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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009441 Flavobacterium johnsoniae UW101, complete sequence 8 crisprs cas3,DEDDh,csa3,RT,PD-DExK,WYL 0 3 5 0

Results visualization

1. NC_009441
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_1 644499-644594 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_2 644859-645169 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_3 1118828-1118972 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_5 1341622-1341770 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_4 1341181-1341330 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_6 3182380-3182461 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_7 5194431-5194658 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009441_8 5739460-5739576 Orphan NA
1 spacers
WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009441_7 7.2|5194523|26|NC_009441|CRISPRCasFinder 5194523-5194548 26 MG543995 Staphylococcus phage UPMK_1, partial genome 115381-115406 4 0.846
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 MH319732 Marine virus AG-345-E02 Ga0172268_12 genomic sequence 42205-42234 6 0.8
NC_009441_3 3.1|1118868|31|NC_009441|PILER-CR 1118868-1118898 31 MK552327 Pseudomonas phage Psa21, complete genome 1625-1655 7 0.774
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NC_011774 Bacillus cereus G9842 plasmid pG9842_140, complete sequence 110456-110485 7 0.767
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 82142-82171 7 0.767
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NC_015221 Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence 58145-58174 7 0.767
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 MH319749 Marine virus AG-345-F15 Ga0172271_11 genomic sequence 102156-102185 7 0.767
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 MN855778 Myoviridae sp. isolate 416, complete genome 10862-10891 7 0.767
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NZ_CP019641 Planococcus sp. Y42 plasmid unnamed1, complete sequence 96388-96417 8 0.733
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NZ_KX274135 Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence 10980-11009 8 0.733
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 459878-459907 8 0.733
NC_009441_7 7.1|5194462|30|NC_009441|CRISPRCasFinder 5194462-5194491 30 NC_014819 Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence 33999-34028 9 0.7

1. spacer 7.2|5194523|26|NC_009441|CRISPRCasFinder matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.846

aaaggtaataaaagctctttttttag	CRISPR spacer
aataataataaaagctcttttttttg	Protospacer
** ..******************* *

2. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to MH319732 (Marine virus AG-345-E02 Ga0172268_12 genomic sequence) position: , mismatch: 6, identity: 0.8

cgggataat----ataaaatcctttttttttata	CRISPR spacer
----attatctcaataaaatcctttttctttata	Protospacer
    ** **    **************.******

3. spacer 3.1|1118868|31|NC_009441|PILER-CR matches to MK552327 (Pseudomonas phage Psa21, complete genome) position: , mismatch: 7, identity: 0.774

attgtctgcttctagttttgctttcgcagcg	CRISPR spacer
attgttttcttctagttttgctttaaccaca	Protospacer
*****.* **************** .* .*.

4. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 7, identity: 0.767

cgggataatataaaatcctttttttttata	CRISPR spacer
atacaaaatataaaatgctttttttgtata	Protospacer
  . * ********** ******** ****

5. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.767

cgggata-----atataaaatcctttttttttata	CRISPR spacer
-----tatttgtatataaactactttttttttata	Protospacer
     **     ******* * *************

6. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NC_015221 (Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence) position: , mismatch: 7, identity: 0.767

cgggataatataaaatcctttttttttata-	CRISPR spacer
tgcgataatataaaat-ctttttttcggtgc	Protospacer
.* ************* ********. .*. 

7. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to MH319749 (Marine virus AG-345-F15 Ga0172271_11 genomic sequence) position: , mismatch: 7, identity: 0.767

cgggataat----ataaaatcctttttttttata	CRISPR spacer
----gttatcttaataaaatccttttttattata	Protospacer
    .* **    *************** *****

8. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to MN855778 (Myoviridae sp. isolate 416, complete genome) position: , mismatch: 7, identity: 0.767

cgggataatataaaatcctttttttttata	CRISPR spacer
agcgataaaataaaatccgtttttttcttg	Protospacer
 * ***** ********* *******. *.

9. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgggataatataaaatcctttttttttata	CRISPR spacer
tctgataataaaaaatccttttttatcttg	Protospacer
.  ******* ************* *. *.

10. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.733

cgggataatataaaatcctttttttttata	CRISPR spacer
agggatgctataaaatccttttttgaaaac	Protospacer
 *****. ****************   *  

11. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.733

cgggataatataaaatcctttttttttata	CRISPR spacer
catttcaatattaaatcctttttctttatg	Protospacer
*.   .***** ***********.*****.

12. spacer 7.1|5194462|30|NC_009441|CRISPRCasFinder matches to NC_014819 (Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence) position: , mismatch: 9, identity: 0.7

cgggataatataaaatcctttttttttata	CRISPR spacer
aaaatgaatataaaatgatttttttttatt	Protospacer
 ...  **********  *********** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 345025 : 356253 10 Sphingomonas_phage(22.22%) NA NA
DBSCAN-SWA_2 819450 : 829608 13 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_3 3131193 : 3186887 42 unidentified_phage(11.11%) transposase,integrase attL 3162366:3162380|attR 3189456:3189470
DBSCAN-SWA_4 4286592 : 4336082 55 Brevibacillus_phage(50.0%) transposase,integrase attL 4283576:4283590|attR 4340951:4340965
DBSCAN-SWA_5 4364592 : 4396142 36 Brevibacillus_phage(20.0%) transposase,integrase attL 4365850:4365864|attR 4403614:4403628
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage