDADVFITSVEVLNDRVVVQGEVDFRIIYLSNDPLKKISFVSSCAEFSKVFDMLGVRPGMAYEVKDDLIYSYCSALSQRKLSAKAIVEICLLVKSSTSIEYLDHIEDESLRFLKERITISNPLTFTEQITKKEILEIPQGKSSIREILRSFARLSDKNIKFDRKKLAIDLKIDIKTLYSPDIGQNPLETVEHEMFAEHFVELSNIPDDLEPIVKFYIKSFKVSPKTDEVGELRRIEYDIVVEAEIAFNQLETIEPIVDVYSTMHELKESKKFLNIEQFVGKTRQVHTIKEVVVLPSEPEQIFSLSGRVEIDMVKAEKNAAQVKGVLVVFLIYISKDEQDIIKSATTQIPFSIKIDLDGTEEQDKVYDDIDIENLSFSILSANEVEIRAHLVAELWAKRSVNVEIISDVQMLEKIEKEEERLASMYIYTVQKGDTLWKIAKKYKTTVEKLMSFNQLENAEIFPGQKLLIVR
>NC_009437.1|WP_011915935.1|364645_366013_-|UDP-N-acetylmuramate--L-alanine-ligase
MNKFFLIGIGGISMSAIALILKNHGHIVEGSDMQESITTRMLREKGINVYIGHDENHIKGDEIVIFTAAIPKDNPELVKAKRLGLKVYERAEFLGMLMKDYKNVIAVSGTHGKTTTTSMIGYILKKALLNPTVLVGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFIVANLDDENVYSVASYLKQNVIYFSTKTKADFWADNITSCNGYYEFDVVNKDFKHLCHIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRLEKLGKIDGIVLYDDYAHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKSLSLADKVIVTDVYAAREKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIGAGDVNKCIELILDKSPVKS
>NC_009437.1|WP_011915936.1|366215_367034_+|pur-operon-repressor
MEKAGKAERLIYITNILTQNPMKIFSLSFFCEKLNCAKSTLSEDIDLISKVFVETGQGRLETISGAAGGVYYIPVMKKEDEIEFLNFLKNELQNPERIVSGGFVYINDIVFSPEIIKKAAKIFLRLFLEKEIDYIATVEAKGIALASYVAQYFNKPLVVARSGSKFTEGSTVNISYISGTTGKIETMTMAKKAIKRGSRVLFIDDFMRGGGTVRGMRDLLSEFESTLVGVGVLIATKDKKSIDIDYKSLLILDTLDAENKKIEFSINNQVIS
>NC_009437.1|WP_011915937.1|367155_367422_+|septation-regulator-SpoVG
MQVTDVRIRKITNEGRMKAIVSVTFDNCFVVHDIKIIEGQNGLFIAMPSRKTPEGEFKDIAHPINQEMRDMVQKAVIEKYEAVISAGE
>NC_009437.1|WP_011915938.1|367480_369709_-|hypothetical-protein
MTKRLVAFAVIIMFISTFSTAIFATGIQNLPEKAHFSIEPKGNAVEILKGNQVVAKILPPELLNNTSTKKSKEIFTIDIPFIENGAIKWRIEKSEPSDISFLTEGKNKVLKLDFHTMNAFYKITSPYISLKDEYQSVMLSFDYKVDYQNLIHFKEEENVNVEIAIFGENKTKILSLPEKLKLTPGWGTFKTSFSLPIDARYITFEVSQNGKNVKTVQFRNFKIGFVKPSKYSFALKRVDKYNNLIEQVFENGFQKITRKVFVSSSEDVINVEEILKSKEDHQVFKEYSPVVFESKPLFILKRDYSISKFTSPMYVTDSLSDFYLKLYNCAMGYTNNYDSIETYNLKNKANVFLFFSNSDDIKYFLIGKNKEHIWTTTQLFKKGFEKSFTYSIFPADFGYAIKSRAPDGRKGILVFSNHADSNMISIIKAIMFGTTDTKDSSYMKKGFVGYKIPITWGFFYKSIKGIPGFDNPEYKKLIEFLAQKGIEVVLHTASPIAKENTPQLIEKALNATSYLKLDDWIDHSLSDGTRCGDLKSEGAIKTSKNYTFNLFLKHGYKYCWSYLDVKLDDLNMLEPNQVNKHPQIFFKNYNFGEGDSLYQWNSVRYRNLLSMLTKPRLEKFVNENGVCIIHDYFAHPMQKRKFFIVKNKNVYISRQLDNNLKLVAIFRDKKLLWVPTVKQFVNYKIALKNVIITPLDKSALLVDNKNGFDIKGFTLITILQNGQERRIVTTLVPGINIISLPQ

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Crispr_ID: NC_009437_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_8

351757-353160

Unclear

I-A

Consensus_repeat	Method
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	CRT

21 spacers

cas2,cas1,cas4,cas3,cas5,cas7

The CRISPR arrays of NC_009437_8

>merge|NC_009437|8|351757-353160|PILER-CR,CRISPRCasFinder,CRT
GTCTTATCTGAACTATGAGGGATGTAAACCTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATCGTCTTATCTGAACTATGAGGGATGTAAACTGTGATATACCTTCACGTCTTCCTCGTATAAGTCATAGTCTTATCTGAACTATGAGGGATGTAAACAATTCACATGCGAATAGAGGTCCATAGTGATTGAGATGTCTTATCTGAACTATGAGGGATGTAAACGAGACAAAATCAGCTTACAAATTCCCTCATCATGAGGGTCTTATCTGAACTATGAGGGATGTAAACAGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGAGTCTTATCTGAACTATGAGGGATGTAAACATAGCTGCTCAAATACACTACGTGGGTATGTCGTAAGTCTTATCTGAACTATGAGGGATGTAAACTTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCATGTCTTATCTGAACTATGAGGGATGTAAACAGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAAGTCTTATCTGAACTATGAGGGATGTAAACAAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTAGTCTTATCTGAACTATGAGGGATGTAAACCACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGAGTCTTATCTGAACTATGAGGGATGTAAACCTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGCGTCTTATCTGAACTATGAGGGATGTAAACTAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAGGTCTTATCTGAACTATGAGGGATGTAAACTTTACTATGCATGAAAACAGATTTATATTTGAACAAGTCTTATCTGAACTATGAGGGATGTAAACGATATCATGATTTTGCAAAAGATTGTTGCAAGGATTGTCTTATCTGAACTATGAGGGATGTAAACGCTAATGCTGCTGCTGCATGTATACCATTGCGAGTCTTATCTGAACTATGAGGGATGTAAACGGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAGGTCTTATCTGAACTATGAGGGATGTAAACATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAAGTCTTATCTGAACTATGAGGGATGTAAACGCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTTGTCTTATCTGAACTATGAGGGATGTAAACCTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGGGTCTTATCTGAACTATGAGGGATGTAAACTGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACAGTCTTATCTGAACTATGAGGGATGTAAACCATAGAAAGGCGGACTTTTTATTACTGGAAGGATGAAGGTCTTATCTGAACTATGAGCATTCCTGTA

>NC_009437|8|7|351757-353093|PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGATATACCTTCACGTCTTCCTCGTATAAGTCATA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATTCACATGCGAATAGAGGTCCATAGTGATTGAGAT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAGACAAAATCAGCTTACAAATTCCCTCATCATGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGCTGCTCAAATACACTACGTGGGTATGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	CACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTACTATGCATGAAAACAGATTTATATTTGAACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATATCATGATTTTGCAAAAGATTGTTGCAAGGATT
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTAATGCTGCTGCTGCATGTATACCATTGCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACA
GTCTTATCTGAACTATGAGGGATGTAAAC

>NC_009437|8|7|351757-353160|CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGATATACCTTCACGTCTTCCTCGTATAAGTCATA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATTCACATGCGAATAGAGGTCCATAGTGATTGAGAT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAGACAAAATCAGCTTACAAATTCCCTCATCATGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGCTGCTCAAATACACTACGTGGGTATGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	CACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTACTATGCATGAAAACAGATTTATATTTGAACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATATCATGATTTTGCAAAAGATTGTTGCAAGGATT
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTAATGCTGCTGCTGCATGTATACCATTGCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATAGAAAGGCGGACTTTTTATTACTGGAAGGATGAAG
GTCTTATCTGAACTATGAGCATTCCTGTA

>NC_009437|8|3|351757-353160|CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTGATATACCTTCACGTCTTCCTCGTATAAGTCATA
GTCTTATCTGAACTATGAGGGATGTAAAC	AATTCACATGCGAATAGAGGTCCATAGTGATTGAGAT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAGACAAAATCAGCTTACAAATTCCCTCATCATGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAGCTGCTCAAATACACTACGTGGGTATGTCGTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAA
GTCTTATCTGAACTATGAGGGATGTAAAC	AAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	CACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTACTATGCATGAAAACAGATTTATATTTGAACAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GATATCATGATTTTGCAAAAGATTGTTGCAAGGATT
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTAATGCTGCTGCTGCATGTATACCATTGCGA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTT
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATAGAAAGGCGGACTTTTTATTACTGGAAGGATGAAG
GTCTTATCTGAACTATGAGCATTCCTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915920.1\|335425_335959_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915940.1\|370718_372047_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|180607
NC_009437.1\|WP_011915938.1\|367480_369709_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	unknown	unknown	gnl\|CDD\|377636
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	unknown	unknown	gnl\|CDD\|236414
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011915939.1\|369798_370647_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	3.73034e-15
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.88559e-24
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.55006e-64
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	gnl\|CDD\|180607	PRK06526, PRK06526, transposase; Provisional.	1.49367e-37
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	gnl\|CDD\|377636	pfam06257, VEG, Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.	2.87937e-22
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.11121e-53
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	gnl\|CDD\|236414	PRK09213, PRK09213, pur operon repressor; Provisional.	8.58724e-140
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	2.50362e-54
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.05125e-63
NC_009437.1\|WP_011915939.1\|369798_370647_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	2.81073e-60
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63

>NC_009437.1|WP_011915673.1|349325_350555_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915681.1|347999_348791_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_041722450.1|343602_343866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011917894.1|342367_343348_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_011915924.1|341846_342359_+|CRISPR-associated-protein-Cas4
MENYQEFNDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGKVLHEHSYPKENKKEVLIDNLIMIDILSDGSIREVKYSSKMKEADIMQVMYYLYYLKQRGIQKQGIINYPKEKRKEVLRLTPEYEEKVKHALKEIEEITTRSIPPPVTKQKICKSCAYFEFCWG
>NC_009437.1|WP_011915667.1|340738_341686_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915923.1|337948_340675_+|CRISPR-associated-helicase/endonuclease-Cas3
MSEIWAKSVNEKNNNKRVTLSNHVSDVLKVFEFFKKKFSDNQFILNAAEIAIFFHDLGKVLPSFQIKALGNIGYYPRDVVYEIPHSLFSVFWINIDKLKEKLNSEEYLNYIISAIAYHHWKDNFDEIISLENKQLKQVCEKVIYEWKDELKENLDKEFGKISSYDEYKELIDVNITWLKAILSHRLFVNLAVPPYKFDYHPLRGEVKKEWIFISGVLQRCDHFASWCEEEGIEEELGNVEIDAPEKENVTKIISRSIGDKAWQFKELEKCSEKNTILIAPTGYGKTEFAFLWSSGEKLFYTLPLRASVNNTFERAKNAFGCNKTGLLHSDADVYLLDKSSDETGSIKLCELAKQLSYPVIVSTGDQFFPYALRPPGFERIFVSLSYSRIAIDEIQAYSPKACAIIVKFLEWVYKMGGKFLLMTATMPKFVIDYLKDVIPDFCKKVNFVNIYEKEKDAFSKLYKHKIRLNLIETKDKQFDIPDEIIREVLQKAKDNKRVLVILNTVGFAQSVYDKLKNSADEQLKERIFLIHSRYTLKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDIDADILYTEMCPLDCLVQRMGRVLRRYFYKDGEVINKGNNNKFNLDKPFKAFEKEHSEVNVNVFIFNNNNLQSGGHRVYSRELIILSLAWLWKLKNTQNSLEELFNKITKQKFNNNEIEKLFTDEFTDLISNRQSSGKKSKKSKDENKESVYKYLLSNSDWLKTLDKMEIELSEYDKYILVTLFYSSLKEDGDYLKDFYNTLYILNSGLMSERKVEAERIFRDISDVQIITKNKFEDFKKDTEEFIKSVEHDDKNKRLLFTQFKKSVLSKYVVMYFYSANFELAYKKLIAEVEMDNKWKQRFKRWLSGIYLSDKHDYNYDKGLIKINDEDKEGR
>NC_009437.1|WP_011915922.1|337128_337956_+|type-I-B-CRISPR-associated-protein-Cas5
MKETKNSIYALKIKIYQPQAHFRIPFSYQRRHTYPIPPYSTVLGLIANILGIKNLPGQEEPCVKDNCNCLYHKLKQIKIGVCGNFETKVEEYFWLRNLKAESHIGRFGSITNRYVGGHIEHIGGQMPCIVDVLHNARILIYLYHCDKEFLEVIKSSFENPVNKTSVMHLGRAEDWIVIEDISYVNLIIDKINGNYKNFFWVPEKVFGFDGNFDFKKVNGLAYNMTSFYKIQNGVRNFRCIKAKLNNGDFGDIVAYFDTEDNIPVFLADFEEDKDE
>NC_009437.1|WP_011915921.1|335962_337111_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MYFNEKSYIRHVTVTAIFEAWALNRDEKIGGNILSIKKLKRDLETVSYIGKPGIRHYLFETLKKGFGWKETFVTVTKQQDETKVIQFDVTKDDILSSPELDAFGYMYTIKGQASITRKAPLGITKAIGLNLYYGDMSFYANHDLVNRGIKQGIDDMSPNPYSKEEHISFYRLSFTIDADVLGKDEWIVENEPKVEDGIIKIILSEDKTKQVSYIEQLDERVYRVEKGIIRYDKIELVGKRPKYKIVFEINKEEKLTRIKQILEAIKDGLYAQSSGEANTLVPLFLIAGYVKVPSPVFHPYIEIEPVSGVKKCRVIGVNGCLKNSWIVDKVFLMDCERMQVERKEELIFNKNNLGKFEVTENWDEFLKVLDDEYTTSSPSIGE
>NC_009437.1|WP_011915920.1|335425_335959_+|hypothetical-protein
MNEKFNFDEIKKTLEEAILQNQIEFKTFAQAVSSYKKLGFELEKILEWAVNNAKGEDKIKLWGLYKEFSLQNISELCEWLRWYGESLRNSKVYERFFDKEKKVPKAITFRVLELTRLGKREEVFHIILREFVNAQEEVGKNFVKAFNPKYSVEGFKVMVYSFLSALLGKEMEKNKEG
>NC_009437.1|WP_011915673.1|354142_355372_-|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915930.1|360007_360493_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEISINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVTFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKTMLARK
>NC_009437.1|WP_011915933.1|362589_362862_+|Veg-family-protein
MVDKLHLQQIKKDIEALKGEKVLVRANKGRKKMIEVEGILENTYSNIFVVKFPIDRECKQFRCVTYTYSDLITNTVEIILCRTNTKVNVM
>NC_009437.1|WP_011915934.1|363054_364590_+|DUF3794-domain-containing-protein
MDKRYEKIEYMNVYGSDSQKVIVEGEILLPEIKPDVLKVLQTDADVFITSVEVLNDRVVVQGEVDFRIIYLSNDPLKKISFVSSCAEFSKVFDMLGVRPGMAYEVKDDLIYSYCSALSQRKLSAKAIVEICLLVKSSTSIEYLDHIEDESLRFLKERITISNPLTFTEQITKKEILEIPQGKSSIREILRSFARLSDKNIKFDRKKLAIDLKIDIKTLYSPDIGQNPLETVEHEMFAEHFVELSNIPDDLEPIVKFYIKSFKVSPKTDEVGELRRIEYDIVVEAEIAFNQLETIEPIVDVYSTMHELKESKKFLNIEQFVGKTRQVHTIKEVVVLPSEPEQIFSLSGRVEIDMVKAEKNAAQVKGVLVVFLIYISKDEQDIIKSATTQIPFSIKIDLDGTEEQDKVYDDIDIENLSFSILSANEVEIRAHLVAELWAKRSVNVEIISDVQMLEKIEKEEERLASMYIYTVQKGDTLWKIAKKYKTTVEKLMSFNQLENAEIFPGQKLLIVR
>NC_009437.1|WP_011915935.1|364645_366013_-|UDP-N-acetylmuramate--L-alanine-ligase
MNKFFLIGIGGISMSAIALILKNHGHIVEGSDMQESITTRMLREKGINVYIGHDENHIKGDEIVIFTAAIPKDNPELVKAKRLGLKVYERAEFLGMLMKDYKNVIAVSGTHGKTTTTSMIGYILKKALLNPTVLVGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFIVANLDDENVYSVASYLKQNVIYFSTKTKADFWADNITSCNGYYEFDVVNKDFKHLCHIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRLEKLGKIDGIVLYDDYAHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKSLSLADKVIVTDVYAAREKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIGAGDVNKCIELILDKSPVKS
>NC_009437.1|WP_011915936.1|366215_367034_+|pur-operon-repressor
MEKAGKAERLIYITNILTQNPMKIFSLSFFCEKLNCAKSTLSEDIDLISKVFVETGQGRLETISGAAGGVYYIPVMKKEDEIEFLNFLKNELQNPERIVSGGFVYINDIVFSPEIIKKAAKIFLRLFLEKEIDYIATVEAKGIALASYVAQYFNKPLVVARSGSKFTEGSTVNISYISGTTGKIETMTMAKKAIKRGSRVLFIDDFMRGGGTVRGMRDLLSEFESTLVGVGVLIATKDKKSIDIDYKSLLILDTLDAENKKIEFSINNQVIS
>NC_009437.1|WP_011915937.1|367155_367422_+|septation-regulator-SpoVG
MQVTDVRIRKITNEGRMKAIVSVTFDNCFVVHDIKIIEGQNGLFIAMPSRKTPEGEFKDIAHPINQEMRDMVQKAVIEKYEAVISAGE
>NC_009437.1|WP_011915938.1|367480_369709_-|hypothetical-protein
MTKRLVAFAVIIMFISTFSTAIFATGIQNLPEKAHFSIEPKGNAVEILKGNQVVAKILPPELLNNTSTKKSKEIFTIDIPFIENGAIKWRIEKSEPSDISFLTEGKNKVLKLDFHTMNAFYKITSPYISLKDEYQSVMLSFDYKVDYQNLIHFKEEENVNVEIAIFGENKTKILSLPEKLKLTPGWGTFKTSFSLPIDARYITFEVSQNGKNVKTVQFRNFKIGFVKPSKYSFALKRVDKYNNLIEQVFENGFQKITRKVFVSSSEDVINVEEILKSKEDHQVFKEYSPVVFESKPLFILKRDYSISKFTSPMYVTDSLSDFYLKLYNCAMGYTNNYDSIETYNLKNKANVFLFFSNSDDIKYFLIGKNKEHIWTTTQLFKKGFEKSFTYSIFPADFGYAIKSRAPDGRKGILVFSNHADSNMISIIKAIMFGTTDTKDSSYMKKGFVGYKIPITWGFFYKSIKGIPGFDNPEYKKLIEFLAQKGIEVVLHTASPIAKENTPQLIEKALNATSYLKLDDWIDHSLSDGTRCGDLKSEGAIKTSKNYTFNLFLKHGYKYCWSYLDVKLDDLNMLEPNQVNKHPQIFFKNYNFGEGDSLYQWNSVRYRNLLSMLTKPRLEKFVNENGVCIIHDYFAHPMQKRKFFIVKNKNVYISRQLDNNLKLVAIFRDKKLLWVPTVKQFVNYKIALKNVIITPLDKSALLVDNKNGFDIKGFTLITILQNGQERRIVTTLVPGINIISLPQ
>NC_009437.1|WP_011915939.1|369798_370647_-|divergent-polysaccharide-deacetylase-family-protein
MKLRRYILIVIKKAKLSQYFIPLLAIFCFIVLTLVYIFYNPKPQAVETSAQSQAYVALIFEDAGMDEQEIQKLLEINLPFDVAIIPFLPFSNKIALMCSKNNKEVLMHLSMEPEDQNTVWLTPRSIMNNTPDDEVEKVFKDAMLNLPHSKGFSIHLGTLVCTNEKIVSHLVNLAKANNMIIVDSTSSPRSLFPKIGKQKGIDVIPHDVILDSKNELKPIQDKFKLLFNKAKKKGFAVGIGHLGQEGGLTTIEAFKEVLKDAQRENIKFVFVSDIAKLIKQTD
>NC_009437.1|WP_011915940.1|370718_372047_-|hypothetical-protein
MENANQFITKYIYLFAITSLVFPIFMMFSSFVMTKNPSNLFISFLIMNALFLLIPYLIKKRSTGLWEKILNILFIIIIPQGFALIVLKPYGILEMFIGQIFCMGLYVHSYFVYEKEEVSISLGAILAGLWAIIIVSGLSTFLNVPKNIINQYSTYSIIFLIASVYLLNRINLENLISRRYRRTNSISTSISFINLFLSLAFIVILLLLFKFKGFAPYVVAFIVETIKFIFKIIKKILEFLNSLFATTKPMSNSNNDIAELLKNMKPAKKSLISQILDVIGYLLALGILGFLIYKALGFIKIAIEEMIRNLLLFLAKVTNNIQMVERGQNYTDIKTFILAKKRPKAKPKQTKIKKINLKKISDLNLRLRIIFKLTMEYFYQKKNYNLKTSLTPLEMGRLIARGELVNNSIIEDLIDEYNKVRYHKKYSVISTEQFEEFVKNLK

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Crispr_ID: NC_009437_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_9

356438-357983

Unclear

I-A

Consensus_repeat	Method
GTCTTATCTGAACTATGAGGGATGTAAAC	CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	CRISPRCasFinder

23 spacers

cas2,cas1,cas4,cas3,cas5,cas7

The CRISPR arrays of NC_009437_9

>merge|NC_009437|9|356438-357983|CRT,PILER-CR,CRISPRCasFinder
CAAAGGTATATTGAGAGAGGGATGTAAACAAAAAATTGCAAGGTTCTTTGGAACAAATATTGATGAGTCTTATCTGAACTATGAGGGATGTAAACTCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGCGTCTTATCTGAACTATGAGGGATGTAAACATTGGCAAAATAATTTGAAAAATATTATCAAAATAATAGTCTTATCTGAACTATGAGGGATGTAAACTTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTTGTCTTATCTGAACTATGAGGGATGTAAACTTGAATGAATTTAGCGGTATTGCTGTAGCGACTATGTCTTATCTGAACTATGAGGGATGTAAACAAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTGGTCTTATCTGAACTATGAGGGATGTAAACAAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTGGTCTTATCTGAACTATGAGGGATGTAAACAGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAACGTCTTATCTGAACTATGAGGGATGTAAACAGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATAGTCTTATCTGAACTATGAGGGATGTAAACATTTTTTTGCACGTGATGTTAGGACTTTATACAGGAGTCTTATCTGAACTATGAGGGATGTAAACCTGTAACCACCATTGAAATATTTATAATGTGCTAAAGGTCTTATCTGAACTATGAGGGATGTAAACCTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTAGTCTTATCTGAACTATGAGGGATGTAAACGCAAAGCTCAGATTAGAAACTATCTTATCAATCCACGTCTTATCTGAACTATGAGGGATGTAAACTGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAAGTCTTATCTGAACTATGAGGGATGTAAACCAAACAACACAATGTCATTGCGCCACATGTAATAGGTGTCTTATCTGAACTATGAGGGATGTAAACTGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGAGTCTTATCTGAACTATGAGGGATGTAAACTGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAAGTCTTATCTGAACTATGAGGGATGTAAACGGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAAGTCTTATCTGAACTATGAGGGATGTAAACCCTCACAGAGTACCCCCCCTCAACAGACCCTTCTAGTCTTATCTGAACTATGAGGGATGTAAACATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGCGTCTTATCTGAACTATGAGGGATGTAAACCTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTCGTCTTATCTGAACTATGAGGGATGTAAACTGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAGGTCTTATCTGAACTATGAGGGATGTAAACATTTCCAATGTTGCACATATAGGCAAATATCCGCTGCTAGTCTTATCTGAACTATGAGTGTTATTGTC

>NC_009437|9|4|356438-357983|CRT
CAAAGGTATATTGAGAGAGGGATGTAAAC	AAAAAATTGCAAGGTTCTTTGGAACAAATATTGATGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGCAAAATAATTTGAAAAATATTATCAAAATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGAATGAATTTAGCGGTATTGCTGTAGCGACTAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAAC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTTGCACGTGATGTTAGGACTTTATACAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTAACCACCATTGAAATATTTATAATGTGCTAAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCAAAGCTCAGATTAGAAACTATCTTATCAATCCAC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAACAACACAATGTCATTGCGCCACATGTAATAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTCACAGAGTACCCCCCCTCAACAGACCCTTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTCCAATGTTGCACATATAGGCAAATATCCGCTGCTA
GTCTTATCTGAACTATGAGTGTTATTGTC

>NC_009437|9|8|356504-357915|PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGCAAAATAATTTGAAAAATATTATCAAAATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGAATGAATTTAGCGGTATTGCTGTAGCGACTAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAAC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTTGCACGTGATGTTAGGACTTTATACAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTAACCACCATTGAAATATTTATAATGTGCTAAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCAAAGCTCAGATTAGAAACTATCTTATCAATCCAC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAACAACACAATGTCATTGCGCCACATGTAATAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTCACAGAGTACCCCCCCTCAACAGACCCTTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAG
GTCTTATCTGAACTATGAGGGATGTAAAC

>NC_009437|9|8|356504-357983|CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTGGCAAAATAATTTGAAAAATATTATCAAAATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	TTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGAATGAATTTAGCGGTATTGCTGTAGCGACTAT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAAC
GTCTTATCTGAACTATGAGGGATGTAAAC	AGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTTGCACGTGATGTTAGGACTTTATACAGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGTAACCACCATTGAAATATTTATAATGTGCTAAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	CTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GCAAAGCTCAGATTAGAAACTATCTTATCAATCCAC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CAAACAACACAATGTCATTGCGCCACATGTAATAGGT
GTCTTATCTGAACTATGAGGGATGTAAAC	TGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGA
GTCTTATCTGAACTATGAGGGATGTAAAC	TGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CCTCACAGAGTACCCCCCCTCAACAGACCCTTCTA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGC
GTCTTATCTGAACTATGAGGGATGTAAAC	CTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTCCAATGTTGCACATATAGGCAAATATCCGCTGCTA
GTCTTATCTGAACTATGAGTGTTATTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011915941.1\|372192_372624_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011915940.1\|370718_372047_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|180607
NC_009437.1\|WP_011915938.1\|367480_369709_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	unknown	unknown	gnl\|CDD\|377636
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	unknown	unknown	gnl\|CDD\|236414
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011915939.1\|369798_370647_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011915941.1\|372192_372624_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	2.17265e-43
NC_009437.1\|WP_011915673.1\|354142_355372_-\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011915681.1\|347999_348791_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.40014e-77
NC_009437.1\|WP_011915934.1\|363054_364590_+\|DUF3794-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	3.73034e-15
NC_009437.1\|WP_011915667.1\|340738_341686_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_011915922.1\|337128_337956_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.88559e-24
NC_009437.1\|WP_011917894.1\|342367_343348_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011915924.1\|341846_342359_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.55006e-64
NC_009437.1\|WP_041722450.1\|343602_343866_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011915930.1\|360007_360493_-\|ATP-binding-protein	gnl\|CDD\|180607	PRK06526, PRK06526, transposase; Provisional.	1.49367e-37
NC_009437.1\|WP_011915933.1\|362589_362862_+\|Veg-family-protein	gnl\|CDD\|377636	pfam06257, VEG, Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.	2.87937e-22
NC_009437.1\|WP_011915937.1\|367155_367422_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.11121e-53
NC_009437.1\|WP_011915936.1\|366215_367034_+\|pur-operon-repressor	gnl\|CDD\|236414	PRK09213, PRK09213, pur operon repressor; Provisional.	8.58724e-140
NC_009437.1\|WP_011915935.1\|364645_366013_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_009437.1\|WP_011915921.1\|335962_337111_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	2.50362e-54
NC_009437.1\|WP_011915923.1\|337948_340675_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.05125e-63
NC_009437.1\|WP_011915939.1\|369798_370647_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	2.81073e-60
NC_009437.1\|WP_011915673.1\|349325_350555_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63

>NC_009437.1|WP_011915673.1|354142_355372_-|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915673.1|349325_350555_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_011915681.1|347999_348791_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEILINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVAFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKNYVNVDLLIIDELGLRKFNQSSVDDFYEIISKRYERGSIIITTNKVFEEWPRIFYDPVLATAILDRFVHHCHFVVIKGESYRMKQREGAIKALTYDSKNDSNQLNNDN
>NC_009437.1|WP_041722450.1|343602_343866_+|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011917894.1|342367_343348_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_011915924.1|341846_342359_+|CRISPR-associated-protein-Cas4
MENYQEFNDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGKVLHEHSYPKENKKEVLIDNLIMIDILSDGSIREVKYSSKMKEADIMQVMYYLYYLKQRGIQKQGIINYPKEKRKEVLRLTPEYEEKVKHALKEIEEITTRSIPPPVTKQKICKSCAYFEFCWG
>NC_009437.1|WP_011915667.1|340738_341686_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_011915923.1|337948_340675_+|CRISPR-associated-helicase/endonuclease-Cas3
MSEIWAKSVNEKNNNKRVTLSNHVSDVLKVFEFFKKKFSDNQFILNAAEIAIFFHDLGKVLPSFQIKALGNIGYYPRDVVYEIPHSLFSVFWINIDKLKEKLNSEEYLNYIISAIAYHHWKDNFDEIISLENKQLKQVCEKVIYEWKDELKENLDKEFGKISSYDEYKELIDVNITWLKAILSHRLFVNLAVPPYKFDYHPLRGEVKKEWIFISGVLQRCDHFASWCEEEGIEEELGNVEIDAPEKENVTKIISRSIGDKAWQFKELEKCSEKNTILIAPTGYGKTEFAFLWSSGEKLFYTLPLRASVNNTFERAKNAFGCNKTGLLHSDADVYLLDKSSDETGSIKLCELAKQLSYPVIVSTGDQFFPYALRPPGFERIFVSLSYSRIAIDEIQAYSPKACAIIVKFLEWVYKMGGKFLLMTATMPKFVIDYLKDVIPDFCKKVNFVNIYEKEKDAFSKLYKHKIRLNLIETKDKQFDIPDEIIREVLQKAKDNKRVLVILNTVGFAQSVYDKLKNSADEQLKERIFLIHSRYTLKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDIDADILYTEMCPLDCLVQRMGRVLRRYFYKDGEVINKGNNNKFNLDKPFKAFEKEHSEVNVNVFIFNNNNLQSGGHRVYSRELIILSLAWLWKLKNTQNSLEELFNKITKQKFNNNEIEKLFTDEFTDLISNRQSSGKKSKKSKDENKESVYKYLLSNSDWLKTLDKMEIELSEYDKYILVTLFYSSLKEDGDYLKDFYNTLYILNSGLMSERKVEAERIFRDISDVQIITKNKFEDFKKDTEEFIKSVEHDDKNKRLLFTQFKKSVLSKYVVMYFYSANFELAYKKLIAEVEMDNKWKQRFKRWLSGIYLSDKHDYNYDKGLIKINDEDKEGR
>NC_009437.1|WP_011915922.1|337128_337956_+|type-I-B-CRISPR-associated-protein-Cas5
MKETKNSIYALKIKIYQPQAHFRIPFSYQRRHTYPIPPYSTVLGLIANILGIKNLPGQEEPCVKDNCNCLYHKLKQIKIGVCGNFETKVEEYFWLRNLKAESHIGRFGSITNRYVGGHIEHIGGQMPCIVDVLHNARILIYLYHCDKEFLEVIKSSFENPVNKTSVMHLGRAEDWIVIEDISYVNLIIDKINGNYKNFFWVPEKVFGFDGNFDFKKVNGLAYNMTSFYKIQNGVRNFRCIKAKLNNGDFGDIVAYFDTEDNIPVFLADFEEDKDE
>NC_009437.1|WP_011915921.1|335962_337111_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MYFNEKSYIRHVTVTAIFEAWALNRDEKIGGNILSIKKLKRDLETVSYIGKPGIRHYLFETLKKGFGWKETFVTVTKQQDETKVIQFDVTKDDILSSPELDAFGYMYTIKGQASITRKAPLGITKAIGLNLYYGDMSFYANHDLVNRGIKQGIDDMSPNPYSKEEHISFYRLSFTIDADVLGKDEWIVENEPKVEDGIIKIILSEDKTKQVSYIEQLDERVYRVEKGIIRYDKIELVGKRPKYKIVFEINKEEKLTRIKQILEAIKDGLYAQSSGEANTLVPLFLIAGYVKVPSPVFHPYIEIEPVSGVKKCRVIGVNGCLKNSWIVDKVFLMDCERMQVERKEELIFNKNNLGKFEVTENWDEFLKVLDDEYTTSSPSIGE
>NC_009437.1|WP_011915930.1|360007_360493_-|ATP-binding-protein
MNDLLLGKLKDLKLSGIIKSFDLRVEEAIKNNFSYQEFFEISINDEVSNRRINSNQKRISKAKFPWHKTLEEYNFNYQPSINKRFIYNLATCEFVRKRENVTFIGPPGTGKTHLAIAIGLKAVALGYRVLFTTANEMLEELYISRADNSYQQKLKTMLARK
>NC_009437.1|WP_011915933.1|362589_362862_+|Veg-family-protein
MVDKLHLQQIKKDIEALKGEKVLVRANKGRKKMIEVEGILENTYSNIFVVKFPIDRECKQFRCVTYTYSDLITNTVEIILCRTNTKVNVM
>NC_009437.1|WP_011915934.1|363054_364590_+|DUF3794-domain-containing-protein
MDKRYEKIEYMNVYGSDSQKVIVEGEILLPEIKPDVLKVLQTDADVFITSVEVLNDRVVVQGEVDFRIIYLSNDPLKKISFVSSCAEFSKVFDMLGVRPGMAYEVKDDLIYSYCSALSQRKLSAKAIVEICLLVKSSTSIEYLDHIEDESLRFLKERITISNPLTFTEQITKKEILEIPQGKSSIREILRSFARLSDKNIKFDRKKLAIDLKIDIKTLYSPDIGQNPLETVEHEMFAEHFVELSNIPDDLEPIVKFYIKSFKVSPKTDEVGELRRIEYDIVVEAEIAFNQLETIEPIVDVYSTMHELKESKKFLNIEQFVGKTRQVHTIKEVVVLPSEPEQIFSLSGRVEIDMVKAEKNAAQVKGVLVVFLIYISKDEQDIIKSATTQIPFSIKIDLDGTEEQDKVYDDIDIENLSFSILSANEVEIRAHLVAELWAKRSVNVEIISDVQMLEKIEKEEERLASMYIYTVQKGDTLWKIAKKYKTTVEKLMSFNQLENAEIFPGQKLLIVR
>NC_009437.1|WP_011915935.1|364645_366013_-|UDP-N-acetylmuramate--L-alanine-ligase
MNKFFLIGIGGISMSAIALILKNHGHIVEGSDMQESITTRMLREKGINVYIGHDENHIKGDEIVIFTAAIPKDNPELVKAKRLGLKVYERAEFLGMLMKDYKNVIAVSGTHGKTTTTSMIGYILKKALLNPTVLVGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFIVANLDDENVYSVASYLKQNVIYFSTKTKADFWADNITSCNGYYEFDVVNKDFKHLCHIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRLEKLGKIDGIVLYDDYAHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKSLSLADKVIVTDVYAAREKNVYGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIGAGDVNKCIELILDKSPVKS
>NC_009437.1|WP_011915936.1|366215_367034_+|pur-operon-repressor
MEKAGKAERLIYITNILTQNPMKIFSLSFFCEKLNCAKSTLSEDIDLISKVFVETGQGRLETISGAAGGVYYIPVMKKEDEIEFLNFLKNELQNPERIVSGGFVYINDIVFSPEIIKKAAKIFLRLFLEKEIDYIATVEAKGIALASYVAQYFNKPLVVARSGSKFTEGSTVNISYISGTTGKIETMTMAKKAIKRGSRVLFIDDFMRGGGTVRGMRDLLSEFESTLVGVGVLIATKDKKSIDIDYKSLLILDTLDAENKKIEFSINNQVIS
>NC_009437.1|WP_011915937.1|367155_367422_+|septation-regulator-SpoVG
MQVTDVRIRKITNEGRMKAIVSVTFDNCFVVHDIKIIEGQNGLFIAMPSRKTPEGEFKDIAHPINQEMRDMVQKAVIEKYEAVISAGE
>NC_009437.1|WP_011915938.1|367480_369709_-|hypothetical-protein
MTKRLVAFAVIIMFISTFSTAIFATGIQNLPEKAHFSIEPKGNAVEILKGNQVVAKILPPELLNNTSTKKSKEIFTIDIPFIENGAIKWRIEKSEPSDISFLTEGKNKVLKLDFHTMNAFYKITSPYISLKDEYQSVMLSFDYKVDYQNLIHFKEEENVNVEIAIFGENKTKILSLPEKLKLTPGWGTFKTSFSLPIDARYITFEVSQNGKNVKTVQFRNFKIGFVKPSKYSFALKRVDKYNNLIEQVFENGFQKITRKVFVSSSEDVINVEEILKSKEDHQVFKEYSPVVFESKPLFILKRDYSISKFTSPMYVTDSLSDFYLKLYNCAMGYTNNYDSIETYNLKNKANVFLFFSNSDDIKYFLIGKNKEHIWTTTQLFKKGFEKSFTYSIFPADFGYAIKSRAPDGRKGILVFSNHADSNMISIIKAIMFGTTDTKDSSYMKKGFVGYKIPITWGFFYKSIKGIPGFDNPEYKKLIEFLAQKGIEVVLHTASPIAKENTPQLIEKALNATSYLKLDDWIDHSLSDGTRCGDLKSEGAIKTSKNYTFNLFLKHGYKYCWSYLDVKLDDLNMLEPNQVNKHPQIFFKNYNFGEGDSLYQWNSVRYRNLLSMLTKPRLEKFVNENGVCIIHDYFAHPMQKRKFFIVKNKNVYISRQLDNNLKLVAIFRDKKLLWVPTVKQFVNYKIALKNVIITPLDKSALLVDNKNGFDIKGFTLITILQNGQERRIVTTLVPGINIISLPQ
>NC_009437.1|WP_011915939.1|369798_370647_-|divergent-polysaccharide-deacetylase-family-protein
MKLRRYILIVIKKAKLSQYFIPLLAIFCFIVLTLVYIFYNPKPQAVETSAQSQAYVALIFEDAGMDEQEIQKLLEINLPFDVAIIPFLPFSNKIALMCSKNNKEVLMHLSMEPEDQNTVWLTPRSIMNNTPDDEVEKVFKDAMLNLPHSKGFSIHLGTLVCTNEKIVSHLVNLAKANNMIIVDSTSSPRSLFPKIGKQKGIDVIPHDVILDSKNELKPIQDKFKLLFNKAKKKGFAVGIGHLGQEGGLTTIEAFKEVLKDAQRENIKFVFVSDIAKLIKQTD
>NC_009437.1|WP_011915940.1|370718_372047_-|hypothetical-protein
MENANQFITKYIYLFAITSLVFPIFMMFSSFVMTKNPSNLFISFLIMNALFLLIPYLIKKRSTGLWEKILNILFIIIIPQGFALIVLKPYGILEMFIGQIFCMGLYVHSYFVYEKEEVSISLGAILAGLWAIIIVSGLSTFLNVPKNIINQYSTYSIIFLIASVYLLNRINLENLISRRYRRTNSISTSISFINLFLSLAFIVILLLLFKFKGFAPYVVAFIVETIKFIFKIIKKILEFLNSLFATTKPMSNSNNDIAELLKNMKPAKKSLISQILDVIGYLLALGILGFLIYKALGFIKIAIEEMIRNLLLFLAKVTNNIQMVERGQNYTDIKTFILAKKRPKAKPKQTKIKKINLKKISDLNLRLRIIFKLTMEYFYQKKNYNLKTSLTPLEMGRLIARGELVNNSIIEDLIDEYNKVRYHKKYSVISTEQFEEFVKNLK
>NC_009437.1|WP_011915941.1|372192_372624_+|nucleoside-deaminase
MYIYNVMKKLIDYVSSMEDIPIAAAVLRDGEIISIQKNDSKNAIFHAEILAILDAASKLSTKDLRGCEMVVTKEPCPMCMSAIVLSKIDRLYFGARDFKMGAAESCFKLSQDPNLNHKVEVIGGICEEECKALLKSFFEKRRI

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Crispr_ID: NC_009437_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_10

539665-541402

TypeIII

I-A

Consensus_repeat	Method
GTCTTATCTGAACTATGAGGGATGTAAAC	CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	CRISPRCasFinder

26 spacers

csa3,csx1,cas10,csm3gr7,csx19

The CRISPR arrays of NC_009437_10

>merge|NC_009437|10|539665-541402|CRT,PILER-CR,CRISPRCasFinder
CAAAGGTATATTGAGAGAGGGATGTAAACATTGTTTGGGTCCTCCGATTTAGAGCCGATTGAGCCGGTCTTATCTGAACTATGAGGGATGTAAACTTGCATAACTAGTGGGATCATTAATCGGCTCTATAATAGTCTTATCTGAACTATGAGGGATGTAAACGGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGGGTCTTATCTGAACTATGAGGGATGTAAACGTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAAGTCTTATCTGAACTATGAGGGATGTAAACCATGCCCAAAGAATTTATAAAGACATCAAAGAACAGTCTTATCTGAACTATGAGGGATGTAAACCTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCTGTCTTATCTGAACTATGAGGGATGTAAACTCAACAAGTATTACATAGCCAGCTTCTCTTATTTCTGTCTTATCTGAACTATGAGGGATGTAAACTCTATGATATAAACTCCATCTTCTTTAAGTCTCCATGTCTTATCTGAACTATGAGGGATGTAAACTTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTGGTCTTATCTGAACTATGAGGGATGTAAACAAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTTGTCTTATCTGAACTATGAGGGATGTAAACGAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATGGTCTTATCTGAACTATGAGGGATGTAAACTATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTTGTCTTATCTGAACTATGAGGGATGTAAACGAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAGGTCTTATCTGAACTATGAGGGATGTAAACATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCCGTCTTATCTGAACTATGAGGGATGTAAACGACTGGTATTAGTGACAATGACTATATTGGTAGTTCGTCTTATCTGAACTATGAGGGATGTAAACGTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTTGTCTTATCTGAACTATGAGGGATGTAAACAAGAGTCTATAAAATCAGATTTTCCAAACACTCCAGTCTTATCTGAACTATGAGGGATGTAAACTCTGACATGATTATTAATTACTCATGGTACGCTAAAGTCTTATCTGAACTATGAGGGATGTAAACATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTTGTCTTATCTGAACTATGAGGGATGTAAACATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGGGTCTTATCTGAACTATGAGGGATGTAAACTATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTAGTCTTATCTGAACTATGAGGGATGTAAACGTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTTGTCTTATCTGAACTATGAGGGATGTAAACGTCTAACACGTCTGCAACAGAACAGAGCTGAAACGCGTCTTATCTGAACTATGAGGGATGTAAACTGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTCGTCTTATCTGAACTATGAAGGATGTAAACTCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGGGTCTTATCTGAACTATGAGGGATGTAAACAAGGGGGTGTTGGAAAAACTACTATTGCACTTGCACGTTTTATCTAAACTATGAGGGATGTAAAC

>NC_009437|10|5|539665-541402|CRT
CAAAGGTATATTGAGAGAGGGATGTAAAC	ATTGTTTGGGTCCTCCGATTTAGAGCCGATTGAGCCG
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCATAACTAGTGGGATCATTAATCGGCTCTATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATGCCCAAAGAATTTATAAAGACATCAAAGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACAAGTATTACATAGCCAGCTTCTCTTATTTCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTATGATATAAACTCCATCTTCTTTAAGTCTCCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	GACTGGTATTAGTGACAATGACTATATTGGTAGTTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAGTCTATAAAATCAGATTTTCCAAACACTCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTGACATGATTATTAATTACTCATGGTACGCTAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTCTAACACGTCTGCAACAGAACAGAGCTGAAACGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTC
GTCTTATCTGAACTATGAAGGATGTAAAC	TCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGGGGGTGTTGGAAAAACTACTATTGCACTTGCAC
GTTTTATCTAAACTATGAGGGATGTAAAC

>NC_009437|10|9|539731-541402|PILER-CR
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCATAACTAGTGGGATCATTAATCGGCTCTATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATGCCCAAAGAATTTATAAAGACATCAAAGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACAAGTATTACATAGCCAGCTTCTCTTATTTCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTATGATATAAACTCCATCTTCTTTAAGTCTCCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	GACTGGTATTAGTGACAATGACTATATTGGTAGTTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAGTCTATAAAATCAGATTTTCCAAACACTCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTGACATGATTATTAATTACTCATGGTACGCTAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTCTAACACGTCTGCAACAGAACAGAGCTGAAACGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTC
GTCTTATCTGAACTATGAAGGATGTAAAC	TCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGGGGGTGTTGGAAAAACTACTATTGCACTTGCAC
GTTTTATCTAAACTATGAGGGATGTAAAC

>NC_009437|10|9|539731-541402|CRISPRCasFinder
GTCTTATCTGAACTATGAGGGATGTAAAC	TTGCATAACTAGTGGGATCATTAATCGGCTCTATAATA
GTCTTATCTGAACTATGAGGGATGTAAAC	GGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGG
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAA
GTCTTATCTGAACTATGAGGGATGTAAAC	CATGCCCAAAGAATTTATAAAGACATCAAAGAACA
GTCTTATCTGAACTATGAGGGATGTAAAC	CTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCAACAAGTATTACATAGCCAGCTTCTCTTATTTCT
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTATGATATAAACTCCATCTTCTTTAAGTCTCCAT
GTCTTATCTGAACTATGAGGGATGTAAAC	TTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAG
GTCTTATCTGAACTATGAGGGATGTAAAC	ATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCC
GTCTTATCTGAACTATGAGGGATGTAAAC	GACTGGTATTAGTGACAATGACTATATTGGTAGTTC
GTCTTATCTGAACTATGAGGGATGTAAAC	GTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGAGTCTATAAAATCAGATTTTCCAAACACTCCA
GTCTTATCTGAACTATGAGGGATGTAAAC	TCTGACATGATTATTAATTACTCATGGTACGCTAAA
GTCTTATCTGAACTATGAGGGATGTAAAC	ATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTT
GTCTTATCTGAACTATGAGGGATGTAAAC	ATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGG
GTCTTATCTGAACTATGAGGGATGTAAAC	TATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTA
GTCTTATCTGAACTATGAGGGATGTAAAC	GTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTT
GTCTTATCTGAACTATGAGGGATGTAAAC	GTCTAACACGTCTGCAACAGAACAGAGCTGAAACGC
GTCTTATCTGAACTATGAGGGATGTAAAC	TGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTC
GTCTTATCTGAACTATGAAGGATGTAAAC	TCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGG
GTCTTATCTGAACTATGAGGGATGTAAAC	AAGGGGGTGTTGGAAAAACTACTATTGCACTTGCAC
GTTTTATCTAAACTATGAGGGATGTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011916064.1\|533051_535424_+\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319847
NC_009437.1\|WP_187147313.1\|526866_527169_+\|amidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|378910
NC_009437.1\|WP_011915667.1\|525832_526780_-\|ISNCY-like-element-ISCsa7-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009437.1\|WP_083755760.1\|528669_530076_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_009437.1\|WP_083755729.1\|525318_525801_+\|amidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|378910
NC_009437.1\|WP_011916069.1\|544061_545594_+\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|274209
NC_009437.1\|WP_011916077.1\|556587_558009_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_009437.1\|WP_004103231.1\|535510_535975_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|173247
NC_009437.1\|WP_011915673.1\|537424_538654_-\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011916072.1\|549262_549856_+\|TIGR03984-family-CRISPR-associated-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NC_009437.1\|WP_041722719.1\|554679_555741_+\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	unknown	unknown	gnl\|CDD\|180835
NC_009437.1\|WP_011916073.1\|549856_551875_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_009437.1\|WP_041722711.1\|527474_528023_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_041722460.1\|545593_547831_+\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|131722
NC_009437.1\|WP_011916068.1\|542706_544062_+\|hypothetical-protein	csx1	mkCas0112_csx1_CAS-III	gnl\|CDD\|312526
NC_009437.1\|WP_011916078.1\|558217_558868_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_148203703.1\|541705_542176_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320684
NC_009437.1\|WP_011916063.1\|532663_533038_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_009437.1\|WP_011916057.1\|524456_525323_+\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011916076.1\|555847_556543_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011916073.1\|549856_551875_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.63762e-135
NC_009437.1\|WP_187147313.1\|526866_527169_+\|amidase-domain-containing-protein	gnl\|CDD\|378910	pfam12671, Amidase_6, Putative amidase domain.	1.02789e-07
NC_009437.1\|WP_011915667.1\|525832_526780_-\|ISNCY-like-element-ISCsa7-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.76429e-13
NC_009437.1\|WP_083755760.1\|528669_530076_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.98901e-28
NC_009437.1\|WP_083755729.1\|525318_525801_+\|amidase-domain-containing-protein	gnl\|CDD\|378910	pfam12671, Amidase_6, Putative amidase domain.	0.00215027
NC_009437.1\|WP_011916069.1\|544061_545594_+\|hypothetical-protein	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	0.000204405
NC_009437.1\|WP_011916077.1\|556587_558009_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.73612e-50
NC_009437.1\|WP_004103231.1\|535510_535975_+\|signal-peptidase-II	gnl\|CDD\|173247	PRK14786, PRK14786, lipoprotein signal peptidase; Provisional.	2.31736e-50
NC_009437.1\|WP_011915673.1\|537424_538654_-\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011916072.1\|549262_549856_+\|TIGR03984-family-CRISPR-associated-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	2.11116e-59
NC_009437.1\|WP_041722719.1\|554679_555741_+\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	gnl\|CDD\|180835	PRK07094, PRK07094, biotin synthase; Provisional.	0
NC_009437.1\|WP_041722460.1\|545593_547831_+\|hypothetical-protein	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	2.89662e-19
NC_009437.1\|WP_011916068.1\|542706_544062_+\|hypothetical-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	0.00364536
NC_009437.1\|WP_011916064.1\|533051_535424_+\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_009437.1\|WP_011916063.1\|532663_533038_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	8.03033e-23
NC_009437.1\|WP_148203703.1\|541705_542176_+\|M48-family-metalloprotease	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.66067e-34

>NC_009437.1|WP_011915673.1|537424_538654_-|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_004103231.1|535510_535975_+|signal-peptidase-II
MFYIFIITILTGIDQWTKYLIETQLKPIGAIPIVKDIFHLTYARNTGAAFSILRDKQAFLILVTTIVVGALIYYLIKILKTGEVAFKLSLAIIIGGALGNLIDRVRLNYVTDFLDFTLINYPIFNLADVFVVSGVVMLSYMLLFKGDMPKISKM
>NC_009437.1|WP_011916064.1|533051_535424_+|cadmium-translocating-P-type-ATPase
MLKKEVILEGLDCANCAAKIEEEVNKLNGVKAYMNFMNKTLTLEIESEQEYKNILQQVKTIVHKHEPDVVVKEKSVNKSNKKVNKSIVILEGLGCANCAAKIEKEISGLEGVEFAAVDFVSKKLTLEISPKVNRSELNEKIEAIVKKIEPDVKVIFEENTSKANVKENNEEEEEGVNKKEIIRLVVGGAIFAVGIIFNFQNWLELTLFIISYIIVGGEVVLRAIKGIARGQVFSEHFLMSIATIGAFFIGEYPEGVAVMLFYLVGELFQDIAVGHSRKSISALMDIRPDYANLKVGDEIRKVSPEEVNIGDIIIVKPGEKVPLDGKVIEGNSMVDTAALTGESVPREVGPGDDVLSGFINKNGVLTIEVTKDYGDSTVSKILDLVQNASSRKAPTEKFITKFARFYTPIVVFGALALAIIPPLVIPGATFSTWIYRALVFLVISCPCALVISIPLGFFGGIGGASKRGILVKGSNYLDALNNVETVVFDKTGTLTKGVFEVVSINPQSDFTKEELIEYAAYAESHSSHPIALSILKAYNKDVDITKIEDYEEIAGHGIRAKVGGKEILVGNSKLMNKENIKYQEVETLGTVVHVAVDKKYAGNIVISDAVKEDSADAIKGLKALGVRNIVMLTGDSKAVGEKIATQLGIDEVYTELLPADKVEKIEALEAKKSHKGKIVFVGDGINDAPVLARADIGVAMGGLGSDAAIEAADIVIMTDEPSKIVTAIKIAKRTRKIVMQNIVFSLGVKAIFLALGAVGVATMWEAVFADMGVAIIAILNAMRVMNTKSI
>NC_009437.1|WP_011916063.1|532663_533038_+|helix-turn-helix-transcriptional-regulator
MAKKIQPIERCDCDVIHEEIVNKVREKMPQEETLYDLAELFKVFGDSTRIKILWALGESEMCVCDIAFLLNMTQSAISHQLRVLKQAGLVKSRREGKIVFYSLEDEHVKQIFDQGLIHISEESK
>NC_009437.1|WP_083755760.1|528669_530076_+|IS21-family-transposase
MHTTIYTLFKQGYNKSQIARLLNVDRKTVRKVIQDIEQKGEVERKSKNSVLDNYRQFIEAKVNKGLSAKKIYQTLQAEFGFEGSYSNVRRYVQKIKQKIANSKVYMVLTTLPAEEAQVDFGYIGKIKVDGKFKKAWVFTMVLSYSRYMYAEIVFDQTVETFIQCHKNAFKYFGGVVEVVKIDNLKAGVLNVDFYEAQIQKDYASFASHYGFLPQPCRVYTPTDKGKVESTVKYIKQNCFSGEEFKDIDEAREHLKNWLDDVANVRVHGTTKKVPKEVFLLEEKEKLIALPIEEYHISKSSIHKVTTNCHLIYKGNYYSVPYEYAGYEVEVVEMGKYVTNKEHYPSSKNITTEDILSRQRDKISEIGNWALKFFEEFIKQEGFKKYDYRSISGIIALKERYGAEAVDNACKRALKFGGLSYKVVKNICEKGISDLPEYEDESYINEEITELYRDIREYDKLLKIGELQR
>NC_009437.1|WP_041722711.1|527474_528023_+|hypothetical-protein
MNDSENETIKDALKKAIIDTYSIIKGNTEILKIKKYAQGYLVLVLRQGESGGIAIYYVEEKEGRNFIANGVAGGDAAMSMGFGVNRLVLGNDTIFFCNLNDSTWIPENDTRKETNYARIVFDFDDGNTIEEKVENDKGYILIYNGVVNVKDMKLYNADNELVNVYKDVGATKEVDYRLLNSQ
>NC_009437.1|WP_187147313.1|526866_527169_+|amidase-domain-containing-protein
MSFLLICFIQQANNAYYNNISPSSVLLGDVLQFYDYDISDYHHSVYVTYKPSSGVTWDNLLVCQHSSDVKNRPVIELINAFGGSSCKMRRMTFSSASFSS
>NC_009437.1|WP_011915667.1|525832_526780_-|ISNCY-like-element-ISCsa7-family-transposase
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEYIEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYDCAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQKIENCKFSFKYTWNNL
>NC_009437.1|WP_083755729.1|525318_525801_+|amidase-domain-containing-protein
MSTEDGWDYVTTDAGDEFTGSYDSGVWSSWKQGSSIKVTLNTDSSVTDWGFKIDRIDYRYFYNTELTSPGTWDCTNFVSQCIWAAYGGYVSGNDTQTRTNISNKVRMVNGTYTTGWFGGTGGGSGPWENVGSLWTFATNSSKTYGPNATGINNNAYQVVE
>NC_009437.1|WP_011916057.1|524456_525323_+|hypothetical-protein
MKKIISVLVSIALIFSLSGFALAEKNNAVIKPVSSLNEEEKAVKSTIEQFLNRSFQSFVSLEEGNINDITEDNDSTYTYKMFNKQQIELYKEFGISYQWFKLNPCYRSISIKNNQADVKLILDVNYQLTGVDVESGMYGINFDFVLNNKNGIWTISKIDSDYDLFNKFKENIKNEAKQLISGSSIKEAVNKAYQKKIDDFQTMKVQISDAKTEKISKEPSSDVIITATYPYNSSNGVAYATRFVGGDSTSVGDSYTLESAHPYTNNYTNTWTISKTGAVSIRVHFLKN
>NC_009437.1|WP_148203703.1|541705_542176_+|M48-family-metalloprotease
MRFIGRDFVVVYSGILELAYKGSLDEVKFILAHELGHLKANHLKHRLIQFGLMLPFLGQACLRACEYTADRYGAYFSLNGALKGLILLAAGKELYRNVVLEEFLKQAEEERSFWISFAELLASHPHLTSRIQAIKDFVKTLKPSNSLSEVYNFESV
>NC_009437.1|WP_011916068.1|542706_544062_+|hypothetical-protein
MNSNKILFITVGTNPLPAYVVAKYFKDSFNNVVLISSEENRNIYQAGTRAYAEKIRDTLETNVEKYHIISLSNVANPAEIKRDLKKRLESNDILFSKDDIQKVHLNYTGGTKIMAVAVYNFLKEEYGDKFESSYLDARSYKLILEDGTVEPTFEDLREKVKIDIETLLKLHLYEVKRIESDEKYKKAFGEKYYSEIISEIEKIVNDDDKRGKYLEWTNKYFRKVFRYKDESNKEKLITTPTKLSEHLNKEENKKLIEDFESLTPEFIWDLLDKFPDGKKIITQRGKLWVPYRDSTKNKIEDTIKFLDGEWLELYVYNQIKDQLIKKGLLQKGNFGRSIIAVKSKEDGKEFEMDIFIIYGYQLIGISITTSTERHICKSKGFEVIHRARQIGGDESRAILVTGYKDPENPKSPKDLEEDLSYETGASTGKIIVFGPEDWKDIGQKILREVFS
>NC_009437.1|WP_011916069.1|544061_545594_+|hypothetical-protein
MGKSVCAVLIDTVSIQEYIFSSNKLKENMGASYIVDNIFKEHLKSTLQKIFSIQNLNINEWKEKPGVYTIFHPDVKFEIGYIGGGNALILFKAKEKIKEFIEIFSKTLLEIAPGLKTAYSISEEFDLDEFSKSLKKLRDNLIRNKNRFFPITTIAKYGFTADCPHTDGAADFLEKDSKFISGESMAKLNMAETARNNFRDTYISKEFTNKYTFTYNIDDLTTKKGLLNYIAIVHIDGNKMGEKSGRCGSLKEIRLFSKEVEESSSEAFKKMISELIDKIEEGVVSEKSGFYLKKTLEDGKEKVILPVIPIIRAGDEVTFISDGRLGIWLAEVYLKDYINKKVLGEKLSACAGVGIFKSKYPFYRAYILTEEVLKRAKKASRGKENSSYLDFFISSRGVSGDLENILKKYFKGEEGDLHYGPYRVDNDKECNSVKNLKNIIKEFKRYPKNKLMKLREVLFEKKEMGEMFLEELKASKQIKLNNLPKSLWDNNQTPYFDAIELVDFYPEGLL
>NC_009437.1|WP_041722460.1|545593_547831_+|hypothetical-protein
MEVKVKTLSYSLFASGEGDGLIDSDVVYDSFGIPYIPAKRVKGCLKESALEVCEMLGISSQIVYSVFGNEGLEGKIYINNLYINNYEDLKNEIKVLKKEKEFSLYLHPQKVLSHFTAVRYQTAINEDGVAKENSLRTIRVLKPDIEFKGDIYEIKTLSRREKALLYLAVINLKRMGTSRNRGFGEVRCILENSGFENSQEAIDVLLTSEVTKASKNDNKTSSILFDPKLTGENARIKFTVKTLSPVVIAQPRGEQNTVYTKKYIPASVIRGLLAKRLVEILKLGRDAQRNEHFYTLFLSDKTKIGNAYPKKEGYVFYQTPLFIQEEKGSNSATLYNVFDKYEETEMPNNTKPLNKFCYIDDENVYIYEPETTFYFHNNRDREKGHSIGEGIFYYEAINSGEEFEGEIVGDRGYLEELKQKFDDFTAFIGRSKTAQYGLVKFCFGDIEGLNSNEINDTEFIMYAISPIILYNEYGFTQPSENILIDYLANLLECEKEEIEIVDSAARIEKIENFITIWKLKTPSLFAYSAGSSFKVKLKTIDDRIIRNLGKIEAEGIGEEKSLGFGKVKILHDIQEVMVRKKVPEKEDRNSTDIKQSRDILLEIIIRDLLTVVNYLGYRKAEDFKGTLKNWKLISNHLINRLYNMLTESNNFSEWKIKIENLDGKKAGELLKKLGLIEELTNKEMIKEMLSKQDVNKFGRILSKLGVNIMKDSSLKWDIFKNYWLNFLRYLRLFKKQEEYKDEQNC
>NC_009437.1|WP_011916072.1|549262_549856_+|TIGR03984-family-CRISPR-associated-protein
MKKVYEIKETFSKIEKWDEVKPSDIEKRILENLKNGYMVCWLCNEVLFGRVREGKIEFYHELQSDFPKYLLRIRAFNSQKEIHIWKSQGQFKGRIREDKDIEAGDGETLKKVEYIEAHQIMYGNGKNVRKINEEFYEIYDSRGIKYILPSELIRENILSKDSYFVLVTRNYIDYNEIGQAGFIDSRFVKIEHKEGES
>NC_009437.1|WP_011916073.1|549856_551875_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MSDKKSDKRAKAPYNFVPLNKSLVLVYNNKDEIPSFDKYHQERFSGYIELDIETKTPIFIRGEGSQFFKINNKPFIPGSSLRGMIRTLLEIVSFGKFSFCDIGRKLFYRAVGDLSSLGKEYRSLFTNQQDCYSYKFRAGILKRENGIYKIYPSKEIEGTQIFRVEETTIKYSDLPEELKNSPPYSFFEIYFEPSPLEYHTHYREDKKKNKRVPYKLKYAKVERISANKEGENMERGYLIITGDVGDKKHMQWIISEPMNISIPIDEKVIEEYRNDNDREEKYNVLEKLEEKKEVPIFYLTNENDRVVSIGHTGFFRIPYKYTIGDHIPENLKSADGIDFAEALFGKEGEFASRVFFEDAELAEKNNEEDIFFPEAVPQILSSPKPTCFQHYLEQDSFNNKKLKHWNDKKAKIRGYKLYWHRVTPDDESKCSWKLKQFKINKSNYEKFLNNINKNNSTLLNKKHNCIEISDKDITIKCAFNELPKDIQEELKNYLLQSSKAQHTVIQPVKSGIKFKGRIRFENLSKEELGALLFALDLPEGHYHKIGMGKPLGLGSIAIKPTLFIIDRSKRYKKLFEDDKWYLAAEKREDINEFKKAFEEYILCRISESERGKATSLWEIPRIKELKEMLNWRHTEKSDWLEKTRYMLINHPTLKNEFKDRPVLPKPTEVVDS
>NC_009437.1|WP_041722719.1|554679_555741_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE
MKVKEILDKAYNEHHLTKDEIKFLLNSEGEEKELLFEYADRVRKEYVGDDVYLRGLIEFSSYCKNDCFYCGLRRSNKEAQRYRMQEDEIVEVAKRAYDMGYRTVVLQSGEDPYYTKDKVCSIIKKIKEEVDVAITLSIGERSYEEYKAFREAGADRYLMRFETSNRELYQKYHPGMSFENRIECLRWIKSLGYELGTGFLIGLPGQTIDDLANDILLVYELDSDMIGIGPFIPHPHTPLKDAEAGSVDLTLKCISILRLLMPDSNIPATTALGTLDPLGRQKGLKCGANIVMPNVNDLKYKLKYELYPGKICINEDATKCRGCIESIIISLGRKVGQGFGQSRHYELKKAVYN
>NC_009437.1|WP_011916076.1|555847_556543_+|hypothetical-protein
MRIKKNSTNKKWLLGFIIGIVSGLVIGIAAGYYISSHNIAKKQPVSTTTSSQQQVQSGGSSTSGSNLPQTSNSQQNTQREEGSTRTQKPKTYKAYGRFVGGTDAHSIEVNLLNTNFDYKIFETHTADNQKYNLQPGMILELEFEVPQSGGNPKIINMSIPESVTLKGKYIGLADNNFAEFLFDQKHVVLQITAVSSKISYLDENTDVEVTFKTNPQDPNSNPIVTDIKVLK
>NC_009437.1|WP_011916077.1|556587_558009_-|MFS-transporter
MERTDEQKINKNILIATTTSSFLVPFMSSAINIAAPDIAKKFNLVAENLNLVITIFLLFSAAFILPMGKLSDTFDRTKIFITGLISFTISTLMCAIAPNITVLFIFRALQGFFSAFVFVTSIAILIENHSPKIRGRLLGINTATVYLGTSIGPFLGGILVRLFGFRSIFLFAFLVGFVASFISLFLLKKEIKVQQHTSLAESLKNLDKIGTIFSIVGLFLLIYGASTFELGKTPKMLFFLGGVLLILFVGFELATQNPLLDVKLFVKIPQFGFSNLAALINYSCTFSASYLLSLYLQIVKALPAQVVGSILILQPISQVITSLISGRASEKIEPRKLATAGMVLTTAGLFIFSLFSSKTNIVLVIVNLIIMGIGFGLFSSPNTNVVMSSVPQSLYGAASSTISVMRVMGQAFSMAIVSFIFSLYLKGAKLSHENYLMILKSMKISFFVFSVLSIVGIVASIKRGNIYNQENSN
>NC_009437.1|WP_011916078.1|558217_558868_+|hypothetical-protein
MKVAWSATHQEFLLSDGYYFSGLYKELTKRGVLIEEVDDFDRLFEYDVIIFNYPENPFSVEEKKRIQKVLNEEKKKIIFTAHFRGKDGVFDVCNAITQDFGITVLPEGVKDECCHLEDDSLIITTDNIKKYASNVKEVVFPYSAPLSLSDGVEVILKGRDTAVSDSGEKAPILIAQKSFESGSKLIVCGGCIFWDNFSLFRLDNLQFVVNLILGNE

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Crispr_ID: NC_009437_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_11

2513322-2520034

Unclear

I-A

Consensus_repeat	Method
GTTTACATCCCTCATAGTTCAGATAAGAC	CRISPRCasFinder
GTTTACATCCCTCATAGTTCAGATAAGAC	CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR

102 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_009437_11

>merge|NC_009437|11|2513322-2520034|CRISPRCasFinder,CRT,PILER-CR
GTTTACATCCCTCATAGTTCAGATAAGACTAAAGTTATTAATCCTCTTTCAGCCCACTTGTCGTAGTTTACATCCCTCATAGTTCAGATAAGACTTGTTCCATTTCTTTGACAATCCGCTTGAATTCTTTTTGTTTACATCCCTCATAGTTCAGATAAGACGAAGGAGCTTATACAATACAGCGAGGATATCTTAGCGTTTACATCCCTCATAGTTCAGATAAGACCAAGGGCAAAGATTGCAATACCCAGACAGGGAAAGAGTTTACATCCCTCATAGTTCAGATAAGACGAACTGAAGAGTTCCCTTTTGTTTTTGATGAAGCAAGTTTACATCCCTCATAGTTCAGATAAGACTCTTGAATCTGAGATTGTGATAGTAACAAATCAGGAGTTTACATCCCTCATAGTTCAGATAAGACAAGTAATGATAAATGTTGTCTTTAAGCACCTTTAACGTTTACATCCCTCATAGTTCAGATAAGACGAGATTGCAGAACTTAAAGCAATGATGACAAAGCAAAGTTTACATCCCTCATAGTTCAGATAAGACAGACGGAGGTTGTATCCTGTCCGTCGGATACCCTTCGTTTACATCCCTCATAGTTCAGATAAGACCAACGCCCTTCCTCACATGCCTTATAATATCTTTTAGTTTACATCCCTCATAGTTCAGATAAGACTTTGATTTGATGTTGAAATAGTTGAACATTTTTAAGGTTTACATCCCTCATAGTTCAGATAAGACTGCAGAGCAGCAACTAAGTTTTGATTTTCAAGAAAAGTTTACATCCCTCATAGTTCAGATAAGACCTGCTGCTGCTCCATCCTCGAATGTTGTAATTGCAAGTTTACATCCCTCATAGTTCAGATAAGACTTTCTTTGCTGACTAATAATTTGTATTTACTTGAAGTGTTTACATCCCTCATAGTTCAGATAAGACTATGCAGCCTCTTGCATAGCTGCATCCATCAACTTGTTTACATCCCTCATAGTTCAGATAAGACGAATTACAAACTCTATTGCTTTTGAAGGAACTTACGAGTTTACATCCCTCATAGTTCAGATAAGACTTCCATTTCTTTGACAATCCGCTTGAATCCTTTTTGTTTACATCCCTCATAGTTCAGATAAGACTTCAACAAGCATTTCAATAATTAATTCATTCACGGCGTTTACATCCCTCATAGTTCAGATAAGACTCGCTGTGTAATGCGTATCTCAAAGCATCCATGCAGGTTTACATCCCTCATAGTTCAGATAAGACGTAGATTGGATAATCAATGAAGGTGTGGAATATCCGGTTTACATCCCTCATAGTTCAGATAAGACCAAAACTGCAATTGACACACTTAATGACATTGCAAAAAGTTTACATCCCTCATAGTTCAGATAAGACCAGCAGTGAATAAATCTCCGCCTGCTCTTTATCATCCTGGTTTACATCCCTCATAGTTCAGATAAGACAGGTAAAGCTGTCTTCACCAAGATATTGCTCGATAATGTTTACATCCCTCATAGTTCAGATAAGACTTGATGAGAAAGTGCATGTGGTTAGTACACTACCAGAGGTTTACATCCCTCATAGTTCAGATAAGACTAAGTTGCGAGGAACGTTCGTCTGCAGGGTATATGAGTTTACATCCCTCATAGTTCAGATAAGACCTGCTACCGAAATCGCCAAGTTTTGCTGTTGCAGCTGTTTACATCCCTCATAGTTCAGATAAGACACCAGAGTACATTGAGTTTATCAAGAAGACATACACGTTTACATCCCTCATAGTTCAGATAAGACCTGGCTAAATTGAGCATGTTAGATAGCAATATCTACGTTTACATCCCTCATAGTTCAGATAAGACCCTTCGGGCTGCGGAACGCTAAGCTTGCTTCTTGCCGAGTTTACATCCCTCATAGTTCAGATAAGACATCAGAGAACTACATATAGAGAAATCGACCTTTTATGTTTACATCCCTCATAGTTCAGATAAGACGTGTGTTGGCATTGAAATGAACTGGGAAGATTACAGAAGTTTACATCCCTCATAGTTCAGATAAGACGAACGAAGAAAAAATTGAAATATCTTTCTTGCGTGAGTTTACATCCCTCATAGTTCAGATAAGACCCCAGCACCGGGCTGCCCAGAAAGCTAAGATGTGAGGGGTTTACATCCCTCATAGTTCAGATAAGACCCACTGCACCGTTTACTTGGGTATCGAACAATTTAAATGTTTACATCCCTCATAGTTCAGATAAGACACTCCACATGACTATCATCCCACGAAACAAAACACGGTTTACATCCCTCATAGTTCAGATAAGACTGTGCCGTCTGGCATCGCATATACACATATAAGATCAGTTTACATCCCTCATAGTTCAGATAAGACGGATAGTAGTCACACAAGAGCTTGGGCGACAGTTTGAACGTTTACATCCCTCATAGTTCAGATAAGACAAAAGTGAAGCTGTAGCGTTTTTGATGAAACATTTTAGTTTACATCCCTCATAGTTCAGATAAGACTTTGGAACATGATAAAGAGCATCATTACAACAACAGTTTACATCCCTCATAGTTCAGATAAGACCGATGATAACGTTCAGCAAGAAGCAGAAGGAGTTTGCAGTTTACATCCCTCATAGTTCAGATAAGACTGACCCAAGCAGAGTAACTACCCCCATTCATCTTATGTTTACATCCCTCATAGTTCAGATAAGACATATTTCAATATGTCCTGTTCCGTCCAAAATCCCAGGTTTACATCCCTCATAGTTCAGATAAGACTGGTAATGCTGAAGAGTTTTTAAACAAATCACTCAGTTTACATCCCTCATAGTTCAGATAAGACGTATACAACGAGGACTGAAACATATTATAAAGAAGAGTTTACATCCCTCATAGTTCAGATAAGACCTATCCTGTGGAGTCGAGCTTTGGCTTGTTCGTAATGTTTACATCCCTCATAGTTCAGATAAGACTTTCCTTGAGCTTTTGAAAGAGTTCTTTTTTGCTTTCGTTTACATCCCTCATAGTTCAGATAAGACCCATGATTTTCTTTGCTATCTCTTCTTTCTTTTGTAGTTTACATCCCTCATAGTTCAGATAAGACTTAGTGAATATTACCAAGCAATACTTATAACAAAGTAGTTTACATCCCTCATAGTTCAGATAAGACGTTAAGTGTTCAACAAATAATTTACAAAACGTTAGAGTTTACATCCCTCATAGTTCAGATAAGACCTTGCATTGATTTGAAAATACCCAGAAAAATCCAAGTTTACATCCCTCATAGTTCAGATAAGACTACTTTTGTAGCGTTAAAACTAACCATCAAGTTTTGTTTACATCCCTCATAGTTCAGATAAGACCAACCTTGAGATAGTTTTTCATCTCGCTAAGAGTTACGTTTACATCCCTCATAGTTCAGATAAGACCAAATAGGGAACTCTGGGATACTCTTGCTACTTCAATGTTTACATCCCTCATAGTTCAGATAAGACCTAAAGCTAAAAGCATTTGTGAATATTTAACCAAATCTGTTTACATCCCTCATAGTTCAGATAAGACTAATTTTGAACTGGCACAAAAGGTTAAGCACATTAGTTTACATCCCTCATAGTTCAGATAAGACCGGCACAGCGTATGTTGTCAAAGAGTATTATCACGAGTTTACATCCCTCATAGTTCAGATAAGACAATCCATAGTCAGCAAGCTGTGTTATTGTTCTTGTTGTTTACATCCCTCATAGTTCAGATAAGACAATCAGAGAACTACATATAGAGAAATCGACCTTTTATGTTTACATCCCTCATAGTTCAGATAAGACCCAGCGGTATGTATCCAAGCACATCTTGGGTCTGTGGTGTTTACATCCCTCATAGTTCAGATAAGACAGCAAGATAAAATCTGAATAAATAATTACTACGATAGTTTACATCCCTCATAGTTCAGATAAGACATATGAGGCTTGTGGTTGATATCGCTAAGCGTTATAAGTTTACATCCCTCATAGTTCAGATAAGACCAATAGCTGGTTATCAATATACAGTTGGTGGTGTAAGTTTACATCCCTCATAGTTCAGATAAGACTTGCTCTTTTTTCTTTCTCTCTATCTCTTCAAGTTTGTTTACATCCCTCATAGTTCAGATAAGACTGATGCCAGCTAATATGATGCCGTTGGCAACAATGAAGTTTACATCCCTCATAGTTCAGATAAGACGCGCCGTGCTTGCTATTGTGTCCCAAGTGTTTTGCGTTTACATCCCTCATAGTTCAGATAAGACGGTCTGCTTTTATTCCGGCGTTGCCCAAGATAGCCAGTTTACATCCCTCATAGTTCAGATAAGACCGTCGGTAATCTGTATGCCTAGTTGCTTCAACATTTGTTTACATCCCTCATAGTTCAGATAAGACCGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATGGTTTACATCCCTCATAGTTCAGATAAGACTGGTTGTCCATTATCCTTGGTGCCAGTATCACCCATGTTTACATCCCTCATAGTTCAGATAAGACCAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAGGTTTACATCCCTCATAGTTCAGATAAGACTAAAAGGAGTGATTACTTTGGATTTGAACTATGAACGTTTACATCCCTCATAGTTCAGATAAGACACTATTGACAAGGTCAGAGAAATAGCGAATTACTTTGTTTACATCCCTCATAGTTCAGATAAGACTATGCCCCGATATAAAGGTGAGCCTACAAGTATGGTTTACATCCCTCATAGTTCAGATAAGACGCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCGGTTTACATCCCTCATAGTTCAGATAAGACCAACATATTCCCTACCGTTGTAAACAACCCTATCATCGTTTACATCCCTCATAGTTCAGATAAGACCATACCAGCAAGGTATTTGACAGGACAACTAATTTCAGTTTACATCCCTCATAGTTCAGATAAGACCTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGCGTTTACATCCCTCATAGTTCAGATAAGACCTTGAAAGAGAATTAAACAAAACAATAGACTACAAGTTTACATCCCTCATAGTTCAGATAAGACGATAAAGGCAATGAATGCAATGCTTGGTGGAAAAGGTTTACATCCCTCATAGTTCAGATAAGACTGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAATGTTTACATCCCTCATAGTTCAGATAAGACTCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTTGTTTACATCCCTCATAGTTCAGATAAGACTAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTATGTTTACATCCCTCATAGTTCAGATAAGACTTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAAGTTTACATCCCTCATAGTTCAGATAAGACAACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAAGTTTACATCCCTCATAGTTCAGATAAGACCACGGGTCAAATCTTAAGTTTTACAGATACAATATATGTTTACATCCCTCATAGTTCAGATAAGACTTTCACATCACTACCCATGAATTCGAAATCAAACTTGTTTACATCCCTCATAGTTCAGATAAGACGGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCTGTTTACATCCCTCATAGTTCAGATAAGACTTGCCTCCTCCAACGTCACCGGCTCCACCAGCGGGTTTACATCCCTCATAGTTCAGATAAGACCTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCCGTTTACATCCCTCATAGTTCAGATAAGACGAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGAGTTTACATCCCTCATAGTTCAGATAAGACTAACTGCCCATATAGTGCCAAATATTGCTAATCCTATGTTTACATCCCTCATAGTTCAGATAAGACCTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAACGTTTACATCCCTCATAGTTCAGATAAGACTGCGAAATAAATATGTCTCTGACGAGACATTGTCAACGTTTACATCCCTCATAGTTCAGATAAGACCAATACTAAAGGAAACTGCCTTTTGAACGTAGTAATGTTTACATCCCTCATAGTTCAGATAAGACTTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAAGTTTACATCCCTCATAGTTCAGATAAGACTATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCAGTTTACATCCCTCATAGTTCAGATAAGACTTGTAACAGGGCTCACAGATTTATATGCTGTGAGGATGTTTACATCCCTCATAGTTCAGATAAGACCAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGAGTTTACATCCCTCATAGTTCAGATAAGACTCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTTGTTTACATCCCTCATAGTTCAGATAAGACTGATAGATAGCTTAAAAATTAATGATAGCTTAAAATTGTTTACATCCCTCATAGTTCAGATAAGACGCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAAGTTTACATCCCTCATAGTTCAGATAAGACAGCTTTTTGGAACGACTAATCCAGATAGCCCTTATCATGTTTACATCCCTCTCTCAATATACCTTTG

>NC_009437|11|10|2513322-2519967|CRISPRCasFinder
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAAGTTATTAATCCTCTTTCAGCCCACTTGTCGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTTCCATTTCTTTGACAATCCGCTTGAATTCTTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GAAGGAGCTTATACAATACAGCGAGGATATCTTAGC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAGGGCAAAGATTGCAATACCCAGACAGGGAAAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	GAACTGAAGAGTTCCCTTTTGTTTTTGATGAAGCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTTGAATCTGAGATTGTGATAGTAACAAATCAGGA
GTTTACATCCCTCATAGTTCAGATAAGAC	AAGTAATGATAAATGTTGTCTTTAAGCACCTTTAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	GAGATTGCAGAACTTAAAGCAATGATGACAAAGCAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AGACGGAGGTTGTATCCTGTCCGTCGGATACCCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACGCCCTTCCTCACATGCCTTATAATATCTTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTGATTTGATGTTGAAATAGTTGAACATTTTTAAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCAGAGCAGCAACTAAGTTTTGATTTTCAAGAAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCTGCTGCTCCATCCTCGAATGTTGTAATTGCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCTTTGCTGACTAATAATTTGTATTTACTTGAAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	TATGCAGCCTCTTGCATAGCTGCATCCATCAACTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GAATTACAAACTCTATTGCTTTTGAAGGAACTTACGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTCCATTTCTTTGACAATCCGCTTGAATCCTTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTCAACAAGCATTTCAATAATTAATTCATTCACGGC
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGCTGTGTAATGCGTATCTCAAAGCATCCATGCAG
GTTTACATCCCTCATAGTTCAGATAAGAC	GTAGATTGGATAATCAATGAAGGTGTGGAATATCCG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAAACTGCAATTGACACACTTAATGACATTGCAAAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGCAGTGAATAAATCTCCGCCTGCTCTTTATCATCCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	AGGTAAAGCTGTCTTCACCAAGATATTGCTCGATAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGATGAGAAAGTGCATGTGGTTAGTACACTACCAGAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAGTTGCGAGGAACGTTCGTCTGCAGGGTATATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCTACCGAAATCGCCAAGTTTTGCTGTTGCAGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	ACCAGAGTACATTGAGTTTATCAAGAAGACATACAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGCTAAATTGAGCATGTTAGATAGCAATATCTAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CCTTCGGGCTGCGGAACGCTAAGCTTGCTTCTTGCCGA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATCAGAGAACTACATATAGAGAAATCGACCTTTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	GTGTGTTGGCATTGAAATGAACTGGGAAGATTACAGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GAACGAAGAAAAAATTGAAATATCTTTCTTGCGTGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CCCAGCACCGGGCTGCCCAGAAAGCTAAGATGTGAGGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CCACTGCACCGTTTACTTGGGTATCGAACAATTTAAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	ACTCCACATGACTATCATCCCACGAAACAAAACACG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGTGCCGTCTGGCATCGCATATACACATATAAGATCA
GTTTACATCCCTCATAGTTCAGATAAGAC	GGATAGTAGTCACACAAGAGCTTGGGCGACAGTTTGAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	AAAAGTGAAGCTGTAGCGTTTTTGATGAAACATTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTGGAACATGATAAAGAGCATCATTACAACAACA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGATGATAACGTTCAGCAAGAAGCAGAAGGAGTTTGCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TGACCCAAGCAGAGTAACTACCCCCATTCATCTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	ATATTTCAATATGTCCTGTTCCGTCCAAAATCCCAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGGTAATGCTGAAGAGTTTTTAAACAAATCACTCA
GTTTACATCCCTCATAGTTCAGATAAGAC	GTATACAACGAGGACTGAAACATATTATAAAGAAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTATCCTGTGGAGTCGAGCTTTGGCTTGTTCGTAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCCTTGAGCTTTTGAAAGAGTTCTTTTTTGCTTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CCATGATTTTCTTTGCTATCTCTTCTTTCTTTTGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTAGTGAATATTACCAAGCAATACTTATAACAAAGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	GTTAAGTGTTCAACAAATAATTTACAAAACGTTAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTGCATTGATTTGAAAATACCCAGAAAAATCCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TACTTTTGTAGCGTTAAAACTAACCATCAAGTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACCTTGAGATAGTTTTTCATCTCGCTAAGAGTTAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAATAGGGAACTCTGGGATACTCTTGCTACTTCAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CTAAAGCTAAAAGCATTTGTGAATATTTAACCAAATCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAATTTTGAACTGGCACAAAAGGTTAAGCACATTA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGGCACAGCGTATGTTGTCAAAGAGTATTATCACGA
GTTTACATCCCTCATAGTTCAGATAAGAC	AATCCATAGTCAGCAAGCTGTGTTATTGTTCTTGTT
GTTTACATCCCTCATAGTTCAGATAAGAC	AATCAGAGAACTACATATAGAGAAATCGACCTTTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CCAGCGGTATGTATCCAAGCACATCTTGGGTCTGTGGT
GTTTACATCCCTCATAGTTCAGATAAGAC	AGCAAGATAAAATCTGAATAAATAATTACTACGATA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATATGAGGCTTGTGGTTGATATCGCTAAGCGTTATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CAATAGCTGGTTATCAATATACAGTTGGTGGTGTAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGCTCTTTTTTCTTTCTCTCTATCTCTTCAAGTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGATGCCAGCTAATATGATGCCGTTGGCAACAATGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GCGCCGTGCTTGCTATTGTGTCCCAAGTGTTTTGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GGTCTGCTTTTATTCCGGCGTTGCCCAAGATAGCCA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGTCGGTAATCTGTATGCCTAGTTGCTTCAACATTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGGTTGTCCATTATCCTTGGTGCCAGTATCACCCAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAAAGGAGTGATTACTTTGGATTTGAACTATGAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	ACTATTGACAAGGTCAGAGAAATAGCGAATTACTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TATGCCCCGATATAAAGGTGAGCCTACAAGTATG
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACATATTCCCTACCGTTGTAAACAACCCTATCATC
GTTTACATCCCTCATAGTTCAGATAAGAC	CATACCAGCAAGGTATTTGACAGGACAACTAATTTCA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTGAAAGAGAATTAAACAAAACAATAGACTACAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GATAAAGGCAATGAATGCAATGCTTGGTGGAAAAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CACGGGTCAAATCTTAAGTTTTACAGATACAATATAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCACATCACTACCCATGAATTCGAAATCAAACTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGCCTCCTCCAACGTCACCGGCTCCACCAGCGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCC
GTTTACATCCCTCATAGTTCAGATAAGAC	GAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACTGCCCATATAGTGCCAAATATTGCTAATCCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCGAAATAAATATGTCTCTGACGAGACATTGTCAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAATACTAAAGGAAACTGCCTTTTGAACGTAGTAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAACAGGGCTCACAGATTTATATGCTGTGAGGAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGATAGATAGCTTAAAAATTAATGATAGCTTAAAATT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAA
GTTTACATCCCTCATAGTTCAGATAAGAC

>NC_009437|11|6|2513322-2520034|CRT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAAGTTATTAATCCTCTTTCAGCCCACTTGTCGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTTCCATTTCTTTGACAATCCGCTTGAATTCTTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GAAGGAGCTTATACAATACAGCGAGGATATCTTAGC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAGGGCAAAGATTGCAATACCCAGACAGGGAAAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	GAACTGAAGAGTTCCCTTTTGTTTTTGATGAAGCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTTGAATCTGAGATTGTGATAGTAACAAATCAGGA
GTTTACATCCCTCATAGTTCAGATAAGAC	AAGTAATGATAAATGTTGTCTTTAAGCACCTTTAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	GAGATTGCAGAACTTAAAGCAATGATGACAAAGCAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AGACGGAGGTTGTATCCTGTCCGTCGGATACCCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACGCCCTTCCTCACATGCCTTATAATATCTTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTGATTTGATGTTGAAATAGTTGAACATTTTTAAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCAGAGCAGCAACTAAGTTTTGATTTTCAAGAAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCTGCTGCTCCATCCTCGAATGTTGTAATTGCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCTTTGCTGACTAATAATTTGTATTTACTTGAAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	TATGCAGCCTCTTGCATAGCTGCATCCATCAACTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GAATTACAAACTCTATTGCTTTTGAAGGAACTTACGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTCCATTTCTTTGACAATCCGCTTGAATCCTTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTCAACAAGCATTTCAATAATTAATTCATTCACGGC
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGCTGTGTAATGCGTATCTCAAAGCATCCATGCAG
GTTTACATCCCTCATAGTTCAGATAAGAC	GTAGATTGGATAATCAATGAAGGTGTGGAATATCCG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAAACTGCAATTGACACACTTAATGACATTGCAAAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGCAGTGAATAAATCTCCGCCTGCTCTTTATCATCCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	AGGTAAAGCTGTCTTCACCAAGATATTGCTCGATAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGATGAGAAAGTGCATGTGGTTAGTACACTACCAGAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAGTTGCGAGGAACGTTCGTCTGCAGGGTATATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCTACCGAAATCGCCAAGTTTTGCTGTTGCAGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	ACCAGAGTACATTGAGTTTATCAAGAAGACATACAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGCTAAATTGAGCATGTTAGATAGCAATATCTAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CCTTCGGGCTGCGGAACGCTAAGCTTGCTTCTTGCCGA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATCAGAGAACTACATATAGAGAAATCGACCTTTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	GTGTGTTGGCATTGAAATGAACTGGGAAGATTACAGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GAACGAAGAAAAAATTGAAATATCTTTCTTGCGTGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CCCAGCACCGGGCTGCCCAGAAAGCTAAGATGTGAGGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CCACTGCACCGTTTACTTGGGTATCGAACAATTTAAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	ACTCCACATGACTATCATCCCACGAAACAAAACACG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGTGCCGTCTGGCATCGCATATACACATATAAGATCA
GTTTACATCCCTCATAGTTCAGATAAGAC	GGATAGTAGTCACACAAGAGCTTGGGCGACAGTTTGAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	AAAAGTGAAGCTGTAGCGTTTTTGATGAAACATTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTGGAACATGATAAAGAGCATCATTACAACAACA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGATGATAACGTTCAGCAAGAAGCAGAAGGAGTTTGCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TGACCCAAGCAGAGTAACTACCCCCATTCATCTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	ATATTTCAATATGTCCTGTTCCGTCCAAAATCCCAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGGTAATGCTGAAGAGTTTTTAAACAAATCACTCA
GTTTACATCCCTCATAGTTCAGATAAGAC	GTATACAACGAGGACTGAAACATATTATAAAGAAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTATCCTGTGGAGTCGAGCTTTGGCTTGTTCGTAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCCTTGAGCTTTTGAAAGAGTTCTTTTTTGCTTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CCATGATTTTCTTTGCTATCTCTTCTTTCTTTTGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTAGTGAATATTACCAAGCAATACTTATAACAAAGTA
GTTTACATCCCTCATAGTTCAGATAAGAC	GTTAAGTGTTCAACAAATAATTTACAAAACGTTAGA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTGCATTGATTTGAAAATACCCAGAAAAATCCAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TACTTTTGTAGCGTTAAAACTAACCATCAAGTTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACCTTGAGATAGTTTTTCATCTCGCTAAGAGTTAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAATAGGGAACTCTGGGATACTCTTGCTACTTCAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CTAAAGCTAAAAGCATTTGTGAATATTTAACCAAATCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAATTTTGAACTGGCACAAAAGGTTAAGCACATTA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGGCACAGCGTATGTTGTCAAAGAGTATTATCACGA
GTTTACATCCCTCATAGTTCAGATAAGAC	AATCCATAGTCAGCAAGCTGTGTTATTGTTCTTGTT
GTTTACATCCCTCATAGTTCAGATAAGAC	AATCAGAGAACTACATATAGAGAAATCGACCTTTTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CCAGCGGTATGTATCCAAGCACATCTTGGGTCTGTGGT
GTTTACATCCCTCATAGTTCAGATAAGAC	AGCAAGATAAAATCTGAATAAATAATTACTACGATA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATATGAGGCTTGTGGTTGATATCGCTAAGCGTTATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CAATAGCTGGTTATCAATATACAGTTGGTGGTGTAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGCTCTTTTTTCTTTCTCTCTATCTCTTCAAGTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGATGCCAGCTAATATGATGCCGTTGGCAACAATGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GCGCCGTGCTTGCTATTGTGTCCCAAGTGTTTTGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GGTCTGCTTTTATTCCGGCGTTGCCCAAGATAGCCA
GTTTACATCCCTCATAGTTCAGATAAGAC	CGTCGGTAATCTGTATGCCTAGTTGCTTCAACATTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGGTTGTCCATTATCCTTGGTGCCAGTATCACCCAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAAAGGAGTGATTACTTTGGATTTGAACTATGAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	ACTATTGACAAGGTCAGAGAAATAGCGAATTACTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TATGCCCCGATATAAAGGTGAGCCTACAAGTATG
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACATATTCCCTACCGTTGTAAACAACCCTATCATC
GTTTACATCCCTCATAGTTCAGATAAGAC	CATACCAGCAAGGTATTTGACAGGACAACTAATTTCA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTGAAAGAGAATTAAACAAAACAATAGACTACAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GATAAAGGCAATGAATGCAATGCTTGGTGGAAAAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CACGGGTCAAATCTTAAGTTTTACAGATACAATATAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCACATCACTACCCATGAATTCGAAATCAAACTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGCCTCCTCCAACGTCACCGGCTCCACCAGCGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCC
GTTTACATCCCTCATAGTTCAGATAAGAC	GAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACTGCCCATATAGTGCCAAATATTGCTAATCCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCGAAATAAATATGTCTCTGACGAGACATTGTCAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAATACTAAAGGAAACTGCCTTTTGAACGTAGTAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAACAGGGCTCACAGATTTATATGCTGTGAGGAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGATAGATAGCTTAAAAATTAATGATAGCTTAAAATT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AGCTTTTTGGAACGACTAATCCAGATAGCCCTTATCAT
GTTTACATCCCTCTCTCAATATACCTTTG

>NC_009437|11|10|2517708-2519967|PILER-CR
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGGTTGTCCATTATCCTTGGTGCCAGTATCACCCAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAAAGGAGTGATTACTTTGGATTTGAACTATGAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	ACTATTGACAAGGTCAGAGAAATAGCGAATTACTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TATGCCCCGATATAAAGGTGAGCCTACAAGTATG
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACATATTCCCTACCGTTGTAAACAACCCTATCATC
GTTTACATCCCTCATAGTTCAGATAAGAC	CATACCAGCAAGGTATTTGACAGGACAACTAATTTCA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTGAAAGAGAATTAAACAAAACAATAGACTACAA
GTTTACATCCCTCATAGTTCAGATAAGAC	GATAAAGGCAATGAATGCAATGCTTGGTGGAAAAG
GTTTACATCCCTCATAGTTCAGATAAGAC	TGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	AACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CACGGGTCAAATCTTAAGTTTTACAGATACAATATAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTTCACATCACTACCCATGAATTCGAAATCAAACTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGCCTCCTCCAACGTCACCGGCTCCACCAGCGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCC
GTTTACATCCCTCATAGTTCAGATAAGAC	GAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACTGCCCATATAGTGCCAAATATTGCTAATCCTAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCGAAATAAATATGTCTCTGACGAGACATTGTCAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAATACTAAAGGAAACTGCCTTTTGAACGTAGTAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TTGTAACAGGGCTCACAGATTTATATGCTGTGAGGAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGATAGATAGCTTAAAAATTAATGATAGCTTAAAATT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAA
GTTTACATCCCTCATAGTTCAGATAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011917885.1\|2498633_2500361_-\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_009437.1\|WP_011915673.1\|2508734_2509964_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011917886.1\|2500556_2501705_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_011917888.1\|2502477_2503683_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_009437.1\|WP_011917890.1\|2504542_2508004_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|143636
NC_009437.1\|WP_187147301.1\|2508452_2508629_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011917889.1\|2503745_2504165_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_009437.1\|WP_011917887.1\|2501749_2502481_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|293830
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011917884.1\|2498021_2498585_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011917885.1\|2498633_2500361_-\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	3.73802e-13
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.20111e-53
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	9.77705e-18
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.77802e-06
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	5.07908e-32
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	2.07822e-63
NC_009437.1\|WP_011915673.1\|2508734_2509964_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011917886.1\|2500556_2501705_+\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	6.39233e-08
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.28243e-68
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.83298e-65
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	8.75013e-63
NC_009437.1\|WP_011917888.1\|2502477_2503683_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.68263e-50
NC_009437.1\|WP_011917890.1\|2504542_2508004_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	2.11411e-56
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	4.22751e-28
NC_009437.1\|WP_011917887.1\|2501749_2502481_+\|metal-dependent-hydrolase	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	9.44968e-18
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011917884.1\|2498021_2498585_+\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	3.98993e-93

>NC_009437.1|WP_011917892.1|2510704_2511835_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYRGSKWQKLGSGR
>NC_009437.1|WP_011915673.1|2508734_2509964_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_187147301.1|2508452_2508629_-|hypothetical-protein
MQPGKDTGEIQIRFNKDDWSNYNQGNDWSWIQSMTSYGENEKVTAYIDGVLVWGQEPK
>NC_009437.1|WP_011917890.1|2504542_2508004_+|tetratricopeptide-repeat-protein
MVCFNCGNKIQSPNAEKCIFCGMKFKGVCPSCNSLLPTYINFCPNCGEFVRQGETNQQSVDELKKVAVLFADISGFTKLSEKISPDEVNNIINEFFEYILTPVYYYEGTIDKFIGDCVMILFGAKNSHLDDPKRAVLCAFEMLKLCNEFSVQKSLKISMSIGINYGIVAIGKVGGYYEKDYTVIGDVVNIAQRLQAAAPENTIYVSESIYRETFDLFLYSEAKEIYVKNKSNPIRCYIPLEIINEATTFDVISRIQDSYLSKLFNIIASKDTNSVLLLGPNGVGKTSLLEKLTNHLVANNIKTYYIRCSFNNYSRPYLLISQIICKVLNVSVDDVQTIKQHRLISFLDFLFKDDLEKKEICFKFLSIILQLDIEDDFRNLVSSMTQEDLEFEIRQNVLLFFDAFLSSNFSIFLIDDIHYADIESIQILEYLKTNLYCDKVIFIITSENESIHLNAEKTIYVHKLSHQETEEFLKSFFNVNTVDEKLIQLMVDISEGKISYLKEVCRWLYLNHQLCIQNNKLFLQNTNINASEIFYKIVEHRLSQLDKELIQFLKIAAVFGQRFNLRIVLNVLKPSKSENDIILTLSKSNFIKFVDITYQSSTADKIFEFANNIIFETVLRSIPKSTKISLHLKIAKSIEKLFRENISYYYELLIYHYREANDIINSSKYCILLANYYKKQLLYKYAVKYFKIAIEMLENYNQQKNNLYTRALEELSSLEKQMGNYVEALKYLNILDSVADAEKSLFIKCEICECLILTADFAKAKEILIGLEKNIDRNSTLYSKLVYLKSLFQCYTGASDISQILEEAETIIMQDNEIENLVKIFNVVAYTFYRNYGDINKAINYLQKAKSAAIKTNNIGLRVKLTSNLGVLYFQTGQINNAIQNLTSALEESKKISDRHSQIGILISLGIIHAKKGLLKKAYEYLNKAYENAKKWNFLYEECLCLLNIGEIYIEKGLLIHSYELFLASLNISETKMFTAEKALSFLNLAKVLILMKNWQAADEFLNKATSFIENLKDIDISYEYHLTKAEFFLLTNNFLDAEREIDISLKFAEKNIFRQIECIRKKGEILSAAEKYSEAIECFKNAIKLSETSGSALELAKCYFLLAKTYLKTSQKDQAKYYFEMSEKWSKLIDDECSIKTEIASFKKCLIS
>NC_009437.1|WP_011917889.1|2503745_2504165_-|hypothetical-protein
MKLHVLKKWSIAILLVFVLSLGLSSIAFAQDETPIQFSGSFTVTNEGGKFQVGFVEIDFKKDSLPDGIDAITFYAQIYAENGTVYIEFSPDAKFKKDVHLRCEGYEGYIYDRSAGKNIYVTLKKQQLKTDHFSRFPWLF
>NC_009437.1|WP_011917888.1|2502477_2503683_+|sensor-domain-containing-diguanylate-cyclase
MIEYDNPQDLKRLIKRLNKIGITISREKNVDTILEMILNESIDITNSDGGTLYIVKEFEGQKYLVITLAKNYSVDFNYIGYKIPIDNQSIVGYVAQNGIPVTINNIQNIQNSHMQQFKLFDQALHYKTLNLMAIPMTDYQGNVIGVLQIINKKKDKSIKLTEDNICQNIVDFTKEDEEIILSLASQASLLIERIHLYQRIEKNIANTRYALISLFNSMKQVIANLSEDILIEQEEFKKYASLDDLTGLFTRNEGMIYLEKQIQLSKMNETHFVVCFIDVDGLKQVNDTFGHQIGDELLKSFAQILKESIRSYDIAFRYGGDEFVLILYKATIREANIVLARIQNKIDEFNTKIQKPYKIQISYGFAEYSPTSNLSIEDLIKIADENMYKVKKEKKKSRPSY
>NC_009437.1|WP_011917887.1|2501749_2502481_+|metal-dependent-hydrolase
MSKENPLKFLGIGSAFNPNYNNTSAYFELEDNLFLIDCGGGIFNSLLSLKLLEKYLHLNVLITHTHPDHIASLGQLILYCYYQLNKKITLIFPQSEIILNLLDYMGIRNDIYILKTPQDFVNYLSKLTVISLEQVHVNELPCFGYLIYLNNVTFYYSGDSKSIPLYILTKFLEGEIDFLFQDTCSENHNHHPHLSIKELSEQIPPSKRKQVYCMHIDEKFDVNLAKNLGFNIPQEIIVERDAK
>NC_009437.1|WP_011917886.1|2500556_2501705_+|GAF-domain-containing-protein
MIELYDQISKLRNILEKLSSYVLYVSTEKNIEDILLQTIDICLELTTSDGATIYLKEMIENEEKLVIKATKNQSVNFEFYLGYSLPINSISLAGYVASNRKPVVINNTLSLPENHEYRQFKFFDRSLHYITINTITVPIFDYTNSVIGVLQVVNKKAKPQLKLEENNAHLFTIDYTDNDARIILAISALLGIILDRIWLHQKNEQLITNTQKMLSNIFDSVKKSILTLNDIMLTGQQKFIEYLQAEKRKKVLEFKEGLELCKKQIELSKVTETIITVCYLSIETSDNKVSNIFYEVLSSEIRIYDIPVMVKENEYVLLLYNVDLIKAKMIAKRIERKMIEKANSQNYNLPFKTKWSFYEIKPSEEKTLEEIFESLKSTVGDL
>NC_009437.1|WP_011917885.1|2498633_2500361_-|S-layer-homology-domain-containing-protein
MKVFKKRLLLICVVLVFAIVQIFSAIAFAQDTSSPIFSDLPQNHWAYNAVKFMVERGIITGYPDNTFRPDNPVTRAEFARIMVVALNLPIKVTDTPSFKDVPKDHWAYPYVESAKYYLTGFRTANGDYFKPSDYAVREDMAVALVKAKGLQNENVDMSILNNYIDKDQISPNLMKYIAIAISKGIMIGNPVTNSNQLRFDPQGVLTRAQAAMLLYNVINTREEKITYDDNNGAQNNQQPGYQKPNVSGYTKGDKVVLVWNRINDTRLKGYAVVISKNNIEPEYPKDGYLTIFNNRDNTYIEISVDSKYNNGDFGVYLKSGEEYYFSVTAIYDNNVYVKGNSIKLKMPVVPNYFEKPYVKYEYKDNKFVLSWQPINDSRLIGYYVVISKKNKEPKYPDNGYLVFINDKNTTQITIDNTIPYKGGDFGEYLRDGEEYYFSVTAQYQDRFVAGNSVKAVYYSNLDIANLRPKLEAKTIKKFFGIRYISLRWNKIDNDKLLGYKIVISENNSTPDYIKDGLLATITDRNITSINVKAKDKYLINNEYKDIKRGHYYYITIYAIYTDRIVGGNVLKVKIP
>NC_009437.1|WP_011917884.1|2498021_2498585_+|uracil-DNA-glycosylase
MTTWEELERSCLSCTKCPISKDRTNVVIGDGNKNAKLMFIGEAPGEEEDKQGKPFVGRAGKLLDLALDALELSRENDFYICNILKCRPPNNRVPTEYEAQNCLPYLRAQVKLVQPKIIVCLGATAMKYILGRNLKITQDRGKWFQKGEFHIMATYHPAALLRDPSKREDFYRDLKSVKEKLKEMIQF
>NC_009437.1|WP_011916684.1|2520586_2521873_-|IS110-like-element-ISCsa4-family-transposase
MKYTQNEKILQVTERTLVVGVDIAKERHVGRAFDFRGVELGKRIEFENRKEGMEKFLDWANKIMKANGKDNMIVGIEPTGHYWLCFEQYLRENGIKVVLVNPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEMPLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKTAVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVFYAILKKGVKYDGNKMLSDIKREALARTA
>NC_009437.1|WP_041722450.1|2524809_2525073_-|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011917894.1|2525327_2526308_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_011917895.1|2526313_2526829_-|CRISPR-associated-protein-Cas4
MSEELQDLQDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGRILHEYSYPKEETKEVLIDNLIMIDILSDGAVREVKYSSKMKEADIMQVMYYLYYLKQKGIEKQGIINYPKERKKEILQLTPEYEQKVKQALSEIEKITSQIVPPPATKQKICKSCAYFEFCWG
>NC_009437.1|WP_011917896.1|2526858_2529192_-|CRISPR-associated-helicase/endonuclease-Cas3
MSMKAYEDIELYAKRFKTEKGYEYQTIYEHTMTLLQNMEKLFKEYREEIKEGFQKLQIDLERFKYLLKLAIIYHDLGKANSNFQRKIRDKTKSNEVPQVRGLSVEVPHNFISIAFVDLEDEIDKGNISPEDFENLLFAIAFSHDRGFDFNYQYFEKYICEDVSKYLNNKTLLPLFKELPSFPTKDEIEKSSNYVYRTIDWLKEVMLKSYTDLYNKNTIMRILLKGFLHRLDHSSSAEVSTEEGKITDFSNKVESYLKEKGNFAGFKEFQLKALDFSTQNVILFAPTGSGKTEFGLNWAGRSKLIYTLPIRVSINAMYERLVRIFGSDKVGILHSDSMIYLLEKYSQSAEDVQELESLFDNVNLARNLSFPIIVTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIVNLNGRFCLMSATVNPLVLKYLGDISEYLQAYSDEELKKCWSHVVSVKPLSILDCVDEIVNCGKQQNVLVICNTVRRSQEVYKAIKESIKNFDDVPVELLHSRFLEGQRRQKEHFILSNQRKNSIVISTQLVEASLDIDYDVLFTELASADSLLQRMGRVYRKRPYEGQKPNVIILTKEPSGIGRVYQKEIVTRTEEFLKKFDGRRITEYDKKELNEYAYDVEALSNTNFMKSFKKAYELLKLGFKADRKIEAQKIFRDVVTVEGIPRKVFEVNEETIRECLKRIGSKSLSPVEKLQLISAVRKYTVTVPVYFFAKGGASEYSKKLGIFILNCDYDDELGLLPPKESEKDDIW
>NC_009437.1|WP_011917897.1|2529172_2529922_-|type-I-B-CRISPR-associated-protein-Cas5
MSQKLLKIKLYQPFANFRKPFSYGIVDSYPLPPPSTVKGWLHNILGAKNGEYYKMAVSICGKFNSIVYDIQRIIKFDRLRKEDSSAPILKDVSARVINDVIYVTNLVDVELCIHVNAEQEILERISHNIFNSYWGLGRKEDLLRVDEVKFFEPQVIEYRKYVKHNLLNIGMYLKTSTAEKLRVDGIRFRLNNRYIKTKDGLRIFTNKKDVVYFENLQHLNPIMSVSDKLLVDDENILIDLIGDDEYESL
>NC_009437.1|WP_011917898.1|2529924_2530854_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSKNAGITITVVFEAMSLNYGESVGNISELKKLTRENKVYTYMSRQALRYEKHKFMLENSEYREAPVTGDEQVVQFTKEATITQYPEIDLFGYMKTSGQGQGAQTRTAVVKITPAVSLEEYKNDIEFATNLNLAKRANTNPNPYQLEQHKSLYTYTVSVDLDRLGRDFDEKGNVIEEVPIEERLKRLYTLFDAIKFLSREIKGRRENLSPLFVIGGLYPVKNPFFLNRIKIIKDDVGYAIDARLLNSTCELTLPNGKKVYDYTLLGLIEGFFVNEEQLKKLLPDSSGTIDYFFETLKEKAQKYYKEGTV
>NC_009437.1|WP_011917899.1|2530850_2532491_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKERVYLGDWAYNAGIIGFIEIMLDGEDIDSQNIITIGPNYIEFERESLQGFSDKFFKKAYQRYPRTDEIMNEGKDLLAQLNNQSDIDEQQRERVRKFKDRINGFAKLNRVAKEYGCSLEKKFNKNEAVDYVNTIIKILEDRKQEFMENDVKVYLNNVSSVYGEASFLNRQITENLKEKFYNDFEKPIIEKANEEDKKYPCIFCGERKAKKGAMFNTGIVNFLGANKDNKNFFWNFKPQLPICEICELMYFCIFAALTEFRVGQTKRFYFVDKSTSVLELYQANKLFMEIMSKEENLLKDKGILNFINDYLLVKLREESKFALTNILFVEIDLSSVAPKVYGFNISKQKAEFVTSNYEFFENVVGTKITVKDNTLYPFHELLQRFLNNTLSFQFVSFLESQFISSKKVNSKIKTNLSPYRLQMFNIITYKFLKSIKRGEMLMDEKSLWRMYFFGQELKKTFLKSGAENKITSLAYRLISALRIGDINTFMNLVIRTYMNYNMEVPALFVSCINDKDNFCALGYSFVNGLLGSERDERLENEEDEEK
>NC_009437.1|WP_011917900.1|2532523_2533309_-|CRISPR-associated-endoribonuclease-Cas6
MRAKFIFEVHNGFNETKELPVYYRTLFMAFLKKALSSYNEEYFKRLYWWEDKKNKWQKPFVYAVNLPNMNFSDDKVLFRGDIVLNLSTSDYEFFVNIYNSLISSKLYPHKLTNNCEIKLRRAYLIKEPEQFSSTMTFKTFSPVVIEKKEGDDKIPILPYDEGFEEVLNDVIDFEIRNIRILRGQNRGLYKRISFKPINVKKIVVKHKISEFVENTGKEIMYLTGFGGIFELSGHPDDLKEIYQNGLGFRRGQGFGFIEVVR
>NC_009437.1|WP_011917901.1|2534293_2534926_+|flavodoxin-family-protein
MKVVAFNGSPRKEGNTYHAIKIVAEELQKEGIEVEIVQVGDKAIRGCLACGTCAKNRNERCVIDDEVNEWIQKMKETNGIILASPVHYASISATMKAFLDRAFYVAGVNGSLFRHKVGAALVAVRRSGGITAFNQLMQYLNYAEMLIATSNYWNVIHGRLPGEVLQDEEGVQIMRVLGKNMAWLLKLVENGKGNLKEPEKEPKIFTNFVR

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Crispr_ID: NC_009437_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_12

2521995-2524601

Unclear

I-A

Consensus_repeat	Method
GTTTACATCCCTCATAGTTCAGATAAGAC	CRISPRCasFinder
GTTTACATCCCTCATAGTTCAGATAAGAC	CRT
GTCTTATCTGAACTATGAGGGATGTAAAC	PILER-CR

39 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_009437_12

>merge|NC_009437|12|2521995-2524601|CRISPRCasFinder,CRT,PILER-CR
TACAGGAATGCTCATAGTTCAGATAAGACTATCAACATTGAACCAAAAGCTGTTATGTTGGTCATCAGTTTACATCCCTCATAGTTCAGATAAGACTAACGCAGACACGGCAACAAAAGAAAAAGCGTTGATAAGTTTACATCCCTCATAGTTCAGATAAGACTAAACATTACAGGCTTTAAGGACCGATTAGGTCGCAATGTTTACATCCCTCATAGTTCAGATAAGACCCGTCGTCGTCAACAACAAACTCGAAAGACAAAAGTTGGTTTACATCCCTCATAGTTCAGATAAGACCATAGATTTTGATATCACCATTTTCGGTGAGCACAACGTTTACATCCCTCATAGTTCAGATAAGACTAGCATTGTATCGTTGTAAGCGTTCTAATTCCCCTTCGTTTACATCCCTCATAGTTCAGATAAGACCAGAACCCAGAACAGGCAGGTAATGAATAATGACATGTTTACATCCCTCATAGTTCAGATAAGACTGCCAAACAAGGTTGACCAGCAGGTAATTGATGAGTTTGTTTACATCCCTCATAGTTCAGATAAGACGGCTAATTGCATGTTCAATAAGTACTTTTTGCCCTGGTTTACATCCCTCATAGTTCAGATAAGACCATCACCTCTGGGCTACATGTCCCTCGGGCACTGGCTGGTTTACATCCCTCATAGTTCAGATAAGACCAGAAAGGAGGGTAGCGGTTACATAATAGTAGTTTAGTGTTTACATCCCTCATAGTTCAGATAAGACCGAGATGGGCTTGCCATTAACCTTAGCCGACCGCATCTTGTTTACATCCCTCATAGTTCAGATAAGACCAACTCCTTCAGTAATAAGTGTGTCGCCTTTGTAGAGTGTTTACATCCCTCATAGTTCAGATAAGACTCGCAAAGCATCCATACAATGGTCGGCTACTTTTAAGTTTACATCCCTCATAGTTCAGATAAGACACGAAGCGATGAAGCTCATCGTGTGTTCACATGAGCTGTTTACATCCCTCATAGTTCAGATAAGACTCGTGAGGCCGTGAAACAAGCGAGCTTTCGTAATGCGCGTTTACATCCCTCATAGTTCAGATAAGACGCGGGTCAAGACCCTGGCGGAAGCGTAGAGGCCGAAAGTTTACATCCCTCATAGTTCAGATAAGACCTGGAAGCTGTCTACTGGGCGGCCCCAAAGTTACCGCGTTTACATCCCTCATAGTTCAGATAAGACGGCGCGGAAGCGGGGCAGACGATGCTCACCCTGATAAAGTTTACATCCCTCATAGTTCAGATAAGACCTGCGTACGCGGCATTCCCCTTGATGTTATCGCCCAGGGTTTACATCCCTCATAGTTCAGATAAGACCATGAAAATCCTTGCAGCTCCCGACCTCCACTGCTTCGTTTACATCCCTCATAGTTCAGATAAGACGCCCTGGACAAATTCGGCACCCCCTTAGTGGTAGCTGGTTTACATCCCTCATAGTTCAGATAAGACAAGGTCAGCGATTATTGGGAAATTAAACATAATCCGAGTTTACATCCCTCATAGTTCAGATAAGACATTAGCTGAGAGTGGCACAGCACTAAGAAGGTTGATGAGTTTACATCCCTCATAGTTCAGATAAGACTGCAACGTGCAACTTGACGCTGTATGTTTACAATGTGTTTACATCCCTCATAGTTCAGATAAGACGCTGGTGTTGCCGCTGCTGGGTTGCATATTTTACCTGTTTACATCCCTCATAGTTCAGATAAGACTACGATTTGCCTTATGCGATAGTGCAACACGAGAGACGTTTACATCCCTCATAGTTCAGATAAGACTAGAAGCTTCTACCTGCGAAAGCGTATACTTGGACCGTTTACATCCCTCATAGTTCAGATAAGACGTGCCAGTTTTGGCTTTTCTAATTACACATTTAAAACGTTTACATCCCTCATAGTTCAGATAAGACCAAAAAAAATAAGCTCAGCTATTGCTGAGCAACTATAGTTTACATCCCTCATAGTTCAGATAAGACACCGAGCGATACAAAGTCGGCAGCTTGTACATTTTTAGTTTACATCCCTCATAGTTCAGATAAGACTACCGGGAACTGGTGAGAAGCCAACCTTGTTAAAACCGTTTACATCCCTCATAGTTCAGATAAGACCTGGTCATTCAGGGTAGAATATCACAATTTGGATACGTTTACATCCCTCATAGTTCAGATAAGACTTATTTAGAAAAGGCTATTGTGATAAATCAATATGGGTTTACATCCCTCATAGTTCAGATAAGACCTTTGCTATTTCCTTTGATTATTCTATAAACTTGTGCGTTTACATCCTTCATAGTTCAGATAAGACGTTATTTAGAGACACAGCAAAATTTCTTGAGAAAAAGTTTACATCCTTCATAGTTCAGATAAGACATATATGAAAAGCAGAAAAGAGATATATTGAATGCAGTTTACATCCTTCATAGTTCAGATAAGACGTTTCTTCTATTGCTTTTCTCAGTTCATACGGTATATAGTTTACATCCTTCATAGTTCAGATAAGACTGATGATTATTACCAACAACATACAGATATAAAAAAGTTTACATCCTTCATAGTTCAGATAAGAC

>NC_009437|12|11|2521995-2524601|CRISPRCasFinder
TACAGGAATGCTCATAGTTCAGATAAGAC	TATCAACATTGAACCAAAAGCTGTTATGTTGGTCATCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACGCAGACACGGCAACAAAAGAAAAAGCGTTGATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAACATTACAGGCTTTAAGGACCGATTAGGTCGCAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CCGTCGTCGTCAACAACAAACTCGAAAGACAAAAGTTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATAGATTTTGATATCACCATTTTCGGTGAGCACAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGCATTGTATCGTTGTAAGCGTTCTAATTCCCCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAACCCAGAACAGGCAGGTAATGAATAATGACAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCCAAACAAGGTTGACCAGCAGGTAATTGATGAGTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCTAATTGCATGTTCAATAAGTACTTTTTGCCCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATCACCTCTGGGCTACATGTCCCTCGGGCACTGGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAAAGGAGGGTAGCGGTTACATAATAGTAGTTTAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGATGGGCTTGCCATTAACCTTAGCCGACCGCATCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACTCCTTCAGTAATAAGTGTGTCGCCTTTGTAGAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGCAAAGCATCCATACAATGGTCGGCTACTTTTAA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACGAAGCGATGAAGCTCATCGTGTGTTCACATGAGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGTGAGGCCGTGAAACAAGCGAGCTTTCGTAATGCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCGGGTCAAGACCCTGGCGGAAGCGTAGAGGCCGAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGAAGCTGTCTACTGGGCGGCCCCAAAGTTACCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCGCGGAAGCGGGGCAGACGATGCTCACCCTGATAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCGTACGCGGCATTCCCCTTGATGTTATCGCCCAGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATGAAAATCCTTGCAGCTCCCGACCTCCACTGCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCCCTGGACAAATTCGGCACCCCCTTAGTGGTAGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	AAGGTCAGCGATTATTGGGAAATTAAACATAATCCGA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATTAGCTGAGAGTGGCACAGCACTAAGAAGGTTGATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCAACGTGCAACTTGACGCTGTATGTTTACAATGT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCTGGTGTTGCCGCTGCTGGGTTGCATATTTTACCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TACGATTTGCCTTATGCGATAGTGCAACACGAGAGAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGAAGCTTCTACCTGCGAAAGCGTATACTTGGACC
GTTTACATCCCTCATAGTTCAGATAAGAC	GTGCCAGTTTTGGCTTTTCTAATTACACATTTAAAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAAAAAAATAAGCTCAGCTATTGCTGAGCAACTATA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACCGAGCGATACAAAGTCGGCAGCTTGTACATTTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TACCGGGAACTGGTGAGAAGCCAACCTTGTTAAAACC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGTCATTCAGGGTAGAATATCACAATTTGGATAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TTATTTAGAAAAGGCTATTGTGATAAATCAATATGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTTGCTATTTCCTTTGATTATTCTATAAACTTGTGC
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTATTTAGAGACACAGCAAAATTTCTTGAGAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC	ATATATGAAAAGCAGAAAAGAGATATATTGAATGCA
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTTCTTCTATTGCTTTTCTCAGTTCATACGGTATATA
GTTTACATCCTTCATAGTTCAGATAAGAC	TGATGATTATTACCAACAACATACAGATATAAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC

>NC_009437|12|7|2521995-2524601|CRT
TACAGGAATGCTCATAGTTCAGATAAGAC	TATCAACATTGAACCAAAAGCTGTTATGTTGGTCATCA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACGCAGACACGGCAACAAAAGAAAAAGCGTTGATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAACATTACAGGCTTTAAGGACCGATTAGGTCGCAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CCGTCGTCGTCAACAACAAACTCGAAAGACAAAAGTTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATAGATTTTGATATCACCATTTTCGGTGAGCACAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGCATTGTATCGTTGTAAGCGTTCTAATTCCCCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAACCCAGAACAGGCAGGTAATGAATAATGACAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCCAAACAAGGTTGACCAGCAGGTAATTGATGAGTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCTAATTGCATGTTCAATAAGTACTTTTTGCCCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATCACCTCTGGGCTACATGTCCCTCGGGCACTGGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAAAGGAGGGTAGCGGTTACATAATAGTAGTTTAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGATGGGCTTGCCATTAACCTTAGCCGACCGCATCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACTCCTTCAGTAATAAGTGTGTCGCCTTTGTAGAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGCAAAGCATCCATACAATGGTCGGCTACTTTTAA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACGAAGCGATGAAGCTCATCGTGTGTTCACATGAGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGTGAGGCCGTGAAACAAGCGAGCTTTCGTAATGCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCGGGTCAAGACCCTGGCGGAAGCGTAGAGGCCGAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGAAGCTGTCTACTGGGCGGCCCCAAAGTTACCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCGCGGAAGCGGGGCAGACGATGCTCACCCTGATAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCGTACGCGGCATTCCCCTTGATGTTATCGCCCAGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATGAAAATCCTTGCAGCTCCCGACCTCCACTGCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCCCTGGACAAATTCGGCACCCCCTTAGTGGTAGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	AAGGTCAGCGATTATTGGGAAATTAAACATAATCCGA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATTAGCTGAGAGTGGCACAGCACTAAGAAGGTTGATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCAACGTGCAACTTGACGCTGTATGTTTACAATGT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCTGGTGTTGCCGCTGCTGGGTTGCATATTTTACCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TACGATTTGCCTTATGCGATAGTGCAACACGAGAGAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGAAGCTTCTACCTGCGAAAGCGTATACTTGGACC
GTTTACATCCCTCATAGTTCAGATAAGAC	GTGCCAGTTTTGGCTTTTCTAATTACACATTTAAAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAAAAAAATAAGCTCAGCTATTGCTGAGCAACTATA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACCGAGCGATACAAAGTCGGCAGCTTGTACATTTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TACCGGGAACTGGTGAGAAGCCAACCTTGTTAAAACC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGTCATTCAGGGTAGAATATCACAATTTGGATAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TTATTTAGAAAAGGCTATTGTGATAAATCAATATGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTTGCTATTTCCTTTGATTATTCTATAAACTTGTGC
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTATTTAGAGACACAGCAAAATTTCTTGAGAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC	ATATATGAAAAGCAGAAAAGAGATATATTGAATGCA
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTTCTTCTATTGCTTTTCTCAGTTCATACGGTATATA
GTTTACATCCTTCATAGTTCAGATAAGAC	TGATGATTATTACCAACAACATACAGATATAAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC

>NC_009437|12|11|2522062-2524601|PILER-CR
GTTTACATCCCTCATAGTTCAGATAAGAC	TAACGCAGACACGGCAACAAAAGAAAAAGCGTTGATAA
GTTTACATCCCTCATAGTTCAGATAAGAC	TAAACATTACAGGCTTTAAGGACCGATTAGGTCGCAAT
GTTTACATCCCTCATAGTTCAGATAAGAC	CCGTCGTCGTCAACAACAAACTCGAAAGACAAAAGTTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATAGATTTTGATATCACCATTTTCGGTGAGCACAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGCATTGTATCGTTGTAAGCGTTCTAATTCCCCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAACCCAGAACAGGCAGGTAATGAATAATGACAT
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCCAAACAAGGTTGACCAGCAGGTAATTGATGAGTTT
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCTAATTGCATGTTCAATAAGTACTTTTTGCCCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATCACCTCTGGGCTACATGTCCCTCGGGCACTGGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	CAGAAAGGAGGGTAGCGGTTACATAATAGTAGTTTAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	CGAGATGGGCTTGCCATTAACCTTAGCCGACCGCATCTT
GTTTACATCCCTCATAGTTCAGATAAGAC	CAACTCCTTCAGTAATAAGTGTGTCGCCTTTGTAGAGT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGCAAAGCATCCATACAATGGTCGGCTACTTTTAA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACGAAGCGATGAAGCTCATCGTGTGTTCACATGAGCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TCGTGAGGCCGTGAAACAAGCGAGCTTTCGTAATGCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCGGGTCAAGACCCTGGCGGAAGCGTAGAGGCCGAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGAAGCTGTCTACTGGGCGGCCCCAAAGTTACCGC
GTTTACATCCCTCATAGTTCAGATAAGAC	GGCGCGGAAGCGGGGCAGACGATGCTCACCCTGATAAA
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGCGTACGCGGCATTCCCCTTGATGTTATCGCCCAGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CATGAAAATCCTTGCAGCTCCCGACCTCCACTGCTTC
GTTTACATCCCTCATAGTTCAGATAAGAC	GCCCTGGACAAATTCGGCACCCCCTTAGTGGTAGCTG
GTTTACATCCCTCATAGTTCAGATAAGAC	AAGGTCAGCGATTATTGGGAAATTAAACATAATCCGA
GTTTACATCCCTCATAGTTCAGATAAGAC	ATTAGCTGAGAGTGGCACAGCACTAAGAAGGTTGATGA
GTTTACATCCCTCATAGTTCAGATAAGAC	TGCAACGTGCAACTTGACGCTGTATGTTTACAATGT
GTTTACATCCCTCATAGTTCAGATAAGAC	GCTGGTGTTGCCGCTGCTGGGTTGCATATTTTACCT
GTTTACATCCCTCATAGTTCAGATAAGAC	TACGATTTGCCTTATGCGATAGTGCAACACGAGAGAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TAGAAGCTTCTACCTGCGAAAGCGTATACTTGGACC
GTTTACATCCCTCATAGTTCAGATAAGAC	GTGCCAGTTTTGGCTTTTCTAATTACACATTTAAAAC
GTTTACATCCCTCATAGTTCAGATAAGAC	CAAAAAAAATAAGCTCAGCTATTGCTGAGCAACTATA
GTTTACATCCCTCATAGTTCAGATAAGAC	ACCGAGCGATACAAAGTCGGCAGCTTGTACATTTTTA
GTTTACATCCCTCATAGTTCAGATAAGAC	TACCGGGAACTGGTGAGAAGCCAACCTTGTTAAAACC
GTTTACATCCCTCATAGTTCAGATAAGAC	CTGGTCATTCAGGGTAGAATATCACAATTTGGATAC
GTTTACATCCCTCATAGTTCAGATAAGAC	TTATTTAGAAAAGGCTATTGTGATAAATCAATATGG
GTTTACATCCCTCATAGTTCAGATAAGAC	CTTTGCTATTTCCTTTGATTATTCTATAAACTTGTGC
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTATTTAGAGACACAGCAAAATTTCTTGAGAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC	ATATATGAAAAGCAGAAAAGAGATATATTGAATGCA
GTTTACATCCTTCATAGTTCAGATAAGAC	GTTTCTTCTATTGCTTTTCTCAGTTCATACGGTATATA
GTTTACATCCTTCATAGTTCAGATAAGAC	TGATGATTATTACCAACAACATACAGATATAAAAAA
GTTTACATCCTTCATAGTTCAGATAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_011917885.1\|2498633_2500361_-\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_009437.1\|WP_011915673.1\|2508734_2509964_+\|IS256-like-element-ISCsa2-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_009437.1\|WP_011917886.1\|2500556_2501705_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_009437.1\|WP_011917888.1\|2502477_2503683_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_009437.1\|WP_011917890.1\|2504542_2508004_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|143636
NC_009437.1\|WP_187147301.1\|2508452_2508629_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011917889.1\|2503745_2504165_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_009437.1\|WP_011917902.1\|2535473_2537198_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_009437.1\|WP_011917887.1\|2501749_2502481_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|293830
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_011917885.1\|2498633_2500361_-\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	3.73802e-13
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.20111e-53
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.77802e-06
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	5.07908e-32
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	2.07822e-63
NC_009437.1\|WP_011915673.1\|2508734_2509964_+\|IS256-like-element-ISCsa2-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.33536e-63
NC_009437.1\|WP_011917886.1\|2500556_2501705_+\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	6.39233e-08
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.28243e-68
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.83298e-65
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	9.77705e-18
NC_009437.1\|WP_011917888.1\|2502477_2503683_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.68263e-50
NC_009437.1\|WP_011917890.1\|2504542_2508004_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	2.11411e-56
NC_009437.1\|WP_011917902.1\|2535473_2537198_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.70608e-51
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	4.22751e-28
NC_009437.1\|WP_011917887.1\|2501749_2502481_+\|metal-dependent-hydrolase	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	9.44968e-18
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	8.75013e-63

>NC_009437.1|WP_011916684.1|2520586_2521873_-|IS110-like-element-ISCsa4-family-transposase
MKYTQNEKILQVTERTLVVGVDIAKERHVGRAFDFRGVELGKRIEFENRKEGMEKFLDWANKIMKANGKDNMIVGIEPTGHYWLCFEQYLRENGIKVVLVNPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEMPLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKTAVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVFYAILKKGVKYDGNKMLSDIKREALARTA
>NC_009437.1|WP_011917892.1|2510704_2511835_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYRGSKWQKLGSGR
>NC_009437.1|WP_011915673.1|2508734_2509964_+|IS256-like-element-ISCsa2-family-transposase
MEKNEIFETAKNMAIEQVLNMYCSKDDPTRPALKQLLENLLDCFMLSERTVYLAKNENDKGNGFYGRKLATPVGSLEISVPRTRSGNFRPSILPDRYKRVDSSYTDLLMSLVANGYSESSLVQTLKSMNLPYSEDEIEKIKNDLKNELQLFKQRELPESAFALIIDGYHCEIKDNSKVKQATCYVVLGIDLEGKKDIFGIYTFFGKENKADWMRVFDDLITRGLKKVLIVVSDDFPGIIDAVRLAYPLADHQLCFVHLQRNVRKHMAKDDASVFNKELDKLRTSSADFDEAISKFKLLCEQYSSKYPRFIKGICEKAEFYLAHMRYPEDLRKYIYTTNAVESVNSMIEKIRINSGGYFQSVEVLEINIYLQRENLRRGKWKNGVPILKKCSYNILQLYNIRYEMETQNS
>NC_009437.1|WP_187147301.1|2508452_2508629_-|hypothetical-protein
MQPGKDTGEIQIRFNKDDWSNYNQGNDWSWIQSMTSYGENEKVTAYIDGVLVWGQEPK
>NC_009437.1|WP_011917890.1|2504542_2508004_+|tetratricopeptide-repeat-protein
MVCFNCGNKIQSPNAEKCIFCGMKFKGVCPSCNSLLPTYINFCPNCGEFVRQGETNQQSVDELKKVAVLFADISGFTKLSEKISPDEVNNIINEFFEYILTPVYYYEGTIDKFIGDCVMILFGAKNSHLDDPKRAVLCAFEMLKLCNEFSVQKSLKISMSIGINYGIVAIGKVGGYYEKDYTVIGDVVNIAQRLQAAAPENTIYVSESIYRETFDLFLYSEAKEIYVKNKSNPIRCYIPLEIINEATTFDVISRIQDSYLSKLFNIIASKDTNSVLLLGPNGVGKTSLLEKLTNHLVANNIKTYYIRCSFNNYSRPYLLISQIICKVLNVSVDDVQTIKQHRLISFLDFLFKDDLEKKEICFKFLSIILQLDIEDDFRNLVSSMTQEDLEFEIRQNVLLFFDAFLSSNFSIFLIDDIHYADIESIQILEYLKTNLYCDKVIFIITSENESIHLNAEKTIYVHKLSHQETEEFLKSFFNVNTVDEKLIQLMVDISEGKISYLKEVCRWLYLNHQLCIQNNKLFLQNTNINASEIFYKIVEHRLSQLDKELIQFLKIAAVFGQRFNLRIVLNVLKPSKSENDIILTLSKSNFIKFVDITYQSSTADKIFEFANNIIFETVLRSIPKSTKISLHLKIAKSIEKLFRENISYYYELLIYHYREANDIINSSKYCILLANYYKKQLLYKYAVKYFKIAIEMLENYNQQKNNLYTRALEELSSLEKQMGNYVEALKYLNILDSVADAEKSLFIKCEICECLILTADFAKAKEILIGLEKNIDRNSTLYSKLVYLKSLFQCYTGASDISQILEEAETIIMQDNEIENLVKIFNVVAYTFYRNYGDINKAINYLQKAKSAAIKTNNIGLRVKLTSNLGVLYFQTGQINNAIQNLTSALEESKKISDRHSQIGILISLGIIHAKKGLLKKAYEYLNKAYENAKKWNFLYEECLCLLNIGEIYIEKGLLIHSYELFLASLNISETKMFTAEKALSFLNLAKVLILMKNWQAADEFLNKATSFIENLKDIDISYEYHLTKAEFFLLTNNFLDAEREIDISLKFAEKNIFRQIECIRKKGEILSAAEKYSEAIECFKNAIKLSETSGSALELAKCYFLLAKTYLKTSQKDQAKYYFEMSEKWSKLIDDECSIKTEIASFKKCLIS
>NC_009437.1|WP_011917889.1|2503745_2504165_-|hypothetical-protein
MKLHVLKKWSIAILLVFVLSLGLSSIAFAQDETPIQFSGSFTVTNEGGKFQVGFVEIDFKKDSLPDGIDAITFYAQIYAENGTVYIEFSPDAKFKKDVHLRCEGYEGYIYDRSAGKNIYVTLKKQQLKTDHFSRFPWLF
>NC_009437.1|WP_011917888.1|2502477_2503683_+|sensor-domain-containing-diguanylate-cyclase
MIEYDNPQDLKRLIKRLNKIGITISREKNVDTILEMILNESIDITNSDGGTLYIVKEFEGQKYLVITLAKNYSVDFNYIGYKIPIDNQSIVGYVAQNGIPVTINNIQNIQNSHMQQFKLFDQALHYKTLNLMAIPMTDYQGNVIGVLQIINKKKDKSIKLTEDNICQNIVDFTKEDEEIILSLASQASLLIERIHLYQRIEKNIANTRYALISLFNSMKQVIANLSEDILIEQEEFKKYASLDDLTGLFTRNEGMIYLEKQIQLSKMNETHFVVCFIDVDGLKQVNDTFGHQIGDELLKSFAQILKESIRSYDIAFRYGGDEFVLILYKATIREANIVLARIQNKIDEFNTKIQKPYKIQISYGFAEYSPTSNLSIEDLIKIADENMYKVKKEKKKSRPSY
>NC_009437.1|WP_011917887.1|2501749_2502481_+|metal-dependent-hydrolase
MSKENPLKFLGIGSAFNPNYNNTSAYFELEDNLFLIDCGGGIFNSLLSLKLLEKYLHLNVLITHTHPDHIASLGQLILYCYYQLNKKITLIFPQSEIILNLLDYMGIRNDIYILKTPQDFVNYLSKLTVISLEQVHVNELPCFGYLIYLNNVTFYYSGDSKSIPLYILTKFLEGEIDFLFQDTCSENHNHHPHLSIKELSEQIPPSKRKQVYCMHIDEKFDVNLAKNLGFNIPQEIIVERDAK
>NC_009437.1|WP_011917886.1|2500556_2501705_+|GAF-domain-containing-protein
MIELYDQISKLRNILEKLSSYVLYVSTEKNIEDILLQTIDICLELTTSDGATIYLKEMIENEEKLVIKATKNQSVNFEFYLGYSLPINSISLAGYVASNRKPVVINNTLSLPENHEYRQFKFFDRSLHYITINTITVPIFDYTNSVIGVLQVVNKKAKPQLKLEENNAHLFTIDYTDNDARIILAISALLGIILDRIWLHQKNEQLITNTQKMLSNIFDSVKKSILTLNDIMLTGQQKFIEYLQAEKRKKVLEFKEGLELCKKQIELSKVTETIITVCYLSIETSDNKVSNIFYEVLSSEIRIYDIPVMVKENEYVLLLYNVDLIKAKMIAKRIERKMIEKANSQNYNLPFKTKWSFYEIKPSEEKTLEEIFESLKSTVGDL
>NC_009437.1|WP_011917885.1|2498633_2500361_-|S-layer-homology-domain-containing-protein
MKVFKKRLLLICVVLVFAIVQIFSAIAFAQDTSSPIFSDLPQNHWAYNAVKFMVERGIITGYPDNTFRPDNPVTRAEFARIMVVALNLPIKVTDTPSFKDVPKDHWAYPYVESAKYYLTGFRTANGDYFKPSDYAVREDMAVALVKAKGLQNENVDMSILNNYIDKDQISPNLMKYIAIAISKGIMIGNPVTNSNQLRFDPQGVLTRAQAAMLLYNVINTREEKITYDDNNGAQNNQQPGYQKPNVSGYTKGDKVVLVWNRINDTRLKGYAVVISKNNIEPEYPKDGYLTIFNNRDNTYIEISVDSKYNNGDFGVYLKSGEEYYFSVTAIYDNNVYVKGNSIKLKMPVVPNYFEKPYVKYEYKDNKFVLSWQPINDSRLIGYYVVISKKNKEPKYPDNGYLVFINDKNTTQITIDNTIPYKGGDFGEYLRDGEEYYFSVTAQYQDRFVAGNSVKAVYYSNLDIANLRPKLEAKTIKKFFGIRYISLRWNKIDNDKLLGYKIVISENNSTPDYIKDGLLATITDRNITSINVKAKDKYLINNEYKDIKRGHYYYITIYAIYTDRIVGGNVLKVKIP
>NC_009437.1|WP_041722450.1|2524809_2525073_-|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011917894.1|2525327_2526308_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_011917895.1|2526313_2526829_-|CRISPR-associated-protein-Cas4
MSEELQDLQDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGRILHEYSYPKEETKEVLIDNLIMIDILSDGAVREVKYSSKMKEADIMQVMYYLYYLKQKGIEKQGIINYPKERKKEILQLTPEYEQKVKQALSEIEKITSQIVPPPATKQKICKSCAYFEFCWG
>NC_009437.1|WP_011917896.1|2526858_2529192_-|CRISPR-associated-helicase/endonuclease-Cas3
MSMKAYEDIELYAKRFKTEKGYEYQTIYEHTMTLLQNMEKLFKEYREEIKEGFQKLQIDLERFKYLLKLAIIYHDLGKANSNFQRKIRDKTKSNEVPQVRGLSVEVPHNFISIAFVDLEDEIDKGNISPEDFENLLFAIAFSHDRGFDFNYQYFEKYICEDVSKYLNNKTLLPLFKELPSFPTKDEIEKSSNYVYRTIDWLKEVMLKSYTDLYNKNTIMRILLKGFLHRLDHSSSAEVSTEEGKITDFSNKVESYLKEKGNFAGFKEFQLKALDFSTQNVILFAPTGSGKTEFGLNWAGRSKLIYTLPIRVSINAMYERLVRIFGSDKVGILHSDSMIYLLEKYSQSAEDVQELESLFDNVNLARNLSFPIIVTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIVNLNGRFCLMSATVNPLVLKYLGDISEYLQAYSDEELKKCWSHVVSVKPLSILDCVDEIVNCGKQQNVLVICNTVRRSQEVYKAIKESIKNFDDVPVELLHSRFLEGQRRQKEHFILSNQRKNSIVISTQLVEASLDIDYDVLFTELASADSLLQRMGRVYRKRPYEGQKPNVIILTKEPSGIGRVYQKEIVTRTEEFLKKFDGRRITEYDKKELNEYAYDVEALSNTNFMKSFKKAYELLKLGFKADRKIEAQKIFRDVVTVEGIPRKVFEVNEETIRECLKRIGSKSLSPVEKLQLISAVRKYTVTVPVYFFAKGGASEYSKKLGIFILNCDYDDELGLLPPKESEKDDIW
>NC_009437.1|WP_011917897.1|2529172_2529922_-|type-I-B-CRISPR-associated-protein-Cas5
MSQKLLKIKLYQPFANFRKPFSYGIVDSYPLPPPSTVKGWLHNILGAKNGEYYKMAVSICGKFNSIVYDIQRIIKFDRLRKEDSSAPILKDVSARVINDVIYVTNLVDVELCIHVNAEQEILERISHNIFNSYWGLGRKEDLLRVDEVKFFEPQVIEYRKYVKHNLLNIGMYLKTSTAEKLRVDGIRFRLNNRYIKTKDGLRIFTNKKDVVYFENLQHLNPIMSVSDKLLVDDENILIDLIGDDEYESL
>NC_009437.1|WP_011917898.1|2529924_2530854_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSKNAGITITVVFEAMSLNYGESVGNISELKKLTRENKVYTYMSRQALRYEKHKFMLENSEYREAPVTGDEQVVQFTKEATITQYPEIDLFGYMKTSGQGQGAQTRTAVVKITPAVSLEEYKNDIEFATNLNLAKRANTNPNPYQLEQHKSLYTYTVSVDLDRLGRDFDEKGNVIEEVPIEERLKRLYTLFDAIKFLSREIKGRRENLSPLFVIGGLYPVKNPFFLNRIKIIKDDVGYAIDARLLNSTCELTLPNGKKVYDYTLLGLIEGFFVNEEQLKKLLPDSSGTIDYFFETLKEKAQKYYKEGTV
>NC_009437.1|WP_011917899.1|2530850_2532491_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKERVYLGDWAYNAGIIGFIEIMLDGEDIDSQNIITIGPNYIEFERESLQGFSDKFFKKAYQRYPRTDEIMNEGKDLLAQLNNQSDIDEQQRERVRKFKDRINGFAKLNRVAKEYGCSLEKKFNKNEAVDYVNTIIKILEDRKQEFMENDVKVYLNNVSSVYGEASFLNRQITENLKEKFYNDFEKPIIEKANEEDKKYPCIFCGERKAKKGAMFNTGIVNFLGANKDNKNFFWNFKPQLPICEICELMYFCIFAALTEFRVGQTKRFYFVDKSTSVLELYQANKLFMEIMSKEENLLKDKGILNFINDYLLVKLREESKFALTNILFVEIDLSSVAPKVYGFNISKQKAEFVTSNYEFFENVVGTKITVKDNTLYPFHELLQRFLNNTLSFQFVSFLESQFISSKKVNSKIKTNLSPYRLQMFNIITYKFLKSIKRGEMLMDEKSLWRMYFFGQELKKTFLKSGAENKITSLAYRLISALRIGDINTFMNLVIRTYMNYNMEVPALFVSCINDKDNFCALGYSFVNGLLGSERDERLENEEDEEK
>NC_009437.1|WP_011917900.1|2532523_2533309_-|CRISPR-associated-endoribonuclease-Cas6
MRAKFIFEVHNGFNETKELPVYYRTLFMAFLKKALSSYNEEYFKRLYWWEDKKNKWQKPFVYAVNLPNMNFSDDKVLFRGDIVLNLSTSDYEFFVNIYNSLISSKLYPHKLTNNCEIKLRRAYLIKEPEQFSSTMTFKTFSPVVIEKKEGDDKIPILPYDEGFEEVLNDVIDFEIRNIRILRGQNRGLYKRISFKPINVKKIVVKHKISEFVENTGKEIMYLTGFGGIFELSGHPDDLKEIYQNGLGFRRGQGFGFIEVVR
>NC_009437.1|WP_011917901.1|2534293_2534926_+|flavodoxin-family-protein
MKVVAFNGSPRKEGNTYHAIKIVAEELQKEGIEVEIVQVGDKAIRGCLACGTCAKNRNERCVIDDEVNEWIQKMKETNGIILASPVHYASISATMKAFLDRAFYVAGVNGSLFRHKVGAALVAVRRSGGITAFNQLMQYLNYAEMLIATSNYWNVIHGRLPGEVLQDEEGVQIMRVLGKNMAWLLKLVENGKGNLKEPEKEPKIFTNFVR
>NC_009437.1|WP_011917902.1|2535473_2537198_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MAKHTQKGKSAATAAVSDKEKARFVPKNIQAEIKEKIKDTGEKVAKAEGKDKALLQLKLESNKKVDKKKFKKDRSVERNKTSLNRFLSLDKIKSLYSKEIHNKLSHIFEDAVSEVYRILMGLKYIKKAPNYTEIVLKAKIFSTLILMIVILFLINKMPSTYKKAYAVVLNNQIVGYVKDKTEAQNLLTQIKKEVEERHNTDSFILQSKLQLKSIEPGQYRETRVDELKNTIIEKGKVLVKRYAIFVNSKPYFVFENPQTPNNILNKLKKVYYNDKASQAKFLEKVEIKPVYVSPAIKVADEATALTKIMFGKDQVIEYTVKEGDTLWDLSRKYNLAVDDIFASNPGLSEKIVPGQKIKLTKATPLINVMLEKEVEYEEVLPKEVKVIKSGNYYTTQTIVKQEGKDGKAKIRAKIVYMNGLEYDRQIISQQLIQKPVERIVVVGTKKPPAYVATGRFSLPAWGTLTSRFGYRGREFHEGIDLAMPWGSNVYAADGGVVEFTGWSGGYGKLVIINHKNGYQTYYGHLSRILVSPGQKVVKGQLIAKSGSTGRSTGPHLHFEVRKNGVPQNPLRYLR

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Crispr_ID: NC_009437_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009437_13

2533555-2533850

Unclear

Consensus_repeat	Method
GTTTACANCCCTCATAGTTCAGATANNA	CRT
GTTTACACCCCTCATAGTTCAGATACAATT	CRISPRCasFinder

4 spacers

cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NC_009437_13

>merge|NC_009437|13|2533555-2533850|CRT,CRISPRCasFinder
TTTCAACAGCTCCATAGTCCAGATAAGACTGTATAAAAACAATGAAAGTTCTAAAAATAGTATCAATCGTTTACATCGCTCATAGTTCAGATAAAACAGGTCGATATCGAGGCGAGGCGGACTTGAAGGGTTAAGTTTACACCCCTCATAGTTCAGATACGTTGAATATGAATCTAAATACTCAAAAGCTGAAAAGGTTAAGTTTACACCCCTCATAGTTCAGATACAATTTACCCACTTAATATCTTCAATTGCCCAGTGATTGTGTTTACACCCCTCATAGTTCAGATACAATT

>NC_009437|13|8|2533555-2533848|CRT
TTTCAACAGCTCCATAGTCCAGATAAGA	CTGTATAAAAACAATGAAAGTTCTAAAAATAGTATCAATC
GTTTACATCGCTCATAGTTCAGATAAAA	CAGGTCGATATCGAGGCGAGGCGGACTTGAAGGGTTAA
GTTTACACCCCTCATAGTTCAGATACGT	TGAATATGAATCTAAATACTCAAAAGCTGAAAAGGTTAA
GTTTACACCCCTCATAGTTCAGATACAA	TTTACCCACTTAATATCTTCAATTGCCCAGTGATTGT
GTTTACACCCCTCATAGTTCAGATACAA

>NC_009437|13|12|2533623-2533850|CRISPRCasFinder
GTTTACATCGCTCATAGTTCAGATAAAACA	GGTCGATATCGAGGCGAGGCGGACTTGAAGGGTTAA
GTTTACACCCCTCATAGTTCAGATACGTTG	AATATGAATCTAAATACTCAAAAGCTGAAAAGGTTAA
GTTTACACCCCTCATAGTTCAGATACAATT	TACCCACTTAATATCTTCAATTGCCCAGTGATTGT
GTTTACACCCCTCATAGTTCAGATACAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009437.1\|WP_187147302.1\|2538850_2539792_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|214750
NC_009437.1\|WP_011917908.1\|2542106_2543627_-\|xylan-1,4-beta-xylosidase	unknown	unknown	gnl\|CDD\|366525
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	unknown	unknown	gnl\|CDD\|225949
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_009437.1\|WP_041722897.1\|2541056_2542052_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|366032
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_009437.1\|WP_011917910.1\|2545768_2549812_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350117
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_009437.1\|WP_011917906.1\|2540222_2541023_-\|acetylesterase	unknown	unknown	gnl\|CDD\|223700
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_009437.1\|WP_011917902.1\|2535473_2537198_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_009437.1\|WP_011917903.1\|2537368_2538817_-\|beta-xylosidase	unknown	unknown	gnl\|CDD\|366525
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009437.1\|WP_011917905.1\|2539788_2540109_-\|hypothetical-protein	unknown	unknown	unknown
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009437.1\|WP_011917909.1\|2543650_2545753_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|366032

Protein	Function_ID	Function_description	E-value
NC_009437.1\|WP_187147302.1\|2538850_2539792_-\|endo-1,4-beta-xylanase	gnl\|CDD\|214750	smart00633, Glyco_10, Glycosyl hydrolase family 10.	3.16726e-99
NC_009437.1\|WP_011917892.1\|2510704_2511835_-\|IS481-like-element-ISCsa6-family-transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.77802e-06
NC_009437.1\|WP_011917901.1\|2534293_2534926_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.20111e-53
NC_009437.1\|WP_011917894.1\|2525327_2526308_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.21129e-172
NC_009437.1\|WP_011917899.1\|2530850_2532491_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	2.07822e-63
NC_009437.1\|WP_041722897.1\|2541056_2542052_-\|endo-1,4-beta-xylanase	gnl\|CDD\|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	5.56016e-120
NC_009437.1\|WP_011917896.1\|2526858_2529192_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.28243e-68
NC_009437.1\|WP_011917898.1\|2529924_2530854_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.83298e-65
NC_009437.1\|WP_011917910.1\|2545768_2549812_-\|family-43-glycosylhydrolase	gnl\|CDD\|350117	cd09003, GH43_XynD-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis arabinoxylan arabinofuranohydrolase (XynD;BsAXH-m23;BSU18160). This glycosyl hydrolase family 43 (GH43) subgroup includes characterized Bacillus subtilis arabinoxylan arabinofuranohydrolase (AXH), Caldicellulosiruptor sp. Tok7B.1 beta-1,4-xylanase (EC 3.2.1.8) / alpha-L-arabinosidase (EC 3.2.1.55) XynA, Caldicellulosiruptor sp. Rt69B.1 xylanase C (EC 3.2.1.8) XynC, and Caldicellulosiruptor saccharolyticus beta-xylosidase (EC 3.2.1.37)/ alpha-L-arabinofuranosidase (EC 3.2.1.55) XynF. It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. It belongs to the GH43_AXH-like subgroup which includes enzymes that have been annotated as having beta-xylosidase, alpha-L-arabinofuranosidase and arabinoxylan alpha-L-1,3-arabinofuranohydrolase, xylanase (endo-alpha-L-arabinanase) as well as AXH activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Bacillus subtilis AXH (BsAXH-m2,3) has been shown to cleave arabinose units from O-2- or O-3-mono-substituted xylose residues and superposition of its structure with known structures of the GH43 exo-acting enzymes, beta-xylosidase and alpha-L-arabinanase, each in complex with their substrate, reveals a different orientation of the sugar backbone. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NC_009437.1\|WP_011917900.1\|2532523_2533309_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	9.77705e-18
NC_009437.1\|WP_011917908.1\|2542106_2543627_-\|xylan-1,4-beta-xylosidase	gnl\|CDD\|366525	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39.	0
NC_009437.1\|WP_011917897.1\|2529172_2529922_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	5.07908e-32
NC_009437.1\|WP_011917902.1\|2535473_2537198_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.70608e-51
NC_009437.1\|WP_011916684.1\|2520586_2521873_-\|IS110-like-element-ISCsa4-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	4.22751e-28
NC_009437.1\|WP_011917903.1\|2537368_2538817_-\|beta-xylosidase	gnl\|CDD\|366525	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39.	0
NC_009437.1\|WP_041722450.1\|2524809_2525073_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02244e-28
NC_009437.1\|WP_011917906.1\|2540222_2541023_-\|acetylesterase	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	6.51483e-23
NC_009437.1\|WP_011917895.1\|2526313_2526829_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	8.75013e-63
NC_009437.1\|WP_011917909.1\|2543650_2545753_-\|endo-1,4-beta-xylanase	gnl\|CDD\|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	3.39557e-156

>NC_009437.1|WP_011917900.1|2532523_2533309_-|CRISPR-associated-endoribonuclease-Cas6
MRAKFIFEVHNGFNETKELPVYYRTLFMAFLKKALSSYNEEYFKRLYWWEDKKNKWQKPFVYAVNLPNMNFSDDKVLFRGDIVLNLSTSDYEFFVNIYNSLISSKLYPHKLTNNCEIKLRRAYLIKEPEQFSSTMTFKTFSPVVIEKKEGDDKIPILPYDEGFEEVLNDVIDFEIRNIRILRGQNRGLYKRISFKPINVKKIVVKHKISEFVENTGKEIMYLTGFGGIFELSGHPDDLKEIYQNGLGFRRGQGFGFIEVVR
>NC_009437.1|WP_011917899.1|2530850_2532491_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKERVYLGDWAYNAGIIGFIEIMLDGEDIDSQNIITIGPNYIEFERESLQGFSDKFFKKAYQRYPRTDEIMNEGKDLLAQLNNQSDIDEQQRERVRKFKDRINGFAKLNRVAKEYGCSLEKKFNKNEAVDYVNTIIKILEDRKQEFMENDVKVYLNNVSSVYGEASFLNRQITENLKEKFYNDFEKPIIEKANEEDKKYPCIFCGERKAKKGAMFNTGIVNFLGANKDNKNFFWNFKPQLPICEICELMYFCIFAALTEFRVGQTKRFYFVDKSTSVLELYQANKLFMEIMSKEENLLKDKGILNFINDYLLVKLREESKFALTNILFVEIDLSSVAPKVYGFNISKQKAEFVTSNYEFFENVVGTKITVKDNTLYPFHELLQRFLNNTLSFQFVSFLESQFISSKKVNSKIKTNLSPYRLQMFNIITYKFLKSIKRGEMLMDEKSLWRMYFFGQELKKTFLKSGAENKITSLAYRLISALRIGDINTFMNLVIRTYMNYNMEVPALFVSCINDKDNFCALGYSFVNGLLGSERDERLENEEDEEK
>NC_009437.1|WP_011917898.1|2529924_2530854_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSKNAGITITVVFEAMSLNYGESVGNISELKKLTRENKVYTYMSRQALRYEKHKFMLENSEYREAPVTGDEQVVQFTKEATITQYPEIDLFGYMKTSGQGQGAQTRTAVVKITPAVSLEEYKNDIEFATNLNLAKRANTNPNPYQLEQHKSLYTYTVSVDLDRLGRDFDEKGNVIEEVPIEERLKRLYTLFDAIKFLSREIKGRRENLSPLFVIGGLYPVKNPFFLNRIKIIKDDVGYAIDARLLNSTCELTLPNGKKVYDYTLLGLIEGFFVNEEQLKKLLPDSSGTIDYFFETLKEKAQKYYKEGTV
>NC_009437.1|WP_011917897.1|2529172_2529922_-|type-I-B-CRISPR-associated-protein-Cas5
MSQKLLKIKLYQPFANFRKPFSYGIVDSYPLPPPSTVKGWLHNILGAKNGEYYKMAVSICGKFNSIVYDIQRIIKFDRLRKEDSSAPILKDVSARVINDVIYVTNLVDVELCIHVNAEQEILERISHNIFNSYWGLGRKEDLLRVDEVKFFEPQVIEYRKYVKHNLLNIGMYLKTSTAEKLRVDGIRFRLNNRYIKTKDGLRIFTNKKDVVYFENLQHLNPIMSVSDKLLVDDENILIDLIGDDEYESL
>NC_009437.1|WP_011917896.1|2526858_2529192_-|CRISPR-associated-helicase/endonuclease-Cas3
MSMKAYEDIELYAKRFKTEKGYEYQTIYEHTMTLLQNMEKLFKEYREEIKEGFQKLQIDLERFKYLLKLAIIYHDLGKANSNFQRKIRDKTKSNEVPQVRGLSVEVPHNFISIAFVDLEDEIDKGNISPEDFENLLFAIAFSHDRGFDFNYQYFEKYICEDVSKYLNNKTLLPLFKELPSFPTKDEIEKSSNYVYRTIDWLKEVMLKSYTDLYNKNTIMRILLKGFLHRLDHSSSAEVSTEEGKITDFSNKVESYLKEKGNFAGFKEFQLKALDFSTQNVILFAPTGSGKTEFGLNWAGRSKLIYTLPIRVSINAMYERLVRIFGSDKVGILHSDSMIYLLEKYSQSAEDVQELESLFDNVNLARNLSFPIIVTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIVNLNGRFCLMSATVNPLVLKYLGDISEYLQAYSDEELKKCWSHVVSVKPLSILDCVDEIVNCGKQQNVLVICNTVRRSQEVYKAIKESIKNFDDVPVELLHSRFLEGQRRQKEHFILSNQRKNSIVISTQLVEASLDIDYDVLFTELASADSLLQRMGRVYRKRPYEGQKPNVIILTKEPSGIGRVYQKEIVTRTEEFLKKFDGRRITEYDKKELNEYAYDVEALSNTNFMKSFKKAYELLKLGFKADRKIEAQKIFRDVVTVEGIPRKVFEVNEETIRECLKRIGSKSLSPVEKLQLISAVRKYTVTVPVYFFAKGGASEYSKKLGIFILNCDYDDELGLLPPKESEKDDIW
>NC_009437.1|WP_011917895.1|2526313_2526829_-|CRISPR-associated-protein-Cas4
MSEELQDLQDLKFQGIKINYLYVCKRKLWLFSKNITFENRSDKVLLGRILHEYSYPKEETKEVLIDNLIMIDILSDGAVREVKYSSKMKEADIMQVMYYLYYLKQKGIEKQGIINYPKERKKEILQLTPEYEQKVKQALSEIEKITSQIVPPPATKQKICKSCAYFEFCWG
>NC_009437.1|WP_011917894.1|2525327_2526308_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYITSNGRLRRKDNTLYFETETEKRSIDIENIEQIHIFGEVDLNTKALNYISQYGIILHFYNYYGFYAGSFMPRKKNVSGDVVVRQALHYLDREKRIFLAYCFVESAVYHMMRNLRERKEAETFLNAIEDEWENGRFNISSISELMGLEGRVRNIYYSSFNQFLPEDFYMEKREKRPPTNPINALISFGNSLIYSTVLTEIYHTQLDPSISFLHEPSEKRFSLSLDISEIFKPLVVDSVIFKLLNNRQITLEHFDEDLNYCYLNQEGRKIFINELRNKLETTVRHRQLNRNVSYKGYIRLECYKLIKHFIGDQVYSPLKAWW
>NC_009437.1|WP_041722450.1|2524809_2525073_-|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNKVRKILKKYLTWVQNSVFEGEITYGKLEKCKRELFSVIEKDEDSVYFYEMEYKIVCSKKILGQEKNYDSVIL
>NC_009437.1|WP_011916684.1|2520586_2521873_-|IS110-like-element-ISCsa4-family-transposase
MKYTQNEKILQVTERTLVVGVDIAKERHVGRAFDFRGVELGKRIEFENRKEGMEKFLDWANKIMKANGKDNMIVGIEPTGHYWLCFEQYLRENGIKVVLVNPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEMPLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKTAVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVFYAILKKGVKYDGNKMLSDIKREALARTA
>NC_009437.1|WP_011917892.1|2510704_2511835_-|IS481-like-element-ISCsa6-family-transposase
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGIKISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFISLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNFFRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTYRGSKWQKLGSGR
>NC_009437.1|WP_011917901.1|2534293_2534926_+|flavodoxin-family-protein
MKVVAFNGSPRKEGNTYHAIKIVAEELQKEGIEVEIVQVGDKAIRGCLACGTCAKNRNERCVIDDEVNEWIQKMKETNGIILASPVHYASISATMKAFLDRAFYVAGVNGSLFRHKVGAALVAVRRSGGITAFNQLMQYLNYAEMLIATSNYWNVIHGRLPGEVLQDEEGVQIMRVLGKNMAWLLKLVENGKGNLKEPEKEPKIFTNFVR
>NC_009437.1|WP_011917902.1|2535473_2537198_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MAKHTQKGKSAATAAVSDKEKARFVPKNIQAEIKEKIKDTGEKVAKAEGKDKALLQLKLESNKKVDKKKFKKDRSVERNKTSLNRFLSLDKIKSLYSKEIHNKLSHIFEDAVSEVYRILMGLKYIKKAPNYTEIVLKAKIFSTLILMIVILFLINKMPSTYKKAYAVVLNNQIVGYVKDKTEAQNLLTQIKKEVEERHNTDSFILQSKLQLKSIEPGQYRETRVDELKNTIIEKGKVLVKRYAIFVNSKPYFVFENPQTPNNILNKLKKVYYNDKASQAKFLEKVEIKPVYVSPAIKVADEATALTKIMFGKDQVIEYTVKEGDTLWDLSRKYNLAVDDIFASNPGLSEKIVPGQKIKLTKATPLINVMLEKEVEYEEVLPKEVKVIKSGNYYTTQTIVKQEGKDGKAKIRAKIVYMNGLEYDRQIISQQLIQKPVERIVVVGTKKPPAYVATGRFSLPAWGTLTSRFGYRGREFHEGIDLAMPWGSNVYAADGGVVEFTGWSGGYGKLVIINHKNGYQTYYGHLSRILVSPGQKVVKGQLIAKSGSTGRSTGPHLHFEVRKNGVPQNPLRYLR
>NC_009437.1|WP_011917903.1|2537368_2538817_-|beta-xylosidase
MKITINYGKRLGKINKFWAKCVGSCHATTALREDWRKQLKKCRDELGFEYIRFHGWLNDDMSVCFRNDDGLLSFSFFNIDSIIDFLLEIGMKPFIELSFMPEALASGTKTVFHYKGNITPPKSYEEWGQLIEELARHLISRYGKNEVREWFFEVWNEPNLKDFFWAGTMEEYFKLYKYAAFAIKKVDSELRVGGPATAIDAWIPELKDFCTKNGVPIDFISTHQYPTDLAFSTSSNMEEAMAKAKRGELAERVKKALEEAYPLPVYYTEWNNSPSPRDPYHDIPYDAAFIVKTIIDIIDLPLGCYSYWTFTDIFEECGQSSLPFHGGFGLLNIHGIPKPSYRAFQILDKLNGERIEIEFEDKSPTIDCIAVQNEREIILVISNHNVPLSPIDTENIKVVLKGIENCREVFVERIDEYNANPKRVWLEMGSPAYLNREQIEELIKASELKKEKVSWGIVNNNEITFDLSVLPHSVVAVTIKNG
>NC_009437.1|WP_187147302.1|2538850_2539792_-|endo-1,4-beta-xylanase
MMKQQYLLDYEATKASKNGMPVCKFDSCIPALQFCKENGIKMRGHVLVWHNQTPEWFFHKDYDVSKPLVDAATMERRLESYIKQVIEFCQKNYPGVVYCWDVVNEAILDDGSWREINNNWYTIMKEKYVEKAFYYARKYAKKDVALFYNDYNVFLPAKREAIYNLAQKLKEKGLIDGLGLQPTVGLNYPELDSDDIDSFKTTLETFAKLGLQIHITELNFEIKGDESNRTPENLKKQADRYYEMMKLLLKEDTDNGGPCNITCVTVFGICDDYPLYKNFKQCMYLWDKNCNPKPCFYSFLQAGLDWKASLLSK
>NC_009437.1|WP_011917905.1|2539788_2540109_-|hypothetical-protein
MLIVITCIAMVFFFTSCTIQSAIEQKKTVEEILGKIGESEDKTNSRGQPATMKEDEVEDNPLKDVYKDYFLVGAAINGYSVETAAINHPGMAAILKKTLTVQPYLI
>NC_009437.1|WP_011917906.1|2540222_2541023_-|acetylesterase
MAIMQINFYSKMLKKNTTILAILPVDKPDKKFQKDVDSENLKTLYLLHGYAGNYMDWLCGARIVELSMRYNVAVFLPSGENSFYLDDEEKEEYFGEFVGNEIIEFTRSVFPIPQKREKTFIGGLSMGGYGALRNGLKYNKNFVGIIALSSALIIHKIAGIPKDYRNAYASYNYYRRVFGDLNSLIGSDKDINALVTKLKQEKGSIPKIYMACGRDDFLVQENRDLFNFLKNEGIDVVYEEDEGGHDWDFWNKYIANAFEWMSKVSD
>NC_009437.1|WP_041722897.1|2541056_2542052_-|endo-1,4-beta-xylanase
MLNLSLAKTYKDYFKIGAAVTAKDLEGVHRDILLKHFNSLTPENAMKFENIHPEEQRYNFEEVARIKEFAIKNDMKLRGHTFVWHNQTPGWVFLDKNGEEASKELVIERLREHIKTLCERYKDVVYAWDVVNEAVEDKTEKLLRESNWRKIIGDDYIKIAFEIAREYAGDAKLFYNDYNNEMPYKLEKTYKVLKELLERGTPIDGIGIQAHWNIWDKNLVSNLKKAIEVYASLGLEIHITELDISVFEFEDKRTDLFEPTPEMLELQAKVYEDVFAVFREYKDVITSVTLWGISDRHTWKDNFPVKGRKDWPLLFDVNGKPKEALYRILRF
>NC_009437.1|WP_011917908.1|2542106_2543627_-|xylan-1,4-beta-xylosidase
MGEGIVTNIKIEKGKQIGIFPDKWKFCVGSGRIGLALQKEYIDALLYVKKHIDFKYIRAHGLLHDDVGIYREDIIDGNEVSFYNFTYIDRIYDSFLELGIRPFVEIGFMPSKLASGTQTVFYWRGNVTPPKDYGKWERLIKSVVKHFIDRYGEKEVVQWPFEIWNEPNLNVFWKDANQAEYFKLYEVTAKAIKEVNENIKVGGPAICGGSDYWIDDFLHFCYKNKVPVDFLTRHAYTGKPPQYTPHFVYQDVHPIEYMLNEFKSVREKVRNSPFPDLPIHITEFNSSYHPLCPIHDTPFNAAYLARVLSEAGDYVDSFSYWTFSDVFEEADVPRAIFHGGFGLVAFNNIPKPVFHMFTFFNAMGNKILYRDEHILITERENGTIAIVAWNEVMKKEEATDRKYKIEIPVDYNDVFIKQKLIDEENGNPWRTWIQMGRPRYPTKEQIETLREVAKPKISTFRMMAENGYITLEFTLSKNAVVLFEVSKVVDESDTYIGLDDSKIPGY
>NC_009437.1|WP_011917909.1|2543650_2545753_-|endo-1,4-beta-xylanase
MKKRTFKSVTLLAVAIVFLVSGVFLKAFPVMQNAKAQSSSVTVINFEGKDTLTFFAYGNAKIATDQSSAIEGKKSIKVTNRKSIWDSLAIDVKDVLKRGKTWVISSYIKHVGKKPIAFSITALYDDGKGLKYVQLGEKIVMPSKWEKIAVKWKPTLKNPSNLIIAIHPTVDKTTAYNVDSIQVMTEETYLSQAIIYKDTFENNTTNWRPRGEGVKIKLDNSKFHEGNESLYVSGRTAFWHGAKIPIIKYVVPGKRYKFSIWVYHTSMDLKRFSILVQRKMADEAQYRYDWITSKEVAGDGWEEISGSYVVPDNGKIEELEFYIESPDPTLSFWVDDFTISDTMKLQQPNYSLPSLKEKYKNDFKVGVAIGYGELINSIDKQFIKKHFNSITPGNEMKPESLLRGPDKYDFTIADAFVEFATKNNISIRGHTLVWHNQTPDWFFKDSNGNFLKKDELLKRLKKHIYTVVGRYKGKIYAWDVVNEAIDETQPDGYRRSNWYKICGPEYIEKAFIWAHEADPQAKLFYNDYNTEVPQKRMFIYNMIKNMKSKGIPIHGVGLQCHINVDSPSVEEIEETIKLFSTIPGLEIQITELDMSFYQWGSSVYYVEPSREMLLRQAKKYYELFNLFRKYKKIIKSVTFWGLKDDYSWLRGVFNKPDFPLLFDEYYDGKPAFWALIDYSVIPQNINLPAPPAIPKLNTKK
>NC_009437.1|WP_011917910.1|2545768_2549812_-|family-43-glycosylhydrolase
MANKLLRWIKKIVLPAILVICLILSAFVNFQINKAYSSSNQQGGSKLLQNNTISSNPIILSDIPDPDIIRVGNDYYMVSTTMHLTPGVPIMHSTDLVNWRIIGYVYDRLEDNDAHNLKNGMNIYGKGQWAPCIRYYKGKFYVLFGALDTGKTYLFSSKNITGPWERVEFNEYLHDPSLLFDDNGKAYIIYGGSEIRVKELMPDLKAINLKGLNKVIIKSKIDGLEEGSHAYKINGKYYITTIRWEKGGIREECVYRADKIDGPYEGRVVLSDTLGYKNNGVAQGGLIDTPDGKWYAMLFQDHDAVGRVPVLVPVRWENGWPVFGDEKGKVPLKFVKPGQSSFETEVVKSDEFYQEKAESNPRRFEVKRNAEITKDVELVINNNFARGTIGWKGREGAKLEVVSEGNKNIIHVYNRTGPRSGIQQNLTGRVEKGKKYKAVFRVKYVKGPDTKEFILAAKITSNGKESYQELIKGFANKNEWTSISGTFTISQDIETVYLFIQTPVTEKPDKNNDLVDYFVEYVSVKEVLVTQKESEEVAPNGSVLNLTWQWNHNPDNSKWSLLERKGFLRLKTCNVVSDIQQARNTLTQRTLGPKCSGWILMDVRNMKDGDYAGLAAFQKEYGFIGVKKQDKEFYIVMVEKGKEVEYTKLQQSMVYLKIDFDFEIDKAYFYYSYNGINWIKFGSDLTMRYTIPHFMGYRFAIFNFATKQTGGYVDIDFFKFSNKLTGEKTEEDFKVYLKEDIIELRNDIDKNYELTVSLNSLPKGKKATQINILLKFPRELDVFEALVADKRIKNAVVLVEKKGSDQALINIKNIDTEVLDSGNRWIDLVNIKLKQREKLTESTSDEIRIQSLTVEYEKEKINYRSESAVTKVKFVAPKTPVGKIPPNANPLIAHKFGADPAVLVYKNRVYIYLTNDILEYDDNGNIKDNTYSKINKITIISSDDLINWTDHGEIEVAGPNGIAKWATQSWAPSIAYKKINGKDKFFLYFANNASGIGVLTSDTPVGPWEDPIGRPLISRSTPGVEGVVWLFDPAVLVDGDGKAYIYFGGGVPQGQDAMPNTARVMQLGDDMISVVGSAVTIPAPFMFEDSGINKIGNTYYYSYCTNFYSGARPQGSPPAGVIAYMTSKSPMGPWEYKGVILKNPGNFFGVGGNNHHQLFEFNGKWYIAYHAQTLAKDMGVAKGYRSPHINQVEIENGKIKEVIADYRGIAQVKYFDPYKMVEAETFAWCAGISTKKANASNSMCLTGIDSGDWIALSKVDFGNVGPQKFEAMVSNINGKGYIEIKIDSVDGKIIGVVEVQPQDSSSTHWVKVETNVDKVTGVHDVYFVFKGENEKNLFDMDCWKFVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009552	Geobacillus virus E2, complete genome	29856-29891	2	0.944
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	651829-651864	3	0.917
NC_009437_3	3.4\|60340\|36\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	60340-60375	36	MK448748	Streptococcus phage Javan389, complete genome	4410-4445	4	0.889
NC_009437_3	3.4\|60340\|36\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	60340-60375	36	MK448751	Streptococcus phage Javan399, complete genome	4940-4975	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31252-31287	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31234-31269	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27041-27076	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007814	Bacillus phage Fah, complete genome	29636-29671	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29636-29671	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29648-29683	4	0.889
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27005-27040	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27023-27058	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007814	Bacillus phage Fah, complete genome	29642-29677	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29642-29677	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289555	Bacillus anthracis phage W Beta, complete genome	29841-29876	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963371	Bacillus phage Carmel_SA, complete genome	30939-30974	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	27680-27715	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222851	Bacillus anthracis phage Cherry, complete genome	27042-27077	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	27809-27844	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007734	Bacillus phage WBeta, complete genome	29841-29876	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007458	Bacillus phage Gamma, complete genome	27680-27715	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH884510	Exiguobacterium phage vB_EalM-137, complete genome	11751-11786	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28934-28969	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5374-5409	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42282-42317	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1032-1067	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP017848	Escherichia coli strain FMU073332 plasmid pEcoFMU07332d sequence	132018-132053	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009790	Escherichia coli O139:H28 str. E24377A plasmid pETEC_74, complete sequence	28546-28581	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP006000	Escherichia coli B7A plasmid pEB2, complete sequence	35853-35888	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP022913	Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence	62744-62779	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55895-55930	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010126	Escherichia coli strain C8 plasmid A, complete genome	80899-80934	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963370	Bacillus phage Negev_SA, complete genome	30451-30486	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379661-379696	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	401777-401812	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	120-155	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137864-137899	5	0.861
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31210-31245	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31192-31227	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31153-31188	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27035-27070	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27059-27094	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27011-27046	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27017-27052	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007814	Bacillus phage Fah, complete genome	29648-29683	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007814	Bacillus phage Fah, complete genome	29666-29701	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29648-29683	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29666-29701	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29684-29719	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29666-29701	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29702-29737	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	5495-5530	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	227865-227900	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289555	Bacillus anthracis phage W Beta, complete genome	29859-29894	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428481	Staphylococcus phage SN8, complete genome	32243-32278	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963371	Bacillus phage Carmel_SA, complete genome	30957-30992	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	27698-27733	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694393	Marine virus AFVG_250M420, complete genome	10730-10765	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222851	Bacillus anthracis phage Cherry, complete genome	27060-27095	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	27827-27862	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007734	Bacillus phage WBeta, complete genome	29859-29894	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428478	Staphylococcus phage SN13, complete genome	32902-32937	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428479	Staphylococcus phage SN11, complete genome	32180-32215	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KX827368	Staphylococcus phage SpT5, complete genome	21055-21090	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007458	Bacillus phage Gamma, complete genome	27698-27733	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694537	Marine virus AFVG_250M1002, complete genome	2157-2192	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428480	Staphylococcus phage SN10, complete genome	32219-32254	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28925-28960	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28928-28963	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28931-28966	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5362-5397	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5365-5400	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5368-5403	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5371-5406	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42285-42320	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42288-42323	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42291-42326	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	24443-24478	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	24449-24484	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	24455-24490	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1035-1070	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1038-1073	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1041-1076	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1044-1079	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP017848	Escherichia coli strain FMU073332 plasmid pEcoFMU07332d sequence	132015-132050	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009790	Escherichia coli O139:H28 str. E24377A plasmid pETEC_74, complete sequence	28543-28578	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	873-908	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	879-914	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8640-8675	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8634-8669	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8637-8672	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP006000	Escherichia coli B7A plasmid pEB2, complete sequence	35850-35885	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP022913	Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence	62747-62782	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10924-10959	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10909-10944	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10912-10947	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10915-10950	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10918-10953	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10921-10956	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55898-55933	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55901-55936	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55904-55939	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55907-55942	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55910-55945	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP021463	Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence	267299-267334	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP021463	Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence	267305-267340	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010126	Escherichia coli strain C8 plasmid A, complete genome	80896-80931	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	195079-195114	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	195085-195120	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	195091-195126	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	90369-90404	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	90375-90410	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	90381-90416	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	90387-90422	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	61515-61550	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	61521-61556	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	61527-61562	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	61568-61603	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	61574-61609	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	61580-61615	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963370	Bacillus phage Negev_SA, complete genome	30490-30525	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694164	Marine virus AFVG_250M1189, complete genome	46995-47030	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694164	Marine virus AFVG_250M1189, complete genome	46992-47027	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_019544	Deep-sea thermophilic phage D6E, complete genome	34386-34421	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT725776	Bacillus phage vB_BceS-MY192, partial genome	4929-4964	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	5-40	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	41119-41154	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT995479	Bacillus phage BM5, complete genome	34610-34645	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379350-379385	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379353-379388	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379356-379391	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379359-379394	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379619-379654	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379652-379687	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379655-379690	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379658-379693	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379727-379762	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379730-379765	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379733-379768	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379736-379771	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379739-379774	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379742-379777	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379775-379810	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379778-379813	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379781-379816	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379784-379819	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379787-379822	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379790-379825	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379793-379828	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379796-379831	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379799-379834	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379802-379837	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379805-379840	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379808-379843	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041438	Escherichia coli strain STEC005 plasmid pSTEC005, complete sequence	35110-35145	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041436	Escherichia coli strain STEC309 plasmid pSTEC309, complete sequence	47432-47467	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	401774-401809	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP051728	Escherichia coli strain SCU-111 plasmid pSCU-111-1, complete sequence	55656-55691	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041249	Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence	90894-90929	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	88660-88695	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP049202	Escherichia coli strain PapRG-04-4 plasmid pIncFIB, complete sequence	149793-149828	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN304819	Phage 33_17, complete genome	40621-40656	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	123-158	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	126-161	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	129-164	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	132-167	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	135-170	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137867-137902	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137870-137905	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137873-137908	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137876-137911	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137879-137914	6	0.833
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	LC168164	Tenacibaculum phage pT24 DNA, complete genome	227399-227434	6	0.833
NC_009437_11	11.88\|2519048\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519048-2519081	34	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1774767-1774800	6	0.824
NC_009437_3	3.14\|61000\|36\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	61000-61035	36	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	476143-476178	7	0.806
NC_009437_5	5.2\|90770\|31\|NC_009437\|PILER-CR	90770-90800	31	MH447526	Sulfolobus filamentous virus 1 isolate S48, complete genome	30697-30727	7	0.774
NC_009437_5	5.2\|90770\|31\|NC_009437\|PILER-CR	90770-90800	31	MK064562	Sulfolobales Beppu filamentous virus 1 clone A, partial genome	31508-31538	7	0.774
NC_009437_8	8.5\|352049\|38\|NC_009437\|PILER-CR,CRISPRCasFinder,CRT	352049-352086	38	KF296717	Bacillus phage proCM3, complete genome	19417-19454	7	0.816
NC_009437_8	8.5\|352049\|38\|NC_009437\|PILER-CR,CRISPRCasFinder,CRT	352049-352086	38	JX887877	Bacillus phage vB_BtS_BMBtp2, complete genome	24871-24908	7	0.816
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963369	Bacillus phage Tavor_SA, complete genome	31228-31263	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27077-27112	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007814	Bacillus phage Fah, complete genome	29684-29719	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29684-29719	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29720-29755	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289555	Bacillus anthracis phage W Beta, complete genome	29877-29912	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428481	Staphylococcus phage SN8, complete genome	32249-32284	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KY963371	Bacillus phage Carmel_SA, complete genome	30975-31010	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	27716-27751	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222851	Bacillus anthracis phage Cherry, complete genome	27078-27113	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	27845-27880	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007734	Bacillus phage WBeta, complete genome	29877-29912	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428478	Staphylococcus phage SN13, complete genome	32908-32943	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428479	Staphylococcus phage SN11, complete genome	32186-32221	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KX827368	Staphylococcus phage SpT5, complete genome	21061-21096	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007458	Bacillus phage Gamma, complete genome	27716-27751	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MF428480	Staphylococcus phage SN10, complete genome	32225-32260	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH884510	Exiguobacterium phage vB_EalM-137, complete genome	11757-11792	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	172486-172521	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28922-28957	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025882	Escherichia coli strain 503440 plasmid p503440_52, complete sequence	28919-28954	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5359-5394	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025895	Escherichia coli strain 503025 plasmid p503025_52, complete sequence	5356-5391	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42294-42329	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025867	Escherichia coli strain 504211 plasmid p504211_50, complete sequence	42297-42332	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	24461-24496	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1047-1082	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP025871	Escherichia coli strain 503829 plasmid p503829_52, complete sequence	1050-1085	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	169497-169532	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	885-920	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011655	Bacillus cereus AH187 plasmid pAH187_270, complete sequence	105625-105660	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017408	Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence	2831-2866	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8631-8666	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8628-8663	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_010924	Bacillus cereus strain AH187 plasmid pCER270, complete sequence	162034-162069	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP045776	Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence	151349-151384	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP022913	Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence	62750-62785	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP022913	Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence	62753-62788	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10906-10941	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55913-55948	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	55916-55951	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_016792	Bacillus cereus NC7401 plasmid pNCcld, complete sequence	160903-160938	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693000	Marine virus AFVG_117M53, complete genome	13020-13055	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_019544	Deep-sea thermophilic phage D6E, complete genome	34380-34415	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT725776	Bacillus phage vB_BceS-MY192, partial genome	4923-4958	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT725776	Bacillus phage vB_BceS-MY192, partial genome	4917-4952	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	1-34	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	41113-41148	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT995479	Bacillus phage BM5, complete genome	34604-34639	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT995479	Bacillus phage BM5, complete genome	34598-34633	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693221	Marine virus AFVG_25M6, complete genome	2135-2170	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694640	Marine virus AFVG_250M10, complete genome	11052-11087	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379664-379699	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379347-379382	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379551-379586	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379616-379651	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379649-379684	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379724-379759	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379772-379807	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP015353	Bacillus thuringiensis strain MYBT18246 plasmid p120510, complete sequence	114806-114841	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041438	Escherichia coli strain STEC005 plasmid pSTEC005, complete sequence	35104-35139	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	401771-401806	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	31347-31382	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP051728	Escherichia coli strain SCU-111 plasmid pSCU-111-1, complete sequence	55650-55685	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041249	Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence	90891-90926	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	88657-88692	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	88663-88698	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP017721	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence	130736-130771	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK448748	Streptococcus phage Javan389, complete genome	1490-1525	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AF424781	Staphylococcus aureus phage phi 11, complete genome	10034-10069	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN304819	Phage 33_17, complete genome	40711-40746	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_004689	Mycobacterium phage Barnyard, complete genome	58261-58296	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	JN700520	Staphylococcus phage StB12, complete genome	8684-8719	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_007061	Staphylococcus phage 29, complete genome	36474-36509	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_004615	Staphylococcus phage 11, complete genome	10034-10069	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AY954964	Bacteriophage 29, complete genome	36474-36509	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_028915	Staphylococcus phage B236, complete genome	9938-9973	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK284528	Bacillus phage DK3, complete genome	2641-2676	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	117-152	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	138-173	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137861-137896	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137882-137917	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	114-149	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	141-176	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137858-137893	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_030925	Bacillus phage Shbh1, complete genome	137885-137920	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH884508	Bacillus phage vB_BcoS-136, complete genome	33920-33955	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_KT754160	Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence	65259-65294	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	166235-166270	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	166247-166282	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	157478-157513	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	483648-483683	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	324283-324318	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	114661-114696	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	428132-428167	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	428201-428236	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694748	Marine virus AFVG_250M355, complete genome	11540-11575	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693878	Marine virus AFVG_250M440, complete genome	21574-21609	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	38544-38579	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010110	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence	69878-69913	7	0.806
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	297554-297589	7	0.806
NC_009437_10	10.26\|541338\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	541338-541373	36	NZ_KY978631	Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence	72132-72167	7	0.806
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	641553-641586	7	0.794
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	227146-227179	7	0.794
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	984183-984216	7	0.794
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	552150-552183	7	0.794
NC_009437_11	11.84\|2518784\|37\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518784-2518820	37	NZ_CP013379	Burkholderia pseudomultivorans strain SUB-INT23-BP2 plasmid pINT23, complete sequence	62384-62420	7	0.811
NC_009437_2	2.4\|53048\|34\|NC_009437\|CRISPRCasFinder	53048-53081	34	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	671894-671927	8	0.765
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MK820013	Vibrio phage vB_VpaP_MGD2, complete genome	30071-30100	8	0.733
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	KF800937	Vibrio phage AS51, complete genome	13230-13259	8	0.733
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	KY290756	Vibrio phage Vp670, complete genome	23659-23688	8	0.733
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	KF322026	Vibrio phage phi-A318, complete genome	13232-13261	8	0.733
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009552	Geobacillus virus E2, complete genome	29850-29885	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009552	Geobacillus virus E2, complete genome	29862-29897	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH884510	Exiguobacterium phage vB_EalM-137, complete genome	11745-11780	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	196482-196517	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	24437-24472	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	169500-169535	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	867-902	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017408	Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence	2825-2860	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP046408	Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence	8643-8678	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10927-10962	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP021463	Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence	267293-267328	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	90363-90398	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	61509-61544	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	61562-61597	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_019544	Deep-sea thermophilic phage D6E, complete genome	34392-34427	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT725776	Bacillus phage vB_BceS-MY192, partial genome	4935-4970	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	41107-41142	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	11-46	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	41125-41156	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379518-379553	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379548-379583	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	380339-380374	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	81037-81072	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	81058-81093	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP017721	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence	130742-130777	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK448748	Streptococcus phage Javan389, complete genome	1493-1528	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013772	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S34-C80, * SEQUENCING IN PROGRESS *	17195-17230	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN304819	Phage 33_17, complete genome	40639-40674	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	DQ222854	Bacillus anthracis phage Gamma collagen region, complete sequence	1-30	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_KY940428	UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence	129932-129967	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP036355	Bacillus sp. SYJ plasmid unnamed1, complete sequence	119099-119134	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	230161-230196	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_KT754160	Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence	65256-65291	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	65794-65829	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	35060-35095	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	16842-16877	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	19456-19491	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	36744-36779	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_048694	Klebsiella phage vB_Kpn_F48, complete genome	133458-133493	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693307	Marine virus AFVG_25M50, complete genome	37164-37199	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693550	Marine virus AFVG_25M93, complete genome	34614-34649	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693363	Marine virus AFVG_25M19, complete genome	36382-36417	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT997872	Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome	20281-20316	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT997872	Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome	20275-20310	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693023	Marine virus AFVG_117M30, complete genome	47798-47833	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013485	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C27-MedDCM-OCT-S28-C53	11152-11187	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN434092	Klebsiella phage AmPh_EK29, complete genome	132903-132938	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693878	Marine virus AFVG_250M440, complete genome	33194-33229	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693306	Marine virus AFVG_25M45, complete genome	35981-36016	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013757	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S33-C188, * SEQUENCING IN PROGRESS *	852-887	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN781108	Klebsiella phage vB_Kpn_P545, complete genome	132832-132867	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN395284	Klebsiella phage PhiKpNIH-6, complete genome	132931-132966	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693286	Marine virus AFVG_25M92, complete genome	34683-34718	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013758	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, * SEQUENCING IN PROGRESS *	20794-20829	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	76752-76787	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN013081	Klebsiella phage vB_KpnM_Potts1, complete genome	132720-132755	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP014437	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, * SEQUENCING IN PROGRESS *, 5 ordered pieces	16437-16472	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693164	Marine virus AFVG_25M20, complete genome	36758-36793	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010369	Acinetobacter nosocomialis strain 6411 plasmid p6411-89.111kb, complete sequence	58816-58851	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP033536	Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-1, complete sequence	63472-63507	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	CP033532	Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-2, complete sequence	89360-89395	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP027251	Acinetobacter pittii strain WCHAP100020 plasmid p1_100020, complete sequence	69992-70027	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP027247	Acinetobacter pittii strain WCHAP100004 plasmid p1_100004, complete sequence	40654-40689	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP042366	Acinetobacter pittii strain C54 plasmid pC54_002	32092-32127	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP029982	Escherichia coli strain 99-3165 plasmid unnamed3, complete sequence	20470-20505	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP029982	Escherichia coli strain 99-3165 plasmid unnamed3, complete sequence	67761-67796	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	182126-182161	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	74803-74838	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_010404	Acinetobacter baumannii AYE plasmid p3ABAYE, complete sequence	84280-84315	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP043054	Acinetobacter pittii strain AP43 plasmid pAP43-2, complete sequence	62209-62244	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	7569-7604	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK448990	Streptococcus phage Javan584, complete genome	5922-5957	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694613	Marine virus AFVG_250M1003, complete genome	33744-33779	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	GU233956	Bacillus phage 11143, partial sequence	28110-28145	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694458	Marine virus AFVG_250M890, complete genome	136-171	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694458	Marine virus AFVG_250M890, complete genome	37332-37367	8	0.778
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	326865-326900	8	0.778
NC_009437_11	11.88\|2519048\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519048-2519081	34	NZ_CP026950	Mycetocola sp. 449 strain CGMCC 1.16372 plasmid unnamed, complete sequence	18071-18104	8	0.765
NC_009437_5	5.2\|90770\|31\|NC_009437\|PILER-CR	90770-90800	31	NC_047762	Xanthomonas phage XAJ24, complete genome	20208-20238	9	0.71
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	317330-317359	9	0.7
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MH383160	Escherichia phage UB, complete genome	186820-186849	9	0.7
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	343030-343059	9	0.7
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MH494197	Escherichia phage CMSTMSU, complete genome	105379-105408	9	0.7
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	LC494302	Escherichia phage SP27 DNA, complete genome	160254-160283	9	0.7
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MH884510	Exiguobacterium phage vB_EalM-137, complete genome	11739-11774	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_011562	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence	10903-10938	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694640	Marine virus AFVG_250M10, complete genome	11031-11066	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	LR721753	Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence	145260-145295	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	379554-379589	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_010183	Bacillus mycoides KBAB4 plasmid pBWB404, complete sequence	9616-9651	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_017577	Shewanella baltica OS117 plasmid pSBAL11701, complete sequence	88654-88689	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK448748	Streptococcus phage Javan389, complete genome	1496-1531	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK284528	Bacillus phage DK3, complete genome	2620-2655	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013773	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S42-C70, * SEQUENCING IN PROGRESS *	26301-26336	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AJ854042	Acidianus filamentous virus 2, partial genome	4364-4399	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013460	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S40-C18	17098-17133	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ019039	Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome	84445-84480	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013495	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C39-MedDCM-OCT-S27-C61	2433-2468	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP014445	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S35-C62, * SEQUENCING IN PROGRESS *, 4 ordered pieces	28229-28264	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	76749-76784	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	76755-76790	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	967669-967704	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	967672-967707	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	38550-38585	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010110	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence	54318-54353	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP032092	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence	48808-48843	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694558	Marine virus AFVG_250M9, complete genome	11026-11061	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693120	Marine virus AFVG_25M98, complete genome	50008-50043	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694485	Marine virus AFVG_250M19, complete genome	3424-3459	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694392	Marine virus AFVG_250M8, complete genome	28549-28584	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	AP013454	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S33-C36	25462-25497	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP009059	Borreliella afzelii K78 plasmid lp54, complete sequence	2741-2776	9	0.75
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP009067	Borreliella afzelii K78 plasmid lp38, complete sequence	33359-33394	9	0.75
NC_009437_11	11.48\|2516431\|37\|NC_009437\|CRISPRCasFinder,CRT	2516431-2516467	37	MT375524	Pelagibacter phage Gjalp EXVC02, partial genome	3367-3403	9	0.757
NC_009437_11	11.48\|2516431\|37\|NC_009437\|CRISPRCasFinder,CRT	2516431-2516467	37	MT375523	Pelagibacter phage Eyrgjafa EXV, complete genome	31480-31516	9	0.757
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	KP211958	Cyanophage P-TIM40, complete genome	7231-7264	9	0.735
NC_009437_11	11.84\|2518784\|37\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518784-2518820	37	CP020973	Xanthomonas axonopodis pv. phaseoli strain CFBP6546R plasmid pC, complete sequence	68694-68730	9	0.757
NC_009437_11	11.88\|2519048\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519048-2519081	34	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	180054-180087	9	0.735
NC_009437_11	11.88\|2519048\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519048-2519081	34	DQ674738	Aeromonas phage phiO18P, complete genome	30116-30149	9	0.735
NC_009437_1	1.2\|41840\|33\|NC_009437\|PILER-CR	41840-41872	33	NC_003201	Oenococcus oeni plasmid pRS2, complete sequence	2079-2111	10	0.697
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	281009-281038	10	0.667
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	80758-80787	10	0.667
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	NC_027364	Escherichia phage PBECO 4, complete genome	124869-124898	10	0.667
NC_009437_6	6.2\|93255\|30\|NC_009437\|PILER-CR	93255-93284	30	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	103521-103550	10	0.667
NC_009437_9	9.4\|356666\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	356666-356701	36	HM144387	Bacillus phage W.Ph., complete genome	116516-116551	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694537	Marine virus AFVG_250M1002, complete genome	2178-2213	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KJ094022	Listeria phage LP-030-3, complete genome	1-28	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	EU545650	Acidianus filamentous virus 9, complete genome	6501-6536	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_AP018564	Staphylococcus argenteus strain 58113 plasmid p2, complete sequence	68573-68608	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694613	Marine virus AFVG_250M1003, complete genome	33747-33782	10	0.722
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_CP010580	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB76, complete sequence	17342-17377	10	0.722
NC_009437_10	10.22\|541075\|37\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	541075-541111	37	NZ_CP021670	Bacillus licheniformis strain SRCM100141 plasmid pBL141-2 sequence	173470-173506	10	0.73
NC_009437_10	10.22\|541075\|37\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	541075-541111	37	NZ_CP035189	Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence	91421-91457	10	0.73
NC_009437_10	10.22\|541075\|37\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	541075-541111	37	NZ_CP014843	Bacillus licheniformis strain SCDB 14 plasmid pSCDB14, complete sequence	99535-99571	10	0.73
NC_009437_11	11.2\|2513416\|38\|NC_009437\|CRISPRCasFinder,CRT	2513416-2513453	38	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	426105-426142	10	0.737
NC_009437_11	11.88\|2519048\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519048-2519081	34	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1202030-1202063	10	0.706
NC_009437_13	13.1\|2533583\|40\|NC_009437\|CRT	2533583-2533622	40	NC_017406	Borreliella burgdorferi JD1 plasmid JD1 lp28-5, complete sequence	747-786	10	0.75
NC_009437_13	13.1\|2533583\|40\|NC_009437\|CRT	2533583-2533622	40	NC_017415	Borreliella burgdorferi N40 plasmid N40_lp28-5, complete sequence	2615-2654	10	0.75
NC_009437_13	13.1\|2533583\|40\|NC_009437\|CRT	2533583-2533622	40	NZ_CP017214	Borreliella burgdorferi strain B331 plasmid B331_lp28_5, complete sequence	2995-3034	10	0.75
NC_009437_13	13.1\|2533583\|40\|NC_009437\|CRT	2533583-2533622	40	NZ_CP017216	Borreliella burgdorferi strain B331 plasmid B331_lp36, complete sequence	26469-26508	10	0.75
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP019234	Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence	83623-83659	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP053937	Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence	65803-65839	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP018934	Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence	63628-63664	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	155012-155048	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP031075	Bacillus mycoides strain BPN401 plasmid pl37, complete sequence	53-89	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP010087	Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence	50604-50640	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NC_006578	[Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence	44863-44899	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP018936	Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence	6392-6428	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP018936	Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence	82303-82339	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NC_023074	Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence	1497-1533	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP053978	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence	56245-56281	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP009333	Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence	287-323	10	0.73
NC_009437_13	13.6\|2533719\|37\|NC_009437\|CRISPRCasFinder	2533719-2533755	37	NZ_CP018932	Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence	73012-73048	10	0.73
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694640	Marine virus AFVG_250M10, complete genome	14012-14047	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693878	Marine virus AFVG_250M440, complete genome	33200-33235	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694645	Marine virus AFVG_250M761, complete genome	2026-2061	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MK568540	Vibrio phage ValB1 HC, complete genome	32972-33007	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN693860	Marine virus AFVG_250M392, complete genome	40110-40145	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MN694558	Marine virus AFVG_250M9, complete genome	14004-14039	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KP671755	Vibrio phage ValKK3, complete genome	85766-85801	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT919973	Vibrio phage phi-ST2, complete genome	215702-215737	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NC_023568	Vibrio phage VH7D, complete genome	227590-227625	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MT612989	Vibrio phage vB_ValM_R11Z, complete genome	52402-52437	11	0.694
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	MT612988	Vibrio phage vB_ValM_R10Z, complete genome	52938-52973	11	0.694
NC_009437_11	11.73\|2518065\|34\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2518065-2518098	34	KC465899	Pelagibacter phage HTVC008M, complete genome	19017-19050	11	0.676
NC_009437_11	11.99\|2519770\|37\|NC_009437\|CRISPRCasFinder,CRT,PILER-CR	2519770-2519806	37	NZ_AP014818	Geminocystis sp. NIES-3708 plasmid pGM03, complete sequence	1251-1287	11	0.703
NC_009437_7	7.36\|346409\|37\|NC_009437\|PILER-CR,CRISPRCasFinder,CRT	346409-346445	37	NZ_CP032366	Bacillus wiedmannii strain SR52 plasmid unnamed1, complete sequence	27154-27190	12	0.676
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KC465898	Pelagibacter phage HTVC010P, complete genome	24954-24989	12	0.667
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	NZ_KP738729	Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence	56114-56149	12	0.667
NC_009437_9	9.14\|357323\|36\|NC_009437\|CRT,PILER-CR,CRISPRCasFinder	357323-357358	36	KT919972	Vibrio phage phi-Grn1, complete genome	155533-155568	13	0.639

1. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 2, identity: 0.944

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tggggaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
**********.*****************.*******

2. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 3, identity: 0.917

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaggaagaagaagaaaaagaaaaagaagaagacaa	Protospacer
.*.****************************** **

3. spacer 3.4|60340|36|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to MK448748 (Streptococcus phage Javan389, complete genome) position: , mismatch: 4, identity: 0.889

aaggaaggctaaaggacttacacaagaagagatggc	CRISPR spacer
aaggaaagctaaaggacttacacaagaagaattagc	Protospacer
******.***********************. *.**

4. spacer 3.4|60340|36|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to MK448751 (Streptococcus phage Javan399, complete genome) position: , mismatch: 4, identity: 0.889

aaggaaggctaaaggacttacacaagaagagatggc	CRISPR spacer
aaggaaagctaaaggacttacacaagaagaatttgc	Protospacer
******.***********************. * **

5. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaagaaaaagaaaaagaagaagaaaa	Protospacer
 *...*******************************

6. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaaaaagaaaaagaaaaagaagaagaaaa	Protospacer
 *..******.*************************

7. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..************************.*******

8. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaccaagaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
**.  ***********************.*******

9. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaccaagaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
**.  ***********************.*******

10. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 4, identity: 0.889

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaccaagaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
**.  ***********************.*******

11. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccaagaagaagaagaagaagaaaaagaagaagaaaa	Protospacer
. ..************.*******************

12. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaagaaaaagaagaagaagaagaaaa	Protospacer
 *...*****************.*************

13. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..******.*****************.*******

14. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..******.*****************.*******

15. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

16. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963371 (Bacillus phage Carmel_SA, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaagaacaaaa	Protospacer
 *..*** *********************** ****

17. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

18. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

19. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

20. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

21. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaacaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *..*** ********************.*******

22. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH884510 (Exiguobacterium phage vB_EalM-137, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaaaaagaagaagaaaaagaagaagaaaa	Protospacer
 *..******.*****.*******************

23. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

24. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

25. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

26. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

27. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017848 (Escherichia coli strain FMU073332 plasmid pEcoFMU07332d sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaca	Protospacer
 *.*************.*****.*********** *

28. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009790 (Escherichia coli O139:H28 str. E24377A plasmid pETEC_74, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaca	Protospacer
 *.*************.*****.*********** *

29. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006000 (Escherichia coli B7A plasmid pEB2, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaca	Protospacer
 *.*************.*****.*********** *

30. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022913 (Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

31. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*************.*****.***********.*

32. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010126 (Escherichia coli strain C8 plasmid A, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaggaagaagaagaagaagaagaagaagaagaaca	Protospacer
 *.*************.*****.*********** *

33. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaccaagaagaagaaaaagaacaaaaagaagaaaa	Protospacer
**.  ***************** **.**********

34. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
**..************.*****.***********.*

35. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgacgaagaagaagaagaagaagaagaagaagaaga	Protospacer
**. ************.*****.***********.*

36. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
**..************.*****.***********.*

37. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 5, identity: 0.861

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
**..************.*****.***********.*

38. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaacagaagaagaaaa	Protospacer
  ...****************** ************

39. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaacaaaaacaaaaagaagaagaaaa	Protospacer
 *...******** ***** ****************

40. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaccaagaagaagaaaaagaacaaaaagaagaaca	Protospacer
**.  ***************** **.******** *

41. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaagaagaagaaaaagaaaaagaaaa	Protospacer
 *...***********.***********.*******

42. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

43. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaaaaagaagaagaaaaagaaga	Protospacer
 *..******************.*****.*****.*

44. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaaaaagaagaagaaaaagaagaagaaga	Protospacer
 *..******.*****.*****************.*

45. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

46. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

47. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

48. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

49. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...***********************.*******

50. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

51. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

52. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaggaagaagaaaaagaaaaagaagaagaagg	Protospacer
 *. **.***************************..

53. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaggaagaagaaaaagaaaaagaagaagaagg	Protospacer
 *. **.***************************..

54. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

55. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428481 (Staphylococcus phage SN8, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaaaa	Protospacer
.*. . **********.*******************

56. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963371 (Bacillus phage Carmel_SA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaacaaaaacaaaaagaagaagaaaa	Protospacer
 *...******** ***** ****************

57. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

58. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694393 (Marine virus AFVG_250M420, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagaagaaaaacaaaaagaaaaagaagaagaaaa	Protospacer
 ...******.** **********************

59. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

60. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

61. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

62. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428478 (Staphylococcus phage SN13, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaaaa	Protospacer
.*. . **********.*******************

63. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428479 (Staphylococcus phage SN11, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaaaa	Protospacer
.*. . **********.*******************

64. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KX827368 (Staphylococcus phage SpT5, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaaaa	Protospacer
.*. . **********.*******************

65. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaacaaaaagaagaagaaaa	Protospacer
 *...*****.******** ****************

66. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694537 (Marine virus AFVG_250M1002, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagaagaagaattaaaagaaaaagaagaagaaaa	Protospacer
 ...*********  *********************

67. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428480 (Staphylococcus phage SN10, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaaaa	Protospacer
.*. . **********.*******************

68. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

69. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

70. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

71. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

72. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

73. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

74. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

75. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

76. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

77. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

78. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

79. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

80. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

81. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

82. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

83. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

84. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

85. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017848 (Escherichia coli strain FMU073332 plasmid pEcoFMU07332d sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   *************.*****.*********** *

86. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009790 (Escherichia coli O139:H28 str. E24377A plasmid pETEC_74, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   *************.*****.*********** *

87. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

88. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

89. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
caaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
...*************.*****.***********.*

90. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

91. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

92. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006000 (Escherichia coli B7A plasmid pEB2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   *************.*****.*********** *

93. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022913 (Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

94. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaggaagaagaagaagaagaagaagaagaagaaga	Protospacer
  .*************.*****.***********.*

95. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

96. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

97. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

98. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

99. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

100. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
   *************.*****.***********.*

101. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

102. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

103. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

104. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

105. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021463 (Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

106. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021463 (Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 * ..*****.*****************.*******

107. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010126 (Escherichia coli strain C8 plasmid A, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   *************.*****.*********** *

108. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

109. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

110. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 * ..*****.*****************.*******

111. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

112. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

113. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

114. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 * ..*****.*****************.*******

115. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

116. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

117. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 * ..*****.*****************.*******

118. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

119. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

120. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 * ..*****.*****************.*******

121. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaacaaaaacaaaaagaagaagaaaa	Protospacer
 *...******** ***** ****************

122. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694164 (Marine virus AFVG_250M1189, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gaaggaagaagaagaagaagaagaagaagaagaaca	Protospacer
 ..*************.*****.*********** *

123. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694164 (Marine virus AFVG_250M1189, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaagaagaagaagaagaagaagaagaagaacattt	Protospacer
   *************.*****.*********** *

124. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

125. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

126. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

127. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

128. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT995479 (Bacillus phage BM5, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*****.*****************.*******

129. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

130. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

131. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
.*..************.*****.***********.*

132. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *. ************.*****.***********.*

133. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *. ************.*****.***********.*

134. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

135. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

136. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

137. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

138. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

139. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

140. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

141. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
.*..************.*****.***********.*

142. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *. ************.*****.***********.*

143. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

144. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

145. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

146. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

147. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

148. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

149. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

150. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

151. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

152. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

153. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
.*..************.*****.***********.*

154. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agacgaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *. ************.*****.***********.*

155. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041438 (Escherichia coli strain STEC005 plasmid pSTEC005, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaggaaaaagaaaaagaaaaagaagaagaaga	Protospacer
 *..**.***.***********************.*

156. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041436 (Escherichia coli strain STEC309 plasmid pSTEC309, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaggaagaggaaaaagaaaaagaagaagaaga	Protospacer
 *..**.*****.*********************.*

157. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
.*..************.*****.***********.*

158. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP051728 (Escherichia coli strain SCU-111 plasmid pSCU-111-1, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaggaaaaagaaaaagaaaaagaagaagaaga	Protospacer
 *..**.***.***********************.*

159. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041249 (Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaagaagaagaagaagaagaagaagaagaagagga	Protospacer
**..************.*****.**********..*

160. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017577 (Shewanella baltica OS117 plasmid pSBAL11701, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agcagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 * .************.*****.***********.*

161. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049202 (Escherichia coli strain PapRG-04-4 plasmid pIncFIB, complete sequence) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaggaagaggaaaaagaaaaagaagaagaaga	Protospacer
 *..**.*****.*********************.*

162. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN304819 (Phage 33_17, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaaaaagaagaaaaagaaaaagaagaaaaaga	Protospacer
 *..***.***********************.**.*

163. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

164. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

165. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

166. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

167. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

168. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

169. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

170. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

171. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

172. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaagaagaagaagaagaagaagaagaagaagaaga	Protospacer
 *..************.*****.***********.*

173. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 6, identity: 0.833

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aggataagaataagaaaaagaagaagaagaagaaga	Protospacer
 **. ***** ***********.***********.*

174. spacer 11.88|2519048|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.824

ttgcctc--ctccaacgtcaccggctccaccagcgg	CRISPR spacer
--gccgcagcgccatcgtcaccggctccacaagcgg	Protospacer
  *** *  * *** *************** *****

175. spacer 3.14|61000|36|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

cagatataatttttaaaatttcttctcgcatttcat	CRISPR spacer
ctcttagaatttttaaaatttcttcacgcattttag	Protospacer
*   ** ****************** *******.*

176. spacer 5.2|90770|31|NC_009437|PILER-CR matches to MH447526 (Sulfolobus filamentous virus 1 isolate S48, complete genome) position: , mismatch: 7, identity: 0.774

tttagacg-ctgaagaggaaagcaaagaagaa	CRISPR spacer
-aaaaatgtctgaagaggaaaaccaagaagaa	Protospacer
   *.*.* ************.* ********

177. spacer 5.2|90770|31|NC_009437|PILER-CR matches to MK064562 (Sulfolobales Beppu filamentous virus 1 clone A, partial genome) position: , mismatch: 7, identity: 0.774

tttagacg-ctgaagaggaaagcaaagaagaa	CRISPR spacer
-aaaaatgtctgaagaggaaaaccaagaagaa	Protospacer
   *.*.* ************.* ********

178. spacer 8.5|352049|38|NC_009437|PILER-CR,CRISPRCasFinder,CRT matches to KF296717 (Bacillus phage proCM3, complete genome) position: , mismatch: 7, identity: 0.816

agcatcgatattgcttctttgagctgctcaaataccga	CRISPR spacer
aatatctccattgcttcttttagctgttcaaataccga	Protospacer
*..***  .*********** *****.***********

179. spacer 8.5|352049|38|NC_009437|PILER-CR,CRISPRCasFinder,CRT matches to JX887877 (Bacillus phage vB_BtS_BMBtp2, complete genome) position: , mismatch: 7, identity: 0.816

agcatcgatattgcttctttgagctgctcaaataccga	CRISPR spacer
aatatctccattgcttcttttagctgttcaaataccga	Protospacer
*..***  .*********** *****.***********

180. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaacagaagaagaaaaagaaaaagaaaaagaaga	Protospacer
 *... **********************.*****.*

181. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

182. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

183. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

184. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

185. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

186. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428481 (Staphylococcus phage SN8, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaaaaagaagaagaaaaagaagt	Protospacer
      **********.*******************

187. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KY963371 (Bacillus phage Carmel_SA, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

188. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

189. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

190. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

191. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

192. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428478 (Staphylococcus phage SN13, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaaaaagaagaagaaaaagaagt	Protospacer
      **********.*******************

193. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428479 (Staphylococcus phage SN11, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaaaaagaagaagaaaaagaagt	Protospacer
      **********.*******************

194. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KX827368 (Staphylococcus phage SpT5, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaaaaagaagaagaaaaagaagt	Protospacer
      **********.*******************

195. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaagaagaaaaagaaccagaagaagaaaa	Protospacer
  ...*****************  ************

196. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MF428480 (Staphylococcus phage SN10, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaaaaagaagaagaaaaagaagt	Protospacer
      **********.*******************

197. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH884510 (Exiguobacterium phage vB_EalM-137, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaagaaaaagaagaagaaaaagaaca	Protospacer
 *...*****************.*****.***** *

198. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccaaagagaagaagaaaaagaaaaagaagaagtaaa	Protospacer
. ....************************** ***

199. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

200. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025882 (Escherichia coli strain 503440 plasmid p503440_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

201. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

202. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025895 (Escherichia coli strain 503025 plasmid p503025_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

203. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

204. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025867 (Escherichia coli strain 504211 plasmid p504211_50, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

205. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...*****.*****************.*******

206. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

207. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025871 (Escherichia coli strain 503829 plasmid p503829_52, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

208. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggacgaagaagaagaagaagaagaagaagaagaagc	Protospacer
   *** *********.*****.***********.*

209. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
atcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
   ..*****.*****************.*******

210. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagaaaaagaagaagagac	Protospacer
  ..**** ************************.*

211. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
atcaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
   ..*****.*****************.*******

212. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaat	Protospacer
   .************.*****.***********.*

213. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaaatcag	Protospacer
   .************.*****.************

214. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagaaaaagaagaagagac	Protospacer
  ..**** ************************.*

215. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagaaaaagaagaagagac	Protospacer
  ..**** ************************.*

216. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022913 (Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

217. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022913 (Escherichia coli O6:H16 strain 2011EL-1370-2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

218. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagatta	Protospacer
   .************.*****.***********.*

219. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaaca	Protospacer
   .************.*****.***********.*

220. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   .************.*****.*********** *

221. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagaaaaagaagaagagac	Protospacer
  ..**** ************************.*

222. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693000 (Marine virus AFVG_117M53, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acacaaagaaaaagaaaaagaaaaaaaagaagaaaa	Protospacer
  . .*****.**************.**********

223. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aagtggggaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 .* *..***.*****************.*******

224. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...*****.*****************.*******

225. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acgtggacaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  * *.* **.*****************.*******

226. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
--aaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...*****.*****************.*******

227. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gcaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...*****.*****************.*******

228. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT995479 (Bacillus phage BM5, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaaaaagaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ...*****.*****************.*******

229. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT995479 (Bacillus phage BM5, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acgtggacaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  * *.* **.*****************.*******

230. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693221 (Marine virus AFVG_25M6, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaagaaaaagaaaaagaagaaaaaaa	Protospacer
. . .* ************************.****

231. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694640 (Marine virus AFVG_250M10, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaataagaagaagaaaaaaaataagaagaagaaaa	Protospacer
 ... **************.** *************

232. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agatgaagaagaagaagaagaagaagaagaagaaga---	Protospacer
   **..************.*****.**********

233. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagacga	Protospacer
   .************.*****.***********.*

234. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aagaaaagaagaagaagaagaagaagaagaagaaga	Protospacer
 .*..***********.*****.***********.*

235. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaagaagaagaagaagaagaagaagaagaagatga	Protospacer
.*..************.*****.********** .*

236. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagacga	Protospacer
   .************.*****.***********.*

237. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagacga	Protospacer
   .************.*****.***********.*

238. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagacga	Protospacer
   .************.*****.***********.*

239. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015353 (Bacillus thuringiensis strain MYBT18246 plasmid p120510, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ttatgaaaaagaagaaaaagaaaaagaaaaagaatc	Protospacer
* . ***.********************.*****

240. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041438 (Escherichia coli strain STEC005 plasmid pSTEC005, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggaaaaagaaaaagaaaaagaagaagaagaagaaga	Protospacer
 *...*****.***********.***********.*

241. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagagga	Protospacer
   .************.*****.***********.*

242. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaata	Protospacer
.*. . **********.***************** *

243. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP051728 (Escherichia coli strain SCU-111 plasmid pSCU-111-1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggaaaaagaaaaagaaaaagaagaagaagaagaaga	Protospacer
 *...*****.***********.***********.*

244. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041249 (Raoultella electrica strain DSM 102253 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.806

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agatgaagaagaagaagaagaagaagaagaagaaga---	Protospacer
   **..************.*****.**********

245. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017577 (Shewanella baltica OS117 plasmid pSBAL11701, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaact	Protospacer
   .************.*****.***********.*

246. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017577 (Shewanella baltica OS117 plasmid pSBAL11701, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tttagcagaagaagaagaagaagaagaagaagaaga	Protospacer
*  .* **********.*****.***********.*

247. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017721 (Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---gaaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   *.***********.*****.*********** *

248. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK448748 (Streptococcus phage Javan389, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggagctagaagaagaagaagaagaagaagaagaaga	Protospacer
 *.*  **********.*****.***********.*

249. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AF424781 (Staphylococcus aureus phage phi 11, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaagagaagaagaaaa	Protospacer
.*. . **********.******.************

250. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN304819 (Phage 33_17, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagaaaaagaagaaaaagaaaaagaagaaaaaga	Protospacer
 ...***.***********************.**.*

251. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_004689 (Mycobacterium phage Barnyard, complete genome) position: , mismatch: 7, identity: 0.806

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ttgtgggcaagaagaagaagaagaagaagaagaagg---	Protospacer
   **** ***********.*****.*********.

252. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaaaagaagaagaata	Protospacer
.*. . **********.***************** *

253. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_007061 (Staphylococcus phage 29, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaagagaagaagaaaa	Protospacer
.*. . **********.******.************

254. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_004615 (Staphylococcus phage 11, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaagagaagaagaaaa	Protospacer
.*. . **********.******.************

255. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AY954964 (Bacteriophage 29, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaagagaagaagaaaa	Protospacer
.*. . **********.******.************

256. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_028915 (Staphylococcus phage B236, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgatacagaagaagaagaagaaagagaagaagaaaa	Protospacer
.*. . **********.******.************

257. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK284528 (Bacillus phage DK3, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aggattaaaagaagaaaaagaagaaaaagaagaaaa	Protospacer
 **.  *.**************.**.**********

258. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tcctgaagaagaagaagaagaagaagaagaagaaga---	Protospacer
   **..************.*****.**********

259. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaata	Protospacer
   .************.*****.***********.*

260. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tcctgaagaagaagaagaagaagaagaagaagaaga---	Protospacer
   **..************.*****.**********

261. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaagaata	Protospacer
   .************.*****.***********.*

262. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tggtcctgaagaagaagaagaagaagaagaagaaga	Protospacer
***    *********.*****.***********.*

263. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaatagag	Protospacer
   .************.*****.*********** *

264. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tggtcctgaagaagaagaagaagaagaagaagaaga	Protospacer
***    *********.*****.***********.*

265. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaagaagaagaagaagaagaagaagaagaatagag	Protospacer
   .************.*****.*********** *

266. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
attagaagaagaagcaaaagaaaaagaagaacaata	Protospacer
   .********** **************** ** *

267. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KT754160 (Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggaaaaagaagaagaagaagaagaagaagaagaaca	Protospacer
   ****.********.*****.***********.*

268. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaagaaaaagaaaaagaacaacaaca	Protospacer
 *...*********************** ** ** *

269. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aggaagaaaagaagaaaaagaagaagaaaaagaaaa	Protospacer
 **...*.**************.*****.*******

270. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgccgaagaaatagaaaaagaaaaagaagaagatat	Protospacer
.*  ******. ********************* *

271. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agtagaagaaaaagaaaaagagaaagaagaagagac	Protospacer
 * .******.**********.***********.*

272. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agtagaagaaaaagaaaaagagaaagaagaagagac	Protospacer
 * .******.**********.***********.*

273. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agtagaagaaaaagaaaaagagaaagaagaagagac	Protospacer
 * .******.**********.***********.*

274. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggacgaagaagaagaagaagaagaagaagaagacga	Protospacer
   *** *********.*****.***********.*

275. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---ggacgaagaagaagaagaagaagaagaagaagacga	Protospacer
   *** *********.*****.***********.*

276. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694748 (Marine virus AFVG_250M355, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggaaaaagaaaaagaaaaagaaaaataagaagaaga	Protospacer
 *...*****.************** ********.*

277. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693878 (Marine virus AFVG_250M440, complete genome) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaaagaagaaaaaaaagaataagaagaagaaga	Protospacer
 *...********.******** ***********.*

278. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tttagcaaaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
*  .* *.**.*****************.*******

279. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010110 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
taaagataaagaaggaaaagaaaaagaaaaagaaaa	Protospacer
*...** .******.*************.*******

280. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 7, identity: 0.806

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tagagaagaagtagaaaaagtaaaagaagaacgtaa	Protospacer
*.*.******* ******** ********** . **

281. spacer 10.26|541338|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KY978631 (Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence) position: , mismatch: 7, identity: 0.806

aagggggtgttggaaaaactactattgcacttgcac	CRISPR spacer
aaggtggtgttggaaaaaccactattgctgtaggaa	Protospacer
**** **************.********  * * *

282. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.794

tatgccccgatataaaggtgagcctacaagtatg	CRISPR spacer
tatagcccgatataaaggtgagccttttggaatg	Protospacer
***. ******************** . .* ***

283. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.794

tatgccccgatataaaggtgagcctacaagtatg	CRISPR spacer
tatagcccgatataaaggtgagccttttggaatg	Protospacer
***. ******************** . .* ***

284. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.794

tatgccccgatataaaggtgagcctacaagtatg	CRISPR spacer
tatagcccgatataaaggtgagccttttggaatg	Protospacer
***. ******************** . .* ***

285. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.794

tatgccccgatataaaggtgagcctacaagtatg	CRISPR spacer
tatagcccgatataaaggtgagccttttggaatg	Protospacer
***. ******************** . .* ***

286. spacer 11.84|2518784|37|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013379 (Burkholderia pseudomultivorans strain SUB-INT23-BP2 plasmid pINT23, complete sequence) position: , mismatch: 7, identity: 0.811

aaccgtttatgccgcgaaagcccttgacttggtggaa	CRISPR spacer
caccgtttatgccgcgaaagcccttgaaggagtgggc	Protospacer
 **************************   .****.

287. spacer 2.4|53048|34|NC_009437|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.765

atgtatatgaagtaggacaagaattggaaagaga	CRISPR spacer
aagaatatgaagtaggacaggaattagaactaag	Protospacer
* * ***************.*****.***  *..

288. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MK820013 (Vibrio phage vB_VpaP_MGD2, complete genome) position: , mismatch: 8, identity: 0.733

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
ttaattaaagcttattaagctcttcaattg	Protospacer
 ***** *********** *****   *.

289. spacer 6.2|93255|30|NC_009437|PILER-CR matches to KF800937 (Vibrio phage AS51, complete genome) position: , mismatch: 8, identity: 0.733

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
ttaattaaagcttattaagctcttcaattg	Protospacer
 ***** *********** *****   *.

290. spacer 6.2|93255|30|NC_009437|PILER-CR matches to KY290756 (Vibrio phage Vp670, complete genome) position: , mismatch: 8, identity: 0.733

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
ttaattaaagcttattaagctcttcaattg	Protospacer
 ***** *********** *****   *.

291. spacer 6.2|93255|30|NC_009437|PILER-CR matches to KF322026 (Vibrio phage phi-A318, complete genome) position: , mismatch: 8, identity: 0.733

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
ttaattaaagcttattaagctcttcaattg	Protospacer
 ***** *********** *****   *.

292. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 8, identity: 0.778

------tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agactatggggaagaaaaagaaaaagaaaaagaaaa------	Protospacer
      **********.*****************.*

293. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaatatca	Protospacer
      ****.*****************.*******

294. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH884510 (Exiguobacterium phage vB_EalM-137, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gcaaaaagaagaagaaaaagaagaagaaaaagaaga	Protospacer
  ...*****************.*****.*****.*

295. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acgcgccgaagaagaaaaagaaaaagaaaaagtaat	Protospacer
  * *  *********************.*** **

296. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaaaagac	Protospacer
      ****.*****************.*******

297. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---cgaagaagaagaagaagaagaagaagaagaagcctt	Protospacer
    ************.*****.***********.

298. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaagggat	Protospacer
      ****.*****************.*******

299. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaagggat	Protospacer
      ****.*****************.*******

300. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046408 (Aeromonas veronii strain A8-AHP plasmid pA8AHP1, complete sequence) position: , mismatch: 8, identity: 0.778

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tcgcaaggaagaagaagaagaagaagaagaagaaga---	Protospacer
   ...*************.*****.**********

301. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaacaggaagaagaagaagaagaagaagaagaaga	Protospacer
 *.. *.*********.*****.***********.*

302. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021463 (Salmonella enterica subsp. enterica serovar Typhimurium strain UGA14 plasmid pUGA14_1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaaggagt	Protospacer
      ****.*****************.*******

303. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaaggagt	Protospacer
      ****.*****************.*******

304. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaaggagt	Protospacer
      ****.*****************.*******

305. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaaggagt	Protospacer
      ****.*****************.*******

306. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaatatca	Protospacer
      ****.*****************.*******

307. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaagatac	Protospacer
      ****.*****************.*******

308. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaatcgcaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
**..  . **.*****************.*******

309. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaagcagt	Protospacer
      ****.*****************.*******

310. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa--	CRISPR spacer
------agaaaaagaaaaagaaaaagaaaaagaaaaag	Protospacer
      ****.*****************.*******

311. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agacgaagaagaagaagaagaagaagaagaagacga	Protospacer
   .** *********.*****.***********.*

312. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---aaaagaagaagaagaagaagaagaagaagaagacga	Protospacer
   ..***********.*****.***********.*

313. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaacgaagaagacgaagaagaaaaagaagaagagga	Protospacer
 .. ******** ***.****************..*

314. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgactgaagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . *.  ***************.**.**********

315. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaaaaagaagaaaaagaagaaaaagaagaaataat	Protospacer
   .***.**************.**.*********

316. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017721 (Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence) position: , mismatch: 8, identity: 0.778

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ggaacggaaagaagaagaagaagaagaagaagaaga---	Protospacer
     **.***********.*****.**********

317. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK448748 (Streptococcus phage Javan389, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---gctagaagaagaagaagaagaagaagaagaagaact	Protospacer
   *  **********.*****.***********.*

318. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013772 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S34-C80, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ctaaaaagaaaaagaaaaataaaaagaagaagaaat	Protospacer
. ...*****.******** ***************

319. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN304819 (Phage 33_17, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaacaaagaagaaaaagaagaaaaagaagaaaa	Protospacer
 *...* .**************.**.**********

320. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to DQ222854 (Bacillus anthracis phage Gamma collagen region, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
------agaagaagaaaaagaaccagaagaagaaaa	Protospacer
      ****************  ************

321. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KY940428 (UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

322. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

323. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tcactctgaagaagaaaaagagaaagaagaaaaaaa	Protospacer
* .    **************.*********.****

324. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KT754160 (Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---aaaagaagaagaagaagaagaagaagaagaacagta	Protospacer
   ..***********.*****.*********** *

325. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

326. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

327. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

328. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acaagaagtagaagaaaaagagaaagaagaagagac	Protospacer
  ..**** ************.***********.*

329. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

330. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_048694 (Klebsiella phage vB_Kpn_F48, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagtcgaagaagaaaaagaaaaagctgaagaaaa	Protospacer
 ...*  *******************  ********

331. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693307 (Marine virus AFVG_25M50, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaagaaaaagaaaaagaagaaaaaga	Protospacer
. . .* ************************.**.*

332. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ctacaatgaagaaaaaaaagaaaaagaagaaaaaaa	Protospacer
. . .* ******.*****************.****

333. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693363 (Marine virus AFVG_25M19, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaagaaaaagaaaaagaagaaaaaga	Protospacer
. . .* ************************.**.*

334. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT997872 (Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
caaataagaaaaagaaaaagaaaaagaagaaaaaga	Protospacer
.... *****.********************.**.*

335. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT997872 (Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ttgatacaaataagaaaaagaaaaagaaaaagaaga	Protospacer
* *. * .** *****************.*****.*

336. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693023 (Marine virus AFVG_117M30, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tgaaaaagaagaaaaagaagaaaaagaagaaacaag	Protospacer
**...********.**.**************. **.

337. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013485 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C27-MedDCM-OCT-S28-C53) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aacctaagaagaaaaaaaagaaaaagaaaaagaata	Protospacer
 .   ********.**************.***** *

338. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN434092 (Klebsiella phage AmPh_EK29, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagtcgaagaagaaaaagaaaaagctgaagaaaa	Protospacer
 ...*  *******************  ********

339. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693878 (Marine virus AFVG_250M440, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ttaacaagaaaaagaaaaagaaaaagaagaataacg	Protospacer
* .. *****.******************** ** .

340. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693306 (Marine virus AFVG_25M45, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaagaaaaagaaaaagaagaaaaaga	Protospacer
. . .* ************************.**.*

341. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013757 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S33-C188, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aacctaagaagaaaaaaaagaaaaagaaaaagaata	Protospacer
 .   ********.**************.***** *

342. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN781108 (Klebsiella phage vB_Kpn_P545, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagtcgaagaagaaaaagaaaaagctgaagaaaa	Protospacer
 ...*  *******************  ********

343. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN395284 (Klebsiella phage PhiKpNIH-6, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagtcgaagaagaaaaagaaaaagctgaagaaaa	Protospacer
 ...*  *******************  ********

344. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaaaaaaaagaaaaagaagaaaaaaa	Protospacer
. . .* ******.*****************.****

345. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013758 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aacctaagaagaaaaaaaagaaaaagaaaaagaata	Protospacer
 .   ********.**************.***** *

346. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tcacaaagaagaagaagaagaagaagaagaagaagc	Protospacer
* . .***********.*****.***********.

347. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN013081 (Klebsiella phage vB_KpnM_Potts1, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagtcgaagaagaaaaagaaaaagctgaagaaaa	Protospacer
 ...*  *******************  ********

348. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP014437 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aacctaagaagaaaaaaaagaaaaagaaaaagaata	Protospacer
 .   ********.**************.***** *

349. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693164 (Marine virus AFVG_25M20, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ccacaatgaagaagaaaaagaaaaagaagaaaaaga	Protospacer
. . .* ************************.**.*

350. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010369 (Acinetobacter nosocomialis strain 6411 plasmid p6411-89.111kb, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

351. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP033536 (Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

352. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to CP033532 (Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

353. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027251 (Acinetobacter pittii strain WCHAP100020 plasmid p1_100020, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

354. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027247 (Acinetobacter pittii strain WCHAP100004 plasmid p1_100004, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

355. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042366 (Acinetobacter pittii strain C54 plasmid pC54_002) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

356. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029982 (Escherichia coli strain 99-3165 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaggaagaagaagaagaagaagaagaagaacagta	Protospacer
   .**.*********.*****.*********** *

357. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029982 (Escherichia coli strain 99-3165 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaggaagaagaagaagaagaagaagaagaacagta	Protospacer
   .**.*********.*****.*********** *

358. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acagaaagaaaaagaaaaagagaaagaagaagagac	Protospacer
  .*.*****.**********.***********.*

359. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agaaaagaaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 *...*..**.*****************.*******

360. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_010404 (Acinetobacter baumannii AYE plasmid p3ABAYE, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

361. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043054 (Acinetobacter pittii strain AP43 plasmid pAP43-2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gatgtatgcagaagaaaaagaagaaaaagaagaaaa	Protospacer
 . * * * *************.**.**********

362. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acagaaagaaaaagaaaaagagaaagaagaagagac	Protospacer
  .*.*****.**********.***********.*

363. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK448990 (Streptococcus phage Javan584, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agataaagaagaagaaatagataaagaagaagatat	Protospacer
 *. .************ *** *********** *

364. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694613 (Marine virus AFVG_250M1003, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tttcgaagaagaagaagaagaagaagaagaaatcaa	Protospacer
*   ************.*****.********.  **

365. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to GU233956 (Bacillus phage 11143, partial sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aagtgggcaaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
 .* *.. **.*****************.*******

366. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694458 (Marine virus AFVG_250M890, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aagaaaagaagaagacaaagaagaagaagaagatga	Protospacer
 .*..********** ******.********** .*

367. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694458 (Marine virus AFVG_250M890, complete genome) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aagaaaagaagaagacaaagaagaagaagaagatga	Protospacer
 .*..********** ******.********** .*

368. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 8, identity: 0.778

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aggagcagaagaagaaaaagaaaaagacctctaaaa	Protospacer
 **.* *********************     ****

369. spacer 11.88|2519048|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026950 (Mycetocola sp. 449 strain CGMCC 1.16372 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcctcctc-----caacgtcaccggctccaccagcgg	CRISPR spacer
-----tccgcaggaacaacggcagcggctccaccagcgg	Protospacer
     *** *     ***** ** ***************

370. spacer 5.2|90770|31|NC_009437|PILER-CR matches to NC_047762 (Xanthomonas phage XAJ24, complete genome) position: , mismatch: 9, identity: 0.71

tttagacgctgaagaggaaagcaaagaagaa	CRISPR spacer
ggctggagctgaagaagaacgcaaagaagac	Protospacer
  . *. ********.*** **********

371. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 9, identity: 0.7

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgca	Protospacer
  .************ ******** .. *

372. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 9, identity: 0.7

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgca	Protospacer
  .************ ******** .. *

373. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 9, identity: 0.7

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgca	Protospacer
  .************ ******** .. *

374. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 9, identity: 0.7

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgca	Protospacer
  .************ ******** .. *

375. spacer 6.2|93255|30|NC_009437|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 9, identity: 0.7

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgca	Protospacer
  .************ ******** .. *

376. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MH884510 (Exiguobacterium phage vB_EalM-137, complete genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cgaaccgcaaaaagaagaagaaaaagaagaagaaaa	Protospacer
.*..  . **.*****.*******************

377. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_011562 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 DNA, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaagaagaagaagaagattacgg	Protospacer
      **********.*****.***********.*

378. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694640 (Marine virus AFVG_250M10, complete genome) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agatgggaaaaaagaaaaagaaaaataagaagaaga---	Protospacer
   ****.**.*****.**.**.** **********

379. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to LR721753 (Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
cataaaagaagaagaaaaagaaaaagaacaagacct	Protospacer
.. ..*********************** ****

380. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acgaagaaaagaagaagaagaagaagaagaagaaga---	Protospacer
    .*..***********.*****.**********

381. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_010183 (Bacillus mycoides KBAB4 plasmid pBWB404, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------acaaaaagaaaaagaaaaagaaaaagaaaaaaagac	Protospacer
      * **.*****************.*******

382. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_017577 (Shewanella baltica OS117 plasmid pSBAL11701, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaagaagaagaagaagaactcaa	Protospacer
      **********.*****.***********.*

383. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK448748 (Streptococcus phage Javan389, complete genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------agaagaagaagaagaagaagaagaagaagaactgct	Protospacer
      **********.*****.***********.*

384. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK284528 (Bacillus phage DK3, complete genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaaaaagaagaaaaagaagaaaaagaagaattttg	Protospacer
   .***.**************.**.********

385. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013773 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S42-C70, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ctaaaaagaaaaagaaaaataaaaagaagaagaagt	Protospacer
. ...*****.******** **************.

386. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AJ854042 (Acidianus filamentous virus 2, partial genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaaccagaagaagaagaagaaaaggaagaagaaca	Protospacer
 ...  **********.*******.********* *

387. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013460 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S40-C18) position: , mismatch: 9, identity: 0.75

tggggaag-------aagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
-------gtttccctaagaagaaaaagaaaaagaagaaaaaat	Protospacer
       *       ***********************.***

388. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
taatccagaagaagaagaagaagaagaagaagagga---	Protospacer
   *  .************.*****.*******.**

389. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013495 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C39-MedDCM-OCT-S27-C61) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ctaaaaagaaaaagaaaaataaaaagaagaagaagt	Protospacer
. ...*****.******** **************.

390. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP014445 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C39-MedDCM-OCT-S35-C62, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ctaaaaagaaaaagaaaaataaaaagaagaagaagt	Protospacer
. ...*****.******** **************.

391. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---caaagaagaagaagaagaagaagaagaagaagcacc	Protospacer
    .***********.*****.***********.

392. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acttcacaaagaagaagaagaagaagaagaagaaga---	Protospacer
   * . .***********.*****.**********

393. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
acagatagaagaagaagaagaagaagaagaagaagc	Protospacer
  .*. **********.*****.***********.

394. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---gatagaagaagaagaagaagaagaagaagaagcggc	Protospacer
   *. **********.*****.***********.

395. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa------	CRISPR spacer
------aaaaaaagaaaaagaaaaagaaaaagaaaaaggtaa	Protospacer
      *.**.*****************.*******

396. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010110 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
tttaaaagaaaaagaaaaagaaaaagaaaaaaagta	Protospacer
*  ..*****.*****************.**.*. *

397. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032092 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gcgtcgggaagaagcaaaagtaaaagaagaagaaag	Protospacer
  *  ..******* ***** **************.

398. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694558 (Marine virus AFVG_250M9, complete genome) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agatgggaaaaaagaaaaagaaaaataagaagaaga---	Protospacer
   ****.**.*****.**.**.** **********

399. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693120 (Marine virus AFVG_25M98, complete genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aacaaaagaagaagaaaaaccaaaagaagaagatca	Protospacer
 . ..**************  ************  *

400. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694485 (Marine virus AFVG_250M19, complete genome) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ataaagataaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
  ....* **.*****************.*******

401. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694392 (Marine virus AFVG_250M8, complete genome) position: , mismatch: 9, identity: 0.75

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
agatgggaaaaaagaaaaagaaaaataagaagaaga---	Protospacer
   ****.**.*****.**.**.** **********

402. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to AP013454 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S33-C36) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
caccaatgaagaacaaaaagaaaaagaaaaagaaca	Protospacer
..  .* ****** **************.***** *

403. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
caatcaaacagaagaaaaacaaaaagaagcagaaaa	Protospacer
...  **. ********** ********* ******

404. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009067 (Borreliella afzelii K78 plasmid lp38, complete sequence) position: , mismatch: 9, identity: 0.75

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
caatcaaacagaagaaaaacaaaaagaagcagaaaa	Protospacer
...  **. ********** ********* ******

405. spacer 11.48|2516431|37|NC_009437|CRISPRCasFinder,CRT matches to MT375524 (Pelagibacter phage Gjalp EXVC02, partial genome) position: , mismatch: 9, identity: 0.757

ttagtgaatattaccaagcaatacttataacaaagta------	CRISPR spacer
ttagtgaatataaccaagcaatgctt------gagtattgtga	Protospacer
*********** **********.***      .****

406. spacer 11.48|2516431|37|NC_009437|CRISPRCasFinder,CRT matches to MT375523 (Pelagibacter phage Eyrgjafa EXV, complete genome) position: , mismatch: 9, identity: 0.757

ttagtgaatattaccaagcaatacttataacaaagta------	CRISPR spacer
ttagtgaatataaccaagcaatgctt------gagtattgtga	Protospacer
*********** **********.***      .****

407. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 9, identity: 0.735

tatgccccg-----atataaaggtgagcctacaagtatg	CRISPR spacer
-----accgaaaaaatataaaggtgatcctacaaatatt	Protospacer
      ***     ************ *******.***

408. spacer 11.84|2518784|37|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to CP020973 (Xanthomonas axonopodis pv. phaseoli strain CFBP6546R plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.757

aaccgtttatgccgcgaaagcccttgacttggtggaa	CRISPR spacer
aaccgtttatgccgcgaaagcccttgctcgcgccggc	Protospacer
************************** ..  *. *.

409. spacer 11.88|2519048|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 9, identity: 0.735

ttgcctcctccaacgtcaccggctccaccagcgg	CRISPR spacer
ggcgcagcgccatcgtcaccggttccaccagcgg	Protospacer
    *  * *** *********.***********

410. spacer 11.88|2519048|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.735

ttgcctcctccaacgtcaccggctccaccagcgg	CRISPR spacer
tccttgcctccaacgtctccggcaccaccatggg	Protospacer
*. .. *********** ***** ******  **

411. spacer 1.2|41840|33|NC_009437|PILER-CR matches to NC_003201 (Oenococcus oeni plasmid pRS2, complete sequence) position: , mismatch: 10, identity: 0.697

ttaaagttagatgaagagacagcaagagctttc	CRISPR spacer
aagaagttagatgaagagatagcaaaagagaaa	Protospacer
  .****************.*****.**

412. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 10, identity: 0.667

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgta	Protospacer
  .************ ******** .. .

413. spacer 6.2|93255|30|NC_009437|PILER-CR matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 10, identity: 0.667

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgta	Protospacer
  .************ ******** .. .

414. spacer 6.2|93255|30|NC_009437|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 10, identity: 0.667

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgta	Protospacer
  .************ ******** .. .

415. spacer 6.2|93255|30|NC_009437|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.667

ataatttaagcttattaacctcttgtctcc	CRISPR spacer
tggatttaagcttatgaacctcttcctgta	Protospacer
  .************ ******** .. .

416. spacer 9.4|356666|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to HM144387 (Bacillus phage W.Ph., complete genome) position: , mismatch: 10, identity: 0.722

ttataaaaagtaggagggtttagaatggcagtcttt	CRISPR spacer
ttaaaaaaaataggagggtttagaatatgactacac	Protospacer
*** *****.****************.  * * . .

417. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694537 (Marine virus AFVG_250M1002, complete genome) position: , mismatch: 10, identity: 0.722

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
ttccatcgaagaattaaaagaaaaagaagaagaatt	Protospacer
*   .  ******  *******************

418. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 10, identity: 0.722

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
--------aaaaagaaaaagaaaaagaaaaagaaaa	Protospacer
        **.*****************.*******

419. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to EU545650 (Acidianus filamentous virus 9, complete genome) position: , mismatch: 10, identity: 0.722

tggggaagaagaagaaaaagaaaaagaagaagaaaa---	CRISPR spacer
---agaacaagaagaagaacaagaacaagaagaagaatt	Protospacer
   .*** ********.** **.** ********.*

420. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP018564 (Staphylococcus argenteus strain 58113 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.722

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaacaagaagaagaaaaagataaagaaaaagagcg	Protospacer
 ... **************** ******.****. .

421. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694613 (Marine virus AFVG_250M1003, complete genome) position: , mismatch: 10, identity: 0.722

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gattttcgaagaagaagaagaagaagaagaagaaat---	Protospacer
   *   ************.*****.********.

422. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010580 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB76, complete sequence) position: , mismatch: 10, identity: 0.722

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
gccgaaggaaaaagaaaaagaaaaagaggaagagct	Protospacer
   *.*.***.****************.*****.

423. spacer 10.22|541075|37|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021670 (Bacillus licheniformis strain SRCM100141 plasmid pBL141-2 sequence) position: , mismatch: 10, identity: 0.73

gtgcaatttgataagctttcatgttttgctctgggtt	CRISPR spacer
caagtatttgagaagctttcatgatttgctcttgata	Protospacer
  .  ****** *********** ******** *.*

424. spacer 10.22|541075|37|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035189 (Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

gtgcaatttgataagctttcatgttttgctctgggtt	CRISPR spacer
caagtatttgagaagctttcatgatttgctcttgata	Protospacer
  .  ****** *********** ******** *.*

425. spacer 10.22|541075|37|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014843 (Bacillus licheniformis strain SCDB 14 plasmid pSCDB14, complete sequence) position: , mismatch: 10, identity: 0.73

gtgcaatttgataagctttcatgttttgctctgggtt	CRISPR spacer
caagtatttgagaagctttcatgatttgctcttgata	Protospacer
  .  ****** *********** ******** *.*

426. spacer 11.2|2513416|38|NC_009437|CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.737

ttgttccatttctttgacaatccgcttgaattcttttt	CRISPR spacer
gcgcgcttttactttgacaaaccgcttgaattcttgct	Protospacer
 .*. *. ** ********* ************** .*

427. spacer 11.88|2519048|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 10, identity: 0.706

ttgcctcctccaacgtcaccggctccaccagcgg	CRISPR spacer
accgaacggccatcgtcaccggctcgaccagcgg	Protospacer
 .    *  *** ************ ********

428. spacer 13.1|2533583|40|NC_009437|CRT matches to NC_017406 (Borreliella burgdorferi JD1 plasmid JD1 lp28-5, complete sequence) position: , mismatch: 10, identity: 0.75

ctgtataaaaacaatgaaagttctaaaaatagtatcaatc	CRISPR spacer
ttatataaaaataataaaagttctaaaaataaagtaattg	Protospacer
.*.********.***.***************. .* * *

429. spacer 13.1|2533583|40|NC_009437|CRT matches to NC_017415 (Borreliella burgdorferi N40 plasmid N40_lp28-5, complete sequence) position: , mismatch: 10, identity: 0.75

ctgtataaaaacaatgaaagttctaaaaatagtatcaatc	CRISPR spacer
ttatataaaaataataaaagttctaaaaataaagtaattg	Protospacer
.*.********.***.***************. .* * *

430. spacer 13.1|2533583|40|NC_009437|CRT matches to NZ_CP017214 (Borreliella burgdorferi strain B331 plasmid B331_lp28_5, complete sequence) position: , mismatch: 10, identity: 0.75

ctgtataaaaacaatgaaagttctaaaaatagtatcaatc	CRISPR spacer
ttatataaaaataataaaagttctaaaaataaagtaattg	Protospacer
.*.********.***.***************. .* * *

431. spacer 13.1|2533583|40|NC_009437|CRT matches to NZ_CP017216 (Borreliella burgdorferi strain B331 plasmid B331_lp36, complete sequence) position: , mismatch: 10, identity: 0.75

ctgtataaaaacaatgaaagttctaaaaatagtatcaatc	CRISPR spacer
ttatataaaaataataaaagttctaaaaataaagtaattg	Protospacer
.*.********.***.***************. .* * *

432. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP019234 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

433. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP053937 (Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

434. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP018934 (Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

435. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

436. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP031075 (Bacillus mycoides strain BPN401 plasmid pl37, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

437. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP010087 (Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

438. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NC_006578 ([Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

439. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP018936 (Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

440. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP018936 (Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

441. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NC_023074 (Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

442. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP053978 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

443. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP009333 (Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

444. spacer 13.6|2533719|37|NC_009437|CRISPRCasFinder matches to NZ_CP018932 (Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

aatatgaatctaaatactcaaaagctgaaaaggttaa	CRISPR spacer
aatataaatctaaaaactcaaaagctgctctagtatc	Protospacer
*****.******** ************    .**

445. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694640 (Marine virus AFVG_250M10, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaaacaaaacaagaaaaagaaaaagaagaataacg	Protospacer
 .... *.** ******************** ** .

446. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693878 (Marine virus AFVG_250M440, complete genome) position: , mismatch: 11, identity: 0.694

------tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagcttaacaagaaaaagaaaaagaaaaagaaga------	Protospacer
      * .. *****.*******************

447. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaagcttaacaagaaaaagaaaaagaagaacaacg	Protospacer
 ...*   ** ******************** ** .

448. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MK568540 (Vibrio phage ValB1 HC, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

449. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN693860 (Marine virus AFVG_250M392, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaacagttatgaaaaaaaagaaaaacaagaagaaaa	Protospacer
 .. ..  * ***.*********** **********

450. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MN694558 (Marine virus AFVG_250M9, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaaaacaaaacaagaaaaagaaaaagaagaataacg	Protospacer
 .... *.** ******************** ** .

451. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KP671755 (Vibrio phage ValKK3, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

452. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT919973 (Vibrio phage phi-ST2, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

453. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NC_023568 (Vibrio phage VH7D, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

454. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MT612989 (Vibrio phage vB_ValM_R11Z, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

455. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to MT612988 (Vibrio phage vB_ValM_R10Z, complete genome) position: , mismatch: 11, identity: 0.694

tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgctgaagaagaaaaagaatacgaagaagagct	Protospacer
 .  *  *************** * ********.

456. spacer 11.73|2518065|34|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to KC465899 (Pelagibacter phage HTVC008M, complete genome) position: , mismatch: 11, identity: 0.676

tatgccccgatataaaggtgagcctacaagtatg	CRISPR spacer
tccagagaaatataaaggtgaccctacaaatatt	Protospacer
* ..    .************ *******.***

457. spacer 11.99|2519770|37|NC_009437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014818 (Geminocystis sp. NIES-3708 plasmid pGM03, complete sequence) position: , mismatch: 11, identity: 0.703

------tctttgagccgtgatggtttacgtataaaactttctt	CRISPR spacer
aaaaattc------ccgtgatggtttacttatcaaacttttag	Protospacer
      **      ************** *** *******.

458. spacer 7.36|346409|37|NC_009437|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032366 (Bacillus wiedmannii strain SR52 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.676

tctttcagaagcaaagagaactattggagaagtttca	CRISPR spacer
gtaataagaagcaaatagaactattggagtagagagg	Protospacer
 .  * ********* ************* **    .

459. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KC465898 (Pelagibacter phage HTVC010P, complete genome) position: , mismatch: 12, identity: 0.667

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aaactggtaagaagaaaaagaaaaagaagtataaga---	Protospacer
   . ** ********.**.**.**.*** * ****

460. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KP738729 (Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence) position: , mismatch: 12, identity: 0.667

------tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
atttatgagagaagaaaaagaaaaggaaaaagaaaa------	Protospacer
       .*.******.*******.*********.*

461. spacer 9.14|357323|36|NC_009437|CRT,PILER-CR,CRISPRCasFinder matches to KT919972 (Vibrio phage phi-Grn1, complete genome) position: , mismatch: 13, identity: 0.639

---tggggaagaagaagaaaaagaaaaagaagaagaaaa	CRISPR spacer
aatcgcggaagaagaaaaagaatacgaagaagagct---	Protospacer
   .* **********.**.** * .*******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11758 : 70259

Enterobacteria_phage(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915640.1\|11758_12724_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_011915641.1\|12863_13187_-	hypothetical protein	NA	NA	NA	NA
WP_049754816.1\|13208_13934_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011915642.1\|13920_14286_+	DUF1667 domain-containing protein	NA	NA	NA	NA
WP_011915643.1\|15464_16781_+	WYL domain-containing protein	NA	NA	NA	NA
WP_011915644.1\|16764_17766_+	WYL domain-containing protein	NA	NA	NA	NA
WP_011915645.1\|17785_18373_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011915646.1\|18357_21057_-	DEAD/DEAH box helicase family protein	A0A2H4PJ08	Corynebacterium_phage	4.8e-31	29.5
WP_041722407.1\|21325_23074_+	hypothetical protein	NA	NA	NA	NA
WP_041722408.1\|24471_25011_+	hypothetical protein	NA	NA	NA	NA
WP_049754817.1\|25068_25269_+	hypothetical protein	NA	NA	NA	NA
WP_083755720.1\|25272_25515_+	hypothetical protein	NA	NA	NA	NA
WP_083755721.1\|25534_25996_+	hypothetical protein	NA	NA	NA	NA
WP_049754819.1\|26065_26335_+	hypothetical protein	NA	NA	NA	NA
WP_011915648.1\|26441_29489_+	EAL domain-containing protein	NA	NA	NA	NA
WP_011915649.1\|29694_30090_+	hypothetical protein	NA	NA	NA	NA
WP_011915650.1\|30181_30442_-	stage V sporulation protein S	NA	NA	NA	NA
WP_011915651.1\|30619_31333_+	hypothetical protein	NA	NA	NA	NA
WP_049754856.1\|31445_31883_+	hypothetical protein	NA	NA	NA	NA
WP_011915653.1\|31977_32790_+	hypothetical protein	NA	NA	NA	NA
WP_049754820.1\|34263_34497_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.3e-25	70.3
WP_011915655.1\|36587_37943_+	TrpB-like pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011915658.1\|39705_40275_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	8.3e-18	34.6
WP_011915659.1\|40292_41162_+	TPM domain-containing protein	NA	NA	NA	NA
WP_011915661.1\|42372_42546_-	hypothetical protein	NA	NA	NA	NA
WP_041722411.1\|42515_42695_-	hypothetical protein	NA	NA	NA	NA
WP_011915662.1\|43297_44776_+\|transposase	IS21-like element ISCsa9 family transposase	U5N3F9	Enterobacteria_phage	1.5e-26	28.8
WP_011915663.1\|44772_45564_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-48	40.5
WP_011915664.1\|45920_46319_+	hypothetical protein	NA	NA	NA	NA
WP_011915665.1\|46364_47786_+	TIGR01897 family CRISPR-associated protein	NA	NA	NA	NA
WP_011915666.1\|47865_49179_+	TIGR02221 family CRISPR-associated protein	NA	NA	NA	NA
WP_011915667.1\|49549_50497_-\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_011915668.1\|50668_51598_+	hypothetical protein	NA	NA	NA	NA
WP_011915669.1\|51633_52731_+	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_187147309.1\|53582_53756_-	hypothetical protein	NA	NA	NA	NA
WP_041722413.1\|53725_53905_-	hypothetical protein	NA	NA	NA	NA
WP_011915670.1\|54449_55841_+	ATP-binding protein	NA	NA	NA	NA
WP_148203698.1\|57476_57668_-	hypothetical protein	NA	NA	NA	NA
WP_011915673.1\|57932_59162_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915676.1\|62397_63519_-\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_039767848.1\|63758_65825_+	TIGR02556 family CRISPR-associated protein	NA	NA	NA	NA
WP_011915678.1\|65846_66731_+	type I-B CRISPR-associated protein Cas7/Csh2	NA	NA	NA	NA
WP_011915679.1\|66751_67504_+	CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_011915681.1\|68071_68863_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.8e-48	40.5
WP_011915673.1\|69029_70259_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4

DBSCAN-SWA_2

145595 : 196429

Staphylococcus_phage(37.5%)

transposase,tRNA,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915752.1\|145595_146696_-\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_011915753.1\|146942_147308_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011915754.1\|147316_148024_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.1e-17	27.2
WP_011915755.1\|148010_148763_+	hypothetical protein	NA	NA	NA	NA
WP_041722424.1\|148786_149527_+	hypothetical protein	NA	NA	NA	NA
WP_011915757.1\|149558_150500_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-33	36.0
WP_011915758.1\|150483_151653_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011915761.1\|153787_154282_-	hypothetical protein	NA	NA	NA	NA
WP_011915762.1\|154290_155802_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_011915763.1\|155966_156632_-	NAD-binding protein	NA	NA	NA	NA
WP_011915764.1\|156628_157249_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_011915765.1\|157395_159135_+	SpoIID/LytB domain-containing protein	NA	NA	NA	NA
WP_011915766.1\|159131_160169_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_011915767.1\|160301_160877_+	hypothetical protein	NA	NA	NA	NA
WP_011915768.1\|161106_161535_+	hypothetical protein	NA	NA	NA	NA
WP_011915769.1\|161521_164587_+	chromosome segregation ATPase-like protein	NA	NA	NA	NA
WP_011915770.1\|164583_165852_+	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_011915771.1\|166178_168383_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	9.9e-51	29.1
WP_011915772.1\|168715_169945_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915773.1\|171172_171364_+	hypothetical protein	NA	NA	NA	NA
WP_011915774.1\|171402_171594_+	hypothetical protein	NA	NA	NA	NA
WP_011915775.1\|171732_172455_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011915776.1\|172745_173918_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011915777.1\|173950_174898_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-28	36.3
WP_148203723.1\|175024_175213_+\|bacteriocin	lactococcin G-beta/enterocin 1071B family bacteriocin	NA	NA	NA	NA
WP_041722430.1\|175366_175549_+	hypothetical protein	NA	NA	NA	NA
WP_011915779.1\|175586_175811_+	hypothetical protein	NA	NA	NA	NA
WP_011915780.1\|176146_176653_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011915781.1\|177307_178702_-	hypothetical protein	NA	NA	NA	NA
WP_011915782.1\|178803_179295_-	hypothetical protein	NA	NA	NA	NA
WP_011915787.1\|182998_184075_+	iron ABC transporter permease	NA	NA	NA	NA
WP_011915788.1\|184078_184843_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	30.3
WP_011915789.1\|184880_185315_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_011915790.1\|185338_185878_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_011915791.1\|185857_186313_-	DUF3842 family protein	NA	NA	NA	NA
WP_041722437.1\|186561_187629_+	chemotaxis-specific protein-glutamate methyltransferase CheB	NA	NA	NA	NA
WP_049754822.1\|187682_187931_-	DUF3842 family protein	NA	NA	NA	NA
WP_011915793.1\|187963_188515_-	hypothetical protein	NA	NA	NA	NA
WP_011915794.1\|188672_188978_+	hypothetical protein	NA	NA	NA	NA
WP_011915795.1\|189008_189650_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_011915796.1\|189675_190404_+	2-phosphosulfolactate phosphatase family protein	NA	NA	NA	NA
WP_011915797.1\|190406_190967_+	hypothetical protein	NA	NA	NA	NA
WP_011915798.1\|191024_192992_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.6e-100	38.2
WP_011915799.1\|192988_193753_+	TatD family hydrolase	NA	NA	NA	NA
WP_011915800.1\|193795_194392_+	radical SAM protein	NA	NA	NA	NA
WP_011915802.1\|195277_196429_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q332I1	Clostridium_botulinum_C_phage	2.0e-71	43.6

DBSCAN-SWA_3

297813 : 380732

uncultured_virus(41.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915673.1\|297813_299043_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_041722447.1\|299180_299690_+	hypothetical protein	NA	NA	NA	NA
WP_083755723.1\|299727_300699_+	hypothetical protein	NA	NA	NA	NA
WP_011915895.1\|300712_302131_+	hypothetical protein	NA	NA	NA	NA
WP_011915896.1\|302203_303295_+	regulator of chromosome condensation RCC1	E5ERA2	Bathycoccus_sp._RCC1105_virus	6.9e-13	42.3
WP_011915897.1\|303447_303864_+	hemerythrin family protein	NA	NA	NA	NA
WP_011915898.1\|304280_305417_+	hypothetical protein	NA	NA	NA	NA
WP_083755723.1\|305454_306426_+	hypothetical protein	NA	NA	NA	NA
WP_011915772.1\|307166_308396_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915901.1\|309559_310507_-	MoxR family ATPase	NA	NA	NA	NA
WP_011915902.1\|310773_311229_+	VOC family protein	NA	NA	NA	NA
WP_011915903.1\|311261_311906_+	ThuA domain-containing protein	NA	NA	NA	NA
WP_011915904.1\|312076_313249_+	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_011915905.1\|314436_315423_+	glycoside hydrolase family 130 protein	NA	NA	NA	NA
WP_011915906.1\|315673_317320_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_011915907.1\|317431_318358_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_083755724.1\|318384_319287_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011915909.1\|319346_321137_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.5e-17	26.3
WP_011915910.1\|321111_322620_+	response regulator	NA	NA	NA	NA
WP_011915911.1\|322692_324966_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_011915912.1\|326035_326317_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011915913.1\|326845_327424_+	biotin transporter BioY	NA	NA	NA	NA
WP_011915914.1\|327447_328179_+	dethiobiotin synthase	NA	NA	NA	NA
WP_011915915.1\|328172_329522_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA
WP_011915916.1\|329621_330614_-	biotin synthase BioB	NA	NA	NA	NA
WP_011915919.1\|334187_335429_+	type I-B CRISPR-associated protein Cas8b1/Cst1	NA	NA	NA	NA
WP_011915920.1\|335425_335959_+	hypothetical protein	NA	NA	NA	NA
WP_011915921.1\|335962_337111_+	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_011915922.1\|337128_337956_+	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_011915923.1\|337948_340675_+	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	9.2e-30	24.1
WP_011915667.1\|340738_341686_-\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_011915924.1\|341846_342359_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_011917894.1\|342367_343348_+	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_041722450.1\|343602_343866_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_011915681.1\|347999_348791_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.8e-48	40.5
WP_011915673.1\|349325_350555_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915673.1\|354142_355372_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915930.1\|360007_360493_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.0e-24	37.4
WP_011915933.1\|362589_362862_+	Veg family protein	NA	NA	NA	NA
WP_011915934.1\|363054_364590_+	DUF3794 domain-containing protein	NA	NA	NA	NA
WP_011915935.1\|364645_366013_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_011915936.1\|366215_367034_+	pur operon repressor	NA	NA	NA	NA
WP_011915937.1\|367155_367422_+	septation regulator SpoVG	NA	NA	NA	NA
WP_011915938.1\|367480_369709_-	hypothetical protein	NA	NA	NA	NA
WP_011915939.1\|369798_370647_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011915940.1\|370718_372047_-	hypothetical protein	NA	NA	NA	NA
WP_011915941.1\|372192_372624_+	nucleoside deaminase	NA	NA	NA	NA
WP_011915942.1\|372784_373237_+	ATP-binding protein	NA	NA	NA	NA
WP_011915943.1\|373443_374205_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.5e-19	31.2
WP_011915944.1\|374241_375741_+	xylulokinase	NA	NA	NA	NA
WP_011915945.1\|375761_376598_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_011915946.1\|376644_377556_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_011915947.1\|377623_378595_+	D-glycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.5e-38	30.6
WP_011915948.1\|378762_379530_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_011915673.1\|379502_380732_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4

DBSCAN-SWA_4

459383 : 538654

Bacillus_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011916006.1\|459383_460601_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	W0UUA7	Sulfolobus_monocaudavirus	1.6e-21	28.0
WP_011916007.1\|460796_461420_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011916008.1\|461461_462739_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_011916009.1\|462912_464160_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_011916010.1\|464240_464774_-	hypothetical protein	NA	NA	NA	NA
WP_011916011.1\|464940_465606_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.7e-41	41.3
WP_011916012.1\|465627_466881_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_011916013.1\|467029_468136_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_011916014.1\|468282_468852_+	nucleoside recognition protein	NA	NA	NA	NA
WP_011916015.1\|468848_469373_+	nucleoside recognition protein	NA	NA	NA	NA
WP_011916016.1\|469412_470054_-	cobalamin-binding protein	NA	NA	NA	NA
WP_011916017.1\|470072_473066_-	glycoside hydrolase	NA	NA	NA	NA
WP_011916018.1\|473096_473738_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_011916019.1\|473977_475708_+	alpha-glycosidase	NA	NA	NA	NA
WP_011916020.1\|475816_476725_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_011916021.1\|476724_477594_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_011916022.1\|477647_479270_+	alpha-glucan family phosphorylase	NA	NA	NA	NA
WP_011916023.1\|479276_480299_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.3e-15	23.1
WP_011916024.1\|480441_481647_+	maltose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011915673.1\|483020_484250_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011916028.1\|485259_486195_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_011916029.1\|491600_492272_+	beta-phosphoglucomutase family hydrolase	NA	NA	NA	NA
WP_011916030.1\|492285_494556_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_011916031.1\|494794_496021_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011916032.1\|496118_497006_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_011916033.1\|497027_497861_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011916034.1\|497948_498968_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011916035.1\|499070_501416_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_011916036.1\|501645_502200_+	rubrerythrin family protein	NA	NA	NA	NA
WP_011916037.1\|502288_503278_-	aldo/keto reductase	NA	NA	NA	NA
WP_041722457.1\|503444_503918_+	cell division protein ZapA	NA	NA	NA	NA
WP_011916039.1\|503904_504792_+	metalloenzyme	NA	NA	NA	NA
WP_011916040.1\|504803_507107_+	U32 family peptidase	Q6DW11	Phage_TP	1.5e-25	32.0
WP_011916041.1\|507110_508232_+	sporulation integral membrane protein YtvI	NA	NA	NA	NA
WP_011916042.1\|508233_510021_+	DUF4445 domain-containing protein	NA	NA	NA	NA
WP_011916043.1\|510035_510740_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_049754825.1\|510768_511512_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.6e-08	27.5
WP_011916045.1\|511515_512910_+	dipeptidase PepV	NA	NA	NA	NA
WP_083755759.1\|512982_513651_-	manganese efflux pump	NA	NA	NA	NA
WP_011916047.1\|513777_514320_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011916048.1\|514312_515686_+	hypothetical protein	NA	NA	NA	NA
WP_011916049.1\|515738_516047_+	STAS domain-containing protein	NA	NA	NA	NA
WP_011916050.1\|516064_516421_+	anti-sigma regulatory factor	NA	NA	NA	NA
WP_011916051.1\|516425_517199_+	SigB/SigF/SigG family RNA polymerase sigma factor	A0A0A0RV91	Bacillus_phage	1.9e-25	35.9
WP_011916052.1\|517548_517965_+	hemerythrin family protein	NA	NA	NA	NA
WP_011916053.1\|519048_520185_+\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_011916054.1\|520726_522085_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.1e-79	37.7
WP_011916055.1\|522635_523178_+	RNA polymerase sigma factor	A0A1V0DZZ1	Clostridioides_phage	3.9e-33	45.5
WP_011916056.1\|523167_523863_+	DUF4367 domain-containing protein	NA	NA	NA	NA
WP_011916057.1\|524456_525323_+	hypothetical protein	NA	NA	NA	NA
WP_083755729.1\|525318_525801_+	amidase domain-containing protein	NA	NA	NA	NA
WP_011915667.1\|525832_526780_-\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_187147313.1\|526866_527169_+	amidase domain-containing protein	NA	NA	NA	NA
WP_041722711.1\|527474_528023_+	hypothetical protein	NA	NA	NA	NA
WP_083755760.1\|528669_530076_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-26	30.9
WP_011916063.1\|532663_533038_+	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	6.7e-16	41.1
WP_011916064.1\|533051_535424_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.3e-116	35.8
WP_004103231.1\|535510_535975_+	signal peptidase II	NA	NA	NA	NA
WP_011915673.1\|537424_538654_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4

DBSCAN-SWA_5

654695 : 728035

Bacillus_phage(18.18%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011916162.1\|654695_655682_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_148203725.1\|655852_658744_+	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_083755762.1\|658852_660241_+	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_011916165.1\|660285_661704_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-29	31.7
WP_011916166.1\|661861_662881_+	rod shape-determining protein	NA	NA	NA	NA
WP_011916167.1\|662900_663674_+	flagellar basal-body rod protein FlgF	NA	NA	NA	NA
WP_011916168.1\|663731_664535_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_011916169.1\|664559_664910_+	rod-binding protein	NA	NA	NA	NA
WP_011916170.1\|664936_666046_-\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_011916171.1\|666381_667197_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_011916172.1\|667199_668300_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_011916173.1\|668382_669150_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_083755763.1\|669641_670592_+	AEC family transporter	NA	NA	NA	NA
WP_011916175.1\|672257_674609_+	MoxR family ATPase	NA	NA	NA	NA
WP_011916176.1\|674624_675980_+	hypothetical protein	NA	NA	NA	NA
WP_011916177.1\|676023_677373_+	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	4.9e-24	25.9
WP_011916178.1\|677688_679524_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	4.8e-115	41.2
WP_011916179.1\|679587_679917_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011916180.1\|680048_680603_+	flavodoxin family protein	NA	NA	NA	NA
WP_011916183.1\|682506_683151_+	LysE family transporter	NA	NA	NA	NA
WP_011916184.1\|683259_683718_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_011916185.1\|683720_684038_-	hypothetical protein	NA	NA	NA	NA
WP_011916186.1\|684018_684555_-	hypothetical protein	NA	NA	NA	NA
WP_011916187.1\|684934_685168_-	hypothetical protein	NA	NA	NA	NA
WP_011916188.1\|685213_686449_-	DNA polymerase IV	NA	NA	NA	NA
WP_041722468.1\|688030_688555_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_011916191.1\|688569_690324_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_011916192.1\|690341_693878_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011916193.1\|693997_695209_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_011916194.1\|695645_695849_+	hypothetical protein	A0A0C5AEJ6	Paenibacillus_phage	1.9e-17	68.7
WP_083755764.1\|695905_696163_+	hypothetical protein	NA	NA	NA	NA
WP_011916196.1\|696709_697084_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011916197.1\|697080_697539_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_011916198.1\|697811_698057_+	hypothetical protein	NA	NA	NA	NA
WP_011916199.1\|698537_698834_+	UPF0175 family protein	NA	NA	NA	NA
WP_011916200.1\|698817_699312_+	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_011916201.1\|699394_699598_+	hypothetical protein	A0A0C5AEJ6	Paenibacillus_phage	1.9e-17	64.2
WP_011916202.1\|699611_700550_+	hypothetical protein	NA	NA	NA	NA
WP_011916204.1\|702935_703808_+	DNA adenine methylase	R9TL68	Synechococcus_phage	2.2e-38	34.4
WP_011916205.1\|703822_704248_+	hypothetical protein	A0A0E3EYX5	Synechococcus_phage	1.5e-08	32.3
WP_011916206.1\|704302_705625_-	ATP-binding protein	NA	NA	NA	NA
WP_011916207.1\|706042_706387_+	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	1.2e-06	37.0
WP_011916208.1\|706439_706841_+	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	2.3e-22	50.4
WP_011916209.1\|707129_707840_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_041722470.1\|708073_708358_+	hypothetical protein	NA	NA	NA	NA
WP_011916211.1\|708506_708872_+	hypothetical protein	NA	NA	NA	NA
WP_011916212.1\|709001_710633_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_148203705.1\|710774_710942_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_011916213.1\|711076_711994_-	WG repeat-containing protein	NA	NA	NA	NA
WP_011916214.1\|711990_713214_-	WG repeat-containing protein	NA	NA	NA	NA
WP_011916215.1\|713331_713967_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011916216.1\|714049_714748_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-29	34.5
WP_187147315.1\|718380_718527_+	hypothetical protein	NA	NA	NA	NA
WP_011915667.1\|719469_720417_+\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_011915667.1\|720624_721572_+\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_011916223.1\|722577_723255_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011916224.1\|724614_726345_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.4e-23	24.7
WP_011916225.1\|726586_728035_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1232930 : 1305906

Staphylococcus_phage(18.18%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915673.1\|1232930_1234160_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011916647.1\|1234616_1235099_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.1e-23	42.8
WP_011916648.1\|1235129_1236491_-	beta-glucosidase	A0A0B5JD41	Pandoravirus	2.5e-60	32.7
WP_011916649.1\|1236735_1239108_-	glycosyl transferase	NA	NA	NA	NA
WP_011916650.1\|1239132_1241568_-	glycosyl transferase	NA	NA	NA	NA
WP_049754867.1\|1241855_1243052_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011916652.1\|1243048_1244395_+	sugar transferase	NA	NA	NA	NA
WP_011916653.1\|1244504_1244702_-	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_011916654.1\|1245183_1245660_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.8e-41	57.7
WP_011916655.1\|1246048_1247191_+	aldo/keto reductase	NA	NA	NA	NA
WP_011916657.1\|1247753_1248167_+	cupin domain-containing protein	NA	NA	NA	NA
WP_187147321.1\|1249038_1250151_+	MFS transporter	NA	NA	NA	NA
WP_011916659.1\|1250255_1251260_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011916660.1\|1251454_1253707_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_011916661.1\|1253853_1255668_+	histidine kinase	NA	NA	NA	NA
WP_011916662.1\|1255668_1257642_+	response regulator	NA	NA	NA	NA
WP_187147325.1\|1258578_1259232_+	family 78 glycoside hydrolase catalytic domain	NA	NA	NA	NA
WP_011916663.1\|1259162_1260272_-\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_049754838.1\|1260466_1261708_+	family 78 glycoside hydrolase catalytic domain	NA	NA	NA	NA
WP_011916664.1\|1261792_1262563_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_011915752.1\|1263634_1264735_+\|transposase	IS481-like element ISCsa6 family transposase	NA	NA	NA	NA
WP_011915667.1\|1266179_1267127_-\|transposase	ISNCY-like element ISCsa7 family transposase	NA	NA	NA	NA
WP_011916667.1\|1269042_1270065_-	aldo/keto reductase	NA	NA	NA	NA
WP_011916668.1\|1270069_1271830_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-70	35.7
WP_011916669.1\|1271853_1272606_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_011916670.1\|1272813_1275003_+	alpha-galactosidase	NA	NA	NA	NA
WP_011916671.1\|1275051_1275870_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011916672.1\|1275996_1276566_+	hypothetical protein	NA	NA	NA	NA
WP_011916673.1\|1276882_1277059_+	hypothetical protein	NA	NA	NA	NA
WP_011916674.1\|1277156_1277891_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_011916675.1\|1277938_1279150_-	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA
WP_011916676.1\|1279178_1280564_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_011916677.1\|1281110_1282085_+	radical SAM protein	NA	NA	NA	NA
WP_011916678.1\|1282106_1282916_+	radical SAM protein	NA	NA	NA	NA
WP_011916679.1\|1282954_1283980_+	hypothetical protein	NA	NA	NA	NA
WP_011916680.1\|1283988_1284975_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-15	27.7
WP_011916681.1\|1284976_1285825_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_011916682.1\|1285832_1286618_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_011916683.1\|1286777_1288004_+	hypothetical protein	NA	NA	NA	NA
WP_011916684.1\|1288810_1290097_-\|transposase	IS110-like element ISCsa4 family transposase	A0A1X9I619	Streptococcus_phage	1.0e-15	24.6
WP_011916686.1\|1291215_1292202_+	hypothetical protein	NA	NA	NA	NA
WP_011916687.1\|1292297_1292792_-	ferritin family protein	NA	NA	NA	NA
WP_011916688.1\|1292968_1293469_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011916689.1\|1294157_1294973_+	amidohydrolase family protein	NA	NA	NA	NA
WP_011916690.1\|1295030_1295819_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011916691.1\|1295845_1296652_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011916692.1\|1296809_1298420_+	biosynthetic-type acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	8.8e-65	33.5
WP_011916693.1\|1298470_1298983_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_011916694.1\|1298985_1299987_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_011916695.1\|1300003_1301527_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.0e-09	25.3
WP_011916696.1\|1301605_1301770_+	hypothetical protein	NA	NA	NA	NA
WP_011916697.1\|1301863_1303444_+	citramalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	3.3e-08	37.5
WP_041722491.1\|1304543_1304882_+	hypothetical protein	NA	NA	NA	NA
WP_187147322.1\|1304974_1305208_+	hypothetical protein	NA	NA	NA	NA
WP_011916698.1\|1305294_1305906_-\|coat	SafA/ExsA family spore coat assembly protein	A0A0E3T7R5	Bacillus_phage	3.1e-55	52.5

DBSCAN-SWA_7

2139534 : 2151677

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011917513.1\|2139534_2140194_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-16	31.8
WP_011917514.1\|2140190_2141216_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.1e-64	39.9
WP_011917515.1\|2141218_2142643_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.1e-62	34.5
WP_011917516.1\|2142624_2144817_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.9e-159	41.9
WP_011917517.1\|2144823_2145519_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_011917518.1\|2145522_2145771_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011917519.1\|2145809_2146520_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.7e-40	41.2
WP_011917520.1\|2146645_2148034_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.3e-56	33.3
WP_011917521.1\|2148257_2149481_-	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	2.3e-09	30.7
WP_011917522.1\|2149576_2150980_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.1e-42	39.2
WP_011917523.1\|2151005_2151677_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-55	46.8

DBSCAN-SWA_8

2616658 : 2674413

Staphylococcus_phage(41.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915673.1\|2616658_2617888_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011917967.1\|2617894_2618170_-	urease subunit gamma	NA	NA	NA	NA
WP_011917968.1\|2618219_2618900_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-16	31.1
WP_041722615.1\|2618883_2619657_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-20	29.6
WP_011917970.1\|2619676_2620720_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_041722909.1\|2620738_2621641_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_041722911.1\|2621676_2622906_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011917973.1\|2623110_2623449_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_011917974.1\|2623493_2624831_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	1.9e-84	45.1
WP_011917976.1\|2625783_2626122_+	hypothetical protein	NA	NA	NA	NA
WP_011917977.1\|2626173_2627391_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	W0UUA7	Sulfolobus_monocaudavirus	3.5e-21	26.5
WP_011917978.1\|2627495_2628101_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011917979.1\|2628304_2629441_-	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_011917980.1\|2629466_2629817_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_011917981.1\|2629864_2630233_-	OadG family protein	NA	NA	NA	NA
WP_011917982.1\|2630254_2631649_-	oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_011917983.1\|2631991_2632969_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_011917984.1\|2633106_2634642_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_011917985.1\|2634785_2635775_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_011917988.1\|2638260_2639112_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011917989.1\|2639121_2640405_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_011917990.1\|2640483_2641761_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011917991.1\|2642065_2643073_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_041722616.1\|2643291_2643510_-	hypothetical protein	NA	NA	NA	NA
WP_011917993.1\|2643621_2643930_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_011917994.1\|2644123_2644513_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011917995.1\|2644509_2645388_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.0e-24	32.8
WP_011917996.1\|2645365_2646034_+	hypothetical protein	NA	NA	NA	NA
WP_011917997.1\|2646062_2646770_+	hypothetical protein	NA	NA	NA	NA
WP_187147304.1\|2647292_2647514_-	hypothetical protein	NA	NA	NA	NA
WP_011917999.1\|2647637_2648363_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.2e-23	28.8
WP_011918000.1\|2648359_2649571_+	ABC transporter permease	NA	NA	NA	NA
WP_011918001.1\|2649848_2650970_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_011918002.1\|2650972_2652490_-	xylose ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-16	27.5
WP_011918003.1\|2652591_2653647_-	D-xylose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011918004.1\|2653861_2654836_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011918005.1\|2654846_2656334_+	histidine kinase	Q9EYF3	Enterobacteria_phage	3.0e-19	29.2
WP_011918006.1\|2656330_2657887_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011918007.1\|2657910_2658930_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011917193.1\|2658991_2660695_-\|transposase	IS1634-like element ISCsa8 family transposase	NA	NA	NA	NA
WP_011918008.1\|2661094_2661835_+	DUF72 domain-containing protein	A0A1V0CNL1	Kaumoebavirus	2.3e-28	34.6
WP_011918009.1\|2661887_2663225_-	glycoside hydrolase family 30 protein	NA	NA	NA	NA
WP_011918010.1\|2663378_2664221_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_011918011.1\|2664242_2665130_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_011918012.1\|2665213_2666536_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011918013.1\|2666863_2668654_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.6e-22	34.0
WP_011918014.1\|2668690_2670280_+	response regulator	NA	NA	NA	NA
WP_187147305.1\|2670348_2672184_-	discoidin domain-containing protein	NA	NA	NA	NA
WP_011915772.1\|2673183_2674413_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4

DBSCAN-SWA_9

2768211 : 2817434

uncultured_virus(30.0%)

transposase,integrase

attL 2770176:2770194|attR 2783582:2783600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011915673.1\|2768211_2769441_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011918091.1\|2769938_2770169_-	hypothetical protein	NA	NA	NA	NA
2770176:2770194	attL	NA	NA	NA	NA
WP_158304414.1\|2770316_2770463_-	hypothetical protein	NA	NA	NA	NA
WP_011918092.1\|2770598_2771609_-	phage recombination protein Bet	A0A1B1IN99	uncultured_Mediterranean_phage	2.3e-34	45.5
WP_011918093.1\|2771675_2771948_-	hypothetical protein	NA	NA	NA	NA
WP_041722641.1\|2772008_2772230_-	hypothetical protein	NA	NA	NA	NA
WP_011918094.1\|2772433_2772925_-	hypothetical protein	NA	NA	NA	NA
WP_011915663.1\|2774103_2774895_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-48	40.5
WP_011915673.1\|2775053_2776283_+\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011915673.1\|2778060_2779290_-\|transposase	IS256-like element ISCsa2 family transposase	A0A218MNI5	uncultured_virus	1.3e-12	31.4
WP_011918097.1\|2779770_2780613_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_011918098.1\|2780746_2781511_-	radical SAM protein	NA	NA	NA	NA
WP_011918099.1\|2781528_2782389_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.2e-13	33.1
WP_011918100.1\|2782404_2782614_-	hypothetical protein	NA	NA	NA	NA
WP_011918101.1\|2782825_2783575_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_011918102.1\|2783657_2783996_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
2783582:2783600	attR	NA	NA	NA	NA
WP_011918103.1\|2783992_2784244_-	hypothetical protein	NA	NA	NA	NA
WP_011918104.1\|2784327_2785173_-	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA
WP_011918105.1\|2785190_2785391_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_011918106.1\|2785384_2785678_-	hypothetical protein	NA	NA	NA	NA
WP_011918107.1\|2785695_2787879_-	M23 family metallopeptidase	G9BW84	Planktothrix_phage	7.6e-19	42.0
WP_011918108.1\|2787880_2788420_-	HD domain-containing protein	NA	NA	NA	NA
WP_011918109.1\|2788484_2788910_-	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	7.9e-05	43.1
WP_011918110.1\|2788930_2789578_-	SAF domain-containing protein	NA	NA	NA	NA
WP_041722646.1\|2789598_2790261_-	hypothetical protein	NA	NA	NA	NA
WP_011918112.1\|2790326_2792141_-	LamG domain-containing protein	NA	NA	NA	NA
WP_011918113.1\|2792197_2792407_-	hypothetical protein	NA	NA	NA	NA
WP_011918114.1\|2792421_2792865_-	prepilin peptidase	NA	NA	NA	NA
WP_011918115.1\|2792861_2793413_-	hypothetical protein	NA	NA	NA	NA
WP_041722647.1\|2793351_2793783_-	hypothetical protein	NA	NA	NA	NA
WP_041722650.1\|2793830_2794043_-	hypothetical protein	NA	NA	NA	NA
WP_011918117.1\|2794063_2794261_-	hypothetical protein	NA	NA	NA	NA
WP_011918118.1\|2794274_2794997_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_041722652.1\|2794993_2795674_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011918120.1\|2795771_2797172_-	hypothetical protein	NA	NA	NA	NA
WP_011918121.1\|2797186_2797948_-	type II secretion system F family protein	NA	NA	NA	NA
WP_011918122.1\|2798110_2798860_-	hypothetical protein	NA	NA	NA	NA
WP_011918123.1\|2798840_2799968_-	CpaF family protein	NA	NA	NA	NA
WP_011918124.1\|2799964_2801254_-	hypothetical protein	NA	NA	NA	NA
WP_011918125.1\|2801323_2807848_-	hypothetical protein	NA	NA	NA	NA
WP_011918126.1\|2807867_2809742_-	hypothetical protein	NA	NA	NA	NA
WP_011918127.1\|2809829_2810378_-	hypothetical protein	NA	NA	NA	NA
WP_011918128.1\|2810349_2811123_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_011918129.1\|2811119_2811488_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011918130.1\|2812182_2812353_-	hypothetical protein	NA	NA	NA	NA
WP_011918131.1\|2812358_2812835_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011918132.1\|2813911_2814274_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011918133.1\|2814275_2814632_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011918134.1\|2815087_2815453_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_011918135.1\|2815774_2817031_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0A8WI33	Clostridium_phage	4.4e-35	31.9
WP_011918136.1\|2817023_2817434_-\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	1.2e-34	55.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009437

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection