CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009486	Thermotoga petrophila RKU-1, complete sequence	9 crisprs	cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	0	5	4	0

1. NC_009486

CRISPR-Cas detection and classification

Crispr_ID: NC_009486_1

• CRISPR_ID: NC_009486_1
• CRISPR_location: 523936-524234
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 4 spacers

Consensus repeat of NC_009486_1

Consensus_repeat	Method
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_009486_1

>1.1|523966|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
GCTTCAGCAGATTAAACAATACGTGAATCCAAGTCT
>1.2|524032|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CGGTTGCCTCTGCAATCATTTTTACACGGCCATTAAT
>1.3|524099|39|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCG
>1.4|524168|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
GGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAG

CRISPR arrays and Neighbor proteins around NC_009486_1

CRISPR arrays

The CRISPR arrays of NC_009486_1

>merge|NC_009486|1|523936-524234|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAACGCTTCAGCAGATTAAACAATACGTGAATCCAAGTCTGTTTCAATAGTTCCTTAGAGGTATGGAAACCGGTTGCCTCTGCAATCATTTTTACACGGCCATTAATGTTTCAATAGTTCCTTAGAGGTATGGAAACCCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCGGTTTCAATAGTTCCTTAGAGGTATGGAAACGGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAGGTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_009486|1|1|523936-524234|PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GCTTCAGCAGATTAAACAATACGTGAATCCAAGTCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTTGCCTCTGCAATCATTTTTACACGGCCATTAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAG
GTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_009486|1|1|523936-524234|CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GCTTCAGCAGATTAAACAATACGTGAATCCAAGTCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTTGCCTCTGCAATCATTTTTACACGGCCATTAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAG
GTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_009486|1|1|523936-524234|CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GCTTCAGCAGATTAAACAATACGTGAATCCAAGTCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTTGCCTCTGCAATCATTTTTACACGGCCATTAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGTAGTCAAAATCGTAGAAACAGACAAGGTACCAACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GGAGTACCTTCCGCTTCTTCCAAGCAACGTGGTAGAG
GTTTCAATACTTCCTTAGAGGTATGGAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|273568
NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380325
NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein	unknown	unknown	gnl|CDD|225140
NC_009486.1|WP_004083227.1|518457_518913_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319885
NC_009486.1|WP_012895852.1|524343_525309_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223318
NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|223672
NC_009486.1|WP_011943150.1|513535_514753_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|181342
NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|378925
NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380315
NC_009486.1|WP_008191950.1|520174_520912_+|hypothetical-protein	unknown	unknown	gnl|CDD|238481
NC_009486.1|WP_004083229.1|516937_518461_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|223147
NC_009486.1|WP_011943154.1|520938_522054_-|ROK-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224851
NC_009486.1|WP_011943155.1|522058_523279_-|glycosyltransferase	unknown	unknown	gnl|CDD|340823
NC_009486.1|WP_012895855.1|514733_515411_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274317
NC_009486.1|WP_012895854.1|515811_516945_+|glutamine-amidotransferase-family-protein	unknown	unknown	gnl|CDD|238888
NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|163244
NC_009486.1|WP_011943149.1|512997_513552_+|thymidine-kinase	unknown	unknown	gnl|CDD|224352
NC_009486.1|WP_011943153.1|518909_520187_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224171

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase	gnl|CDD|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein	gnl|CDD|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	2.69366e-95
NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein	gnl|CDD|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.43462e-94
NC_009486.1|WP_004083227.1|518457_518913_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319885	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase. This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.	1.75166e-65
NC_009486.1|WP_012895852.1|524343_525309_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.95251e-153
NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	3.1365e-19
NC_009486.1|WP_011943150.1|513535_514753_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.33291e-52
NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease	gnl|CDD|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.87991e-15
NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein	gnl|CDD|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.30372e-80
NC_009486.1|WP_008191950.1|520174_520912_+|hypothetical-protein	gnl|CDD|238481	cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.	4.04526e-126
NC_009486.1|WP_004083229.1|516937_518461_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	0
NC_009486.1|WP_011943154.1|520938_522054_-|ROK-family-transcriptional-regulator	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.70699e-41
NC_009486.1|WP_011943155.1|522058_523279_-|glycosyltransferase	gnl|CDD|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	0
NC_009486.1|WP_012895855.1|514733_515411_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.37318e-86
NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	7.83215e-66
NC_009486.1|WP_012895854.1|515811_516945_+|glutamine-amidotransferase-family-protein	gnl|CDD|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	1.42689e-110
NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase	gnl|CDD|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	7.41689e-78
NC_009486.1|WP_011943149.1|512997_513552_+|thymidine-kinase	gnl|CDD|224352	COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism].	2.9686e-79
NC_009486.1|WP_011943153.1|518909_520187_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	4.0902e-84

Protein sequences

>NC_009486.1|WP_011943155.1|522058_523279_-|glycosyltransferase
MDVVLRERNIEEYRTIIGNEVDEIKKLAEPLKGKKVLHVNATAYGGGVAEILHNLVPLMRSVGLDARWRVIEAPDEFFNVTKKFHNTLQGADIEISEEEWNLYEEVCRKNAELIQDEELFVIHDPQPAALRKFVDLNDRKWIWRCHIDLSTPNMKVWQRFSQYLEGYDRLVFHLEEYFPQGWKERSIAFPPSIDPLSEKNRDLDEDTIRKTLERLEIDPERPLITVVSRFDPWKDLFSAIDVYRLVKKEIPEVQLAVVSAMATDDPEGWFFFEKVLRYAGTDEDIKFCTNLKGVGNKEVNAIQRATTVALHTATREGFGLVISEALYKRVPVVARPVGGVKIQVKHGENGYLAWEREDLAGYVVKLIRDEELRRKMGEKGRQTVVENFIITVHLKNYLKLFSDLLR
>NC_009486.1|WP_011943154.1|520938_522054_-|ROK-family-transcriptional-regulator
MPSPLLRKENKIKILRYILRNGKTTRNQLASNLNLAHSTLSYIIDELLDEGFLVFEEIKKERGRPYQILSVNPEKFTAIGVKVGREEVRGVLFDASMNPLKEHRVQILSGMRNNDGYTRALRETIEQLHSENLLGVGICSSGIVKEGKVIVSHVMNVKDWDPRKVLKDLERILVMNDSDALCREISQRVNADFLLVSYGIGIGASLWKDKRIHHLEMGHMLASSEGKCYCGQTGCLEYHSSEYAVLKSCLGKEIDFEDFITSEEEKYRQTIEELREKARKDFDSVKVHYEKAFKTFSVVLGNVIMGSGVSRVFFAGEGVVNEEMIKILEEMVRARFNRDFVGEVQFQVANANWMLGAARAVVDKYLPYIVK
>NC_009486.1|WP_008191950.1|520174_520912_+|hypothetical-protein
MVRIDAKGLHYKKLNDLIWEAIENGEEEIVLDNVCGQRYIGAGIRKKVKIEINGVPGNDLGVFMDGPEIIVNGNAQDGVGNTMNAGKIVVHGHAGDIIGYAMRGGHIYIKRNAGYRVGIHMKAYKENYPVVVIGGFARDFLGEYMAGGLLIVLGLEKDEDGNIAGNYVGTGMHGGEIFLRGTVEEHKLGKEVKIFQPTEEDINRIKPYVEEFCRLFDYDSEEILNGEFIILKPYTHRPYGRLYAY
>NC_009486.1|WP_011943153.1|518909_520187_+|NAD(P)/FAD-dependent-oxidoreductase
MRYVIVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITYLLGRKVTEEKMYYRTEDYLREMRVDIKPATRVEKVIPEEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTGKKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGLKTTEALMELGVKVTIVELADRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSVVLKSGKEIPTKLLVIAIGVKPNVEFLKDSGIEINRGIVVNEKMETNVEGVYAAGDCTEFYDLIDGQRKTIAIWPVAVAQGRVAGYNMAGRNVRYPGGIPMNSVELAGIPTISVGHSNVEDDGYEILTFEEGNTYKKMVLKDNRLIGAILVNDIDRAGIYTGLILQKLDVSSFKDRLLDENFGLVYLPKEFRKKMLEGEIKIWLE
>NC_009486.1|WP_004083227.1|518457_518913_+|4Fe-4S-dicluster-domain-containing-protein
MIAVRRILIREEYCMGCKLCEINCVAAQVGTGNLIKVYRYVPELPEPNVIVEEHDYVTFALQCRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASKCDLCADRGTPGCVEGCPNEALVLVEVRE
>NC_009486.1|WP_004083229.1|516937_518461_+|4Fe-4S-dicluster-domain-containing-protein
MAKRKVPPEFVVERDDYKCIRCLACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLIGIMKQAETGGVLLTSMGNDRPYFSYFDRIVLNASQVTNPSIDPLREPMEIRTYIGRKEEKLEIEEDEDGTVKLKTEIAPQLKLEVPVMFTAMSYGSISLNAILSLARAARTVGTFFNTGEGGLPKELREFKDNMIVQVASGRFGVSADYLNAGSAVEIKIGQGAKPGIGGHLPGEKVTEPISETRMIPVGTDALSPAPHHDIYSIEDLRQLIYAIKEATRYEKPVGVKIAAVHNVAPIAAGAVRAGADYIVIDGIRGGTGAAPKITRDHVGIPIEFAVAVVDQRLREEGIRHMASIVVAGGIRNSADVIKAIALGADAVYIGTAALISLGCHLCQTCYLGKCNWGIATQDPKLTKRLNPEIGARRAANLLRAWAHEIKEILGGMGINAIESLRGNREVLRGVGLHEYELKLLGIKPAGEAW
>NC_009486.1|WP_012895854.1|515811_516945_+|glutamine-amidotransferase-family-protein
MSYDLPRLIPDKDFKVPSACGVSGIMNTSGKRFSGNMIVESMALMRERGNGLGAGYAAYGIYPELKDLYCFHMLYDSDLDKKNAEEYIKDHYEIIESEPIPTRKNPHIKEVHILWRYFLKPKFIPEDMSEEDFVVSTVMFINEKINGAFVMSSGKNMGVFKGVGFPEDIADFYRIDEYKGYIWTAHNRFPTNTVGWWGGAHPFGILDWTVVHNGEISSYGINRRFLEAYGYKCTLMTDTEVVAYLVDLFMRRFGYSPQLTAKILAAPLWKDIDLMPEEERKLYTALRMNYGGALLNGPFAIIVANNNMMMGLNDRIKLRPLVAATKDDFLYIASEESAIRVVCPEPDEVWAPKAGDPVVGVLKSARKTQVVLEGENG
>NC_009486.1|WP_012895855.1|514733_515411_-|response-regulator-transcription-factor
MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKRKIIHTVRGIGYVARDE
>NC_009486.1|WP_011943150.1|513535_514753_-|HAMP-domain-containing-histidine-kinase
MLPVTNERKAFRKTQLIWTAVFTLSILLIVAITVGAVFIVEKRRITSQFDGELRRTADLIERRLKAPGMMGMLRTFRGLDPLFVPRGEAFQFLFPSGEVFLEVGEQIGTPETPVEEGFSTEGNYRIFTKKIDLGDTTIFLRVGKDISDLIERSRRLLSMYLLVILFSAGGAAVFGYFVSSLALLPVRNAYNSLKRFSMDASHELKTPLSVLKTSLDVLKYREDLPDDVKSKLNVMEKNVDKMSKQINQLLLLVKSESSFNGVVKERINLKEFLQQIVNEFKPKAESKGLVLEIDCPEDLFLETEKDTLRVILENLIDNAVKFTEKGKVIVGARKEGRLTIYVQDTGPGIPKKEQKRIFERFYRISRNTEGSGLGLSIVKELASRLKAKVILESEEGKGSTFKLVF
>NC_009486.1|WP_011943149.1|512997_513552_+|thymidine-kinase
MSGKLTIITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEIRKYIEEDTRGVFIDEVQFFSPGLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLKKRV
>NC_009486.1|WP_012895852.1|524343_525309_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MRFFVLGAGSWGTVFAQMLHENGEEVVLWARRKEIVDLINVSHTSPYVEESKITVRATNDLDELKKEDILVIAIPVQYIREYLLRLPVKPFMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQRRISSEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGLGGWDNAKAALETRGIYEVARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARGFDPLKLLESSQQVVEGAFTVKAVMKISEEKKIDMPISEEVYRVIYERKSPLQSMRDLMRRSLKAEFWAS
>NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase
MKYDVVVVGGGPAGLVAAFTTKRFFGDKKILVIKKTEKEMVPCGIPYIFHTLGSVENDYMGIEDRFKSAGIDLLIDEVVDGNPDEKKLLAKSGKEISYDKLIIATGSSPNTPKIPGVDLKDVFTVPKEADYLKLLHEKVKGAKDVVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYRPNSELAKKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGKAEAPDRHPGKFEDTSKLLVKLIFSEDSKILLGAQVCGGKSVGEIVNLISLGIQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIAITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIRPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVRLYQEFHGLIVEHAKKFCSKTPKCGVCPLKKECCHVSQMNGFS
>NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVHPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAVLRREHHEGSVFVRKRI
>NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPACGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein
MRVRHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSKENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNILVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease
MRHLVVSILKNDYFRTKSVLFWNFLFPILLYLILVSIFGDMSSNMNLRIGLVGESSLVESVFSHLPSGIEIIRTQNPERDLKYGKIDVCVILPENFDNLFTKAIIFSKTKISVPVEITILYAPERQESIVLANVVSNILESLDLQLRKVKEVEVEYRKKERQAINYSHYILPAVLLVGVMSVGLFTVPYQLALYREQGILKRILASPLRGHHYFFSIVVCGLFAMSITSASVTLFARFVYGVEFPINVSFLGGVLLSFLTFLSVSLLMVSLFKTFSALRAASQVFNQVFMFLGGFYFDVSGIPWPIKAVVLGNPATYLVDYLRGSFGYRTIYSNHFLVPIVWIVLSLVLFFLNWRRVMMVE

Crispr_ID: NC_009486_2

• CRISPR_ID: NC_009486_2
• CRISPR_location: 536387-537215
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 12 spacers

Consensus repeat of NC_009486_2

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_009486_2

>2.1|536417|35|NC_009486|CRISPRCasFinder,CRT
TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC
>2.2|536482|37|NC_009486|CRISPRCasFinder,CRT,PILER-CR
CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT
>2.3|536549|39|NC_009486|CRISPRCasFinder,CRT,PILER-CR
GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT
>2.4|536618|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
AACTTCATACTCACCGACTACTGCATCAAAAGAAGT
>2.5|536684|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT
>2.6|536750|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG
>2.7|536816|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA
>2.8|536882|38|NC_009486|CRISPRCasFinder,CRT,PILER-CR
CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT
>2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR
CTTTTATCATACCTCATTTTTCCGGATTGTCAAT
>2.10|537014|37|NC_009486|CRISPRCasFinder,CRT,PILER-CR
TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT
>2.11|537081|37|NC_009486|CRISPRCasFinder,CRT,PILER-CR
ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
>2.12|537148|38|NC_009486|CRISPRCasFinder,CRT,PILER-CR
AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC

CRISPR arrays and Neighbor proteins around NC_009486_2

CRISPR arrays

The CRISPR arrays of NC_009486_2

>merge|NC_009486|2|536387-537215|CRISPRCasFinder,CRT,PILER-CR
GTTTCCGTACCTCTAAGGAAGTATTGAAACTACTCAGGGATCCAGCAAAATACCTTCCGTTAGCCGTTTCCATACCTCTAAGGAACTATTGAAACCTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGTGTTTCCATACCTCTAAGGAACTATTGAAACGCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAATGTTTCCATACCTCTAAGGAACTATTGAAACAACTTCATACTCACCGACTACTGCATCAAAAGAAGTGTTTCCATACCTCTAAGGAACTATTGAAACCGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCTGTTTCCATACCTCTAAGGAACTATTGAAACTCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCGGTTTCCATACCTCTAAGGAACTATTGAAACGCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTAGTTTCCATACCTCTAAGGAACTATTGAAACCCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTTGTTTCCATACCTCTAAGGAACTATTGAAACCTTTTATCATACCTCATTTTTCCGGATTGTCAATGTTTCCATACCTCTAAGGAACTATTGAAACTGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCTGTTTCCATACCTCTAAGGAACTATTGAAACATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCGGTTTCCATACCTCTAAGGAACTATTGAAACAATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCCGTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|2|2|536387-537215|CRISPRCasFinder
GTTTCCGTACCTCTAAGGAAGTATTGAAAC	TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AACTTCATACTCACCGACTACTGCATCAAAAGAAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTTTATCATACCTCATTTTTCCGGATTGTCAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|2|2|536387-537215|CRT
GTTTCCGTACCTCTAAGGAAGTATTGAAAC	TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AACTTCATACTCACCGACTACTGCATCAAAAGAAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTTTATCATACCTCATTTTTCCGGATTGTCAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|2|2|536452-537215|PILER-CR
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AACTTCATACTCACCGACTACTGCATCAAAAGAAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTTTATCATACCTCATTTTTCCGGATTGTCAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC
GTTTCCATACCTCTAAGGAACTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|273568
NC_009486.1|WP_011943170.1|545367_546096_+|KaiC-domain-containing-protein	unknown	unknown	gnl|CDD|235281
NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein	unknown	unknown	gnl|CDD|225140
NC_009486.1|WP_008193527.1|538645_539233_+|phosphate-propanoyltransferase	unknown	unknown	gnl|CDD|237899
NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274317
NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|223672
NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|378925
NC_009486.1|WP_011943167.1|537841_538567_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|376667
NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|181342
NC_009486.1|WP_011943166.1|535386_536292_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_009486.1|WP_011943168.1|539262_539706_-|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl|CDD|223149
NC_009486.1|WP_011943171.1|546092_546539_+|transcriptional-regulator	unknown	unknown	gnl|CDD|224237
NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380315
NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380325
NC_009486.1|WP_011943172.1|546548_547658_-|MFS-transporter	unknown	unknown	gnl|CDD|340883
NC_009486.1|WP_004083187.1|539721_541512_-|molecular-chaperone-DnaK	unknown	unknown	gnl|CDD|234715
NC_009486.1|WP_011943173.1|547797_549780_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|223910
NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|163244
NC_009486.1|WP_004083185.1|544737_545196_-|arginine-repressor	unknown	unknown	gnl|CDD|130592
NC_009486.1|WP_048810855.1|541745_544748_+|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl|CDD|223911

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase	gnl|CDD|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_009486.1|WP_011943170.1|545367_546096_+|KaiC-domain-containing-protein	gnl|CDD|235281	PRK04328, PRK04328, hypothetical protein; Provisional.	1.51705e-172
NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein	gnl|CDD|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.43462e-94
NC_009486.1|WP_008193527.1|538645_539233_+|phosphate-propanoyltransferase	gnl|CDD|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	5.00867e-130
NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	7.83215e-66
NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	3.1365e-19
NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease	gnl|CDD|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.87991e-15
NC_009486.1|WP_011943167.1|537841_538567_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.82991e-25
NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_009486.1|WP_011943166.1|535386_536292_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.87897e-98
NC_009486.1|WP_011943168.1|539262_539706_-|Hsp20/alpha-crystallin-family-protein	gnl|CDD|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	2.67047e-34
NC_009486.1|WP_011943171.1|546092_546539_+|transcriptional-regulator	gnl|CDD|224237	COG1318, COG1318, Predicted transcriptional regulators [Transcription].	1.28084e-37
NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein	gnl|CDD|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.30372e-80
NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein	gnl|CDD|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	2.69366e-95
NC_009486.1|WP_011943172.1|546548_547658_-|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.88254e-38
NC_009486.1|WP_004083187.1|539721_541512_-|molecular-chaperone-DnaK	gnl|CDD|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_009486.1|WP_011943173.1|547797_549780_-|methyl-accepting-chemotaxis-protein	gnl|CDD|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	7.51587e-68
NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase	gnl|CDD|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	7.41689e-78
NC_009486.1|WP_004083185.1|544737_545196_-|arginine-repressor	gnl|CDD|130592	TIGR01529, Arginine_repressor., arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family, Regulatory functions, DNA interactions].	1.02883e-68
NC_009486.1|WP_048810855.1|541745_544748_+|efflux-RND-transporter-permease-subunit	gnl|CDD|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0

Protein sequences

>NC_009486.1|WP_011943166.1|535386_536292_-|ABC-transporter-ATP-binding-protein
MVVLHSKGGFFLEILKVVDLKKHYGDVKAVDGISFTVERGTVFSFLGPNGAGKTTTVEILESLRKKDSGEIYYFGERKDVLDRETKRKIGVCLQKSAFFENLTVWETLKLFRGLYGTGLDLKEVMGLFSLENIEKKMVKTLSGGQLQRLAVAVAFINDPEIVFLDEPTTGLDPQARRQIWDTIEHFKNLGKTIFLTTHYMEEAERLSDHVCIIDHGKIIAEGTPSSLISSSGLKTVVEFDCDQDVNVRYLEKKENHYVVETDAPEELIKDLLKNWNVSNIVIRKPNLEDVFLKLTGRDLRE
>NC_009486.1|WP_011943165.1|534304_535390_-|ABC-transporter-permease
MRHLVVSILKNDYFRTKSVLFWNFLFPILLYLILVSIFGDMSSNMNLRIGLVGESSLVESVFSHLPSGIEIIRTQNPERDLKYGKIDVCVILPENFDNLFTKAIIFSKTKISVPVEITILYAPERQESIVLANVVSNILESLDLQLRKVKEVEVEYRKKERQAINYSHYILPAVLLVGVMSVGLFTVPYQLALYREQGILKRILASPLRGHHYFFSIVVCGLFAMSITSASVTLFARFVYGVEFPINVSFLGGVLLSFLTFLSVSLLMVSLFKTFSALRAASQVFNQVFMFLGGFYFDVSGIPWPIKAVVLGNPATYLVDYLRGSFGYRTIYSNHFLVPIVWIVLSLVLFFLNWRRVMMVE
>NC_009486.1|WP_011943164.1|532349_533315_+|nitroreductase-family-protein
MRVRHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSKENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNILVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_009486.1|WP_011943163.1|530312_532268_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPACGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_009486.1|WP_048810854.1|529795_530347_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAVLRREHHEGSVFVRKRI
>NC_009486.1|WP_011943161.1|529169_529670_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVHPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_009486.1|WP_011943160.1|528478_529141_-|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIAITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIRPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVRLYQEFHGLIVEHAKKFCSKTPKCGVCPLKKECCHVSQMNGFS
>NC_009486.1|WP_011943159.1|527152_528502_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_009486.1|WP_011943158.1|526771_527107_+|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NC_009486.1|WP_011943157.1|525415_526747_+|FAD-dependent-oxidoreductase
MKYDVVVVGGGPAGLVAAFTTKRFFGDKKILVIKKTEKEMVPCGIPYIFHTLGSVENDYMGIEDRFKSAGIDLLIDEVVDGNPDEKKLLAKSGKEISYDKLIIATGSSPNTPKIPGVDLKDVFTVPKEADYLKLLHEKVKGAKDVVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYRPNSELAKKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGKAEAPDRHPGKFEDTSKLLVKLIFSEDSKILLGAQVCGGKSVGEIVNLISLGIQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NC_009486.1|WP_011943167.1|537841_538567_+|sulfite-exporter-TauE/SafE-family-protein
MIVLVFLGGILAGFLNVLAGGGSMITLPILTALGLGIDVANGTNRIAIILQNLVAIERFKAKKVLKIKEAILVALPAIVGAILGSSIAVQIEKELLQKIVGVIFLVMAVSLVWKPRIWLEDRSVKRNWVLIYIAFFLIGIYGGFIQAGVGFLLMPAITLLLGYELVKTNAIKVFIVASYNIISLIIFILNGKVNFLYGLILALGNMTGAWLAATFSVKKGANWVRWIVFAAIIVVGIRYVF
>NC_009486.1|WP_008193527.1|538645_539233_+|phosphate-propanoyltransferase
MTKKEPGIIVGVSNRHVHLSKEDLEILFGKGYELTPIKDLRQPGQYAAKETVTIVGPKGAIENVRVLGPVRRETQVEISRTDAFKLGLRPPVRDSGDLEGTPGIVIIGPNGILVKEKGVIIAKRHIHMHPKDAEHYGVKDKDLVKVIVESGDRKLIFDDVLIRVREDFALEFHVDTDEANAAMLNTGDFVYIVEF
>NC_009486.1|WP_011943168.1|539262_539706_-|Hsp20/alpha-crystallin-family-protein
MLLGRREDIFRPFRELQREIDRLFDDFFRTEVRPAKEFFAPDMDVYETDDEVVIEVEIPGIDRKDVKITVEENILKISGEKKVEREQKGKNYYYVERSAGKFERAIRLPDYVDAEKIKAEYKNGVLTIRVPKKEERKRKVIEVEVQE
>NC_009486.1|WP_004083187.1|539721_541512_-|molecular-chaperone-DnaK
MAEKKEFVVGIDLGTTNSVIAWMKPDGTVEVIPNAEGSRVTPSVVAFTKSGEILVGEPAKRQMILNPERTIKSIKRKMGTDYKVRIDDKEYTPQEISAFILKKLKNDAEAYLGGEIKKAVITCPAYFNDAQRQATKEAGIIAGLEVLRIINEPTAAALAYGLDKAGKEEKVLVYDLGGGTFDVSILEIGEGVIEVIATAGNNHLGGDDFDQRLIDWMAEEFKKQHGIDLREDRQALQRLRDAAEKAKIELSTKMETDVSLPFIAVSPSGQPLHLEMRITRSLFESLTRDLVEMTRGPIEQALNDAKLSPQDIDEIILVGGMTRVPMVQRFIKEFFGKEPNKSVNPDEAVAIGAAIQAAILAGTEGAKGRDIVLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRVYQGERPIARENIFLGSFKLVGIPPAPRGVPQIEVTFDIDSDGIVHVSAKDLGSGKEQSMVVTGRHKLSEDEIKRMIEDAKRYEEQDKRLKEEIELKNRADDLAYSVEKTLKEHGDKIPADLKSRLEDMIRELRDAINRNDIPKVKMLFDDLQKESMKIGEYLYKSATGGETSNQ
>NC_009486.1|WP_048810855.1|541745_544748_+|efflux-RND-transporter-permease-subunit
MKIAEISSRRPIAIFMLLTAVVFLGFISFQHLKLDFLPQIEYPYAVVITTYMGAGTEEVEELVTKPLEGYISSTPGVRRFTSMSMDSVSFILVEFDWNVKTSEAVGRLSRYVDLATRDLPEGANPVVVEFDPSLLPVYAFSTEDDYEDVVSKIKRLPEVASVEVMGKPEKIVEVILDQEKIKRFDVDPSLIETILSGNLVYPFGYVSDSEGNIYPVSVDGRFENIEDLKNTIVGFRGVKYQSLLQGKVPNILVPVRLRNIAEVNITNESVQGEVRVNGKKASLIAIYKRSGANTVKTVREIKRILRDSKINYIEAMNQAYYTERAIDNLLKNLLYGFIAAFVVVLIFLKDFTSTIVTSFSIPLSLTITFVLLYAFGLNLDTLTLGGLIMALGMLVDNSIVVFENIYRHRSLGDPIPDAARKGAGEVWLAILASTLTTVSVFLPIVFFTGFVVRLFKYFAIAFVFALSSSLFVSTVVVPAGTRWIKPRRGKLTEALQKHYRKALEWCLKRKKLVLVISFALVAISVIYLLSKPLGFLPSFQTNLMVIDVKLPSQSSYEKTTEAVEQIEDYLNKHRNEYKISSFYSEVGITNIYSQIMGRGQNEARIMVNLGGSRREFAKNREKLKNAISQLNIPEAKIEVLEQSQQIYEILGYPVTIEVRGDDLSLIQEKAKEIFERLRELQEVKKIQIRNSFEKEVLHVKIDRNKALMNGVVTGQVFLDLQTYLLGKKIGTLRTEEGTLPIVLKKAKSLSPEDLSKISLTGLKGDVSLGAVSNISRETLPSIVEHSDGERVVYVDLVSIEGSIGEVAKKVENLLNEIDLSGVKVEITGQKSFMDEAFSELQYVVYIAIALVYMILAAQFESFTLPFIIFFTIPFAVVGVAFAVFVNGYSLNVPVLVGLLTLSGTVVNNAIVMLTRIEQIRQEKGLLEATLEGAQSRLRPILMTTFTTIVALLPTALSHAEGSEIESPISWVVIFGMLISMLFTLFVIPVIYTAIRRKVRV
>NC_009486.1|WP_004083185.1|544737_545196_-|arginine-repressor
MKISKKRRQELIRKIIHEKKISNQFQIVEELKKYGIKAVQPTVARDLKEIGAVKIMDESGNYVYKLLDETPVIDPWKELKRNFKSFVESIDRAGNLIVIKTIPGTASGIARVIDRLDIDEIVGTLAGDDTIFVAVRDPESCEKIVEKLSSIL
>NC_009486.1|WP_011943170.1|545367_546096_+|KaiC-domain-containing-protein
MIKKVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVKDIDDVRELAEVLKRAVKETQAKRVVIDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIHPSEGGEEK
>NC_009486.1|WP_011943171.1|546092_546539_+|transcriptional-regulator
MKLNFNPVTKEEIHQLEIALLVGTLFRKEVLEEIRNSAERLTWVDSLAVAAGALARAKAGMTASEIAEELGRTEATIREHVKGETKAGKLVNETYELLKEGKLSVEGLIGEGIKVVTTTTTGSDEKLQEVKKELEEIKQKLESVIQKL
>NC_009486.1|WP_011943172.1|546548_547658_-|MFS-transporter
MFFLTNVFRSMGTMSFNLLIQLRMKEIGATLFMIGLLSSLQGAMNTFSNVFWGRISDKIGKRKVFIILSLVLASAFYPLYAVINVPSAFLFVSMIIAFFNGMYPPAAMALSSTAKRMSLGFSLYNSSNSLGMLLSRISIGFLLMFMDLKLAFVFFSIVVAVSVIPALGLKEEKIQKKKEEDFHFGRKVMEHGIWALYLGSLLRQMGTSGSMSLIAVYLNERFHYSASTIGFVTAVNPLIQIPSHFFFGKLVEKTDPKFISVLGIFMSSLVPFLMMIPENWAPVLAYAFLGASFGAFINGSNNFLGRRFHYLQRGRALGLLSSARFLGATIGPFLAGLLAEKSYSLMFSTLGLAVLSGGIVVLLFTKDGD
>NC_009486.1|WP_011943173.1|547797_549780_-|methyl-accepting-chemotaxis-protein
MKKLPVFWKIMIIVLILGAGITFVGTLSTITIRSKLLEQTDINLLTQSEGSADALWNFLQAHTQLVDLLSRDEGVINLYRDETNEEDVKSLFEKVLKSYPNVMNVYVGLKDGRMYLVPEQELPEGYDPRVRPWYKDAVAKLGKIVITDPYADASTGKTIITIAKAVQIGQEIVGVLGLDFDCSKLVDELFKKGVEKGYMSALVDENGTITLHSKKDYIGENIKDTDFFKKWHAGSESGVFGYVFDGIPRRTGYKKLPNGWIYAIVVPEEIVYSEVKESTVVLITITLVSLVAAIVFALFMSRRYISEPLKHLASISDKIAGGDLTVEIQLNSKDEIGKLGNALTHMVKSLREIALNIKNNSSEIKRNAESVASVAQEVSSTIEEVTSQVENVESNVSNTSASIQELTSGVEEVAASAQNVSRAAQDLSEKSTQVSESAKEGEKAIKEIVEMIKQARSRAEQTASVVEELNEHARNIGQILDTINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKSATEKIGQILNQISQEVVKANEETRGTVQAVENISSRAEVVASQFDRIAQGISSIVSQIQNLAAIAEEQSAAAEEMSSAMDNASRSMVEVAEQMNEIAEAMKQQAKAVNTLSEAMNKLDQIAEKLEKGMEVFKL

Crispr_ID: NC_009486_3

• CRISPR_ID: NC_009486_3
• CRISPR_location: 568240-568733
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 7 spacers

Consensus repeat of NC_009486_3

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_009486_3

>3.1|568270|35|NC_009486|CRISPRCasFinder,CRT
TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
>3.2|568335|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
>3.3|568401|38|NC_009486|CRISPRCasFinder,CRT,PILER-CR
GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
>3.4|568469|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA
>3.5|568535|37|NC_009486|CRISPRCasFinder,CRT,PILER-CR
ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG
>3.6|568602|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
>3.7|568668|36|NC_009486|CRISPRCasFinder,CRT,PILER-CR
TAAAGGATATGAGATACTCACTACTGAGAAATCATT

CRISPR arrays and Neighbor proteins around NC_009486_3

CRISPR arrays

The CRISPR arrays of NC_009486_3

>merge|NC_009486|3|568240-568733|CRISPRCasFinder,CRT,PILER-CR
ATTTCCATGCCTCTAAGGAAGTATTGAAACTTAAGATGTCTATACCGGGCATTCTACAAAACAGCGTTTCCATACCTCTAAGGAATTATTGAAACGTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGTGTTTCCATACCTCTAAGGAACTATTGAAACGATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGAGTTTCCATACCTCTAAGGAACTATTGAAACTATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCAGTTTCCATACCTCTAAGGAACTATTGAAACATATCACACATTTCACTGTGTGTCAATAACGAAAAAGGTTTCCATACCTCTAAGGAACTATTGAAACATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAAGTTTCCATACCTCTAAGGAACTATTGAAACTAAAGGATATGAGATACTCACTACTGAGAAATCATTGTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|3|3|568240-568733|CRISPRCasFinder
ATTTCCATGCCTCTAAGGAAGTATTGAAAC	TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|3|3|568240-568733|CRT
ATTTCCATGCCTCTAAGGAAGTATTGAAAC	TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_009486|3|3|568305-568733|PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAAGGATATGAGATACTCACTACTGAGAAATCATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_008193575.1|566264_566969_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NC_009486.1|WP_083756012.1|560300_561494_-|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|341465
NC_009486.1|WP_011943187.1|562963_563950_+|TolC-family-protein	unknown	unknown	gnl|CDD|224455
NC_009486.1|WP_011943197.1|576986_578228_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NC_009486.1|WP_011943194.1|571808_572939_-|chorismate-synthase	unknown	unknown	gnl|CDD|272865
NC_009486.1|WP_011943189.1|565260_566268_+|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|273776
NC_009486.1|WP_004083127.1|574955_575717_-|prephenate-dehydrogenase	unknown	unknown	gnl|CDD|223364
NC_009486.1|WP_011943186.1|561590_562796_-|threonine-ammonia-lyase	unknown	unknown	gnl|CDD|236182
NC_009486.1|WP_011943188.1|563965_565264_+|TolC-family-protein	unknown	unknown	gnl|CDD|367035
NC_009486.1|WP_011943193.1|570382_571861_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	unknown	unknown	gnl|CDD|172457
NC_009486.1|WP_011943195.1|572935_573697_-|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|223247
NC_009486.1|WP_011943184.1|559101_560010_-|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl|CDD|224513
NC_009486.1|WP_164819368.1|578240_578417_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_004083158.1|560012_560219_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943192.1|569951_570386_-|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|235443
NC_009486.1|WP_011943190.1|566955_568170_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_009486.1|WP_011943196.1|573693_574959_-|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl|CDD|235037
NC_009486.1|WP_011943183.1|558017_559088_+|glycosyltransferase-family-4-protein	unknown	unknown	gnl|CDD|340831
NC_009486.1|WP_011943191.1|569356_569959_+|LysE-family-transporter	unknown	unknown	gnl|CDD|280058
NC_009486.1|WP_004083125.1|575713_576730_-|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl|CDD|181535

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_008193575.1|566264_566969_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.69942e-125
NC_009486.1|WP_083756012.1|560300_561494_-|iron-containing-alcohol-dehydrogenase	gnl|CDD|341465	cd08186, Fe-ADH-like, Iron-containing alcohol dehydrogenase. This family contains iron-containing alcohol dehydrogenase (ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols, preferentially from C2 to C8, but is also active towards methanol and glycerol, and is stereospecific for monoterpenes. It has been suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.	0
NC_009486.1|WP_011943188.1|563965_565264_+|TolC-family-protein	gnl|CDD|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	1.5335e-11
NC_009486.1|WP_011943187.1|562963_563950_+|TolC-family-protein	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.56892e-15
NC_009486.1|WP_011943197.1|576986_578228_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.14348e-72
NC_009486.1|WP_011943194.1|571808_572939_-|chorismate-synthase	gnl|CDD|272865	TIGR00033, Chorismate_synthase, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. [Amino acid biosynthesis, Aromatic amino acid family].	6.61219e-168
NC_009486.1|WP_011943191.1|569356_569959_+|LysE-family-transporter	gnl|CDD|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	5.71854e-38
NC_009486.1|WP_004083127.1|574955_575717_-|prephenate-dehydrogenase	gnl|CDD|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	9.77158e-66
NC_009486.1|WP_011943186.1|561590_562796_-|threonine-ammonia-lyase	gnl|CDD|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NC_009486.1|WP_011943189.1|565260_566268_+|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.54011e-34
NC_009486.1|WP_011943193.1|570382_571861_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	gnl|CDD|172457	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB.	0
NC_009486.1|WP_011943195.1|572935_573697_-|shikimate-dehydrogenase	gnl|CDD|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	1.6478e-82
NC_009486.1|WP_011943184.1|559101_560010_-|diacylglycerol-kinase-family-lipid-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.30082e-92
NC_009486.1|WP_004083125.1|575713_576730_-|3-deoxy-7-phosphoheptulonate-synthase	gnl|CDD|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NC_009486.1|WP_011943190.1|566955_568170_+|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.45826e-51
NC_009486.1|WP_011943196.1|573693_574959_-|3-phosphoshikimate-1-carboxyvinyltransferase	gnl|CDD|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_009486.1|WP_011943183.1|558017_559088_+|glycosyltransferase-family-4-protein	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.75297e-21
NC_009486.1|WP_011943192.1|569951_570386_-|type-II-3-dehydroquinate-dehydratase	gnl|CDD|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	5.66011e-87

Protein sequences

>NC_009486.1|WP_011943190.1|566955_568170_+|ABC-transporter-permease
MEILKEVLRSLLANKMRTFLSMLGIVIGVTAVIMVMSLGAGMKESVTERLTSLGSNIIMITPGFTGGRGGTIAQSVESLEEDDVEDILKMCPSVDKAIGLVNGSFLVQYRETNTRSNVYSAPADIFHILNLKVSSGRTFSQEDNTANVAIIGQEVAYNLFGNENPLGKKIYLVQGNRKLVFEIIGIFERTGSILMFNPDNMILIPYETGKFRVFQTHGKVSMILATSKSADVAQRAVMEIDHLLYTKFHEEESYYNIISQQAILNVVSESVSIINLVLVAITAVSLIVGGIGIMNIMLVSVVERTREIGIKMAIGASRLRILLEFLVESVVITFVAGAIGVALGILGSNTIVNTFGSQYGLKAVIDPLSVIVAFGVSASVGLFFGFYPAYRASRLSPIEALRYE
>NC_009486.1|WP_008193575.1|566264_566969_+|ABC-transporter-ATP-binding-protein
MKKVMELVDVWKIYDLGEVKVEALRGVSFEVFEGEYVIIIGPSGSGKSTLLHILGCLDRPTKGKVLIEGEEVSRMGDRRLAQVRNRKIGFVFQSYNLLPRLTALENVELPMIYAGVPAKERKRRAKELLELVGLGDRLHHRPNQLSGGQQQRVAIARALANDPVFILADEPTGNLDTKTGEEILELFRKLHEMGKTLVVVTHNLEMVDEGTCIVRIRDGKIEGVERRGVVYGDT
>NC_009486.1|WP_011943189.1|565260_566268_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKWITLLIIAVLVVLVIVVIFLNRASAQTVSEKDATSTQAPVYLTYTVTKENETVEIVGQVTADTKKVTSKVSGDVLEIYVEEGDVVQVGQKIAKIDDTDYQISYLSALNSYKTSPTEINRLNLEKAKENLENTTVVSPVNGVVQSVNVDVGDRVSVGTSIVTIVETDTLRVEGSISEYDLKNVKEGMKAVFTFEQLGLTLTGKVKRISPVAETSGGVTVIPVEFSFDQIPPSLVIPGLTCDVEIIIKEATSSFFVPKEAVSQDQNGYYVMKQTPQGPQKVYVEVGEELNDKIEIKKGVSEGDVLLLIPSQQEIQRLRTRQGLPMFGPGGGRAR
>NC_009486.1|WP_011943188.1|563965_565264_+|TolC-family-protein
MKRFFLVFLLVPVFLVGNVFDLFEENLKNSSGYWSSVEKFKEAQLNYKRYTNFWNPEISVSLGKTGITITEVSLGKTGITITEDGISDFSISPIVNFVNIYGFELGLSFPISVNTDDWSFNFEGTQLSVSRNLKTEYTVDKLKTEANYLSSKYSLKSTKNSIFIQTVQDIFDWYYYTKKIEILSQRLQVLNEKLSKAKDDDEKKALEKQILSTEQTLRSAEYSLQTIQTKNIDEEVYQKTRKFLEGVTLPATTLEYREDLKALELQKKAEEIEKKTWFLPYLPELTFSFNYDFEDSEWLIGIGFQMTLWDFGERKLEAEKRKSQLVSLEYQEKVRNIENSLSQELVNIANLESQLRQKEIELEDLEESSKTNDQLFRKGFLSEEDYTLSKLDYVEGTLEKENLENSLILEKLKYISILGYDLEKFLKEGDQN
>NC_009486.1|WP_011943187.1|562963_563950_+|TolC-family-protein
MKNLFVVLLSLVSVLSFSVSLNDVLQTALASSTDYQIAQINLESATMDYEKAKLEATNKRSELSAELSYYNNLQSYRNSLKSAYQDVLGRIFNLLTADLSYEIAQLNFENAQEDYKTSQELFKKNLISENDLKDSELTLEEASNNLLSAQKDLEEAQKDYEEIFSVEVSEIELPLIDYQNLVSEDEYLDNLSSVKIAELNMKIAEYDLNNLSASASKYEQKKAELNYKKSKMNYDEALKEAKDSYKSTLDSLEIAFLNLKVLKEKVDLNENILKDYQERYEKGLISKKELNTQKINLLNTKKNYFNSLRSYYTSIVNFLIDAGKEVSF
>NC_009486.1|WP_011943186.1|561590_562796_-|threonine-ammonia-lyase
MITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAHLSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPKYAPLSKITKTRNLGAQVILEGNIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGGLISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTFELVKKYVDEMVVVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNKLDVKGKKVAIVISGGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGALKELLGIVAELGANVLSVFHNRSAKEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVRIVV
>NC_009486.1|WP_083756012.1|560300_561494_-|iron-containing-alcohol-dehydrogenase
MNIKNVIEIRTKTTCYFGAGALAKIEDILDFLKERGIKSVVVVSDKVAYKVTGAWDKVKPALEKRGIEYVVYDDVTPNPTTEQINEATKKALEINAQAVIGIGGGSPIDTAKSVAILLEYPEKTAEELYEQKFIPEKAKPIIAINTTHGTGTEVDRFAVASILEKEYKPPIAYDCIYPTFSIDDPELTKSLPEKQSIYTSLDALNHITEAATTSLGNPFSINLARNTVELISEYLPEVLKKPDNLEARYFLMYASAIAGISFDNGMLHLTHALEHPLSAIKPDLPHGLGLAMLLPAVFKYTYKAKPQILAYVYQPIIPDLKGRPNEAEEAVSKLEQWIFNLGVKEKLADVGFSEKDIPKLVKLAFETPALDLLLNLAPMKVDENLVEAIYKESLKPY
>NC_009486.1|WP_004083158.1|560012_560219_-|hypothetical-protein
MRFVSDFLFFAGFGLLFIAIVFFDLGTRAIKKKQNQKKKFYDKKGWQFLSVSLGAFAVSILLALIGRG
>NC_009486.1|WP_011943184.1|559101_560010_-|diacylglycerol-kinase-family-lipid-kinase
MVFLIYNPAAGGGRAGKIWDRVEDLLKKHGIDHKVAFTKRPGHAMEISKKAFKEGYRRIAAFGGDGTVNEVVNGIFLNGYDLREVVFGWIPFGSGKDWARTIGVPLEIEEAIKTLKDGKEFVQDLGVGEYEKASGEIEKRAFVNVAGLFFDGFVTYRTNLLKRKNRVSYFSRIFSSIIEYDPPTARIQIDEKVWEKRVFSMNVGTCKYNGGGMNQLPHAVPDDGLLAVTVINDIGKLRILANLHRVFNGKLLEHPGVEGYQAKKVVVEFQRDEPVEFDGESFWAKKIFFSIIPGVIRVLVKK
>NC_009486.1|WP_011943183.1|558017_559088_+|glycosyltransferase-family-4-protein
MKIGFLSRWGATCGVGMHAEILAREFIRMGHEVVVFAPTEESASKEVKYYKRTEAQDPEFVKREIYTEVDNVTEEGWVKEEEILKENLDLLIIETFWRVPVKPLTRLIEKLKIPVISVFHEANIFKAREVVKLPCDKIVVFDRRFYDEILEFYEIPREKVEVISYPVMKPYDVEPERPVSEDKFLFFSFGRQPVEEYCDFLNALKKLRKRFDNVHYWIIRSDGRVDYEAEWITQWQKRPTVEKLYSYLKGSNVHLLPKGNTPNVVVSSTLYQIIASETPIVIRDSRFVETIETDAYGFGPIVKYRNIHDLVHKLELLMLDREQVEDIKKEVRVFVEKYGGDKIAQEFLDLAKTITK
>NC_009486.1|WP_011943191.1|569356_569959_+|LysE-family-transporter
MISIFFGSFLVGLSGAVAPGPLMMIAISQSAKGWKNSIKLISGHVVLEAFLVLLLVLGFQWVLKSPLVTKVIGLLGGSFLAFMGISQLTAIKGEISQVEKNDLKIPLPITGALVSLSNPYFLLWWMSVGSAFLVKAQTSFLAGVTAFYFGHILSDILWYSLIGVFGNTILKSSRIYKIVMAVTGLFLIGFGLFFVLDSFR
>NC_009486.1|WP_011943192.1|569951_570386_-|type-II-3-dehydroquinate-dehydratase
MKVLVVNGPNLNMLGKRDKNIYGNFSHEDLVKMIEDWGRKNDVEVEVFQSNHEGEILDRLHRLDFDGLVINPGAFTHYSYAIRDALEIVKVPKVEVHISNIHRREEFRRRSVTAEVCDGQISGLGVYGYLLALEYIKKKLEELT
>NC_009486.1|WP_011943193.1|570382_571861_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB
MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRRVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEFRGIDTSKLNEWETTALVVLEALDEKEISTIEKPHLVKIILGGFKRVRNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFDEPEKIEKRNLRVLSEMVKISVEDKARIVMEDPYDMGLRHALNLGHTLGHVYEMLEGVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIVPIPVPSVDVEKARNLILNDKKILKGSRVRLPYVKEIGKIEFLEVDPLELLEVVD
>NC_009486.1|WP_011943194.1|571808_572939_-|chorismate-synthase
MRLTIAGDSHGKYMIAVLEGIPAGLKIDEEIIRRELFRRRNCYGRGKRMSMEEDAFEIVSGVWGGITTGAPVTILVPNKAGNPVKDVRSVPRPGHIDYAAFVKYKLPDLNVYVERSSARWTVALTAAGALLKSLLREFNIDVLGFVTRLGNVEAKNIPDNFEELRRKRDESAVFCPDPEATEGMISEIDRAKEEGNTLGGKVKVIARGVPAGIGSYSDLFKKLDSKIGSLFFAIPAVKGVVIGSEEMWYGFDYLDEFELEDGRIKRRTNNLGGIEGGITNGEDVWVNVFVKPIPTTGKPLNSVDLRTMEPAKTPYVRSDVTAVPPASVVCEAALAVVISDALLEHLGDGNIDDLKRRFGNENLPRWDDGFWKEYDR
>NC_009486.1|WP_011943195.1|572935_573697_-|shikimate-dehydrogenase
MKFCIIGYPVSHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYDGFNATIPHKERVMRYVEPSEDAQRIKAVNCVFRGKGYNTDWVGVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEKLTVSEASLKGLYLVYDVVYFETPLVSDAKRLGVEHVVKGNLMFYYQAMENLKIWGIYDERSFKEVFEEVLR
>NC_009486.1|WP_011943196.1|573693_574959_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKVLPAKKVEGVLSVPPDKSITHRALILSALAETESTLYNLLRCLDTERTHDILEKLGTRFEGDWEKMKVFPKPFAEPIEPLFCGNSGTTTRLMSGVLASYEMFTVLYGDSSLSRRPMRRVIEPLEMMGARFMARQNNYLPMAIKGNHLSGISYKTPVASAQVKSAVLLAGLRASGRTIVIEPAKSRDHTERMLKNLGVPVEVEGTRVVLEPATFRGFTMKVPGDISSAAFFVVLGAIHPNARITVTDVGLNPTRTGLLEVMKLMGANLEWEITEENLEPIGTVRVETSPNLKGVVVPEHLVPLMIDELPLVALLGVFAEGETVVRNAEELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQSIKGGSVDPEGDHRMAMLFSIAGLVSEEGVDVKDHECVAVSFPNFYELLERVVIS
>NC_009486.1|WP_004083127.1|574955_575717_-|prephenate-dehydrogenase
MKISVLGAGCIGGSIALKLKEKHHVTAFDRDEETMKALEENGIETVSKESDLYDTDLLVLALPMSVEERFLKETDFSGKILDVASVKTPFMEIARERGLNFTGGHPMAGNERKGKSGWDREMFDGKIFFLCSLDGKEDGMIENIVKDLGARPLWIDYRIHDEIVAAVSHVQYLISLSARYVGKPFEEYAGPGYLSNTRLSKQNMEMALDMIRYNKENILKYLENARNFLNVLYHLTEKEDFENLKKVIREVIS
>NC_009486.1|WP_004083125.1|575713_576730_-|3-deoxy-7-phosphoheptulonate-synthase
MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN
>NC_009486.1|WP_011943197.1|576986_578228_-|MFS-transporter
MNELLHWKRNFFLLALGRFVSILGSSIQAVAIPLFVLDLTHSGSAVALMTVAYMVPRILFTPIAGIVGDRGDRKFLMVSMDFLRGFLICFLALLAFRNSVTLPVLYVSQIAMAVMDNLFDIPTGAMFPDIVPQDFLMRANSIMGMVRIFPQILGPALGGVIYGFYGIAIVFLVNGVSFVLSAISEIFIVYSRKVEKKPAKFSQILEDLKEGFLFIWNHELIRTILIFALFLNLLISPLFMVVYPYTIREVMKFSAQEFGFLETSFTLGALLGNFLIASYLSKKNMWKAMKISIFLFELPIVFLGFLVMPDFSLNRLVLFSLFFITFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFLILVANGVTPLGSVLYGYLVDRVPVHFLYYIVGALSFLVAVLLLVALRGKELPT
>NC_009486.1|WP_164819368.1|578240_578417_-|hypothetical-protein
MKVYLMVSTILVVMLFSLIWLYVLFFSTVETAPSSPAVWELGVTETSSAMVPGSLQDR

Crispr_ID: NC_009486_4

• CRISPR_ID: NC_009486_4
• CRISPR_location: 940034-941261
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 18 spacers

Consensus repeat of NC_009486_4

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAA	CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_009486_4

>4.1|940064|35|NC_009486|CRISPRCasFinder
AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA
>4.2|940129|35|NC_009486|CRISPRCasFinder
AACAACATTTATGAATACAAGATCGTCGTCCAACT
>4.3|940194|37|NC_009486|CRISPRCasFinder
TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA
>4.4|940261|36|NC_009486|CRISPRCasFinder
AGGTGTTTGACAACACGAAACAATGGGAAGACATCA
>4.5|940327|37|NC_009486|CRISPRCasFinder
AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT
>4.6|940394|37|NC_009486|CRISPRCasFinder
AAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA
>4.7|940461|36|NC_009486|CRISPRCasFinder
TTTGCGAACGTACGAGATTTTTTTCACATATCATAA
>4.8|940527|37|NC_009486|CRISPRCasFinder
AGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT
>4.9|940594|36|NC_009486|CRISPRCasFinder
AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT
>4.10|940660|37|NC_009486|CRISPRCasFinder
TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG
>4.11|940727|37|NC_009486|CRISPRCasFinder
AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC
>4.12|940794|37|NC_009486|CRISPRCasFinder
AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT
>4.13|940861|36|NC_009486|CRISPRCasFinder
TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG
>4.14|940927|39|NC_009486|CRISPRCasFinder
CATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA
>4.15|940996|36|NC_009486|CRISPRCasFinder
AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT
>4.16|941062|36|NC_009486|CRISPRCasFinder
ACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA
>4.17|941128|36|NC_009486|CRISPRCasFinder
CCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG
>4.18|941194|38|NC_009486|CRISPRCasFinder
GTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT
>4.19|940054|45|NC_009486|CRT
GTATTGAAACAAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA
>4.20|940119|45|NC_009486|CRT
GTATTGAAACAACAACATTTATGAATACAAGATCGTCGTCCAACT
>4.21|940184|47|NC_009486|CRT
TTATTGAAACTGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA
>4.22|940251|46|NC_009486|CRT
GTATTGAAACAGGTGTTTGACAACACGAAACAATGGGAAGACATCA
>4.23|940317|47|NC_009486|CRT
TTATTGAAACAGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT
>4.24|940384|47|NC_009486|CRT
CTATTGAAACAAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA
>4.25|940451|46|NC_009486|CRT
CTATTGAAACTTTGCGAACGTACGAGATTTTTTTCACATATCATAA
>4.26|940517|47|NC_009486|CRT
CTATTGAAACAGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT
>4.27|940584|46|NC_009486|CRT
CTATTGAAACAAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT
>4.28|940650|47|NC_009486|CRT
CTATTGAAACTGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG
>4.29|940717|47|NC_009486|CRT
TTATTGAAACAGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC
>4.30|940784|47|NC_009486|CRT
TTATTGAAACAAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT
>4.31|940851|46|NC_009486|CRT
TTATTGAAACTGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG
>4.32|940917|49|NC_009486|CRT
TTATTGAAACCATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA
>4.33|940986|46|NC_009486|CRT
TTATTGAAACAAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT
>4.34|941052|46|NC_009486|CRT
TTATTGAAACACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA
>4.35|941118|46|NC_009486|CRT
TTATTGAAACCCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG
>4.36|941184|48|NC_009486|CRT
TTATTGAAACGTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT
>4.37|940065|35|NC_009486|PILER-CR
AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA
>4.38|940130|35|NC_009486|PILER-CR
AACAACATTTATGAATACAAGATCGTCGTCCAACT
>4.39|940195|37|NC_009486|PILER-CR
TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA
>4.40|940262|36|NC_009486|PILER-CR
AGGTGTTTGACAACACGAAACAATGGGAAGACATCA
>4.41|940328|37|NC_009486|PILER-CR
AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT
>4.42|940395|37|NC_009486|PILER-CR
AAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA
>4.43|940462|36|NC_009486|PILER-CR
TTTGCGAACGTACGAGATTTTTTTCACATATCATAA
>4.44|940528|37|NC_009486|PILER-CR
AGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT
>4.45|940595|36|NC_009486|PILER-CR
AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT
>4.46|940661|37|NC_009486|PILER-CR
TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG
>4.47|940728|37|NC_009486|PILER-CR
AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC
>4.48|940795|37|NC_009486|PILER-CR
AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT
>4.49|940862|36|NC_009486|PILER-CR
TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG
>4.50|940928|39|NC_009486|PILER-CR
CATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA
>4.51|940997|36|NC_009486|PILER-CR
AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT
>4.52|941063|36|NC_009486|PILER-CR
ACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA
>4.53|941129|36|NC_009486|PILER-CR
CCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG
>4.54|941195|38|NC_009486|PILER-CR
GTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT

CRISPR arrays and Neighbor proteins around NC_009486_4

CRISPR arrays

The CRISPR arrays of NC_009486_4

>merge|NC_009486|4|940034-941261|CRISPRCasFinder,CRT,PILER-CR
TTTTTCGTACATCTAAGGAAGTATTGAAACAAACTATTAGATTTTCTTAGCGAAAGAATGTCTTAGTTTCCATACCTCTAAGGAAGTATTGAAACAACAACATTTATGAATACAAGATCGTCGTCCAACTGTTTCCATACCTCTAAGGAATTATTGAAACTGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTAGTTTCCATACCTCTAAGGAAGTATTGAAACAGGTGTTTGACAACACGAAACAATGGGAAGACATCAGTTTCCATACCTCTAAGGAATTATTGAAACAGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCTGTTTCCATACCTCTAAGGAACTATTGAAACAAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGAGTTTCCATACCTCTAAGGAACTATTGAAACTTTGCGAACGTACGAGATTTTTTTCACATATCATAAGTTTCCATACCTCTAAGGAACTATTGAAACAGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATTGTTTCCATACCTCTAAGGAACTATTGAAACAAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGTGTTTCCATACCTCTAAGGAACTATTGAAACTGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTGGTTTCCATACCTCTAAGGAATTATTGAAACAGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCCGTTTCCATACCTCTAAGGAATTATTGAAACAAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTTGTTTCCATACCTCTAAGGAATTATTGAAACTGAGAAGAGAATACGCAATATTAGTATGGCTTGAAGGTTTCCATACCTCTAAGGAATTATTGAAACCATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAAGTTTCCATACCTCTAAGGAATTATTGAAACAAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGATGTTTCCATACCTCTAAGGAATTATTGAAACACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCAGTTTCCATACCTCTAAGGAATTATTGAAACCCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGGGTTTCCATACCTCTAAGGAATTATTGAAACGTGGTCTACTACAGCACATGGATGCAGGAGGATGAAATGTTTCCATACCTCTAAGGAATTATTGAAAC

>NC_009486|4|4|940034-941261|CRISPRCasFinder
TTTTTCGTACATCTAAGGAAGTATTGAAAC	AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AACAACATTTATGAATACAAGATCGTCGTCCAACT
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGGTGTTTGACAACACGAAACAATGGGAAGACATCA
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTTGCGAACGTACGAGATTTTTTTCACATATCATAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC
GTTTCCATACCTCTAAGGAATTATTGAAAC	AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA
GTTTCCATACCTCTAAGGAATTATTGAAAC	AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT
GTTTCCATACCTCTAAGGAATTATTGAAAC	ACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA
GTTTCCATACCTCTAAGGAATTATTGAAAC	CCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT
GTTTCCATACCTCTAAGGAATTATTGAAAC

>NC_009486|4|4|940034-941251|CRT
TTTTTCGTACATCTAAGGAA	GTATTGAAACAAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA
GTTTCCATACCTCTAAGGAA	GTATTGAAACAACAACATTTATGAATACAAGATCGTCGTCCAACT
GTTTCCATACCTCTAAGGAA	TTATTGAAACTGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA
GTTTCCATACCTCTAAGGAA	GTATTGAAACAGGTGTTTGACAACACGAAACAATGGGAAGACATCA
GTTTCCATACCTCTAAGGAA	TTATTGAAACAGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT
GTTTCCATACCTCTAAGGAA	CTATTGAAACAAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA
GTTTCCATACCTCTAAGGAA	CTATTGAAACTTTGCGAACGTACGAGATTTTTTTCACATATCATAA
GTTTCCATACCTCTAAGGAA	CTATTGAAACAGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT
GTTTCCATACCTCTAAGGAA	CTATTGAAACAAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT
GTTTCCATACCTCTAAGGAA	CTATTGAAACTGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG
GTTTCCATACCTCTAAGGAA	TTATTGAAACAGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC
GTTTCCATACCTCTAAGGAA	TTATTGAAACAAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT
GTTTCCATACCTCTAAGGAA	TTATTGAAACTGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG
GTTTCCATACCTCTAAGGAA	TTATTGAAACCATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA
GTTTCCATACCTCTAAGGAA	TTATTGAAACAAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT
GTTTCCATACCTCTAAGGAA	TTATTGAAACACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA
GTTTCCATACCTCTAAGGAA	TTATTGAAACCCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG
GTTTCCATACCTCTAAGGAA	TTATTGAAACGTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT
GTTTCCATACCTCTAAGGAA

>NC_009486|4|4|940035-941261|PILER-CR
TTTTCGTACATCTAAGGAAGTATTGAAACA	AACTATTAGATTTTCTTAGCGAAAGAATGTCTTAG
TTTCCATACCTCTAAGGAAGTATTGAAACA	ACAACATTTATGAATACAAGATCGTCGTCCAACTG
TTTCCATACCTCTAAGGAATTATTGAAACT	GAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTAG
TTTCCATACCTCTAAGGAAGTATTGAAACA	GGTGTTTGACAACACGAAACAATGGGAAGACATCAG
TTTCCATACCTCTAAGGAATTATTGAAACA	GGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCTG
TTTCCATACCTCTAAGGAACTATTGAAACA	AGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGAG
TTTCCATACCTCTAAGGAACTATTGAAACT	TTGCGAACGTACGAGATTTTTTTCACATATCATAAG
TTTCCATACCTCTAAGGAACTATTGAAACA	GGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATTG
TTTCCATACCTCTAAGGAACTATTGAAACA	AATTAGAGGCAAAGAGGTTGTAATGGATGAATGGTG
TTTCCATACCTCTAAGGAACTATTGAAACT	GAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTGG
TTTCCATACCTCTAAGGAATTATTGAAACA	GGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCCG
TTTCCATACCTCTAAGGAATTATTGAAACA	AAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTTG
TTTCCATACCTCTAAGGAATTATTGAAACT	GAGAAGAGAATACGCAATATTAGTATGGCTTGAAGG
TTTCCATACCTCTAAGGAATTATTGAAACC	ATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAAG
TTTCCATACCTCTAAGGAATTATTGAAACA	AACGGACGAACGGTGTCGGCCAAAGTAAGGAGGATG
TTTCCATACCTCTAAGGAATTATTGAAACA	CGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCAG
TTTCCATACCTCTAAGGAATTATTGAAACC	CGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGGG
TTTCCATACCTCTAAGGAATTATTGAAACG	TGGTCTACTACAGCACATGGATGCAGGAGGATGAAATG
TTTCCATACCTCTAAGGAATTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_004082449.1|931795_932284_+|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl|CDD|224817
NC_009486.1|WP_004082453.1|929984_930821_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_009486.1|WP_004082447.1|932685_934509_+|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl|CDD|224806
NC_009486.1|WP_004082425.1|946519_946720_-|cold-shock-protein	unknown	unknown	gnl|CDD|224197
NC_009486.1|WP_004082423.1|948121_948520_-|YjbQ-family-protein	unknown	unknown	gnl|CDD|376651
NC_009486.1|WP_011943487.1|936997_938035_+|dipeptide-epimerase	unknown	unknown	gnl|CDD|239435
NC_009486.1|WP_011943491.1|948535_948811_-|hypothetical-protein	unknown	unknown	gnl|CDD|223920
NC_009486.1|WP_011943483.1|930830_931592_-|FprA-family-A-type-flavoprotein	unknown	unknown	gnl|CDD|223503
NC_009486.1|WP_004082426.1|945027_946422_-|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NC_009486.1|WP_011943489.1|941896_943423_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl|CDD|236566
NC_009486.1|WP_011943488.1|938031_939984_+|IGHMBP2-family-helicase	unknown	unknown	gnl|CDD|273041
NC_009486.1|WP_011943490.1|943497_944247_+|radical-SAM-protein	unknown	unknown	gnl|CDD|224769
NC_009486.1|WP_004082427.1|944230_944995_-|metallophosphoesterase-family-protein	unknown	unknown	gnl|CDD|378975
NC_009486.1|WP_011943485.1|934969_935644_-|cyclase-family-protein	unknown	unknown	gnl|CDD|224790
NC_009486.1|WP_008194265.1|948815_949631_-|septum-site-determining-protein-MinD	unknown	unknown	gnl|CDD|131023
NC_009486.1|WP_004082424.1|946953_948120_+|type-III-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|143482
NC_009486.1|WP_004082420.1|949730_952115_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|379314
NC_009486.1|WP_011943486.1|935677_936994_+|transglutaminase-domain-containing-protein	unknown	unknown	gnl|CDD|376628
NC_009486.1|WP_004082448.1|932286_932667_+|hypothetical-protein	unknown	unknown	gnl|CDD|225945
NC_009486.1|WP_011943484.1|934505_934934_+|DUF2202-domain-containing-protein	unknown	unknown	gnl|CDD|224548

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_004082449.1|931795_932284_+|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl|CDD|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	1.62385e-76
NC_009486.1|WP_004082453.1|929984_930821_-|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.55417e-51
NC_009486.1|WP_004082447.1|932685_934509_+|NADH-quinone-oxidoreductase-subunit-NuoF	gnl|CDD|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_009486.1|WP_004082425.1|946519_946720_-|cold-shock-protein	gnl|CDD|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.68316e-32
NC_009486.1|WP_004082423.1|948121_948520_-|YjbQ-family-protein	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.4098e-72
NC_009486.1|WP_011943487.1|936997_938035_+|dipeptide-epimerase	gnl|CDD|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	1.37154e-126
NC_009486.1|WP_011943491.1|948535_948811_-|hypothetical-protein	gnl|CDD|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	0.000229437
NC_009486.1|WP_011943483.1|930830_931592_-|FprA-family-A-type-flavoprotein	gnl|CDD|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	2.07326e-77
NC_009486.1|WP_004082426.1|945027_946422_-|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_009486.1|WP_011943489.1|941896_943423_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl|CDD|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NC_009486.1|WP_011943488.1|938031_939984_+|IGHMBP2-family-helicase	gnl|CDD|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_009486.1|WP_011943490.1|943497_944247_+|radical-SAM-protein	gnl|CDD|224769	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown].	2.13617e-127
NC_009486.1|WP_004082427.1|944230_944995_-|metallophosphoesterase-family-protein	gnl|CDD|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	3.46972e-27
NC_009486.1|WP_011943485.1|934969_935644_-|cyclase-family-protein	gnl|CDD|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	4.61462e-73
NC_009486.1|WP_008194265.1|948815_949631_-|septum-site-determining-protein-MinD	gnl|CDD|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	2.93811e-149
NC_009486.1|WP_004082424.1|946953_948120_+|type-III-PLP-dependent-enzyme	gnl|CDD|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	2.16025e-174
NC_009486.1|WP_004082420.1|949730_952115_+|AAA-family-ATPase	gnl|CDD|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NC_009486.1|WP_011943486.1|935677_936994_+|transglutaminase-domain-containing-protein	gnl|CDD|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.50425e-23
NC_009486.1|WP_004082448.1|932286_932667_+|hypothetical-protein	gnl|CDD|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	2.20196e-22
NC_009486.1|WP_011943484.1|934505_934934_+|DUF2202-domain-containing-protein	gnl|CDD|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	2.06588e-24

Protein sequences

>NC_009486.1|WP_011943488.1|938031_939984_+|IGHMBP2-family-helicase
MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRTVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGASKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEIISGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF
>NC_009486.1|WP_011943487.1|936997_938035_+|dipeptide-epimerase
MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVKIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ
>NC_009486.1|WP_011943486.1|935677_936994_+|transglutaminase-domain-containing-protein
MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSEGEFQYLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERSEKARRILHERLERLIKGEDPKRYRIRARITLKLKETSSKHRVWLPFPKEGLQIESVKLLRTSHKSYYISPNDVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVVGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYFYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGVPARWQSGWYINPIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEV
>NC_009486.1|WP_011943485.1|934969_935644_-|cyclase-family-protein
MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVPSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVE
>NC_009486.1|WP_011943484.1|934505_934934_+|DUF2202-domain-containing-protein
MIGPRDLLNIALRIESTGYSYYKNLTEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEETPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQAIIDEEKKHLRDLLRLEV
>NC_009486.1|WP_004082447.1|932685_934509_+|NADH-quinone-oxidoreductase-subunit-NuoF
MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAGFPTGLKWELAARQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVDTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKEKRCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVE
>NC_009486.1|WP_004082448.1|932286_932667_+|hypothetical-protein
MAKVKSLEELMKIKEQALKDLQLRGETGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNINDIAVVQSGCMGLCEVEPTVEVRLEGQEPVIYGRVTPENAKRIVKMHILEGRVVEDLVVKRGEA
>NC_009486.1|WP_004082449.1|931795_932284_+|NAD(P)H-dependent-oxidoreductase-subunit-E
MVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREG
>NC_009486.1|WP_011943483.1|930830_931592_-|FprA-family-A-type-flavoprotein
MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNTACKKWVDMVSKRKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSL
>NC_009486.1|WP_004082453.1|929984_930821_-|methyl-accepting-chemotaxis-protein
MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKI
>NC_009486.1|WP_011943489.1|941896_943423_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MRKFLVILLALLITALLLGARLTILHVNDTHGHAWAFDEYRNPGIGGLAAIATIVEEVKREVESQGGYVIFLHAGDLNTGVPESDLQDAIPDIVGFNMIGLKAMAVGNHEFDNPREVLEKQMKFADFPFLSANIVKEDGEPFFNPYIVEDLGELKIAIIGFTTEETEILEPLYLEGLKFENALKVAQKIAPELKKQADVVIALAHLDWGEPKKEDITTTHQLAGVEGIDVVIAGHSHVLGSDVVDGKIIASAGEYGKYVGRLDLDIEDGKIVAWHWEAIPVNLKVYENEKYRYLGKPYLENRYVAKALEYFKKVGNEKLDTVIGETKIYLDGEREHVRSKSTNLANLIVDAMRWKVGADIAFTNGGGIRASIKPGKITVRDILTVLPFGNTLYVLELTGEQIMKVLEYAATIPEGKGAFLQVSGLTWKSKDGKVVEVLVNGEPLDPEKKYKVVTNNYMAGGGDGYVMFKEWDGYDTGYLMSDAVIEYIQNVLNGKIEEYDDSQRYVRE
>NC_009486.1|WP_011943490.1|943497_944247_+|radical-SAM-protein
MTVDPSHTIPVSVTGTFCSLNCPHCGAHYLKHMISVDEIPAFVKKGYRNFLISGGMLPDGSIPFEKYYERLKELKESHGLLYNFHVGFQKSKVAKELADVVSMDFFGDETVLKSIYGLALTPQEILDIAHFYENVVFHITVGITGGKITHEEKALEILSQETDTVVLNVFIPTPGTKFGKSFPPDLQEVVKLFEKARKLFKRVILGCMQPRGEYRKKLQSELKDLVDVITKPVGGTGEFKGCCAFIGRG
>NC_009486.1|WP_004082427.1|944230_944995_-|metallophosphoesterase-family-protein
MRLAFFGDVHGNFEALKAVLEDMENKGVDEVFCLGDLVGYGPDPEAVVQTIMEKNIKTIMGNYDDAVGYSKESCGCSYAPGRETEVGDISLKWSIENTSEKTREFLRNLPKKLSFEVEGVRFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEENVVVNGHTHLPMVKWVMGKLVLNPGSAGRPKDGDPRASYMIVDVENGTVSFEIVRVRYDVKTTVEKIARNGLPVELATVLALGQTFDMGPGKVTFTLGR
>NC_009486.1|WP_004082426.1|945027_946422_-|glutamate--tRNA-ligase
MVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKKT
>NC_009486.1|WP_004082425.1|946519_946720_-|cold-shock-protein
MRGTVKWFDSKKGYGFITMENGEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKGPQAVNVRPVR
>NC_009486.1|WP_004082424.1|946953_948120_+|type-III-PLP-dependent-enzyme
MMEYWIRRALEVVKTPFLLFDLSVVEKKYLEMKAALKKADIYYAVKANSHPRIISLLARLGSNFDVASKGEIEKLLALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAINAPGSFVFVRVETDGADADWPLSRKFGTNPEHALQLLSYASKMKLIPAGLSFHVGSQNLNPESWKKAIEIAGRVFKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGKAIEEAIDENLWFVHNLKVIAEPGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFEYEIRVLGKEREELEEYHLAGPTCDSVDVIYDRIFLPKSITLNDLVCFINAGAYTVEYNTRFNGIEPPKMVFIEELTEISIEEKIKTRVLD
>NC_009486.1|WP_004082423.1|948121_948520_-|YjbQ-family-protein
MLKRLTVRTSSRTQFVDITSEIVKFIEESKVRNGICVVFVPHTTAGITINENADPSVRQDIMNTLNKLVPPSAGYTHLEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFDGPRTRSVYVKIVEG
>NC_009486.1|WP_011943491.1|948535_948811_-|hypothetical-protein
MKFLFWEFGKKKKSRETAKKRLEQIVGTTKRRQMNITEIIPKEMLDKNSDKIKERIASWLSETFNVEKEKIKIDLEEREGHVVIITNVFFK
>NC_009486.1|WP_008194265.1|948815_949631_-|septum-site-determining-protein-MinD
MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTMIDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKELIPHFDYIIIDSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRISKNFENLARRIRGEGVPLENDFVTVSKGFLDTLKDFFSKLKRG
>NC_009486.1|WP_004082420.1|949730_952115_+|AAA-family-ATPase
MIRKLRPDEINSFDLDFLNFQTTEEVPPNEGFIGQKRAKEAIETGIRIREKGYNIFVTGMTGTGRRTFVQMMLQDVAKKLPVPNDWGYVYNFENPYEPKAISFKAGQGRRFKKRLEDLINEVVEALNKSFESEEFARKISEMEEKYALMRKQLWESLEAKASELGFVVQLTPAGVVMLPVVDGKPLPPEAVNALPDQAIREIEERQMKLKHLVDGTLYRIRKLDIEFRKSLEEFHKRTALFAIDPLFVEVESEFENEGVKEFLESVKKDIVENLLDFLRMDARERKEIYMRKYSLNLIVDNSDLTGAPVIYETNPTYSNLFGKIEYYVRGGFLHTDFSMIRPGSVHKANGGFLIVEAERLLSQPYAWYNLKRVLMESQISVENLEHTLGVSSTITLKPEKIPLDLKVVIIGTPYLYELLYELDPDFRKLFRIKAEFDWEIPRNELNVQKYVSFISSVCREKNLPHFDRGAVKRVIWYAMRNAGNSTKLSAVFGDIVNLIVESGELARLEGSEVTTSDHVLKAYQAMENRRNLLEEKYDEMIKTFDLMIEVTGSKVGQINGLTVLDLGDHSFGVPVKITAKVYLGRPGVVDIQREADLSGKIHSKAVLILEGFLGSRYAQDFPLSVSASISFEQVYSEVEGDSASLAEALALLSAISKVPIKQGIAVTGSINQHGEVQPVGGIVEKVEGFYRACKTRGFDGEQGVIIPKANAKNLVLKDEIIQAMKKGLFHIWTVETIDDAIEIVMGMKAGRVTKTGKFERNSVNYLVYRELKKMKKLLDGVPEERKKKKRKGKK

Crispr_ID: NC_009486_5

• CRISPR_ID: NC_009486_5
• CRISPR_location: 1107494-1110144
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 40 spacers
• Cas_protein_info: csa3,cas2,cas1,cas4,cas3,cas5,cas7,cas6

Consensus repeat of NC_009486_5

Consensus_repeat	Method
GTTCATATTCCTCTTAGGAAGATAAAAAC	CRT
GTTCATATTCCTCTTAGGAAGATAAAAAC	CRISPRCasFinder
GTTCATATTCCTCTTAGGAAGATAAAAAC	PILER-CR

spacers of NC_009486_5

>5.1|1107523|37|NC_009486|CRT
TAGCAGTGGTTCACCTTTCCATCTTTCACATCACGCC
>5.2|1107589|37|NC_009486|CRT,CRISPRCasFinder
GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA
>5.3|1107655|37|NC_009486|CRT,CRISPRCasFinder
TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG
>5.4|1107721|37|NC_009486|CRT,CRISPRCasFinder
ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT
>5.5|1107787|35|NC_009486|CRT,CRISPRCasFinder
TTGGGGGCGACATCAACGATGCATCAGCGGTGATT
>5.6|1107851|37|NC_009486|CRT,CRISPRCasFinder
TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT
>5.7|1107917|36|NC_009486|CRT,CRISPRCasFinder
ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT
>5.8|1107982|36|NC_009486|CRT,CRISPRCasFinder
AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG
>5.9|1108047|38|NC_009486|CRT,CRISPRCasFinder
CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC
>5.10|1108114|35|NC_009486|CRT,CRISPRCasFinder
CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA
>5.11|1108178|38|NC_009486|CRT,CRISPRCasFinder
CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT
>5.12|1108245|35|NC_009486|CRT,CRISPRCasFinder
CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC
>5.13|1108309|37|NC_009486|CRT,CRISPRCasFinder
TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA
>5.14|1108375|36|NC_009486|CRT,CRISPRCasFinder
GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA
>5.15|1108440|36|NC_009486|CRT,CRISPRCasFinder
CACAAAAATCATTATGAACAGTTTGTATGGCAAATT
>5.16|1108505|37|NC_009486|CRT,CRISPRCasFinder
ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA
>5.17|1108571|37|NC_009486|CRT,CRISPRCasFinder
GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC
>5.18|1108637|37|NC_009486|CRT,CRISPRCasFinder
CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC
>5.19|1108703|36|NC_009486|CRT,CRISPRCasFinder
CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
>5.20|1108768|37|NC_009486|CRT,CRISPRCasFinder
TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
>5.21|1108834|37|NC_009486|CRT,CRISPRCasFinder
CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA
>5.22|1108900|37|NC_009486|CRT,CRISPRCasFinder
ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA
>5.23|1108966|36|NC_009486|CRT,CRISPRCasFinder
ACGAAATACAACATCACACAAACTTTAGGCACTTTT
>5.24|1109031|37|NC_009486|CRT,CRISPRCasFinder
AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA
>5.25|1109097|38|NC_009486|CRT,CRISPRCasFinder
GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA
>5.26|1109164|37|NC_009486|CRT,CRISPRCasFinder
GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC
>5.27|1109230|36|NC_009486|CRT,CRISPRCasFinder
CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
>5.28|1109295|37|NC_009486|CRT,CRISPRCasFinder
TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
>5.29|1109361|36|NC_009486|CRT,CRISPRCasFinder
TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC
>5.30|1109426|35|NC_009486|CRT,CRISPRCasFinder
TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT
>5.31|1109490|35|NC_009486|CRT,CRISPRCasFinder
GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA
>5.32|1109554|36|NC_009486|CRT,CRISPRCasFinder
AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG
>5.33|1109619|37|NC_009486|CRT,CRISPRCasFinder
TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA
>5.34|1109685|37|NC_009486|CRT,CRISPRCasFinder
TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC
>5.35|1109751|36|NC_009486|CRT,CRISPRCasFinder
ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC
>5.36|1109816|36|NC_009486|CRT,CRISPRCasFinder
GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG
>5.37|1109881|35|NC_009486|CRT,CRISPRCasFinder
GCGACGCTGTACAAATACCCCTATTTAATTGACGC
>5.38|1109945|38|NC_009486|CRT,CRISPRCasFinder
ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC
>5.39|1110012|37|NC_009486|CRT,CRISPRCasFinder
TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT
>5.40|1110078|38|NC_009486|CRT,CRISPRCasFinder
GATAACAAAATTTCGAAACGTTATGACATACAAGGATA
>5.41|1107590|37|NC_009486|PILER-CR
GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA
>5.42|1107656|37|NC_009486|PILER-CR
TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG
>5.43|1107722|37|NC_009486|PILER-CR
ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT
>5.44|1107788|35|NC_009486|PILER-CR
TTGGGGGCGACATCAACGATGCATCAGCGGTGATT
>5.45|1107852|37|NC_009486|PILER-CR
TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT
>5.46|1107918|36|NC_009486|PILER-CR
ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT
>5.47|1107983|36|NC_009486|PILER-CR
AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG
>5.48|1108048|38|NC_009486|PILER-CR
CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC
>5.49|1108115|35|NC_009486|PILER-CR
CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA
>5.50|1108179|38|NC_009486|PILER-CR
CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT
>5.51|1108246|35|NC_009486|PILER-CR
CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC
>5.52|1108310|37|NC_009486|PILER-CR
TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA
>5.53|1108376|36|NC_009486|PILER-CR
GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA
>5.54|1108441|36|NC_009486|PILER-CR
CACAAAAATCATTATGAACAGTTTGTATGGCAAATT
>5.55|1108506|37|NC_009486|PILER-CR
ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA
>5.56|1108572|37|NC_009486|PILER-CR
GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC
>5.57|1108638|37|NC_009486|PILER-CR
CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC
>5.58|1108704|36|NC_009486|PILER-CR
CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
>5.59|1108769|37|NC_009486|PILER-CR
TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
>5.60|1108835|37|NC_009486|PILER-CR
CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA
>5.61|1108901|37|NC_009486|PILER-CR
ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA
>5.62|1108967|36|NC_009486|PILER-CR
ACGAAATACAACATCACACAAACTTTAGGCACTTTT
>5.63|1109032|37|NC_009486|PILER-CR
AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA
>5.64|1109098|38|NC_009486|PILER-CR
GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA
>5.65|1109165|37|NC_009486|PILER-CR
GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC
>5.66|1109231|36|NC_009486|PILER-CR
CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
>5.67|1109296|37|NC_009486|PILER-CR
TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
>5.68|1109362|36|NC_009486|PILER-CR
TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC
>5.69|1109427|35|NC_009486|PILER-CR
TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT
>5.70|1109491|35|NC_009486|PILER-CR
GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA
>5.71|1109555|36|NC_009486|PILER-CR
AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG
>5.72|1109620|37|NC_009486|PILER-CR
TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA
>5.73|1109686|37|NC_009486|PILER-CR
TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC
>5.74|1109752|36|NC_009486|PILER-CR
ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC
>5.75|1109817|36|NC_009486|PILER-CR
GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG
>5.76|1109882|35|NC_009486|PILER-CR
GCGACGCTGTACAAATACCCCTATTTAATTGACGC
>5.77|1109946|38|NC_009486|PILER-CR
ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC
>5.78|1110013|37|NC_009486|PILER-CR
TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT
>5.79|1110079|38|NC_009486|PILER-CR
GATAACAAAATTTCGAAACGTTATGACATACAAGGATA

CRISPR arrays and Neighbor proteins around NC_009486_5

CRISPR arrays

The CRISPR arrays of NC_009486_5

>merge|NC_009486|5|1107494-1110144|CRT,CRISPRCasFinder,PILER-CR
TTATAATTTCTCATTAGGAGGATAAAAAATAGCAGTGGTTCACCTTTCCATCTTTCACATCACGCCATTCATATTCCTCTTAGGAAGATAAAAACGGACAGGAACTTTGAGATTTTATTTAGCCACGAACAAGTTCATATTCCTCTTAGGAAGATAAAAACTCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGGGTTCATATTCCTCTTAGGAAGATAAAAACATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCTGTTCATATTCCTCTTAGGAAGATAAAAACTTGGGGGCGACATCAACGATGCATCAGCGGTGATTGTTCATATTCCTCTTAGGAAGATAAAAACTTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCATGTTCATATTCCTCTTAGGAAGATAAAAACATTATTCCCACCTCCGTGCCTCTATAGATTGTACCTGTTCATATTCCTCTTAGGAAGATAAAAACAAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAGGTTCATATTCCTCTTAGGAAGATAAAAACCAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATACGTTCATATTCCTCTTAGGAAGATAAAAACCAGGGATTTGAAGATCTTCAGCACTACCTTCGGAAGTTCATATTCCTCTTAGGAAGATAAAAACCCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTTGTTCATATTCCTCTTAGGAAGATAAAAACCAGTACCTGTACGTGGCAAATCGGGAAAATTCTACGTTCATATTCCTCTTAGGAAGATAAAAACTGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGAGTTCATATTCCTCTTAGGAAGATAAAAACGAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAAGTTCATATTCCTCTTAGGAAGATAAAAACCACAAAAATCATTATGAACAGTTTGTATGGCAAATTGTTCATATTCCTCTTAGGAAGATAAAAACACGACACAAACACCGGAAAACTTGTTGTATTTTCAGAGTTCATATTCCTCTTAGGAAGATAAAAACGTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATCGTTCATATTCCTCTTAGGAAGATAAAAACCCCACATCGCTATCCCTCCTCATAACCATCGCACTTCGTTCATATTCCTCTTAGGAAGATAAAAACCGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGAGTTCATATTCCTCTTAGGAAGATAAAAACTGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATCGTTCATATTCCTCTTAGGAAGATAAAAACCTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATAGTTCATATTCCTCTTAGGAAGATAAAAACATATCTATACCACAGCATTTCTGCAACTTCAGGGACAGTTCATATTCCTCTTAGGAAGATAAAAACACGAAATACAACATCACACAAACTTTAGGCACTTTTGTTCATATTCCTCTTAGGAAGATAAAAACAACTACTACTCTTTTGTCACCAATAAAAATACTAAAAGTTCATATTCCTCTTAGGAAGATAAAAACGTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATAGTTCATATTCCTCTTAGGAAGATAAAAACGAGATGAAGCACTAAAAGGGCTATATTCCTATAATGCGTTCATATTCCTCTTAGGAAGATAAAAACCGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGAGTTCATATTCCTCTTAGGAAGATAAAAACTGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATCGTTCATATTCCTCTTAGGAAGATAAAAACTGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACCGTTCATATTCCTCTTAGGAAGATAAAAACTTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACATGTTCATATTCCTCTTAGGAAGATAAAAACGAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAAGTTCATATTCCTCTTAGGAAGATAAAAACAACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTGGTTCATATTCCTCTTAGGAAGATAAAAACTTTTTGATCTCACTGAAGAAGATTTTATACTCAATAAGTTCATATTCCTCTTAGGAAGATAAAAACTTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGCGTTCATATTCCTCTTAGGAAGATAAAAACACCTCACACTCGCATACAAAGTCGCAGTAGGATATCGTTCATATTCCTCTTAGGAAGATAAAAACGGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGGGTTCATATTCCTCTTAGGAAGATAAAAACGCGACGCTGTACAAATACCCCTATTTAATTGACGCGTTCATATTCCTCTTAGGAAGATAAAAACACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTCGTTCATATTCCTCTTAGGAAGATAAAAACTACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTTGTTCATATTCCTCTTAGGAAGATAAAAACGATAACAAAATTTCGAAACGTTATGACATACAAGGATAGTTCATATTCCTCTTAGGAAGATAAAAAC

>NC_009486|5|5|1107494-1110144|CRT
TTATAATTTCTCATTAGGAGGATAAAAAA	TAGCAGTGGTTCACCTTTCCATCTTTCACATCACGCC
ATTCATATTCCTCTTAGGAAGATAAAAAC	GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGGGGGCGACATCAACGATGCATCAGCGGTGATT
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT
GTTCATATTCCTCTTAGGAAGATAAAAAC	AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	CACAAAAATCATTATGAACAGTTTGTATGGCAAATT
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACGAAATACAACATCACACAAACTTTAGGCACTTTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG
GTTCATATTCCTCTTAGGAAGATAAAAAC	GCGACGCTGTACAAATACCCCTATTTAATTGACGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	GATAACAAAATTTCGAAACGTTATGACATACAAGGATA
GTTCATATTCCTCTTAGGAAGATAAAAAC

>NC_009486|5|5|1107560-1110144|CRISPRCasFinder
ATTCATATTCCTCTTAGGAAGATAAAAAC	GGACAGGAACTTTGAGATTTTATTTAGCCACGAACAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TCGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGG
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCT
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGGGGGCGACATCAACGATGCATCAGCGGTGATT
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCAT
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATTATTCCCACCTCCGTGCCTCTATAGATTGTACCT
GTTCATATTCCTCTTAGGAAGATAAAAAC	AAGGTCGTGTCTCTACTATGCTGTATGCTAGATCAG
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGTACATAGCGGGCTTAAGTAACAGGGATTCTTATAC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGGGATTTGAAGATCTTCAGCACTACCTTCGGAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	CCTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	CAGTACCTGTACGTGGCAAATCGGGAAAATTCTAC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAGGAAGTATCAAGGAAGAAATCTTCATAGATGCAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	CACAAAAATCATTATGAACAGTTTGTATGGCAAATT
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACGACACAAACACCGGAAAACTTGTTGTATTTTCAGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GTGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CCCACATCGCTATCCCTCCTCATAACCATCGCACTTC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CTGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATA
GTTCATATTCCTCTTAGGAAGATAAAAAC	ATATCTATACCACAGCATTTCTGCAACTTCAGGGACA
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACGAAATACAACATCACACAAACTTTAGGCACTTTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	AACTACTACTCTTTTGTCACCAATAAAAATACTAAAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GTTATAGACTGGAAACAACTGAGGGGAGGTAGATGATA
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAGATGAAGCACTAAAAGGGCTATATTCCTATAATGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	CGTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TGATTCGCGGGAACGGCGATCTTTTGCTCTTCGACC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTGTCCTAACTCTTTCCCGCTCTCAAGTTCAACAT
GTTCATATTCCTCTTAGGAAGATAAAAAC	GAAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	AACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTG
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTTTTGATCTCACTGAAGAAGATTTTATACTCAATAA
GTTCATATTCCTCTTAGGAAGATAAAAAC	TTTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACCTCACACTCGCATACAAAGTCGCAGTAGGATATC
GTTCATATTCCTCTTAGGAAGATAAAAAC	GGTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGG
GTTCATATTCCTCTTAGGAAGATAAAAAC	GCGACGCTGTACAAATACCCCTATTTAATTGACGC
GTTCATATTCCTCTTAGGAAGATAAAAAC	ACTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTC
GTTCATATTCCTCTTAGGAAGATAAAAAC	TACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTT
GTTCATATTCCTCTTAGGAAGATAAAAAC	GATAACAAAATTTCGAAACGTTATGACATACAAGGATA
GTTCATATTCCTCTTAGGAAGATAAAAAC

>NC_009486|5|5|1107561-1110144|PILER-CR
TTCATATTCCTCTTAGGAAGATAAAAACG	GACAGGAACTTTGAGATTTTATTTAGCCACGAACAAG
TTCATATTCCTCTTAGGAAGATAAAAACT	CGTAGAGTTTGCCGTTGGAGGGCACGGCGTCTATGGG
TTCATATTCCTCTTAGGAAGATAAAAACA	TTTCAAACCTCAAAATTGCGTGCCGAACGTTCTCCTG
TTCATATTCCTCTTAGGAAGATAAAAACT	TGGGGGCGACATCAACGATGCATCAGCGGTGATTG
TTCATATTCCTCTTAGGAAGATAAAAACT	TGAAACGTCCAAAATAAAGGCTGTACTGTTTCCCATG
TTCATATTCCTCTTAGGAAGATAAAAACA	TTATTCCCACCTCCGTGCCTCTATAGATTGTACCTG
TTCATATTCCTCTTAGGAAGATAAAAACA	AGGTCGTGTCTCTACTATGCTGTATGCTAGATCAGG
TTCATATTCCTCTTAGGAAGATAAAAACC	AGTACATAGCGGGCTTAAGTAACAGGGATTCTTATACG
TTCATATTCCTCTTAGGAAGATAAAAACC	AGGGATTTGAAGATCTTCAGCACTACCTTCGGAAG
TTCATATTCCTCTTAGGAAGATAAAAACC	CTGGGCTCCAGAAATAAGTATTAGCTGTAACTATTTTG
TTCATATTCCTCTTAGGAAGATAAAAACC	AGTACCTGTACGTGGCAAATCGGGAAAATTCTACG
TTCATATTCCTCTTAGGAAGATAAAAACT	GTCTTGAGAGGTGTACTTGAGAAGGAGGCGAAATGAG
TTCATATTCCTCTTAGGAAGATAAAAACG	AGGAAGTATCAAGGAAGAAATCTTCATAGATGCAAG
TTCATATTCCTCTTAGGAAGATAAAAACC	ACAAAAATCATTATGAACAGTTTGTATGGCAAATTG
TTCATATTCCTCTTAGGAAGATAAAAACA	CGACACAAACACCGGAAAACTTGTTGTATTTTCAGAG
TTCATATTCCTCTTAGGAAGATAAAAACG	TGACCGTTTTTGTATGTTGTGTCGGGAAAAACCATCG
TTCATATTCCTCTTAGGAAGATAAAAACC	CCACATCGCTATCCCTCCTCATAACCATCGCACTTCG
TTCATATTCCTCTTAGGAAGATAAAAACC	GTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGAG
TTCATATTCCTCTTAGGAAGATAAAAACT	GAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATCG
TTCATATTCCTCTTAGGAAGATAAAAACC	TGACCCTTTTTCCTCATCCCTGAGTGTCCATCTATAG
TTCATATTCCTCTTAGGAAGATAAAAACA	TATCTATACCACAGCATTTCTGCAACTTCAGGGACAG
TTCATATTCCTCTTAGGAAGATAAAAACA	CGAAATACAACATCACACAAACTTTAGGCACTTTTG
TTCATATTCCTCTTAGGAAGATAAAAACA	ACTACTACTCTTTTGTCACCAATAAAAATACTAAAAG
TTCATATTCCTCTTAGGAAGATAAAAACG	TTATAGACTGGAAACAACTGAGGGGAGGTAGATGATAG
TTCATATTCCTCTTAGGAAGATAAAAACG	AGATGAAGCACTAAAAGGGCTATATTCCTATAATGCG
TTCATATTCCTCTTAGGAAGATAAAAACC	GTTCGTCAGCACAATTCTCGGAAGGCCTGTGGCGAG
TTCATATTCCTCTTAGGAAGATAAAAACT	GAAAGGTCTTGAACAGCTTCTTCAGGCGGTGGCATCG
TTCATATTCCTCTTAGGAAGATAAAAACT	GATTCGCGGGAACGGCGATCTTTTGCTCTTCGACCG
TTCATATTCCTCTTAGGAAGATAAAAACT	TGTCCTAACTCTTTCCCGCTCTCAAGTTCAACATG
TTCATATTCCTCTTAGGAAGATAAAAACG	AAGAACGAGAAGGGCAAGAAAAAGAAGAAAGTAAG
TTCATATTCCTCTTAGGAAGATAAAAACA	ACTTGAAAAGGACTTCATCGTTGAGGGAGAGCCTGG
TTCATATTCCTCTTAGGAAGATAAAAACT	TTTTGATCTCACTGAAGAAGATTTTATACTCAATAAG
TTCATATTCCTCTTAGGAAGATAAAAACT	TTGTTGTCCCTATCTCCACCGCAAAGGACGTGACGCG
TTCATATTCCTCTTAGGAAGATAAAAACA	CCTCACACTCGCATACAAAGTCGCAGTAGGATATCG
TTCATATTCCTCTTAGGAAGATAAAAACG	GTATTGGAAAGGGTTGGTTAATAGGTGTGGGACGGG
TTCATATTCCTCTTAGGAAGATAAAAACG	CGACGCTGTACAAATACCCCTATTTAATTGACGCG
TTCATATTCCTCTTAGGAAGATAAAAACA	CTACTCTTCTTTCGTGATATTCCTCTCGTATATTGTCG
TTCATATTCCTCTTAGGAAGATAAAAACT	ACTTTGACTCTGCGTACATTAGTGCGGTGATTAGTTG
TTCATATTCCTCTTAGGAAGATAAAAACG	ATAACAAAATTTCGAAACGTTATGACATACAAGGATAG
TTCATATTCCTCTTAGGAAGATAAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_011943632.1|1119622_1120093_+|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943618.1|1101596_1101779_-|hypothetical-protein	unknown	unknown	gnl|CDD|238698
NC_009486.1|WP_011943622.1|1104537_1105389_-|GGDEF-domain-containing-protein	unknown	unknown	gnl|CDD|143635
NC_009486.1|WP_048810870.1|1103233_1103560_+|SPW-repeat-protein	unknown	unknown	unknown
NC_009486.1|WP_011943616.1|1099568_1100417_+|acetylglutamate-kinase	unknown	unknown	gnl|CDD|234869
NC_009486.1|WP_148186878.1|1116091_1117414_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	unknown	unknown	gnl|CDD|187796
NC_009486.1|WP_167310317.1|1102976_1103219_+|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|197713
NC_009486.1|WP_011943614.1|1097342_1098362_+|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl|CDD|234761
NC_009486.1|WP_011943617.1|1100419_1101577_+|aspartate-aminotransferase-family-protein	unknown	unknown	gnl|CDD|235056
NC_009486.1|WP_011943613.1|1096149_1097346_+|argininosuccinate-lyase	unknown	unknown	gnl|CDD|223243
NC_009486.1|WP_011943615.1|1098378_1099572_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl|CDD|376687
NC_009486.1|WP_011943630.1|1117623_1118349_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl|CDD|273848
NC_009486.1|WP_011943625.1|1111506_1112025_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_009486.1|WP_011943626.1|1112027_1114319_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|273707
NC_009486.1|WP_011943624.1|1110513_1111497_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_009486.1|WP_011943628.1|1115100_1116099_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	gnl|CDD|376656
NC_009486.1|WP_011943621.1|1103914_1104460_-|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl|CDD|223799
NC_009486.1|WP_011943623.1|1110222_1110504_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_009486.1|WP_011943631.1|1119281_1119632_+|J-domain-containing-protein	unknown	unknown	gnl|CDD|197617
NC_009486.1|WP_011943627.1|1114321_1115104_-|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl|CDD|273860

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009486.1|WP_011943630.1|1117623_1118349_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	2.4e-27	91.3	4.0
NC_009486.1|WP_011943625.1|1111506_1112025_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.9e-51	169.2	2.0
NC_009486.1|WP_011943626.1|1112027_1114319_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	9e-77	253.6	4.3
NC_009486.1|WP_167310317.1|1102976_1103219_+|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	2.9e-17	57.9	0.3
NC_009486.1|WP_011943624.1|1110513_1111497_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	8.6e-138	453.6	8.2
NC_009486.1|WP_011943623.1|1110222_1110504_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.7e-27	87.8	0.4
NC_009486.1|WP_011943628.1|1115100_1116099_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	1.5e-76	251.6	0.2
NC_009486.1|WP_011943627.1|1114321_1115104_-|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	5e-51	168.1	0.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_011943618.1|1101596_1101779_-|hypothetical-protein	gnl|CDD|238698	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.	0.000679217
NC_009486.1|WP_011943622.1|1104537_1105389_-|GGDEF-domain-containing-protein	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	9.62299e-65
NC_009486.1|WP_011943628.1|1115100_1116099_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	3.40261e-68
NC_009486.1|WP_011943616.1|1099568_1100417_+|acetylglutamate-kinase	gnl|CDD|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	6.68277e-160
NC_009486.1|WP_148186878.1|1116091_1117414_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl|CDD|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	0.000202591
NC_009486.1|WP_167310317.1|1102976_1103219_+|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl|CDD|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	1.01842e-16
NC_009486.1|WP_011943624.1|1110513_1111497_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.65714e-174
NC_009486.1|WP_011943617.1|1100419_1101577_+|aspartate-aminotransferase-family-protein	gnl|CDD|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_009486.1|WP_011943613.1|1096149_1097346_+|argininosuccinate-lyase	gnl|CDD|223243	COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism].	3.39972e-170
NC_009486.1|WP_011943615.1|1098378_1099572_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl|CDD|376687	pfam01960, ArgJ, ArgJ family. Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.	0
NC_009486.1|WP_011943630.1|1117623_1118349_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.42883e-24
NC_009486.1|WP_011943625.1|1111506_1112025_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.26128e-54
NC_009486.1|WP_011943626.1|1112027_1114319_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.11772e-65
NC_009486.1|WP_011943614.1|1097342_1098362_+|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl|CDD|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_009486.1|WP_011943621.1|1103914_1104460_-|YkgJ-family-cysteine-cluster-protein	gnl|CDD|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	0.000247488
NC_009486.1|WP_011943623.1|1110222_1110504_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.08406e-29
NC_009486.1|WP_011943631.1|1119281_1119632_+|J-domain-containing-protein	gnl|CDD|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	1.15135e-23
NC_009486.1|WP_011943627.1|1114321_1115104_-|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.09615e-61

Protein sequences

>NC_009486.1|WP_011943622.1|1104537_1105389_-|GGDEF-domain-containing-protein
MNNGHFEFLKKVFYSLQPVIGFVLLESDSENGKLSVRVSEGKVPPFFKEGFFFTSEELTHLINVCSSTSAIISVLKDSKYRRSLILYLKRPLSKDALLLIQTLLTTFEREDLSFGIKELEYMAYHDPLTGLPNRRYLFELGNKYLDLAKREGKKAFVLFLDLAGFKAINDTYGHLTGDEVLKTVSRRILDRVRRSDVVARYGGDEFTILLYDMKEEYLKFFLERILSTFREPIRVGNTTLTVASNIGVARFPEDGENLEELLKVADMRMYRAKEMRTPYLLRS
>NC_009486.1|WP_011943621.1|1103914_1104460_-|YkgJ-family-cysteine-cluster-protein
MERLIELSLQVIKLYEELDGVQKDLPTCGGCRECCNTPSVNIEVTVLEFVPLAIHLLQNDSIEKWLEILENVDEMDRCVLFDPHSERGGCLYHSFRPMVCRLFSGSYVLRKEKPEVWGCKYLKPALSSFIETLPNCSEMYSKLLAIDFFLAQERYPINIALKKALEYVYYRIFPAFKRRSA
>NC_009486.1|WP_048810870.1|1103233_1103560_+|SPW-repeat-protein
MSWRGWIVLIFSLWLIVASLIPGIVGSKGANIADFLIVGVVLLIAGIFMLGTSKVAGWIELLLGIWLIIAAFIPGITGSKGAALANGLVVGIIALIFAFFDRKKQEGK
>NC_009486.1|WP_167310317.1|1102976_1103219_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MNPTRLRILLLLSKKDMCVGKIAEILRMDQSAVSAQLKVLRHLNLVKAKRHGRYMRYKLNNKHVRNILREGFKYVLKTSQ
>NC_009486.1|WP_011943618.1|1101596_1101779_-|hypothetical-protein
MPYIYRCKKCGAIYYSATSIEYQLNKYCEKCGGELEQLGEEGEVMEMEKEEEESKKKKKK
>NC_009486.1|WP_011943617.1|1100419_1101577_+|aspartate-aminotransferase-family-protein
MYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNIEDLRKKMSEDVCAVFLEPIQGESGIVPATKEFLEGARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERADVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMEKLQEMKEEFDLVADVRGMGLMIGIQFKEEVNNREIATKCFENKLLVVPAGNNTVRFLPPLTVEYGEIDLAVETLKKVLREI
>NC_009486.1|WP_011943616.1|1099568_1100417_+|acetylglutamate-kinase
MRIDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKGDKLISTLTPDEAEDLIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELEG
>NC_009486.1|WP_011943615.1|1098378_1099572_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MFTPSGFKFAGVHCKIKRKRKDLGIIFSEVPCVAAGVFTTNVVKAAPVIYDMEILKKNSNGIRAVVVNSGVANACTGEQGMINARRMAEKTAEELGVPVESVLVSSTGVIGVQLPMDKVENGIEEAVKVLSNDPLPFAEAIMTTDTKVKMHSTKVTIDGKEITVLGIAKGSGMIHPNMATMLSFITTDAKISEEALKKLLKLSVDDSYNMIDVDGDTSTNDMVIVLANGLAGNTTIQPETDGFWKLYEAVHEVNQVLAEKIVEDGEGATKVMEVHVVNAPDIKSARLIARSIVSSNLVKTAIYGEDANWGRIIAAAGYSGATFDPDKLDLFFESEAGRIKVAENGQGVPFDEEEAKKILSEKKIRIILDMKQGKETAKAWGCDLTEKYVEINGRYRT
>NC_009486.1|WP_011943614.1|1097342_1098362_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MIRVGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEVFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKRNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELEKISGKKVNVVFTPHLVPMTRGILSTIYVKTDKSLEEIHEAYLEFYRNEPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFGLDETKGLEFTPIYP
>NC_009486.1|WP_011943613.1|1096149_1097346_+|argininosuccinate-lyase
MSEKLWEKGYKVNEEVEKFTVGDDYVTDMKIIEYDIKASIVHSRMLHKIGLLSAEEQKKIEEALSELLNLVKEGKFQIKPEEEDCHTAIENFLVKKLGEIGKKIHTARSRNDQVLTALRLMYKEELKEIENLIRELQKSLERFIEKFGDVKFPGYTHTRKAMPTDFATWAGALKDALEDDLKLLKTTYEIVDQSPLGTGAGYGVPIDIDREFTAKELGFSRVQWNPIYTQNSRGKFEYLILHTLSQISYDLNRFASDIIFFSLPEIGYLKLPKELCTGSSIMPHKINPDPLELVRAYHHAIVSKMLMAVTLPSNLIFGYHRDFQLLKKPVIEAFEVVKNIVRIMKIIFDHLEVDKERSESSITEEVLATHRVYELVKQGVPFRDAYRMVAEKYGREKD
>NC_009486.1|WP_011943623.1|1110222_1110504_-|CRISPR-associated-endonuclease-Cas2
MRVILVYDISTETKEGVKRLNRVRKIARRYLDHVQKSVFEGELTEGEIEKLKFELQCIIDNDEDFVIIYKMPPSIMIERDILTNTNDPTSNFI
>NC_009486.1|WP_011943624.1|1110513_1111497_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGRNYYVFSSGRIRRRENSILIEYQDRDGKQQKRFIPVENVDQIFFLGEVDLNSKFLDFAAKNNIVLHFFNYYGYYTGSFYPREKFLSGELLVRQVEHYLDNEKRLSLARKFVEGAIHNFKRNIEKRGFDIVSKISEYQERIKHVATIPELMSCEAHARKLYYSTWEDITDWPFEERSMQPPLNELNALISFGNSLTYSVVLKELYHTHLNPTVSYLHEPGTKRFSLALDISEIFKPIFVDRIIFKLINLGKIKRENHFLQESNGVFLNDEGRRIFVEEFENMLQQTVLHRKLKRKVKYQSFIRLEAYKIIKHLLGEDEYKPFKVWW
>NC_009486.1|WP_011943625.1|1111506_1112025_-|CRISPR-associated-protein-Cas4
MEEFDMLNVSGTMVSYYFTCKRKLWLFAKNIDMEQSQPTTDLIIGKLLNFERFKRERHKEVEIEDCVIDFLTFRGEIIVHETKKSKKFEEAHVWQTKYYMFVLRKYGLNVNHGVIHYPKLMRKLEVNFEDGDEEKIQNALIEIKQMVSSKIPPPVLNRSFCKKCSYYELCYV
>NC_009486.1|WP_011943626.1|1112027_1114319_-|CRISPR-associated-helicase/endonuclease-Cas3
MSKILAKSNGVTLREHVLDLLEVLENLQIDSGVRELAGKAILYHDLGKVIYAFQKKVGGDVPEDGIPDIPHSFLSIAFIPENTLRELGEGLSRIFLSAVLYHHWRETYLDYLFGRKKESVCKAYERLLEVGDEIVWLLREEMGDLCEIELNKPLCEYLSHNSIIDSGLVFPPHLISLLPSIILKELNIRDENYKRYIITSGTVMRADRFASYVETAGNKELLKKADKRLERDQLETVRRYLERISNKVWQLDLLKDCRGENIVLVAPTGAGKTEFALMWSKGKTLFTLPLQSATNMMYERVKNYFGEENVGLLHSDAAVYLFFSSFLKNNFEDREGEVLQIVEQSRFFSHPFVISTGDQVFPSALKYPGYEMIYSILANSYLVIDEIQAYSPEAAAIIVKTAEDVKQLGGHFLIMTATLPGFIRDEILKRAELEEKNIKDVYEDIPQGRLLRNLVKVEKSLDPVEKAVEFFKKGCRVLIVRNTVRNAIETYRQLVEKLGKEDVLLIHSRMTLEDRRRIEEILESYRPGAKGRNIILVSTQVVEASMDIDFDILLTDIAPADSLVQRMGRIFRKREWTEEFPNTFIYADSNEKKRKELIAGVYSEDVVSATLNALEGMFDIEKPFKLDELSKRKWVEETYQALSQGSNYLKKFRETLDVLDSGYSSEKKHEAHRIFRRVVSMSIVPENLKEDLKRELKSVSDYFDFRRVTAKYLVDVPLHHIKSGALEPLEVESENEQVLKWASALYVLKGSRYEKGLGIFLEE
>NC_009486.1|WP_011943627.1|1114321_1115104_-|type-I-B-CRISPR-associated-protein-Cas5
MKLLRIEVKASTAHFAIPFFIFERKTFPIPMYSTAIGLICNILSDESKIESFLNSEFSMAIVGNHEGVVEEYTWLRNLEKGSHVKKFKSLRNREINHEIEHPGGQMPTRIQTLVNPRVDLFVKAKEDVLEMIKQSLENPGYISRIHLGRSEDTVDEINYELVNCEKKKVFSTGGYTWIPSPEFADEVCDNYNELYQEIIGASYKVSSIYTIQNNKRIFDFIPAKLYYGSIPMIHFDVPEILSWNNIPIFLAKIRKSDRGG
>NC_009486.1|WP_011943628.1|1115100_1116099_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNEVKAITATVVFEACAVNRDENIANNVQSLKKLRREDGVYTFFSRSSMRHHIFNALVRKHGWKPAEVTTKGGVIQFNIEEESILTSEELDFFGYLSTGDVSISRKAPVGLTKAVSMEKWEGDMAFYANHDLVQRARERGEEANPNPFSKEEHFSFYKYSVVVDLENIGKDVVFTTDNEKEKLKKLFGVDMEKDEYPLPKGKILVKKSEKAYKISVLLDEKEKQRRLEQFFDVIINGFEIHSSTESWSVSPVFIVMATTKLPVTLFNPYVRLDGGKIDVETISQIAEENTNVKDYRIWGMPSILKGSSEKLCAGLNELNKWLREVIGGEENP
>NC_009486.1|WP_148186878.1|1116091_1117414_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MMEEIVKREGSIEKAYNYFKGNIGYYENYIANVSLTNKEIDELLPLVSNEQQREILLQVKEKKIKIPQIKKKSKELLSKFDDRDLEELRNFLLQSEKEKFRVYLSEIIRSIFRKPDLSGSERCFLCGNPLRLSENTSIRQRKQFSRILFKEFSSSEGEFPNSFWNINNEYHLCDLCSQFALFRHFVFPKNSKKEIFVNVPSFKAIWYLNEAIKAYKDLNIELSVSRAVAEVHMKLQRLLGVWERQNIEIVNYDGKSYSVYYVPQRTVDLLLNTRISSILNSINSIKIFETVIYPERLNKLIEVEYFLLKYFLNPGDDSKIKEYIEVFDPKKKRYYAWMIPELFQEVRNTLGVETVVPVWKMRELGREVSQLFERTRYRLLELIRLAKKDEVYHLLLKTYMANKKPFPEELNRVFSENDENFKNLMFAYVSGIISGGEENE
>NC_009486.1|WP_011943630.1|1117623_1118349_-|CRISPR-associated-endoribonuclease-Cas6
MRIFFRIFFKDNSQEVFPVDYRRIFMSVLKRVYEGTPFEEIVLSHDRIPKPYVFSVGFRRIKEISGDSIMFESPVFFNFSSSIPQMIGYLYNHIDRIKSFFKGTEILVDLPIPKMITSEKVNFKILGSAVLTRSEKDRYYLNPEDDDFEEALNHSLKVRLDLLKDIFEKFGVKAPGFKPVNIVSKDLKKVPVKHYGGVLEAFSGTITLSGNLNILNFLYENGLGVRTGQGFGMLKVVKEWR
>NC_009486.1|WP_011943631.1|1119281_1119632_+|J-domain-containing-protein
MNPYEVLGVPPGASKEEIEKAYRELVKKYHPDRYKDHPLRDLAEEKMKQINEAYAVLMSGEFSETPRQENVFNTFYSMGYRYRGNDDCRDILACLGCAWCTDTCCEACGGDCIPCM
>NC_009486.1|WP_011943632.1|1119622_1120093_+|hypothetical-protein
MHVKKVAYGGLISALVVLLLYIGNFTKSKIFFAALSSVFTGVLVELFGVGSVPIIIATNVLVFLLVPNPGYASLFFVLSFYGFLRKKPILIRFLYLNASTLLLVLFASKFFNAELPDVSFFLYALGFLGVQVAFFVYDYLYNRILQELLRIIRGKN

Crispr_ID: NC_009486_6

• CRISPR_ID: NC_009486_6
• CRISPR_location: 1171790-1172614
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 12 spacers

Consensus repeat of NC_009486_6

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_009486_6

>6.1|1171820|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
AAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCAT
>6.2|1171886|35|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTAT
>6.3|1171951|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CCACATTTCATATGCCTTTTTCAGATACCAAGCCCC
>6.4|1172017|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
TAGTCTATAATGTAATTGGACTTAAACATAGGAGTGA
>6.5|1172084|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCC
>6.6|1172151|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
TAACATCCCTCGCACTCGTCTTTTGATTCAAAAATT
>6.7|1172217|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
>6.8|1172284|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
>6.9|1172350|38|NC_009486|PILER-CR,CRISPRCasFinder,CRT
TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
>6.10|1172418|35|NC_009486|PILER-CR,CRISPRCasFinder,CRT
AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
>6.11|1172483|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CTGCGTGGGAAAAGATACCAATCACAACCCGTCTCA
>6.12|1172549|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
AAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATAT

CRISPR arrays and Neighbor proteins around NC_009486_6

CRISPR arrays

The CRISPR arrays of NC_009486_6

>merge|NC_009486|6|1171790-1172614|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACAAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCATGTTTCAATAATTCCTTAGAGGTATGGAAACCTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTATGTTTCAATAATTCCTTAGAGGTATGGAAACCCACATTTCATATGCCTTTTTCAGATACCAAGCCCCGTTTCAATAATTCCTTAGAGGTATGGAAACTAGTCTATAATGTAATTGGACTTAAACATAGGAGTGAGTTTCAATAATTCCTTAGAGGTATGGAAACCTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCCGTTTCAATAATTCCTTAGAGGTATGGAAACTAACATCCCTCGCACTCGTCTTTTGATTCAAAAATTGTTTCAATAATTCCTTAGAGGTATGGAAACCCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTTGTTTCAATAATTCCTTAGAGGTATGGAAACGCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACGGTTTCAATAATTCCTTAGAGGTATGGAAACTTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATTGTTTCAATAATTCCTTAGAGGTATGGAAACAGACCACCCCCACCAAAATTGCAAGAGAAGCGCTTGTTTCAATAATTCCTTAGAGGTATGGAAACCTGCGTGGGAAAAGATACCAATCACAACCCGTCTCAGTTTCAATAATTCCTTAGAGGTATGGAAACAAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATATGTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_009486|6|6|1171790-1172614|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCACATTTCATATGCCTTTTTCAGATACCAAGCCCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGTCTATAATGTAATTGGACTTAAACATAGGAGTGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAACATCCCTCGCACTCGTCTTTTGATTCAAAAATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGCGTGGGAAAAGATACCAATCACAACCCGTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_009486|6|6|1171790-1172614|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCACATTTCATATGCCTTTTTCAGATACCAAGCCCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGTCTATAATGTAATTGGACTTAAACATAGGAGTGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAACATCCCTCGCACTCGTCTTTTGATTCAAAAATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGCGTGGGAAAAGATACCAATCACAACCCGTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_009486|6|6|1171790-1172614|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCAAAGGAGAAAGCGCCCGTCAGGACCGGAGCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCCTGCCTTGCGCGGGTTGAACCGGAACCTTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCACATTTCATATGCCTTTTTCAGATACCAAGCCCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGTCTATAATGTAATTGGACTTAAACATAGGAGTGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTCTTTCTTCATCAACGAGGATCACCTCCCCATCTCC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAACATCCCTCGCACTCGTCTTTTGATTCAAAAATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGCGTGGGAAAAGATACCAATCACAACCCGTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTTTGTCTTCGTTTTTGTCTTGTAAGGTGATAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_011943676.1|1170419_1171145_-|aspartate-dehydrogenase	unknown	unknown	gnl|CDD|237342
NC_009486.1|WP_011943670.1|1165437_1166706_+|alpha-amylase	unknown	unknown	gnl|CDD|200452
NC_009486.1|WP_011943678.1|1174356_1174866_-|dihydrofolate-reductase	unknown	unknown	gnl|CDD|223340
NC_009486.1|WP_011943672.1|1167582_1168239_+|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943685.1|1182025_1182412_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943682.1|1177711_1178335_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943674.1|1168684_1169506_-|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl|CDD|272894
NC_009486.1|WP_011943673.1|1168235_1168694_+|YaaR-family-protein	unknown	unknown	gnl|CDD|224642
NC_009486.1|WP_011943677.1|1172737_1174321_-|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl|CDD|237369
NC_009486.1|WP_011943679.1|1174853_1176260_-|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl|CDD|183780
NC_009486.1|WP_012896369.1|1182408_1184772_-|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NC_009486.1|WP_011943683.1|1178327_1180886_-|SMC-family-ATPase	unknown	unknown	gnl|CDD|223496
NC_009486.1|WP_011943684.1|1180875_1182024_-|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl|CDD|223497
NC_009486.1|WP_011943669.1|1163384_1165436_+|elongation-factor-G	unknown	unknown	gnl|CDD|237186
NC_009486.1|WP_011943671.1|1167002_1167599_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	unknown	unknown	gnl|CDD|224627
NC_009486.1|WP_011943668.1|1161723_1163385_+|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl|CDD|378342
NC_009486.1|WP_004082152.1|1166720_1167002_+|DUF503-domain-containing-protein	unknown	unknown	gnl|CDD|224467
NC_009486.1|WP_011943675.1|1169510_1170407_-|quinolinate-synthase-NadA	unknown	unknown	gnl|CDD|236489
NC_009486.1|WP_011943681.1|1177073_1177694_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_009486.1|WP_011943680.1|1176256_1177090_-|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	unknown	unknown	gnl|CDD|235747

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_011943676.1|1170419_1171145_-|aspartate-dehydrogenase	gnl|CDD|237342	PRK13303, PRK13303, aspartate dehydrogenase.	6.59062e-116
NC_009486.1|WP_011943670.1|1165437_1166706_+|alpha-amylase	gnl|CDD|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.30097e-157
NC_009486.1|WP_011943678.1|1174356_1174866_-|dihydrofolate-reductase	gnl|CDD|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.4204e-38
NC_009486.1|WP_012896369.1|1182408_1184772_-|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NC_009486.1|WP_011943684.1|1180875_1182024_-|exonuclease-SbcCD-subunit-D	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	6.36313e-64
NC_009486.1|WP_011943674.1|1168684_1169506_-|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl|CDD|272894	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.2109e-118
NC_009486.1|WP_011943673.1|1168235_1168694_+|YaaR-family-protein	gnl|CDD|224642	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown].	4.47395e-53
NC_009486.1|WP_011943677.1|1172737_1174321_-|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	gnl|CDD|237369	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional.	0
NC_009486.1|WP_011943679.1|1174853_1176260_-|NADPH-dependent-glutamate-synthase	gnl|CDD|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NC_009486.1|WP_011943683.1|1178327_1180886_-|SMC-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	5.3043e-83
NC_009486.1|WP_011943669.1|1163384_1165436_+|elongation-factor-G	gnl|CDD|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_009486.1|WP_011943671.1|1167002_1167599_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	gnl|CDD|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	7.58528e-72
NC_009486.1|WP_011943668.1|1161723_1163385_+|phosphodiester-glycosidase-family-protein	gnl|CDD|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	1.62662e-19
NC_009486.1|WP_004082152.1|1166720_1167002_+|DUF503-domain-containing-protein	gnl|CDD|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	8.45038e-39
NC_009486.1|WP_011943675.1|1169510_1170407_-|quinolinate-synthase-NadA	gnl|CDD|236489	PRK09375, PRK09375, quinolinate synthase NadA.	1.35465e-158
NC_009486.1|WP_011943681.1|1177073_1177694_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.92331e-70
NC_009486.1|WP_011943680.1|1176256_1177090_-|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	gnl|CDD|235747	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein.	2.14622e-169

Protein sequences

>NC_009486.1|WP_011943676.1|1170419_1171145_-|aspartate-dehydrogenase
MTVLIIGMGNIGKKLAELRNFEKIYVYDRISKDIPGVVYLNEFQVPPDVSTVVECASPEAVKEYSFQILKSPVNYIIISTSAFADEVFRERFFNELKNSPARVFFPSGAIGGLDVLSSIKDFVENVRIETIKHPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGLVVGFEKVKVTIVADPDANHNVHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSILRTLRNLESKIVFG
>NC_009486.1|WP_011943675.1|1169510_1170407_-|quinolinate-synthase-NadA
MVDEILKLKKEKGYIILAHNYQIPELQDIADFVGDSLQLARKAMELSEKKILFLGVDFMAELVKILNPDKKVIVPDKSATCPMANRLTPEIIREYREKFPGAPVVLYVNSTSECKTLADVICTSANAVEVVKRLDSSVVIFGPDRNLGEYVAEKTGKKVITIPENGHCPVHQFNAESIDAVRKKYPDAKVIVHPESPKPVRDKADYVGSTGQMEKIPEKDPSRIFVIGTEIGMIHKLKKKFPDREFVPLEMAVCVNMKKNTLENTLHALQTESFEVILPKEVIEKAKKPILRMFELMG
>NC_009486.1|WP_011943674.1|1168684_1169506_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MEKIFDLLMSFVKEDEGKLDLASFPLRNTTASAHLLLKTENVVASGIEVSQIFLEKMGLLSKFHVEDGEYLERTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFTEKLKHAKIAATRKTLLGLGILQKIAVVHGGGDPHRFDLSGCAMIKDNHLKIYGCIERAVQEVRKIIPFTTKIEVEVENLEDALKAVEAGADIVMLDNLSPEEVKEISRRIKEINPHAIVEVSGGITEENVSLYDFETVDVISTSRLTFQEVFVDLSLEIQR
>NC_009486.1|WP_011943673.1|1168235_1168694_+|YaaR-family-protein
MRIDPLGGESLKNQEVKGKKSGKASKVGESKKKEFFDILEDVKEDHFEKLLEEAVEEVVDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHVVVEEVNEKLVDLTEKIMKNEWQTINLAAKIEEINGLILNLYR
>NC_009486.1|WP_011943672.1|1167582_1168239_+|hypothetical-protein
MKKSSKIVLAVVLIAVALAAVLFLYYRSFLTSPDYKAAEVHYLFRVGDNSYFVRIDDSKRMVFVVSFPSESFDPERREAIISERPLSDLEKMETLLDIKAERAFYSVMSEEEFLKLCQDLLGKQCESFPDFVKEFSKRKLKFFDFIFVGSWLKKFGFNNLNRFSLYKFFEKISNYAIDVFEAPTVTEKPIVIEVQGKKYERLYLDSEKLKAISEEMKR
>NC_009486.1|WP_011943671.1|1167002_1167599_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK
MVVITNEIESIMERLLSRKRINHVRSVVEFSRKLGEIYGADLNKIELAALSHDLFRDVPPRKLLKMARAYGLKISELERTHPVLLHGKVAAEFLKRRFNVEDEEVLNAVAYHTSGHVSFGTVGQILFIADSLEFTRDFPGVNELRRIAFRNLEEGFFQVLKNKIFYAVGKNYLLIPETVELWNSILMKRGGLIDEEVE
>NC_009486.1|WP_004082152.1|1166720_1167002_+|DUF503-domain-containing-protein
MSVGVVSLRVRLFGVRSLKEKRGILKRLMNDLRKKYNISISEVGAHDSKSFFEIGIAMVNTDRAVIERVFDSIIDYLDLYPGMEVEEIEREVW
>NC_009486.1|WP_011943670.1|1165437_1166706_+|alpha-amylase
MNFKRLIIYEAFARAYPGEKGKKFDSLMKDLERLKGMGINTVWLMPIHPTGMVERKGTLGSPYAIRDYYEIDPLIGTKDGFKRFVKRAHELNMYVLMDMVLNHAAADNVLVKEHPEWFLRDENGNPTRKVPDWTDIVDFDYSNGELRKYMINMMKYWVEEFDIDGFRCDVAGLVPLDFWLQVRKELDPLKRLIWLSETHDPYMYQAFDITYDYDGYYKFRDFIEGKGSLREYVDFLRMQDHMYPRGYIKMRFLENHDQPRIAKFIEEDSLIQWIAFLFTFKGVPLVHNGQEYGLKEDVDIFNEYTLPFPMEENRISILHRKLAHYRYGTGVFTEGEMLFVKNDQPEKVISYLWRYENRYILCVLNPLLESTKVTLDFSGIWESACIHSKNVFNDEIVRVPVKNSRATVEVGKEPLILSFVLY
>NC_009486.1|WP_011943669.1|1163384_1165436_+|elongation-factor-G
MGGLQNVRSVALIGHNGSGKSLLLAQLLYRSGLLDRADTKYVDYDPVEEEKGASFSSHVASLEWKGKKLYLIDTPGFSDFISEVINGIFVSENIISVVNAVAGVEIQTERTWNIADEMKKPIMVFVNQMDKERANFENVIAELKERFSRKIVPVVVPIGAAENFEGVVDLLKKKAYRYNGDKVQEEDMPENFNDVRSEILEDIVEQDEELMMRYLDGEEIGYDELMRVLREGYKKGEIVPVLSGSALKGIGLDVLLDYLGDIGSSPEEAPSYKALLEDGTEIEMKFSEEEPFCAYIFKSVVDQFVGRITFAKVIAGVLRSGDTIVNVQKDVSEKLGHIYVPILKQQKEVESAGPGEIVVLLKLKEGAVGETLAHRDRRVRVVPPAFPEPMFSRSVHPKTKSDIDKISNGLSRLSDSDPTFVWEYDPETGETVVSGLGAMHLDVMIERLKKIFGVDVEVGKPKIAYRETITTTAVAEHKHKKQTGGHGQYGHVKIQLEPLPRGQGYEFVDRIVGGVIPRNFIPSVDKGIREAMKKGVLAGYPVTDVRVILFDGSYHEVDSSDISFQIAAIQAFKKGMEAARPVILEPIMEVDVFVPEENAGDVMGEISSRRGRPLGMEPSGKGMVKVKAEVPLAEMLDFSSKLSSITSGRGYFTMRFQRYEIVPPNIQEKIIEERRREMQEQEK
>NC_009486.1|WP_011943668.1|1161723_1163385_+|phosphodiester-glycosidase-family-protein
MKQIVLVLLIFAGVAFGSYLISGGKAFPLRTVFNEGIYYVCAEDLAPAGVGYIHSNGYHYIVYDNHVLFIKEHETIFDFVEKLSPPFFVNGLLFVPIDALKKVMEGYQVYTKGEKVLIYDSLPIVLSATKEKNGVTITYTGTIVPDMVSVEKSMGRVRINLSPVVLSLPNVSEGVKVELEKNGLSFVVDVGNFYPDVEYSIEGGKLFFRFLLVEGFFGRLEVADGVVFERKIEDFGEGEKTVVNYLIMDPEKVTIKPVVSGNGFGTIERLDEMVKRVEGIAGINGNYFDPVTKFPIGLVVIDGKPYSAMFGGRPVFAITEDNRVFIGRIIVDVTLMMRDVLFLVKGINTLGEGEVLVYTREFSKEIPEKDDRIYFVVKDSKVSQIGYKSRAEDSEYVVSISKKYEKYLSDLKEGDGAYLSLQPNIPLRIKQAVEGGPLLIQNGAPIPDAWEEKARYGGGIAYAKAPRTVIATKDGKLWFLVFEGYNHITRGLTYDELVDFLISRGFEDAMCVDGGSSSVMAVAGSLFGRTENSTAAIPVGIVVWEKKKTEVGE
>NC_009486.1|WP_011943677.1|1172737_1174321_-|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit
MKRDFLGRTLAVIEDLSVEEQMFLYEKTRELKQRWYNGEDVSDFRIKKRNVGIYIVFVEPSTRTKESFINAAKFHSGPNVKVNVFDSEHSSFNKQESYTDTFSMLTGYSDYSIFVVRTRLEGVCRLLERRISEFASRNGIEVPSFINAGDGKHEHPTQELLDEYTFLEQNGFDNSFIHVALVGDLLHGRTVHSKVNGLKIFKNVKVDLVAPEELMMPEHYVEKMKKNGFEVRIFSSIREYLSQKDVAKIWYFTRLQLERMGEDILEKVHILREAVTFKKEYLDALPEGVKFYHPLPRHKVYPTIPNFLDTLPLNGWETQARNGYWVRIVLLSMFGGALEAPFDTSKKEEKPEEDFIIPAPITHGSKGVQKEGKRGIKPIENGTVIDHIAKGKTPEEIYSTIVKIRKILRLYDVDSADGIFRSSDGNFKGYISLPDRYLSKREIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHGENASPSFVRDEKGQFICEYCETPHSFEEIWSI
>NC_009486.1|WP_011943678.1|1174356_1174866_-|dihydrofolate-reductase
MAKVIFVLAMDVSGKIASSVEGWNSFEDRKNFREITTEIGNVVMGRVTFEEIGRPLPERLNVVLTRRRRSSNDPSLVFFNGSPGDVVKFLEGKGYEKVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLKYSVEKSHR
>NC_009486.1|WP_011943679.1|1174853_1176260_-|NADPH-dependent-glutamate-synthase
MKNRKTPMKEQSPESRRRNFEEVALGYTLEEAVAEAQRCLQCPTHPCVSGCPVGIDIPGFIRKLREGKLEESYRILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSEPVAIGRLERFVADWAAENLEEEVKPLAGSKKEKVAVVGSGPAGLTAAADLAKMGYHVDVFEAFHKPGGVLVYGIPEFRLPKGIVEREVNYIRKLGVNFYLNTVVGKTVKVKELLSEYDAVFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKKVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYIGDANGNVEAVECVRMELKEADGSGRPRPVPIEGSNFILEVDMVIEAIGQGPNRVLLSEFPGLKLNEHGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLTGEWNPWQK
>NC_009486.1|WP_011943680.1|1176256_1177090_-|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein
MNEIVKKTKIAEDVFDFWVHSPSVSKEAGPGQFVVIRLHEKGERIPLTVADTRPEKGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIKNYGNVLLVGGGVGIATLYPIAKALKNVGNNITTVLGARTKDYLIMVDEFKKISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLKRLAQYREQEKISYERFLRAAGESE
>NC_009486.1|WP_011943681.1|1177073_1177694_-|ABC-transporter-ATP-binding-protein
MKKSYGKKKVLDGVSFSLEKGKSLGIVGQNSAGKTTLLKILATILKPDEGRLFLFEKDALKDLSYIRKRIAFVPEFPALLEELTVRENLLFFSRLRGVKMESFIVSEFMLEPFMGTLVRNASKGVKQRTALAAALFGNPELLILDEPTSGLDVESASIVRSKLKRLKEEGITVIISSHIREDIEELCDEILVINGESGGSNLERDR
>NC_009486.1|WP_011943682.1|1177711_1178335_-|hypothetical-protein
MSDEKRRKKEELIERIVSEKGEEAFPKLLELLEDEDPEVKEIVSEVFYRLGDRAREFLFNEIQKRRERGFEKNDITNLYIIDILGDLGEKRMKNVLYELMEKYDSEEALLIIYEALAKIGEGEVFLPELEYLMFEDAYRKELCEQVAMVLANIPTERSLRILLKALKNKEFSEGQKEFFRRAVEMILYRKPELSKYVTDEERKELGL
>NC_009486.1|WP_011943683.1|1178327_1180886_-|SMC-family-ATPase
MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPASVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLTSPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSLQALYAASWKYLEENDLEVLKSELKTVSEKKKELLKKREELQKEEEQLKRLLEKYRELVKKKERLKALSLRKNELQKEVVHEQKVKKAKELEPLFRELYLRQREFERLSQDLNSREERYKELEKKKEAISKEIPVHRERLSKLEEMAEKINEELDLLEKVLKASRPLLEQRIRLKENLIRLEEEIRRLVGEKEKRKKELFSIEKTENETKDELEKLLEELSVLKKDHMKWLAYQIASSLNEGDTCPVCGGVFHGKVEAVEFNVDELEKLDQKRSELENTLNVLKERKKSLSSLIEDLLMKTEEGKKNLKSIRNQIEKIEEELHRLGYSEDLEEKLDEKRKKLRKIEEERHSISQKITAADVQISQIENQLKEIKGEIEAKRETLKEQREEMDQLKRDFFDRLGEIGIGFEEFRILVKEEVKDAEKELGIVETEIRLLEGSLKELESENVRDVSEDYERVRNQLEALSQEISDLERKEGRLNHLIEETLRRERELKSLEKKLKELSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRIMGGVVVNE
>NC_009486.1|WP_011943684.1|1180875_1182024_-|exonuclease-SbcCD-subunit-D
MKELRILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKRGVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFITSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLSGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIKIDFGEEADEKGAVFVELKRGEPPRYERIDVAPLPLKTLYYKKIDTSALRSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSKREIEEVLRESMEEFKEELDKIDYFELFKEYLKKREENHEKLLKILDELLDEVKKSEA
>NC_009486.1|WP_011943685.1|1182025_1182412_-|hypothetical-protein
MKRDIFYVIILTVFAVLFMLTYFSYRNLAVKLTRMEKTLKAYELYIFSDYESFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKAFNLSDNEEIKKIASFYLEECRKKLAGD
>NC_009486.1|WP_012896369.1|1182408_1184772_-|endopeptidase-La
MPKKSKDTEKSFKILEKYASQQEKELEIPDSLPCIPLRNGMGVFPNTVVPFYVGRTGSLIALEEAMEKYNRLLLVVNQKDPSVETPEPEDLYKVGTVVKVLQIMKLPDDTFKVLVEGLERAQIEEFVSTDPFFLTKIKILKVKYRKTKKLEALMRSVKDKAVRYFNLTHRFPQETLVTLKEMQDPDKLADFVASILPVPLETKQELLETIHPLERLEKILSILVKEIEILEIEEEIEKKVKDRIEKTQREYVLREKLRAIKEELGAEEELEIKELYEKVEKGDYPDYVKEKAYKEIQRLEKMSPYSAEATVVRTYLDWLLNLPWSAASEDRLDIKEAGKILDKNHYGLEEVKERILEYLVARKFSKNLKAPILCLVGPPGVGKTSLGRTIAEAMGRKFGRMSLGGLRDEAEIKGHRRTYVGALPGRIIQIIRRLGTKNPVILLDEVDKMGISFQGDPASALLEVLDPEQNKDFVDHYLEVPFDLSQVLFITTANVLHTIPPALRDRMEIIEIPGYSDPEKYHIARDYIIPKIAQAYGLSKVMFTPGAIKKIIREYTKEAGVRNLERVIEKVIRKSLVKGEKKSFKITTKDIEELLGPPVFKEEEILEEDTVGAVTGLAWTPVGGSVLIVESLLVPGKGNLILTGNMGDVMKESARIALSVVRKMCGEECREVFEKNDIHIHVPEGAVPKDGPSAGITITVALYSAVTGKKVRRDVAMTGEITLRGKILPVGGIREKLLAAKRAGIKKVILPSRNRPDVEKIPKEYLNGMEIVYCSEIQEVLKEAIVR

Crispr_ID: NC_009486_7

• CRISPR_ID: NC_009486_7
• CRISPR_location: 1221108-1221202
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: WYL

Consensus repeat of NC_009486_7

Consensus_repeat	Method
GGTTTTTTCAATTCGAATAATCGAAAGAAC	CRISPRCasFinder

spacers of NC_009486_7

>7.1|1221138|35|NC_009486|CRISPRCasFinder
GAGGAGAGACGAGAGGGGCGAAATTCAAAATTTTT

CRISPR arrays and Neighbor proteins around NC_009486_7

CRISPR arrays

The CRISPR arrays of NC_009486_7

>merge|NC_009486|7|1221108-1221202|CRISPRCasFinder
GGTTTTTTCAATTCGAATAATCGAAAGAACGAGGAGAGACGAGAGGGGCGAAATTCAAAATTTTTGGTTTTTTCAATTCGAATAATCGAAAGAAC

>NC_009486|7|7|1221108-1221202|CRISPRCasFinder
GGTTTTTTCAATTCGAATAATCGAAAGAAC	GAGGAGAGACGAGAGGGGCGAAATTCAAAATTTTT
GGTTTTTTCAATTCGAATAATCGAAAGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_004082012.1|1228137_1229220_-|hypothetical-protein	unknown	unknown	gnl|CDD|238709
NC_009486.1|WP_011943724.1|1225693_1226314_+|hypothetical-protein	unknown	unknown	gnl|CDD|379633
NC_009486.1|WP_011943715.1|1217312_1218314_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl|CDD|223691
NC_009486.1|WP_011943707.1|1209525_1210221_+|UMP-kinase	unknown	unknown	gnl|CDD|173023
NC_009486.1|WP_011943711.1|1214455_1214809_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943718.1|1221912_1222656_-|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl|CDD|378455
NC_009486.1|WP_008194872.1|1211489_1212011_-|transcription-repressor-NadR	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|224740
NC_009486.1|WP_011943720.1|1223036_1223234_-|50S-ribosomal-protein-L35	unknown	unknown	gnl|CDD|234676
NC_009486.1|WP_011943725.1|1226292_1227546_+|glycerate-kinase	unknown	unknown	gnl|CDD|225254
NC_009486.1|WP_011943726.1|1227535_1228144_-|ComF-family-protein	unknown	unknown	gnl|CDD|223970
NC_009486.1|WP_004082010.1|1229232_1229676_-|hypothetical-protein	unknown	unknown	gnl|CDD|224889
NC_009486.1|WP_011943712.1|1214798_1215368_-|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|236608
NC_009486.1|WP_011943708.1|1210217_1211486_-|MFS-transporter	unknown	unknown	gnl|CDD|340874
NC_009486.1|WP_011943709.1|1212031_1213687_-|radical-SAM-protein	unknown	unknown	gnl|CDD|223962
NC_009486.1|WP_048810876.1|1224550_1225273_-|GGDEF-domain-containing-protein	unknown	unknown	gnl|CDD|143635
NC_009486.1|WP_083756017.1|1223248_1223761_-|translation-initiation-factor-IF-3	unknown	unknown	gnl|CDD|234582
NC_009486.1|WP_038052698.1|1213683_1214466_-|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943714.1|1216514_1217312_+|purine-nucleoside-phosphorylase-I,-inosine-and-guanosine-specific	unknown	unknown	gnl|CDD|350160
NC_009486.1|WP_048810874.1|1215400_1216465_-|alanine/ornithine-racemase-family-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|143490
NC_009486.1|WP_011943719.1|1222666_1223023_-|50S-ribosomal-protein-L20	unknown	unknown	gnl|CDD|179959

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009486.1|WP_008194872.1|1211489_1212011_-|transcription-repressor-NadR	WYL	COG2378_WYL_CAS-I:CAS-III	1.1e-11	39.5	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_004082012.1|1228137_1229220_-|hypothetical-protein	gnl|CDD|238709	cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.	0.000952872
NC_009486.1|WP_011943724.1|1225693_1226314_+|hypothetical-protein	gnl|CDD|379633	pfam14512, TM1586_NiRdase, Putative TM nitroreductase. Compared with the more traditional NADH oxidase/flavin reductase family, this family is a duplication, consisting of two similar domains arranged as the subunits of the dimeric NADH oxidase/flavin reductase with one conserved active site.	3.4554e-65
NC_009486.1|WP_011943715.1|1217312_1218314_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl|CDD|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.3911e-91
NC_009486.1|WP_011943707.1|1209525_1210221_+|UMP-kinase	gnl|CDD|173023	PRK14558, pyrH, uridylate kinase; Provisional.	3.60914e-148
NC_009486.1|WP_011943718.1|1221912_1222656_-|Mrp/NBP35-family-ATP-binding-protein	gnl|CDD|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.21291e-124
NC_009486.1|WP_008194872.1|1211489_1212011_-|transcription-repressor-NadR	gnl|CDD|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	8.81766e-60
NC_009486.1|WP_011943720.1|1223036_1223234_-|50S-ribosomal-protein-L35	gnl|CDD|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	5.32247e-16
NC_009486.1|WP_011943725.1|1226292_1227546_+|glycerate-kinase	gnl|CDD|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NC_009486.1|WP_011943726.1|1227535_1228144_-|ComF-family-protein	gnl|CDD|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.83381e-53
NC_009486.1|WP_004082010.1|1229232_1229676_-|hypothetical-protein	gnl|CDD|224889	COG1978, COG1978, Uncharacterized protein conserved in bacteria [Function unknown].	1.36529e-65
NC_009486.1|WP_011943712.1|1214798_1215368_-|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	2.98592e-46
NC_009486.1|WP_011943708.1|1210217_1211486_-|MFS-transporter	gnl|CDD|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.45427e-60
NC_009486.1|WP_011943709.1|1212031_1213687_-|radical-SAM-protein	gnl|CDD|223962	COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion].	0
NC_009486.1|WP_048810876.1|1224550_1225273_-|GGDEF-domain-containing-protein	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	9.31545e-42
NC_009486.1|WP_083756017.1|1223248_1223761_-|translation-initiation-factor-IF-3	gnl|CDD|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	2.83244e-85
NC_009486.1|WP_011943714.1|1216514_1217312_+|purine-nucleoside-phosphorylase-I,-inosine-and-guanosine-specific	gnl|CDD|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.19913e-147
NC_009486.1|WP_048810874.1|1215400_1216465_-|alanine/ornithine-racemase-family-PLP-dependent-enzyme	gnl|CDD|143490	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	0
NC_009486.1|WP_011943719.1|1222666_1223023_-|50S-ribosomal-protein-L20	gnl|CDD|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	3.36375e-54

Protein sequences

>NC_009486.1|WP_011943715.1|1217312_1218314_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MDEIVKVLSRHDKILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVFEKFPHIDKIEENLNFDPELLVVVDVSSPDRIGKFQDFLDKVPSVVIDHHSTNVKFGNWNWVDPSFAATAQMIFRINEALGVEYDSKLATLNYLGIATDTGFFRHSNADVRVFEDAYKLVKMGADAHFVAKEILENKRFEQFKLFAEVLERLQLLEDGKIAYSYIDYDTYLKHNCTDEDSAGFVGELRSIRGVEVAVLFMEFPRGKIHVSMRSKDWFNVNEVAFELGGGGHPRAAGVTFEGEKIEEVIPKVINHLLKKFKEGVESESEKISEGNVLGG
>NC_009486.1|WP_011943714.1|1216514_1217312_+|purine-nucleoside-phosphorylase-I,-inosine-and-guanosine-specific
MMKKIEEARTFISERTNLSPEILIILGSGFGSFIEKVGDPVTIDYKDIPHFPQPTVEGHSGKLVFGRISDRPVMIMAGRFHLYEGHDPATVAFPVYVAKYMGVKGVVVTNAAGAINPEYKPGEIILVRDIINFMFRNPLRGPNDERIGPRFPDMSSVVDPEWARKIQERLGLKVGVYIGVLGPSYETPAEIRTFEKLGADLVGMSTVPEVIAAKHCGLKAIVFSCVTNMAAGITHGRLSHEEVVRTTKMAQGKIEKALTTTVEVF
>NC_009486.1|WP_048810874.1|1215400_1216465_-|alanine/ornithine-racemase-family-PLP-dependent-enzyme
MVYPRLLINLKEIEENAKKVVEMASRRGIEIVGVTKVTLGDPRFAETLRKAGIKILGESRIKNVLRMKKAGIEGPFMLLRLPMMSELVEDVRHFDYIMVSDPDVAKKVDELSREIKRNVKIIYMIDVGDLREGVWFEKAVEEIAQCKGTNVVGIGANFGCYGGIIPTREKFEILLDIKEKLEKNHGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAIVLGRDITNNRVIDWLSQDTFLIEAEVIEVKEKQSVPLGKKGLDVFGRKIEFVDRGIRKRAICALGEQDIDSRGLIPVDKGVEVLHASSDHIVLDVTDFGDVKVGDVFRFRMTYSCLLKAMTSPFVEKVYEPSI
>NC_009486.1|WP_011943712.1|1214798_1215368_-|sigma-70-family-RNA-polymerase-sigma-factor
MNEKKLVEALKRKEDWAYEILYREFAPKIGSIAKSFLNTDDVDDVVQDVFLRIFKGIKKFRGDSKLSTWIYRIAVNVCKDYLQKYKKRNEFLTDFQEKDNEEEIYIQPEAKEDVFDEVLRSITAERVQKALEKLSPEDRLLIKLRDIDGLSYEEIASVLQKPVGTVKSRLHYARKRLGNLLKEGGTVER
>NC_009486.1|WP_011943711.1|1214455_1214809_-|hypothetical-protein
MKDDRLNRILDGEEPIEGLPEELLRDYRIYREAITLFRIRCEYVPSERLMRKIMKKRRKKLVLSTVFAGIAVSLLLLSVVLDIFPVSPSRKVVQKQNPVVKELIDYIKTVEVVSDGW
>NC_009486.1|WP_038052698.1|1213683_1214466_-|hypothetical-protein
MDGDSVKKYVLVVLFFLAATIFALPEIVEKWMYANYYAKRIMVEIGLKSRFRYEEVYKWGADKMVLVHEPVSVNWVRLGQSCYMGSGTTLKRSPMLILDLEDLAFKEILQGRDLKIEETNEGYEIYIHDTGEYRVLLSSDGFPKEIERNYMDTKSKLIYEEVKPLSADKNEILKDYTLVDSGVEFPKELVDILSNFRFLIIREGTSGLEIEGIYKNGQKVEIFIGNDLPKGGLQISINGLKIAIVADEKTLEEIKVILGQ
>NC_009486.1|WP_011943709.1|1212031_1213687_-|radical-SAM-protein
MRALIVDGYIDEPAAFGVPPYVSPYIRYLAGALVVHDVEVDYVTIDRMRKESLWEIANEYDFLFVFGGITVPGRYKGGTPLTLSELQRILSITRRPTKIVGGPIVGGYSLRGGSVARRFDIQADYLVSGDMEAFVVSYFRGVPDPEAKSDYELIDAVAPYGAVVLEKHPNFPHVICEIEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAGCRAFRFGRAANILAFGSDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNTPGDVFSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNLIFGLPGETEETLKKNYSYLKRILDEGYLLRRINIRKLLAYPGTPVYEYLKNKKHRIKSHLHEQWKRKIREEIDREMLKRVFPAGTVLKKVIVEYREGKTSFGRQLGSYPILVGIPGNHSGVLDVVVVSHGERSVTALPYPSFINSMSLEELTAIPGIGSALARKIILNRPFRSWEDLKKVVPAETVNFLRKLGISLQQV
>NC_009486.1|WP_008194872.1|1211489_1212011_-|transcription-repressor-NadR
MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGKSGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGVHLHTIEAPDEETMERIMRELKKKGFLIEEG
>NC_009486.1|WP_011943708.1|1210217_1211486_-|MFS-transporter
MRIDEIVEKYVDRKTQRRFLILTSIAWMFDAAGVMLLSFVLPYVIKEWNLTSTQGATIASATFLGMLFGALSVGFVADLLGRKVSNLFFFIVTITFTFLSGFSSSFETLLVLRGLSGFGYGGLMPSFNAYLAEFTSIRLRGRYLVLLESSWAVGSILIGLFAVNVLPNWRWVFWIFSIGYLFVPVFLRMPETPKYAFLKGGKEALERSLGKRVEEEVELPKKEKVPILALLKREHLKDTVVIWIAWFVVSFVYYALFTWAPRIFSSLGVSVVKSSWFTFYMMVAQLPGYLSAAYFIEKWGRKASLGVYFIGTGLVALLWANVRGDASLLAAALVLSFFCLGVWGLVYAYTPELYPTPLRGTGNGAAGVWARIAGIIAPYYTGFMMEKGKSIAETLAWISAMAMFAGVIVLMFGRETKGKYVD
>NC_009486.1|WP_011943707.1|1209525_1210221_+|UMP-kinase
MRVLVKLSGEALSGEGGRGFDPERVNYIVTEIKSVVEEGFKIGIVVGAGNLFRGVELKNLTMARADQIGLLGTVMNSVYLKDIFERSGLKARIYSQIVNLPDVERVNYDSIESALRENSILIFAGGTSNPFFTTDTAAVLRAQEMKAKLVVKATKVDGVYDKDPKKFPDAKKIPHLTFSEAMKMGLKVMDAEAFALCKKLGITVKVINFFEPGTLLKALKGEDVGSTVVPD
>NC_009486.1|WP_011943718.1|1221912_1222656_-|Mrp/NBP35-family-ATP-binding-protein
MEKTKKIAVMSGKGGVGKTTVAVNLAVALAAEGYHVGLLDLDLHGPNVQRMLGVSLPPSESEKIVPAKYGDSLKVFSLAMILQEGAPVIWRGPLKHKAIEQLTRDVEWGDLDYLVCDLPPGTGDEALSTFQIIKPDAVIIVSTPQKVAGDDVRRAINFVKRLNGRVLGLVENMSYLICPSCGEKIYVFGKGETEKLSEEFRIPLIARIPMDPEVVSLSDEGKPAVVYKRGTTIEEEFKKIVEKVLSL
>NC_009486.1|WP_011943719.1|1222666_1223023_-|50S-ribosomal-protein-L20
MRVKRAVHAKKKRKKYLKAAKGYRGALSRRYKLAKQMYVRSKWYSYVGRKLKKRDMRKLWITRINIAARNEGLKYSEFIHGLKLAGVSINRKMLSELAVNDPEAFREYVKIAKEALAS
>NC_009486.1|WP_011943720.1|1223036_1223234_-|50S-ribosomal-protein-L35
MPKMKTNRSAAKRFRITKNGKIMRNHAYRSHKTGKKRRNTLRELRKKDVVSSTDKYRILRLLGKK
>NC_009486.1|WP_083756017.1|1223248_1223761_-|translation-initiation-factor-IF-3
MGVNTDLPRNEQIKAPKVRVVDENGKMIGVIPTRKALELAKEKGLDLVLVAPNENPPVAKIMDYGKYKYQLTKKQKENKKKTVQLKQMKFRLNIDEHDYQTKVKHIRRFLEEGHKVRVVVMFIGREMMFAEKGKEILERVIKDTEDLAAVENPPKMEGRDMWMVLKPKNS
>NC_009486.1|WP_048810876.1|1224550_1225273_-|GGDEF-domain-containing-protein
MITHLTAAVLLFFFVVIVRKYARNLGSYFLELGVSIITGGLLLTEINGTFGYNIILVGIVVTFFGVTKIFKRLKEIAIKDYLTGLYTRYYFFEEWLPMEMERQKRKNGKGISFLIIDLDDFKTINDKYSHRMGDKLLKYVASEIIKNIRKTDCAVRFGGDEILIAFPDTDKKTVENIVKRLEKKLIFNPVGLPIEFSYGIETWKPGENVEGVVQNADLQMYALKNLKKQKRVLTEEPEVD
>NC_009486.1|WP_011943724.1|1225693_1226314_+|hypothetical-protein
MNIFEAIENRHSVRDFLERKMPERVKDDIENLLVKFITKKLDWKINLSSFPSYIYAKAEKHFDELVEYGFQGEQIVLFLTAQGFGTCWMARSPHPDVPYIIVFGYPRTRNFTRKRRPITSFLENDLEELPPEIVKIVEMTILAPSALNRQPWKIKYTGGELCISSERPVDLGIALSHAYLTAREIFKREPVIQKREEDTYCLILNP
>NC_009486.1|WP_011943725.1|1226292_1227546_+|glycerate-kinase
MFDPESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGEKIRKGVVVTKYGHSEGLIDDFEIYEAGHPVPDENTIKATERVLELVDQLNENDTVLFLLSGGGSSLFELPAEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDNSTSEDALKVLERYGIEISESVKRAILRETPKHLSNVEIDLIGNVQKVCDEAKKLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIGGRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLENNDSYNALKKSGALLITGPTGTNVNDLIIGLIV
>NC_009486.1|WP_011943726.1|1227535_1228144_-|ComF-family-protein
MLNYLFENNCLLCGKEVSPLRSLCENCEEKVLKNGPSFYREVHRKYELFVYSDYTDEIERIIRLYKYHGEVSLSGTLVKLFLKLYSYFPREANLITWVPSSLDSLENRGFDHMRLLAKRMSKELGIPFDAVLENVSEGRQVEKSKEERKRTGRFICKKDPPQNVILIDDVLTTGTSVRDCVETLFRNGVSKVFVYVLAKTRR
>NC_009486.1|WP_004082012.1|1228137_1229220_-|hypothetical-protein
MRILLSVSRFEDELIEILDRLDETYEIFADNDCFEILKDRIPRIRPFERDDFDLLYLNWRDLPSEKREEKILSTIDENRTLLFLKAIKNYREKLVVTTLEDLKLTFSEIERAGDVSLQTRRYLLLKGLAHFLKVHSEVLESLSDLFFIKDWKAIVLERLQEGIKAPVSLLPVSIPPELVEDIGLASHLIRFLPQKACVLVKNGKIVYASSTGDLPEIEGGVFALKGVFRGEKKFDFILAEDFEGDVEGLRIKDLLHQEEGLVLLGASGYLREPVPTNDFTEVLSMHPVFDSCAVTKEGKLVLHVVELNRSDVINALEKIDLSGTEVAFNFPISDEEKAELKQKGVKKVSWIDSRRIWRRC
>NC_009486.1|WP_004082010.1|1229232_1229676_-|hypothetical-protein
MKSPTWGKVDYRTVRELIKKFTEGYKYSVFVGTDSDVKDGKVIYATALVVYRFGSGATYFYTVYRDGNGKDLYSRIFKEAEMSLEMARFVEEILKLGKPVVHLDIGYEGLTKDLVSSVIGYVKGVGYPYQIKPDSFAATKIAHKHTK

Crispr_ID: NC_009486_8

• CRISPR_ID: NC_009486_8
• CRISPR_location: 1280989-1281151
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 2 spacers

Consensus repeat of NC_009486_8

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder

spacers of NC_009486_8

>8.1|1281019|37|NC_009486|CRISPRCasFinder
TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC
>8.2|1281086|36|NC_009486|CRISPRCasFinder
TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA

CRISPR arrays and Neighbor proteins around NC_009486_8

CRISPR arrays

The CRISPR arrays of NC_009486_8

>merge|NC_009486|8|1280989-1281151|CRISPRCasFinder
GTTCTTGTACCTCTGAAGACGCATTGAAACTGGCTCAATATCGTGGACCACGACTACAGGGAGGAGCGTTTCCATACCTCTAAGGAATTATTGAAACTGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGAGTTTCCATACCTCTAAGGAATTATTGAAAC

>NC_009486|8|8|1280989-1281151|CRISPRCasFinder
GTTCTTGTACCTCTGAAGACGCATTGAAAC	TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA
GTTTCCATACCTCTAAGGAATTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_004081907.1|1273479_1274796_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223717
NC_009486.1|WP_011943767.1|1284636_1285287_+|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl|CDD|223366
NC_009486.1|WP_011943763.1|1279255_1280080_-|endoglucanase	unknown	unknown	gnl|CDD|366751
NC_009486.1|WP_011943761.1|1278283_1278706_+|RrF2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|273242
NC_009486.1|WP_011943772.1|1289469_1289880_+|transcriptional-repressor	unknown	unknown	gnl|CDD|223806
NC_009486.1|WP_011943762.1|1278667_1279105_-|ferritin	unknown	unknown	gnl|CDD|224548
NC_009486.1|WP_011943766.1|1283755_1284640_+|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
NC_009486.1|WP_004081900.1|1276760_1277381_-|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NC_009486.1|WP_011943770.1|1287220_1288381_+|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|273415
NC_009486.1|WP_004081884.1|1282078_1283056_+|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|237845
NC_009486.1|WP_048810880.1|1289876_1290269_+|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943768.1|1285288_1285990_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl|CDD|132571
NC_009486.1|WP_011943771.1|1288381_1289455_+|amidohydrolase	unknown	unknown	gnl|CDD|349882
NC_009486.1|WP_011943758.1|1273194_1273473_-|ferredoxin-family-protein	unknown	unknown	gnl|CDD|225289
NC_009486.1|WP_011943760.1|1277386_1278256_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl|CDD|224491
NC_009486.1|WP_004081904.1|1274792_1275809_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NC_009486.1|WP_008194733.1|1272843_1273185_-|hypothetical-protein	unknown	unknown	gnl|CDD|238244
NC_009486.1|WP_011943769.1|1286005_1287211_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NC_009486.1|WP_011943765.1|1283060_1283771_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|223331
NC_009486.1|WP_011943759.1|1275801_1276659_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|224997

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_004081907.1|1273479_1274796_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.11584e-92
NC_009486.1|WP_011943767.1|1284636_1285287_+|4-hydroxy-tetrahydrodipicolinate-reductase	gnl|CDD|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.39276e-90
NC_009486.1|WP_011943763.1|1279255_1280080_-|endoglucanase	gnl|CDD|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	3.08905e-28
NC_009486.1|WP_011943761.1|1278283_1278706_+|RrF2-family-transcriptional-regulator	gnl|CDD|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	1.27805e-48
NC_009486.1|WP_011943772.1|1289469_1289880_+|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.77711e-33
NC_009486.1|WP_011943762.1|1278667_1279105_-|ferritin	gnl|CDD|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.39053e-27
NC_009486.1|WP_011943766.1|1283755_1284640_+|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.60945e-165
NC_009486.1|WP_004081900.1|1276760_1277381_-|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.10698e-10
NC_009486.1|WP_011943770.1|1287220_1288381_+|diaminopimelate-decarboxylase	gnl|CDD|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NC_009486.1|WP_004081884.1|1282078_1283056_+|aspartate-semialdehyde-dehydrogenase	gnl|CDD|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	1.72306e-151
NC_009486.1|WP_011943768.1|1285288_1285990_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl|CDD|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	7.98127e-118
NC_009486.1|WP_011943771.1|1288381_1289455_+|amidohydrolase	gnl|CDD|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	2.55543e-135
NC_009486.1|WP_011943758.1|1273194_1273473_-|ferredoxin-family-protein	gnl|CDD|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.09247e-41
NC_009486.1|WP_011943760.1|1277386_1278256_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl|CDD|224491	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].	1.30243e-94
NC_009486.1|WP_004081904.1|1274792_1275809_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.69217e-138
NC_009486.1|WP_008194733.1|1272843_1273185_-|hypothetical-protein	gnl|CDD|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	0.00467565
NC_009486.1|WP_011943769.1|1286005_1287211_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_009486.1|WP_011943765.1|1283060_1283771_+|diaminopimelate-epimerase	gnl|CDD|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	1.96771e-70
NC_009486.1|WP_011943759.1|1275801_1276659_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.33949e-96

Protein sequences

>NC_009486.1|WP_011943763.1|1279255_1280080_-|endoglucanase
MRWVVLLMVAFSALLFSSEVVLTSVGAADISFNGFPVTMELNFWNIKSYEGETWLKFDGEKVEFYADLYNIVLQNPDSWVHGYPEIYYGYKPWASHNSGVEFLPVKVKDLPDFYVTLDYSIWYENNLPINLAMETWITKSPDQTSVSSGDAEIMVWFYNNVLMPGGQKVDEFTTTVEINGVKQEAKWDVYFAPWSWDYLAFRLTTPMKEGKVKFNVKDFVQKAAEVVKKHSTRIDNFEELYFCVWEIGTEFGDPNTTTAKFGWTFKDFFVEVVK
>NC_009486.1|WP_011943762.1|1278667_1279105_-|ferritin
MKVSDILTVAIRLEEEGERFYRELSGHFDGEIKKTFLELADQERAHAEIFRKISDQENWDEVDSYLSGYAFYEVFPDTSEILKRKDLTLKEVLDIAISVEKDSIILYYELKDGFVNSDAQKTVKKIIDQEKEHLRKLLEMKREST
>NC_009486.1|WP_011943761.1|1278283_1278706_+|RrF2-family-transcriptional-regulator
MFGKCQKHVRYALRLLVRLSLENRPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGFVLAKSPDEISFLDVISVFEKDLVIVDCNSRCKNYRACRVKYFWNWLSDYLKDLFSNITIKDIASGTFTFHLEKLS
>NC_009486.1|WP_011943760.1|1277386_1278256_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MKYFVAVRPFSFVASAFPVTVGAMLAEEFSLTRYILSLIASIFLHAGVNTTNDYFDYKKGVDTKDSLGSSGLLVSGKITPREELLLSVFCYAVSVVLGLVLIKISGPALLWLGLTGLVLGYAYTGHPFYLKYKSLGMFLVFILMGPLMVLGAYYVQTGRFSLEALLVSIPVGIATDLILLANEIRDSEFDRRSGIKTLPILIGDRAASFLYAVLTGLIYVFIVILVSTGVFRVISLVSLVSLPLYIRVIKQLFQKSAGRKNAREIADVDKMSALAEMILFVSMILGLLR
>NC_009486.1|WP_004081900.1|1276760_1277381_-|CPBP-family-intramembrane-metalloprotease
MVKRISEISFLSVLIGLFLGWYFVFQVNMLDFWWRMFMTTLIFSVISIFLGGKRNIKPNKYEAPLAIYSAVAAYLLFVVGYLISLLIPPFHRDVVSVYGLAEGQNALKVIILLVFIAFFEEIIWRGFVTEFLLQRLDVVPSILISSLLYSVVHVFTGNMALIVGAFVLGIILSLLYVITGKVSTPAFAHALWSLLIFVVLPLKGGF
>NC_009486.1|WP_011943759.1|1275801_1276659_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNVVVCIKQVPDTTNVRIDRKTNNLVREGVPSIINPDDERALELASQLKEKFGATVYVITMGPPQAKEALKDAIAFGLDEAVHLSDRTFAGADTLATTYTLYWGIKKIEERIGKIDLILTGKQAVDGDTGQVGPGLATRFGYALGAYVVRIEEIDPEKKEMVIVRRLDQGFEKIRLKLPAVLTITDELNKPRYANLPNLIRAIRYEPIVWTHKDLGLDPKKCGFFGSPTRVVSTNIPPARKGGDIISKNEDPEVAAEKLIEALKKFEAVRLVEALKPVLEGEKDE
>NC_009486.1|WP_004081904.1|1274792_1275809_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEKKIIFVLIEHHGGKAHPVSWELIGKARDLASKLENSEVWGVLLGEGLESVAKEAIQRGADKVLYVKNREFNTYVNYLYKKALVDMVRKYRPEIFLIGATLEGRELAGMVATELETGLTADCTGLDIIPDKKLLAMTRPTFGGNLMATIMCPDHRPQMATVRPGVMKELPPDPERTGEIIEEEYDLGTFDKLIEILETIPLQTQVNLEYAPVVVAGGKGVGGPEGFKKLKELADLLGGEVGASRAAVKAGWISPEHQVGQTGKTVRPVLYFACGISGAIQHVVGIKESEIIVAINIDEKAPIFDIADIGIVGDLHKVVPALTAKLRELLNKSGVKK
>NC_009486.1|WP_004081907.1|1273479_1274796_-|NAD(P)/FAD-dependent-oxidoreductase
MKIEFDVVVVGAGPSGLSCAYVLAKNGLKVAVVEKGEYPGSKNVMGGVLYVHPLKEIMPDFLEKAANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDRWFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEGVNPILTMKAGLRKEDLKPHMVAVAVKEVISVPEDVVNRVFGVEGNDGATIELLGSWSEGMFGMGFLYANRSSVSLGCGVLLEDLRKKKIKPYQLLENLKNHPVISDMLGEYRNNTMEYLAHLIPEGGYYAMPKVYGDRVLVCGDAAMLVNSIHREGSNHAITSGRLAAETLLEAFEKGDFSEKILKNYYLRLKESFILKDLEKYKDLMPTMEKNHQFVEIYPDLANDALKRFLQVDGTPKWDVQKQIADMVLSRRSLIGISLDLLRFWRAVR
>NC_009486.1|WP_011943758.1|1273194_1273473_-|ferredoxin-family-protein
MRIEDKLYLNRYRTDEENPHLKIKDESICAEKCPDRPCVSCCPADVYEWTESGMEVKFEGCLECGTCRIVCPFGNIEWKYPRGNYGVLYKFG
>NC_009486.1|WP_008194733.1|1272843_1273185_-|hypothetical-protein
MYVKIDRKKLPCVETEGTVLCTTCGNSYQIEPRQKLHSIIVTTCPHCGHQNINVVTNSVKFIEEVLSKIDRLRKDLMELKKSLEIEMQQNGFVDNYPEVFKADDEKQAEPKLL
>NC_009486.1|WP_004081884.1|1282078_1283056_+|aspartate-semialdehyde-dehydrogenase
MKVGVVGATGEVGRTMVKVLEEFNVPVTELRLFASERSVGKEIEFKGEKFKVELLTEESMKWKCDYFLFSAGASVSRKFAPIAAENGVTVIDNSSAFRMEKEIPLVVPEVNAYLLKGYTGIIANPNCSTIQMILSIYKLHEVYGIEEIFVSTYQSVSGAGHKGIEELLAQERGENVMKVFPKPIHRNVIPLIGDIQENLFSQEEMKMVNETRKILNDYSIRVYPTTVRVPVLYGHSEAIMVRLKKPYESLEKVREVIASGEDVVVTDDLITPVDVAGKNETYVCRLRATDERSILFWNVADNIRVGAATNAVRILLKHAEMNGKV
>NC_009486.1|WP_011943765.1|1283060_1283771_+|diaminopimelate-epimerase
MCYSANGNTFLIVDNTQKRIPEEKKPDFVRENVGDLDGVIFVELVDGKYFMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPGVSEKKEMKVDDYEGYFVVVGVPHFVMEVKGIDELDVEKLGRDLRYKTGANVDFYEVLPDRLKVRTYERGVERETKACGTGVTSVFAVYRDKTGAKEVKIQVPGGTLFLKEENGEIFLRGDVKRCSEE
>NC_009486.1|WP_011943766.1|1283755_1284640_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKALFAETNPIPVKAALNLMGFIENELRLPLVPASEKTMELLRNVLKESGLL
>NC_009486.1|WP_011943767.1|1284636_1285287_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGIEELDSPDVVVDFSSPEALPKTVELCKKYRAGLVLGTTALKEEHFQMLRDLSREVPVVQAYNFSIGINVLKRFLSELARVLKDWDVEIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIFGGE
>NC_009486.1|WP_011943768.1|1285288_1285990_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MDAREIIEMIAKAKKKTPIVAYIKGDLAGIDFSSFKFFGDEKFGILFGEYEDFKKLLEEHKEKIEDYHLEVKARNSALPLADITKYKARIEPGAIIRDMVEIGEGAVIMMGAVINVGAVIGEGTMIDMNAVIGGRAIIGKKCHIGAGAVIAGVIEPPSAKPVVIEDEVVVGANAVILEGVTVGKGAVVAAGAVVTKDVPPYTVVAGVPARVIKQIDERTKEKTKIVDELRNLE
>NC_009486.1|WP_011943769.1|1286005_1287211_+|aspartate-kinase
MNVVVQKYGGSSVATPERIKNVAQRIKKKVDEGYKVVVVVSAMGKTTDNLIKLAKEISPKPDSRELDMLLATGEQVSAALLSMALKDLGIKAKSLNAFQVKIKTTSHHTSARIVDIDDSVIWENLKDYDVLVVTGFQGVNEHGDLTTLGRGGSDTSAVALAAKLRVPCEIYSDVDGIYTCDPRVHPRAKKLAYITYDEALELTALGAKVLHSRSVEIAKKYGIPIYCASSFTEEEGTMVVERLPEWLEEPVVTGATISHGQIKVSISFLPKDVKYITAIFEEVGKKALNVDMISLVPSNGKIFLSFTILEDHKEDLDEALKEALRDVEGWKSTYEGGFAKLSIVGVGMRTSPGVAARFFEALERAGVTPELVTTSEIKISCLVPEEKAEEALKSVIEEFEL
>NC_009486.1|WP_011943770.1|1287220_1288381_+|diaminopimelate-decarboxylase
MDILWKVAEIHGTPAYVYFEETLRKRARLVKEVFEGVNLLPTFAVKANNNPVLLRILREEGFGMDVVTKGELFAAKLAGVPSHSVVWNGNGKSVDQMKHFLREGVRIINVDSFEEMEIWKELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDLFMERFGSMNVKGLHVHIGSQITQVEPFVEAFDKVVRASERFGFEEINIGGGWGINYSGEELDLSSYREKVVPALKRFKRVIVEIGRYIVAPSGYLLLRVVLVKKRSNKTFVVVDGGMNTLIRPALYSAYHRVFVLGKQGKEVRADVVGPLCESGDVIAYDRELPEVEPGDIIVVENAGAYGYTMSNNYNSTVRPAEVLVGEGGEISLIRRRETEMDIFKDVVM
>NC_009486.1|WP_011943771.1|1288381_1289455_+|amidohydrolase
MNEIELRHILHMNPEPSFREYRTKEILRKAVSDIGYEKIIEVAGTGLVIEKKETEDPYVVLRADMDALPIKEETGWEFASRNDYMHACGHDFHMSVLYGAMKRLKNVKKNFLFVFQPAEETGGGAEEVVNFLRDRYEIKAAVGFHVTDEYDAGTVASRPGVLFASATEFDVYFKGVPAHVAFAEKGKNALKAAVSFLNWLYNKKWNALVGVGKISGGRARNIVPDEVKLEGTIRSEALRITEEVISDMVKQLGELKEKTGVDFAVERGSVYPEVRVDQNLFETLRETCQRLGFSFVECEMKWTGEDFGYFSQIFPSLSFWFGVGEGERFGLHHPRFLPNDRYIPMAADLLTGLAMVV
>NC_009486.1|WP_011943772.1|1289469_1289880_+|transcriptional-repressor
MTTEEIIERLKSKKVKLTTQRMEIIKFVSEMKEGHFEAKELFAILSKKVPSLSIATLYSVLYLLTDFGVVYAFSDGQKTVFDFNPEPHGHFVCKECGKIEDVEIRELKLGEIKGKREKIELVIKGVCEECLKKVKD
>NC_009486.1|WP_048810880.1|1289876_1290269_+|hypothetical-protein
MKYLAQLFSLLLVIIGILGLVVWAGLYFLAPYIEGFVGIKLPENISNVLLGCFLPILGSGVLLNFYISSGIKWLVVFGFVVLSVSFVSEIYGLYILRGIFLKIAPAYLIFLLFTMVSLAYFLTIIRRDED

Crispr_ID: NC_009486_9

• CRISPR_ID: NC_009486_9
• CRISPR_location: 1372310-1372743
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 6 spacers

Consensus repeat of NC_009486_9

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_009486_9

>9.1|1372340|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
TTTACACCTCTCACGACATCATAACCGCTTTCGCAG
>9.2|1372406|43|NC_009486|PILER-CR,CRISPRCasFinder,CRT
TATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCAT
>9.3|1372479|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
AAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCG
>9.4|1372545|37|NC_009486|PILER-CR,CRISPRCasFinder,CRT
GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
>9.5|1372612|36|NC_009486|PILER-CR,CRISPRCasFinder,CRT
CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
>9.6|1372678|36|NC_009486|CRISPRCasFinder,CRT
ATTCCGACGCCGGAGACATACCAATCGTGGTACATC

CRISPR arrays and Neighbor proteins around NC_009486_9

CRISPR arrays

The CRISPR arrays of NC_009486_9

>merge|NC_009486|9|1372310-1372743|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACTTTACACCTCTCACGACATCATAACCGCTTTCGCAGGTTTCAATAATTCCTTAGAGGTATGGAAACTATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCATGTTTCAATAATTCCTTAGAGGTATGGAAACAAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCGGTTTCAATAATTCCTTAGAGGTATGGAAACGAATCAACAACAATTTCAAGCATTTTGATATCCGAGAGTTTCAATAATTCCTTAGAGGTATGGAAACCTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCGGTTTCAATAATTCCTTAGAGGTATGGAAACATTCCGACGCCGGAGACATACCAATCGTGGTACATCGTTTCAATACATCCTTAGAAGCACAAAAAA

>NC_009486|9|7|1372310-1372677|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTACACCTCTCACGACATCATAACCGCTTTCGCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_009486|9|9|1372310-1372743|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTACACCTCTCACGACATCATAACCGCTTTCGCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

>NC_009486|9|7|1372310-1372743|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTACACCTCTCACGACATCATAACCGCTTTCGCAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TATTTCTTTCCCGATCGTTCGAAAAGTGTCTAAGTGTTTCCAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGTGTTTTTTATACACTTCTCCTGCAAACTTCTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009486.1|WP_011943859.1|1378421_1379234_+|phosphatidate-cytidylyltransferase	unknown	unknown	gnl|CDD|366491
NC_009486.1|WP_011943847.1|1366462_1367188_+|nucleotidyltransferase	unknown	unknown	gnl|CDD|224134
NC_009486.1|WP_011943849.1|1367831_1368563_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223473
NC_009486.1|WP_148186811.1|1374753_1374906_+|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943857.1|1377173_1377731_+|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NC_009486.1|WP_011943860.1|1379230_1381822_+|alanine--tRNA-ligase	unknown	unknown	gnl|CDD|234701
NC_009486.1|WP_011943853.1|1372855_1373626_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|130314
NC_009486.1|WP_011943843.1|1362094_1363234_-|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272
NC_009486.1|WP_012896473.1|1364778_1365006_-|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl|CDD|224817
NC_009486.1|WP_011943856.1|1375812_1376967_-|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl|CDD|223153
NC_009486.1|WP_011943850.1|1368559_1369513_+|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl|CDD|223791
NC_009486.1|WP_011943852.1|1370441_1371740_+|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl|CDD|224536
NC_009486.1|WP_048810883.1|1374886_1375807_-|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl|CDD|240628
NC_009486.1|WP_011943844.1|1363220_1364786_-|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|226972
NC_009486.1|WP_011943848.1|1367181_1367799_+|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl|CDD|223632
NC_009486.1|WP_011943861.1|1381828_1382881_+|hypothetical-protein	unknown	unknown	unknown
NC_009486.1|WP_011943846.1|1365273_1366422_+|inositol-3-phosphate-synthase	unknown	unknown	gnl|CDD|224180
NC_009486.1|WP_011943851.1|1369669_1370440_+|inositol-monophosphatase	unknown	unknown	gnl|CDD|223559
NC_009486.1|WP_011943854.1|1373630_1374614_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213232
NC_009486.1|WP_011943858.1|1377727_1378429_+|isoprenyl-transferase	unknown	unknown	gnl|CDD|173302

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009486.1|WP_011943859.1|1378421_1379234_+|phosphatidate-cytidylyltransferase	gnl|CDD|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.15004e-63
NC_009486.1|WP_011943847.1|1366462_1367188_+|nucleotidyltransferase	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.38534e-35
NC_009486.1|WP_011943849.1|1367831_1368563_+|ABC-transporter-ATP-binding-protein	gnl|CDD|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.72095e-98
NC_009486.1|WP_011943857.1|1377173_1377731_+|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.01197e-90
NC_009486.1|WP_011943860.1|1379230_1381822_+|alanine--tRNA-ligase	gnl|CDD|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NC_009486.1|WP_011943853.1|1372855_1373626_-|ABC-transporter-permease	gnl|CDD|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.06111e-86
NC_009486.1|WP_011943843.1|1362094_1363234_-|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.37967e-08
NC_009486.1|WP_012896473.1|1364778_1365006_-|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl|CDD|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	2.00028e-23
NC_009486.1|WP_011943856.1|1375812_1376967_-|alanine--glyoxylate-aminotransferase-family-protein	gnl|CDD|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	0
NC_009486.1|WP_011943850.1|1368559_1369513_+|SufD-family-Fe-S-cluster-assembly-protein	gnl|CDD|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	2.15527e-67
NC_009486.1|WP_011943852.1|1370441_1371740_+|glycoside-hydrolase-family-32-protein	gnl|CDD|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	7.10731e-167
NC_009486.1|WP_048810883.1|1374886_1375807_-|D-2-hydroxyacid-dehydrogenase	gnl|CDD|240628	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains. Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	1.13534e-157
NC_009486.1|WP_011943844.1|1363220_1364786_-|4Fe-4S-binding-protein	gnl|CDD|226972	COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only].	2.23416e-97
NC_009486.1|WP_011943848.1|1367181_1367799_+|CDP-alcohol-phosphatidyltransferase-family-protein	gnl|CDD|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	8.85793e-17
NC_009486.1|WP_011943846.1|1365273_1366422_+|inositol-3-phosphate-synthase	gnl|CDD|224180	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism].	2.15994e-156
NC_009486.1|WP_011943851.1|1369669_1370440_+|inositol-monophosphatase	gnl|CDD|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	3.50136e-89
NC_009486.1|WP_011943854.1|1373630_1374614_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213232	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein. DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.53206e-149
NC_009486.1|WP_011943858.1|1377727_1378429_+|isoprenyl-transferase	gnl|CDD|173302	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional.	5.44356e-159

Protein sequences

>NC_009486.1|WP_011943852.1|1370441_1371740_+|glycoside-hydrolase-family-32-protein
MFKPNYHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWKHLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPAHNKGEKETQCVAMSENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGKWRMVLGSGKDEKIGRVLLYTSDDLFHWKYEGVIFEDGTTKEIECPDLVRIGEKDILIYSITSTNSVLFSMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENNELKVKPVDELLALRKRKVFETAKSGTFSLDVEKNSYEIVCEFSGEIELRMGNESEEVVITKSRDELIVDTTRSGVSGGEVRKATVEDEATNRIRAFLDSCSVEIFFNDSIAFSFRIHPEKVYNVLTVKSNQVKFEVFELENIWL
>NC_009486.1|WP_011943851.1|1369669_1370440_+|inositol-monophosphatase
MDRLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKSFPDENIMAEEGIFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKMGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGLIHDEVLKVVNEVVEEIGGK
>NC_009486.1|WP_011943850.1|1368559_1369513_+|SufD-family-Fe-S-cluster-assembly-protein
MIVKDYRKEFETLAKAYEKAGGDVSKFLDRRIASIIISGDKVIGLNGVEGVELTPHRIENGVQVDMRIKEGVVEYPVHVCTGYLEKKGLQRVVFNIRLEKNAKAIFVAHCVFPWTEDFTHDALMNVELEEGAWMEYHDEHMHSETGSINLITRSIARVGEGAVYRNTFTLVKTRIGTLRVFMDASLEKDAVGELYTKVKAIEDDDVEVKEILRLNGMGARGLAKTNAVAIDRAKVSVVNEVYGNAPHTRGHVECLEIAKGDGVDVRALPVLVVKNDSSELTHEASIGRVNAKQLETLMAKGLTEEEATEMIIKGILT
>NC_009486.1|WP_011943849.1|1367831_1368563_+|ABC-transporter-ATP-binding-protein
MLELIDVWYEVEGKAILKGINARFEKQRVYSILGTNGAGKSTLAYLIMGLEGYRPTRGKILLDGEDITDLSVTERAKRGITLMWQEPARFTGIKIRDYLTLGGRRKVSKEELERVLELVGLNPALYLERNVDEKLSGGERKRVELASILLMKPRYTILDEPDSGIDIMSLEMIEKVLSELVNAGGSVILVTHREEIALESDYAFLICHGSILKEGNPSEIVQFYKNSCDRCDHPNEPSGEMIV
>NC_009486.1|WP_011943848.1|1367181_1367799_+|CDP-alcohol-phosphatidyltransferase-family-protein
MLRKSTDGWISSLINRRFSSRITNLILEKNWQITPNQMSFISFLVGVLAFPFYLLKVPWIAGILVQVSSVLDGVDGELARARNVSSNWGAFFDTMLDRFVDILAVLGLSLYGYLKDGPSLSLLFWSVLAVSGSLMVSYLHSVGKVFGTHPALVGKLSGFASRDVRLFVVFVFSLFGMYLPALVVISILSYVYTTGKFVELLVLNR
>NC_009486.1|WP_011943847.1|1366462_1367188_+|nucleotidyltransferase
MREAVVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLGVEGIVVENKKVELGNAYSFFLSEPYVESEKFFLSCGDSLFPPEALKSAFSEDEFHIKLGVSKRSDLIDPEEASKVLVNEDRIVKIGKRIDEYNYFDTGVFVMTKKVYSLKESFSWTEEISLYHVLQKAVDTGMLVKVFDFGNALWTEIDSPEDLNEKVYELMKKIKEGVAC
>NC_009486.1|WP_011943846.1|1365273_1366422_+|inositol-3-phosphate-synthase
MVKVLILGQGYVASTFVAGLEKLRKGEIEPYGVPLARELPIDFKDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFIPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENSLVVFGDDGATGATPFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILGYDAPHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEKNIPRIIAYEKMRIWAGLKPKWL
>NC_009486.1|WP_012896473.1|1364778_1365006_-|NAD(P)H-dependent-oxidoreductase-subunit-E
MIVRVCMGSSCHLKGSYEVVRRFQELQKKYNFKLYGSLCFGNCSQGVCVEIDGQLFSRVTPENAEEILKRVLQNG
>NC_009486.1|WP_011943844.1|1363220_1364786_-|4Fe-4S-binding-protein
MAELIFSRETDCRYCYKCLRNCPVKAISFKSGKSTVLEEECVFCGLCLDICPQNARSYRKDVGRFLSLSRPFLVSIAPSFFAYFENPLRVIGILKEMGAVVVQETAVGAEIVSRRYEEVFEKHPGPLITTACPVVVNLAEKHFPNVLKYFAPVDSPLMAHAKFLKTRYGDFPIVFVGPCIAKKSESDLVDVALTFEELEEILEEREGKEALPDGPYPDRARFYPTTDGIGYTVSVPWEKKLVVEGIENLMRVFSRIDEYKSVFIEASACYGSCLNGPVMKKKSNGKERLLEWQKKLPKEPKVNHLKIDTFRSYRNKSRNVEVPEEEIKKVLVSIGKDDPSKELNCGACGYDSCREKARAVVLGKAEKEMCFVYLLDLVKSSSYRVVEESPNAVFVLKDEKVIYRNRVAGELIQKDPGILECAKGSVGETLNIEGKRFFFVKEFSLEDGEEVIMLVDITQEKLKDEELDKVKKETLRKVEEMLNKQMRIAQEIAGILGESIAETKSSFMELKRFMEGENADL
>NC_009486.1|WP_011943843.1|1362094_1363234_-|SpoIIE-family-protein-phosphatase
MLTCDVFFASKNKKGEEVCGDSIKVKRESEKIVVSISDGLGSGIKASILSTLTSTIASTMLIKGLPVADVFRTILATLPICRVRKISYSNLCSVVCDFKNNTCTVVEYEFPVVMLFKGERRVFPEKLELEIEGKKVFVWQFQPEAGTLLFLATDGLSQAGMGTDLFPLGFGVENIEKEMKHLLKNHVSPENIVRHFVKLAEKLDQEVRGDDTLVACLNFREKRILNLFVGPPEDRKKDEEYVRTFLSLPGKKIVCGGTTGQIFERVTGKKVEIDLYTLSENSPPVGYMEGIDLMTEGIVTLTQVFRYLEGQSDELGYGAKFIVKSLLEADEINFFVGRAINPAHQNPLFSHDISLKFRLVKDIAQILRERGKIVNVQYC
>NC_009486.1|WP_011943853.1|1372855_1373626_-|ABC-transporter-permease
MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLTYLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQGLIILVFNYFLAESLKISGLLPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMPLVFLSGAMYPIDSMPSWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILMLVGLILAMESFERARIS
>NC_009486.1|WP_011943854.1|1373630_1374614_-|ATP-binding-cassette-domain-containing-protein
MEDIIVVEDLVKKFGNFEAVKGVSFSVKKGEVFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGYDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGRIYGYGGEKLKKRILELLEFVELLDFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRSHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGSPNELKRMVGKEIIYVRFSEAVECLEGEFIESCKKLPDGRLELNVEDSGRAIPKIFELAQQKGLKIEEITYHKPTLNDVFLHLTGRELREEGPENSFKTMARMRMRMRR
>NC_009486.1|WP_148186811.1|1374753_1374906_+|hypothetical-protein
MERVRDFFILLFCVLLFVYEFLALNVRIMFRSVKKKKSRETTPGFRFPVP
>NC_009486.1|WP_048810883.1|1374886_1375807_-|D-2-hydroxyacid-dehydrogenase
MARYRVHVNDPLDKEATQLLMSKDELEVTSEHLEKDELMKIIPEIDVLVVRSATKVTADIIEAGKNLKIIARAGIGLDNIDVQKAKEKGIKILNTPGASAPSVAELAMGLMLACARHIARATISLKEGKWEKKALNGKELLGKTLGLIGFGNIGQEVAKRALAFGMKIIAYDPAKPATDLPVEYVDLDTLFRESDFISLHVPLTESTRHIINRESIAKMKDGVIIVNTARGGTIDEEALYEALVSGKVYAAGLDVFEVEPPTDEIRRKLLNLDNVVATPHIGASTDEAQNRVGTELVEKIFKELGI
>NC_009486.1|WP_011943856.1|1375812_1376967_-|alanine--glyoxylate-aminotransferase-family-protein
MGKFLKKHYIMAPGPTPVPNDILTEGAKETIHHRTPQFISIMEETLENAKYVFQTKNNVYAFASTGTGAMEAAVANLVSPGDKAIVVVAGKFGERWKELCQAYGADIVEIALEWGDAVTPEQIEEALNKNPDAKVVFTTYSETSTGTVIDLEGIARVTKEKDVVLVTDAVSALGAEPLKMDEWGVDVVVTGSQKGLMLPPGLALISLNDKAWELVEKSRSPRYYFDLRAYKKSYPDNPYTPAVNMIYMLRKALQMIKEEGIENVWERHRILGDATRAAVKALGLELLSKRPGNVVTAVKVPEGIDGKQIPKIMRDKYGVSIAGGQGKLKGKIFRIAHLGYMSPFDTITAISALEFTLKELGYEFELGAGVKAAEAVFAKEFIGE
>NC_009486.1|WP_011943857.1|1377173_1377731_+|ribosome-recycling-factor
MVNPIIKEAKEKMKKTLERIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF
>NC_009486.1|WP_011943858.1|1377727_1378429_+|isoprenyl-transferase
MRIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAKVLHNTVKWSLEMGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRKERVRVRILGRKEGLSEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKKIELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKPWPDFTKRDFLRAIESYSKRERRFGGLING
>NC_009486.1|WP_011943859.1|1378421_1379234_+|phosphatidate-cytidylyltransferase
MDDLKTRVITASIVAPFVVLCFVSYESLIGLVSAIVILAGYEFITLEMKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLIADKDPSQVFKTIASFSIALIYITFFLSFFLPIYRNFGAANALLVLTSTWVFDSFAYFAGLKFGKTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVINFRTFLPFAATVAVMDTFGDIFESALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR
>NC_009486.1|WP_011943860.1|1379230_1381822_+|alanine--tRNA-ligase
MRYMTSEEIREAFLKFFEKKGHKILPSASLIPDDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQKCLRTVDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSNEGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAEESRFLKTLEQGMKVFDEIVEKKGRIDSEDAFKLYDTYGLPLELTLEIAREKGVEVDVKEFNKYMEEQQRKSRVALGDVEFARRYEYLEELPKDFRTEFTGYEKLEDEGEVVLIAKNEKAVEDATEDAVEVVFSKTPFYAEKGGQVSDTGTVEWEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVRYTSYEEAVKSGVVALFTEKYGDVVRVVEVPGVSKELCGGTHVSNTGQIGLFKIISEESVSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELEKKLSQGRISEEKIAMKQLEDGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVILLSKFEDKVSLVVKVSENLLDKYDASSIARNIAKELGGSGGGRRNFAQAGGRHPEKIRGVLERLEEFLR
>NC_009486.1|WP_011943861.1|1381828_1382881_+|hypothetical-protein
MELVVDAHELKEWVYLLDKLVGTTEPTARFLSFFYRDGLWVSASDNCAKVEIFLGEIPRFEGSRIVSLDLVKYFLSDVRVSDVRITVLQERLVLRAGNEVLDVRCKTGEIPPGDGEEEFLCTLTKREFEGALNFASSNLDEGEFLILLFEEKDVLMFGSSAGIMTLAQISTIPKNPFSTKIPYVTVRHIFKAFQRLDVQTLDFYEKSGKLVVKYPHFVMEVCGDEVKEGEIKKLRALLEEKTVERIEAKKQVLAKLVRKASVLSRGDYATISRRGESLKVQVKRKNLSYTAELFVESGRDFVVVFPSKKLRSALARMDTERIFLEITERFLKISNFSGTRVIYLELEEFF

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009486_2	2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR	536950-536983	34	NZ_CP027063	Klebsiella variicola strain WCHKV030666 plasmid pVir_030666, complete sequence	206315-206348	9	0.735
NC_009486_2	2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR	536950-536983	34	NZ_CP031790	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence	173170-173203	9	0.735
NC_009486_2	2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR	536950-536983	34	NZ_CP019161	Klebsiella pneumoniae strain GN-2 plasmid pGN-2, complete sequence	153432-153465	9	0.735
NC_009486_4	4.6|940394|37|NC_009486|CRISPRCasFinder	940394-940430	37	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	61749-61785	9	0.757
NC_009486_4	4.6|940394|37|NC_009486|CRISPRCasFinder	940394-940430	37	NZ_CP011157	Bacillus cereus strain HN001 plasmid pRML02, complete sequence	124483-124519	9	0.757
NC_009486_4	4.42|940395|37|NC_009486|PILER-CR	940395-940431	37	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	61749-61785	9	0.757
NC_009486_4	4.42|940395|37|NC_009486|PILER-CR	940395-940431	37	NZ_CP011157	Bacillus cereus strain HN001 plasmid pRML02, complete sequence	124483-124519	9	0.757
NC_009486_5	5.24|1109031|37|NC_009486|CRT,CRISPRCasFinder	1109031-1109067	37	NZ_CP043555	Vibrio cholerae strain RFB16 plasmid unnamed, complete sequence	42563-42599	9	0.757
NC_009486_5	5.63|1109032|37|NC_009486|PILER-CR	1109032-1109068	37	NZ_CP043555	Vibrio cholerae strain RFB16 plasmid unnamed, complete sequence	42563-42599	9	0.757

1. spacer 2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027063 (Klebsiella variicola strain WCHKV030666 plasmid pVir_030666, complete sequence) position: , mismatch: 9, identity: 0.735

cttttatcatacctcatttttccggattgtcaat	CRISPR spacer
tctttatcaaacctgatttttccggagggacagg	Protospacer
..******* **** ***********  * **. 

2. spacer 2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031790 (Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cttttatcatacctcatttttccggattgtcaat	CRISPR spacer
tctttatcaaacctgatttttccggagggacagg	Protospacer
..******* **** ***********  * **. 

3. spacer 2.9|536950|34|NC_009486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019161 (Klebsiella pneumoniae strain GN-2 plasmid pGN-2, complete sequence) position: , mismatch: 9, identity: 0.735

cttttatcatacctcatttttccggattgtcaat	CRISPR spacer
tctttatcaaacctgatttttccggagggacagg	Protospacer
..******* **** ***********  * **. 

4. spacer 4.6|940394|37|NC_009486|CRISPRCasFinder matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.757

aagagaaattagaagaagaagcgaaggcgtttttaga	CRISPR spacer
aagagaaattagaagaagaaatgaagattatgaaaga	Protospacer
********************..****..  *   ***

5. spacer 4.6|940394|37|NC_009486|CRISPRCasFinder matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 9, identity: 0.757

aagagaaattagaagaagaagcgaaggcgtttttaga	CRISPR spacer
aagagaaattagaagaagaaatgaagattatgaaaga	Protospacer
********************..****..  *   ***

6. spacer 4.42|940395|37|NC_009486|PILER-CR matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.757

aagagaaattagaagaagaagcgaaggcgtttttaga	CRISPR spacer
aagagaaattagaagaagaaatgaagattatgaaaga	Protospacer
********************..****..  *   ***

7. spacer 4.42|940395|37|NC_009486|PILER-CR matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 9, identity: 0.757

aagagaaattagaagaagaagcgaaggcgtttttaga	CRISPR spacer
aagagaaattagaagaagaaatgaagattatgaaaga	Protospacer
********************..****..  *   ***

8. spacer 5.24|1109031|37|NC_009486|CRT,CRISPRCasFinder matches to NZ_CP043555 (Vibrio cholerae strain RFB16 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

-----aactactactcttttgtcaccaataaaaatactaaaa	CRISPR spacer
ttctcaacca-----gttttgtcaccaagagaaatactaaaa	Protospacer
     ***.*      ************ *.***********

9. spacer 5.63|1109032|37|NC_009486|PILER-CR matches to NZ_CP043555 (Vibrio cholerae strain RFB16 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

-----aactactactcttttgtcaccaataaaaatactaaaa	CRISPR spacer
ttctcaacca-----gttttgtcaccaagagaaatactaaaa	Protospacer
     ***.*      ************ *.***********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1136277 : 1143846	9	Staphylococcus_phage(42.86%)	transposase,protease	NA
DBSCAN-SWA_2	1152805 : 1160418	10	Bacillus_phage(33.33%)	NA	NA
DBSCAN-SWA_3	1497429 : 1515350	16	Bacillus_phage(25.0%)	NA	NA
DBSCAN-SWA_4	1636948 : 1645667	8	Powai_lake_megavirus(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_009486|1136277:1143846|DBSCAN-SWA
AGTGCGAAAATACGTGTGGATAGTCGTTTTCATCGTGCTGGGAATCTACTTTCTCACCGGTGTGTATCAGGTAGGACCCTCCGAAGTCGCCCTCCTCAAGACTTTTGGAAGATTCACCTCGGTCGTTCCTTCAGGAATCCACTACCACCTGCCGTATCCGATTCAGTCTCATGTGACCGTCGACGTCACAACTGTGAGAAAGATCGAAATAGGATTCAGAAGCATTCAACGAGGGGAGAGGATCTCTTACCAGTCGGTTCCTCAAGAAGCCATAATGATCACAGGAGACAACAACCTCGTGAGTGTGGAAGCGGTGGTTCAGTACAGGGTGAAAGACCCCGTCGCTTACGCCTTCAACATCACAGAAGCGGATTCCATCGTGAGATTCACAACAGAATCTGTTCTTCGTGAGAAGGTAGCGATGAGAAGCATCGACGACGTTCTCACCTCAGGAAGAGATGAAATAGGATTCAAAACTGCCCAAATGCTCCAGGAGATTCTCGATTCCTACAACTGCGGTATAAAGGTGGAAAACGTTTATCTCCAGGAAGTGGTCCCGCCAGATCCCGTTGTTGACGCCTTCGACGATGTGAACAACGCTCGTCAGGACAAAGAACGTCTCATAAACGAGGCAAGAAAATACGCCAACGACGTTGTTCCAAAAGCCCAGGGACAGGCACAAGAGATACTGAGACAGGCAGAGGCCTACGCTCAGGAAGTTTATCTGAAAGCACTCGGCGAAGCGAAAAGATTCGAAGAGGTGCTGGAAGAATACTCAAAGGCTCCTGATATCACGAGAAAACGAATGCTCCTCGACGCTCTCCAATCTTTGCTTGAAAAATCCGAAAACAAGGTTTTCTTCGTGGGAAACGGTGATTCTCTGAACATTCTCAACATTTCCGACCTTCTGAAGGGGATGGGAAAATGAAAATCTGGATGATTTCTCTTCTGATCATTCTGATCGTGGTGGGTGCGATCCTTCTTTTCTCTTCTTTCTACGTCCTGGATCAGACACAGCAAGCGGTGGTTCTGAGGTTCGGAAAGATCGTCGCGGTGGAAACAGAACCTGGGCTTCACTTCAAGCAGCCGTTCGTTGATAATGTGGTGAGATTCGATAAAAGAATCCTCCTCTACGATATAGAACCAGAAAAGATCATAGCCGCCGACAAGAAAACGCTCGTGATAGACACGTACGTTCTCTGGAGGATAAAAGATGCGGAAGCGTTCATAAAATCACTGAAGAGCGTGAAGCTCGCTCTTCCAAGAATCGACGATGTGGTTTACTCACACGTGAGGAACATCTTCGCAAAAGCGAACTTCGACGAGATCATCTCCGAGAAGAGAGAAGACCTTTTGAGGGAAGTCACGGCTCTTTCAAGAGAAGATCTGAAGGACTTCGGCATAGAAGTGGTCGATGTGAGGGTGAAGCACGCCGACCTCCCCGCTGAGAACGAAAAGGCCGTGTACGAAAGAATGAAAGCGGAAAGATACAGCATCGCTGCACAGATCAGGGCTGAAGGTGAGAAAGAGGCAAGAAAGATACGTGCGGAAGCCGACAAAACAGCGAAGGTTCTGATCGCGGAAGCTCAAAGCAAAGCAGAGCAAATCAAGGGAACCGGAGAAGCAAGCGCGGTGAAGATCTACGCGGAGGTGTTTTCAAAAGACAAGGACTTCTACGAATTCTGGAGAACGATGGAGGTTTACAGATCCATCGAGAAAGGAATTCTCATAATTGGAGACGAACTCGATGCACTGAAATACCTCAAAACGAAGTAAGGGAGAGTTCCCTCACTTCATTTTCAGAAAGTTACTCACGCTGAAGAGCATTCTGAACATCCATATGTTGAACTTGTTTACCCTGTTCTTTCCGGGGCCGTAACCGAAATCTTTCACCGGTCTGAGAAATCTGTACCTCCCAGCGTTGTGAACGATGGGAATGAGCTCACCATTTTCGAGATAGAACTTCGAATCTTTCACGTAGAATTTTTCTCGGGCCGTTGAAGGAATGAAGTTGTACTTCGAAGGAAGTTCCACATGAGGGTTCTTGTAGATCACGTAGTTTCCAATGACAGTATCTCCACCCCAGACGTTTATGTTTTTCAGACGTCTCTCCATTGTTCTTGCGAGCTCGAGGAAACCTTCCCTTGGTGCTATTATCACACCCACGTTGAAGAGCTTTTTGTTTGAAAGAAAAGACTTTATCTCCTTTCCATTCACAAGGTCTTCTTCCTTCACCACGAGATCAATGGGTGGACTCAACTGCTCCACAACCGCTCGAAAAGCATCTCTGTGTTCCTCGAATAGGTGCGAGATGTCACTCTGGAAGATGATGTCTCCGCCATCACAAAACAGGATCTGATCGTACTCAGGATGATTCTCAAGAAAAATGGCAAGATTGATGAAACGCGTGTTGTTTATGAGTCCAGAACGCTCCACAGCCGGAAAGTTGATAACCTCTTTAGGAAGTCCTGTGAGACCGTAGTTTATGACGAGAACGTCCGTTTTGCTCAGATCCACATTTTCCTTCAGAGATCTGTACCAGTCGTTCACAAGAAAGTCCCTTATTCTGTCGTTACCTGCCGTTGCTATCAGATTCAAAAACATCCCTCCTGAGTCTCTTTCTGAGATTTGCCATTTCGATCGCTACCATCGCTGCTTCAAAACCTTTGTTTCCACTCTTTGCTCCGGCTCTGTTGAGGGCCTGTTCAAGGGTGTCCGTGGTGAGAACGCCGAAAACAATAGGAATATCAGAGGTCATGTTGAACTGCGCTACAGCCTTACCTATCTCGTTCGCCACCACGTTGAAGTGGTACGTCTCCCCTCTTATCACAGCACCGAGAACGATTATAGCATCGTGCACGTTGAGGTCGAGGAGTTTCTTGAGCGTGTATATCGCTTCCATACTTCCCGGAATTCTCACAACCGTTATGTTCTCGTCTGAGACACCGTGTCTTTTCAGCCCGTCGAGCGCCCCCTCGAGGAGTTTCGAAGTGACAAGGTCGTTGAACCTAGGAACGACTACGGCTATCTTCAACCCTTCTCCTCTGTAGTCTCCCTGGATAACCTTCATGAATTCACCTCCCCAAGGATCTCCTCAAGTTTGTGTCCGAGTTTTCTCATTTTTGTTGAAAGATAAAACCTGTTGTATGGTGTTACTCTCCCGTACAATCTTTTTGTTTCGATAACTTCGATTCCGTATTTTTCAAGACCAACCGTCTTTCTTTGGTTGTTGGTGAAGAGAAGAACCCTTTCGATGCCAAGGGCTTTCAAGATCTGCACCGCCGGTGCGTAATCTCTTTCGTCCTCAGAAAAACCAAGAACTCTGTTTGCCTCCACCGTGTCCAAACCTTTGTCCTGAAGAGAATAGGCTGCAATTTTGTTCGAAAGGCCGATTCCTCTCCCTTCCTGTCTCAAATAGATCAGGATACCTCCGTGAGCTGACATGTATCTGAGAAAATTCGCCAGCTGTGAACCGCAGTCACACCTCAAAGAAGAGAGAACATCCCCGGTCACGCATTCGGAGTGTATTCTCACAGCAACGGGATCTTCGAGGGGTTCCTTAACGATTGCGAAGTGTTCTTTGCCATCGAGGTGGTTTTCGAAAGAAACAACCTTGAAGACACCGAAATCCGTTGGAAGTGTTGCTTCTGCTTTTTTCTTCATGAGAAGCTTTCTCTTCACAAATTCACGCCAGACATCGTCCATCTCCAGAACGGGGAGGGAAAACCTCTTCGAAATTTGTAAAACATAATCCAGATTGTGAGAATTTCCCTTCTCATCCAGAATTTCCACGATCACCGCATAACGACTGAAACCTGCGAGTTCAGAAATTTCCAAAGATGCCTCCGTGTGTCCTTTTCGTCTCTGGAAACCGATTCCTCCGATCACTGTGACGTGGCCTGGGTACCTGAACTCATAGAAATATCTGCCCTCTGCCAGTTTTCTGCACGTTTCTGCCCTTTCTGACGCCGAAATCCCGGTGCCAGTGCCCCAGTCCACCGGGACAAAATAGTTCGCTCCGTAGTTCGAGGAAAGTTTTACGAACCCTCTTTTCAAAAGATCTTCTTCGTCGGCTGTAACACAGAAGAGTCCCTTCCCGTATGTGACGAAAAAATTCACAACGTCTTCGGTGATCAATTGAGCGGGAAAAACAAAATCCGCTTCGTTCTCTCTGTTTCTGTCGATCAAAACGACAGGTTTTCCTCCCTCAAAAGTCTCTCTCAGTTCTTCCACTGTCTATCACCCCTTTCAAGTAGCGAGCGATGATATCGATCTCGTAGTTAACGGGATCTCCGGGCACCAGATACTGGAGGTTCGTGTTCTCGAACGTGTGTGGGATCACCTGAACACTGAACGTGTCCAGAGAAGTTTCAACGACGGTGAGGCTGATACCGTTCAACGTGATAGAACCTTTTGGAACGATCGCCCATCTTTCCGACGGCATCGAAAAGAACATGAAATAGCTGTTTCCGCGCCTTTCCATTCCGACAAACCTGACGGTACCGTCCACATGGCCTGTTACCAGGTGTCCTTCAACTCTGCTGCCGAGAGCCAGAGATTTTTCAAGATTGTAAAAACGAGAAACGAAAAGATTGGTTCTCCTCCTCGTTTCCTCACCCACATCGAACCAGTACTCTTCTTCTGAAAGCCCGGAGACAGTCAGACACACACCGTTCACCGCTATACTCTCTCCCAGTTTCACTTCCCACGTTCTTTTGAAGAAGATCCTCTCTCCTCTGAGGTGCCCTCTTTCCACCTTCTGAACTATTCCCGTGAACACGGTCTCATCTCCACCAGAAACTCCGAATCGGAAAACTCCACGTTCACCACTTTGAACTTCGGAGGAACCGAAACATCTGACAGATAACCGGAGAAGACATCAAGCCCCTTTCCGAAAATCTTCGTCGAATAAAAACCAAAAACCACATCTGCGTGATCCAAAAATTCACTGAACACCTTCGATCCGCCTTCCACCAAGACAGAATCGATATCCCTTTCATACAGATTTCTCAATATACTCTCCACAGAACAATCGCTCAGGGCCTTCTCCACGTGTGGTGGATATTCCGCCTCTTCACTTTCTGTGAAAACGATCACCCGAGCGTTTTCTTCGAACACTCTGAACACTTTCCCACTCAAAACACCCTTTCTGTCGAGGATCACCCTCACAGGATTTCTGCCTTCTTTCAGTCTGCAGGTTAGCTGAGGATTGTCCTTCAAAACCGTTCCAGCACCGACGAGAACAGCAGAGTAGATGTTTCTCATCTCGTGAACCTTGAATCTGAGTTTGTCTGTGATCCACTTGGAATCTCCTCTGTGATCAGCTATTTTCCCATCTAAGGTGGACGCGTACTTCAGCGCAACGAACGGCCTTTTCTTTGTCACATAAGTGATGAAAAACTCACACAGCTTTTTCACCTCTTCTTCCAAAACACCTTCTATCACTTCAATACCGTGATTTCTGAATTTTTCCACACCGTTTCCCGAAACAGGATTTGGATCCCTTGTTCCAATCACAACGGTTTTTATTCCACTTTCTATGATCAGATCCGTGCATGGAGGTGTCTTTCCATGATGATCACAGGGTTCAAGGGTAACTATGAGAGTTGCACCTCGTAAATCTTCTCCTTTCTTTCTTGCACTTTCTATTGCCATCCTTTCAGCGTGCGGACCTCCAAAATAGGGATGAAAACCCTCCGCGATTATCCTGCCGTCTTTCACAACGACCGCACCAACTGGTGGGTTGGGATTCACCCTTCCAAGTCCTTTCTTTGCAAGCTCTATCGCTCTTTTCATGAAAGTTTCATACATACAACACCCTCCCTGTGTAAAAGAAAAGGGACCCTCTCGGGTCCCATATAATCTCCACATCACGCTCTCTCCCATCCGGACTTTCACCGTCGGCCCCGGAATTCCACCGGGTCAACCCTCCTGAGAGGGCTCGCGGGCTTTCACCGCCGGTCGGGAATTCCACCCTGCCCCGAGAGCGTTTCTTTTGTATTCAGTTTTCTCCATTCTATCAAGGATTTATTTCCAGAAGGTGAACAGATCTTTTAACTTCATCTGCCGATCACTCTGTTTTTTCCACGCTGTTTTGCCAGATAGAGGTTATCGTCTGCTTCTTTGAGAAGATCGTCTATTGTCTCATGATCTTTCATTTCGCAAACACCGATACTCACGGTTACATTCAAGCCGTTTTCAAAGACTTCTTTCTCGATCTTAGTCCTGATTCTCTCAGCGAGGCTCACCGCTTCGTTCAACTTCGTTTCAGGACAGAGGATCAAAAACTCTTCTCCACCCCACCTCGCAATCACTTGACCTCCTCCCAATCCCCTGAAGGGGATGGGATTCTTGGTGGCTCTCAGGCCACCTTCCATGGAGCCAAAGATGCTCCATGGCCACAGAGGTGTGGATGAAACCTCACACCTCTGACGGGGGCCAAGCCCGCTACTACCTGGCCTGTGCCAGGATACCTTTTCCAGATGTTGATTGCTCCAACTCCGTCCCTGTGATACTCAAAACCACAGGCTTTGCAGTGGTATCTTCTTCCGTTCGGATTGTTCTTTGCACCACAGTTAGGACACGTCTTGCTTGTATTCGCTTCTGAGATGAGTTTCACTTCGATTCCGAACTGCTCTGCTTTGTACCTTATCATCTCGATGAGTTTTCTGAACTGCCACTGGTGGATCTTCTGGTTCGCGTTGTCGCTGTAGTCTGCTCTTTCTCTGATCCCTGTGACGTCTCCTATCACGATGGTTCTGATTTGTTTTCTGAGGCACAGCCCGATGAAACTGCTTGTGATCTTGTGCATGATGTCGTTGATCTGGTTTCTGAGCCGTCTCAGGGCTCTTTTCTTTGCACTAACAAGCTTGTTGTACCTTCTTGATCCCTTCTTGCACTCTGCTATGGCAGACTGAAAACTTGCAAGGCGTTTGTTTCGATAGCGAAGAGTGCTGCTGAGGACTCCTCCGTGGTAGCTGATGACTTCTTTTCCATCAAAGCACGTGATGGGACGGAGCACTCCAAGGTCGGCCGCCATAACACCAGAGCCAGCATTCTTCTCTTCAATCTCCACCTCTATCGCAAGGTGGAGATAGTATCCATCTTCAAAGACAAGTCTTGCCTGTTTGATGCGAAGGGGAGGTTTGAGAGGTGTTTGTACAACAAATGGTTCTCGTTCTTTGCCCAAAGACAATCTCAGGGTACCGTCTGGCAGAAGTTTTACAGCGCTTTCTTTCCATATGAACGGCAGATAGCGTTTTTTCTTGTGGGGAGGTTTTGCATCTTGATTCTTTTTGGCTGCTTTGAAGTACCCTTTGAGGGCTTGAAAGTAGAGCTGAACAAATGCCTGCTTTGAATGGACGTGGATTTTGATGTTTTCTGCCCAGCGGAGGATGTATTTGTCTGCGGCAGGCCAGGACAGCCAGAAGCCTTTCTTTTGGTGTATCTTTCGCACAAGAGACATCGTTTTGTTGTAGATTCTTGCTGCTGTGCGGTTGAGTTCTTCGCACATTCGATTCAAATGTCCTGGTACGGCGAGTTTGTAGGTTCGTATCACACGTCCGGGCAT

Protein sequences of DBSCAN-SWA_1

>NC_009486|1136277:1143846|1137200_1138052_+|WP_004082369.1|protease|DBSCAN-SWA
MKIWMISLLIILIVVGAILLFSSFYVLDQTQQAVVLRFGKIVAVETEPGLHFKQPFVDNVVRFDKRILLYDIEPEKIIAADKKTLVIDTYVLWRIKDAEAFIKSLKSVKLALPRIDDVVYSHVRNIFAKANFDEIISEKREDLLREVTALSREDLKDFGIEVVDVRVKHADLPAENEKAVYERMKAERYSIAAQIRAEGEKEARKIRAEADKTAKVLIAEAQSKAEQIKGTGEASAVKIYAEVFSKDKDFYEFWRTMEVYRSIEKGILIIGDELDALKYLKTK
>NC_009486|1136277:1143846|1142335_1142653_-|WP_010865413.1|DBSCAN-SWA
MEGGLRATKNPIPFRGLGGGQVIARWGGEEFLILCPETKLNEAVSLAERIRTKIEKEVFENGLNVTVSIGVCEMKDHETIDDLLKEADDNLYLAKQRGKNRVIGR
>NC_009486|1136277:1143846|1136277_1137204_+|WP_004082368.1|protease|DBSCAN-SWA
MRKYVWIVVFIVLGIYFLTGVYQVGPSEVALLKTFGRFTSVVPSGIHYHLPYPIQSHVTVDVTTVRKIEIGFRSIQRGERISYQSVPQEAIMITGDNNLVSVEAVVQYRVKDPVAYAFNITEADSIVRFTTESVLREKVAMRSIDDVLTSGRDEIGFKTAQMLQEILDSYNCGIKVENVYLQEVVPPDPVVDAFDDVNNARQDKERLINEARKYANDVVPKAQGQAQEILRQAEAYAQEVYLKALGEAKRFEEVLEEYSKAPDITRKRMLLDALQSLLEKSENKVFFVGNGDSLNILNISDLLKGMGK
>NC_009486|1136277:1143846|1138848_1139346_-|WP_011943644.1|DBSCAN-SWA
MKVIQGDYRGEGLKIAVVVPRFNDLVTSKLLEGALDGLKRHGVSDENITVVRIPGSMEAIYTLKKLLDLNVHDAIIVLGAVIRGETYHFNVVANEIGKAVAQFNMTSDIPIVFGVLTTDTLEQALNRAGAKSGNKGFEAAMVAIEMANLRKRLRRDVFESDSNGR
>NC_009486|1136277:1143846|1140483_1141056_-|WP_048810872.1|DBSCAN-SWA
MFTGIVQKVERGHLRGERIFFKRTWEVKLGESIAVNGVCLTVSGLSEEEYWFDVGEETRRRTNLFVSRFYNLEKSLALGSRVEGHLVTGHVDGTVRFVGMERRGNSYFMFFSMPSERWAIVPKGSITLNGISLTVVETSLDTFSVQVIPHTFENTNLQYLVPGDPVNYEIDIIARYLKGVIDSGRTERDF
>NC_009486|1136277:1143846|1141040_1142087_-|WP_004082374.1|DBSCAN-SWA
MYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRPCSRE
>NC_009486|1136277:1143846|1138064_1138874_-|WP_004082370.1|DBSCAN-SWA
MNLIATAGNDRIRDFLVNDWYRSLKENVDLSKTDVLVINYGLTGLPKEVINFPAVERSGLINNTRFINLAIFLENHPEYDQILFCDGGDIIFQSDISHLFEEHRDAFRAVVEQLSPPIDLVVKEEDLVNGKEIKSFLSNKKLFNVGVIIAPREGFLELARTMERRLKNINVWGGDTVIGNYVIYKNPHVELPSKYNFIPSTAREKFYVKDSKFYLENGELIPIVHNAGRYRFLRPVKDFGYGPGKNRVNKFNIWMFRMLFSVSNFLKMK
>NC_009486|1136277:1143846|1142637_1143846_-|WP_011943647.1|transposase|DBSCAN-SWA
MPGRVIRTYKLAVPGHLNRMCEELNRTAARIYNKTMSLVRKIHQKKGFWLSWPAADKYILRWAENIKIHVHSKQAFVQLYFQALKGYFKAAKKNQDAKPPHKKKRYLPFIWKESAVKLLPDGTLRLSLGKEREPFVVQTPLKPPLRIKQARLVFEDGYYLHLAIEVEIEEKNAGSGVMAADLGVLRPITCFDGKEVISYHGGVLSSTLRYRNKRLASFQSAIAECKKGSRRYNKLVSAKKRALRRLRNQINDIMHKITSSFIGLCLRKQIRTIVIGDVTGIRERADYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEANTSKTCPNCGAKNNPNGRRYHCKACGFEYHRDGVGAINIWKRYPGTGQVVAGLAPVRGVRFHPHLCGHGASLAPWKVA
>NC_009486|1136277:1143846|1139342_1140509_-|WP_011943645.1|DBSCAN-SWA
MEELRETFEGGKPVVLIDRNRENEADFVFPAQLITEDVVNFFVTYGKGLFCVTADEEDLLKRGFVKLSSNYGANYFVPVDWGTGTGISASERAETCRKLAEGRYFYEFRYPGHVTVIGGIGFQRRKGHTEASLEISELAGFSRYAVIVEILDEKGNSHNLDYVLQISKRFSLPVLEMDDVWREFVKRKLLMKKKAEATLPTDFGVFKVVSFENHLDGKEHFAIVKEPLEDPVAVRIHSECVTGDVLSSLRCDCGSQLANFLRYMSAHGGILIYLRQEGRGIGLSNKIAAYSLQDKGLDTVEANRVLGFSEDERDYAPAVQILKALGIERVLLFTNNQRKTVGLEKYGIEVIETKRLYGRVTPYNRFYLSTKMRKLGHKLEEILGEVNS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004082368.1|1136277_1137204_+|protease	FtsH protease activity modulator HflK	S4VT23	Pandoravirus	2.3e-09	26.5
WP_004082369.1|1137200_1138052_+|protease	protease modulator HflC	NA	NA	NA	NA
WP_004082370.1|1138064_1138874_-	hypothetical protein	NA	NA	NA	NA
WP_011943644.1|1138848_1139346_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.3e-30	44.7
WP_011943645.1|1139342_1140509_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.8e-65	37.4
WP_048810872.1|1140483_1141056_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.1e-22	35.5
WP_004082374.1|1141040_1142087_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.5e-52	37.2
WP_010865413.1|1142335_1142653_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	7.7e-05	31.0
WP_011943647.1|1142637_1143846_-|transposase	transposase	A0A1C9EG34	Acidianus_two-tailed_virus	6.1e-10	27.6

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_009486|1152805:1160418|DBSCAN-SWA
GATGAAGATAACGCTGAATAACGTTTCTTTCAGATACAACGGAAACTACGTTTTGAAGGACGTGAACGCCGAGTTCGAAACGGGAAAGATCTACGTTGTGGTGGGGAGAAACGGCTCCGGGAAGACCACCCTTTTGAAGATCCTCGCGGGACTCCTGGAAGCTGAAGGAGAGATCCTGCTGGATGGTTCACCGGCGGATCTGTTCCTTTTGAGAAAGAATGTGGGTTACGTTTTCCAGAATCCGTCTTCGCAGATCATAGGTGCCACCGTGGAAGAGGATGTGGCCTTTTCGCTGGAAATATTGGGACTCGACGAGAGCGAAATGAGAAAAAGAATAAAGAAGGTCTTAGAACTGGTGGGACTCTCCGGTCTCGAAAAGGAAGACCCGCTGAACCTTTCAGGAGGTCAGAAACAGAGACTCGCGATTGCCTCGATGCTTGCTCGTGACACACATTTCCTCGCTTTAGATGAACCGGTTTCCATGCTGGATCCTCCTTCTCAGAGGGAAATATTTCAGGTGCTGGAGAGTCTCAAGAATGAAGGAAAGGGAATAATACTGGTAACACACGAACTGGAGTATCTGGATGATATAGACTTCATACTCCACATCTCGAATGGTACAATCGATTTCTGTGGAAGTTGGAAGGAATTCATGGAAAGGGAGTTCGACGATGTGGAAATTCCTTTTAAGTGGAAACTCTGGAAGAAATGTGGGAAGATAAATCTGTGGGAGGATCGATATGAGAATTCTGGTAACCAATGACGACGGGATACAGTCTAAGGGGATCATTATCCTCGCAGAGCTTCTTTCTGAGGAACACGATGTGTTCGTGGTGGCTCCCGATAAAGAGAGGAGCGCAACAGGTCACAGTATCACCATACATGTTCCGCTCTGGATAAAGAAGGTTTTCATCTCAGAGAGGGTGGTTGCGTACTCCACCACGGGAACACCCGCGGACTGTGTAAAGCTCGCTTACAACGTGATCATGGATAAAAAGGTCGATCTCATCGTGAGTGGTGTGAACAGGGGACCCAACATGGGTATGGATATTCTCTACTCTGGAACGGTCTCAGGTGCGATGGAAGGTGCCATGATGAACATTCCATCGATTGCCATATCGAGTGCGAACTACGAGAGTCCTGATTTCGAAGGGGCGGCGCGTTTTCTGATCGACTTTCTGAAAGAATTCGACTTCTCACTCCTCGATCCCTTCACCATGCTGAACATAAACGTTCCCGCTGGTGAGATAAAGGGATGGAAATTCACAAGACAGAGCAGAAGAAGGTGGAACGATTACTTCGAAGAGAGAGTCTCACCTTTTGGGGAGAAGTACTATTGGATGATGGGAGAGGTCATCGAAGACGACGATAGAGATGACGTTGACTACAAAGCTGTTAGAGAAGGGTACGTCTCCATCACTCCGATACATCCCTTCCTCACGAACGAACGGTGTCTGAAGAAGTTAAGGGAGGTGTACGATTGATGTACAGAATAAGAGTCTTTGGGGATCCTGTTTTGAGAAAGAGGGCAAAACCCGTCACGAAGTTCGACGACAACCTGGAAAAGACCATAGAGAGAATGATAGAGACAATGTATCACTACGACGGTGTGGGGCTTGCAGCGCCACAGGTTGGAATATCTCAGAGGTTCTTCGTCATGGACGTTGGAAATGGCCCGGTTGCCGTGATAAACCCTGAGATCCTTGAAATCGATCCCGAAACCGAAGTGGCAGAGGAAGGATGTCTCAGCTTTCCCGAGATCTTCGTCGAGATAGAAAGGAGCAAAAGAATAAAGGTCAGATACCAGAACACGAAGGGAGAATACGTGGAAGAGGTGCTGGAAGGTTACGCTGCAAGGGTTTTTCAGCACGAGTTCGATCATCTGAACGGAGTTTTGATCATCGATCGAATCAGTCCAGCGAAGCGCCTTTTGCTCAGAAAGAAACTCATGGACATAGCAAGAACCGTTAAGAGATGAGGAGGGAAGAGACGTGAAAAGGTGGTTGCTTTTGATTTCCTTGATGGTGTTCTCCGCGGTTGTGTTTTCGTTCTCCGCACCCGTTGATTCTCCAAGGGTTTCGGCAACTTTCGGTGAGTACAGAGGGAGTGGAAACAGAGGACCTCATTTTCACATGGGAATCGACTTTTCTACGGGATTGAAAGAAGGAGTTCCCATATACGCCTCCGAGAGAGGCTGGCTCGTCAGAATCGAAATAGACGAGGACGATATATACGGCTACACAGTGGTTCTGGAACACGAGAATGGATACAGAACGCTCTACGCCCATCTGAGCAGATTCTCGAAAAAACTGGAAACGGTAGCGAGTTCTTTGAAACAAGAGTTCGGGAATGTGAGGATCGTCGTGAACTTCCCTGAGAAAGAGATCTGGTTCGAAAAAGGTGAAGTCGTCGGATACTCAGGAACCACAGGAGAGGCACCCATTCCCCACGCACACTTCGAGATAAGAGACAGGAACGAGGAAGTTTCCTACGACCCTTCGACTTTCTTGAACCTTCCAAAACCCGTGGATGAGGATATTGTTCTGGAAAAAATAAAGATAGGAGACAGTGTGTACGATTTCGTCGAGGGGAGGACGTACCCGTTCAGTGGAAATTTCCCGGATCTTGCGATCAAAGCCTATTCGAAAGGGTTCAACAACACGTTAGGACTCAAGAAGATCTCACTCCTTTTGGAAGGTGAAGAGATCTATCAGATCTCTTTCGATCAGATTCCCTGGTCCGAGTTCACAAACGTCTGGGGAGTGTACGATAGGAAGTCCGTTTCGGCCGCGTACAGGTTTGAGCTCTGGTACAAATTGTTCCCCGAAACGTTTTCTTCGATGATAAAGGTGAACAAATTTCCCGAATTGGGAAAAGCCCCAGATTTTGCCAAATACACAGTCGTTATTGAAGATATCTGGGGCATGAAGAAGGAATTTTCTTTCTACCTGCAGCGGAGGTGAAATCATGCTCTTTCTGTTTTTTGGGAAAAAAAAGAAAGACCTGAACAAAAATCCGTTTTACAGGGAAAAAGGGGCTCTTGTAATTTACATAAAATGTGACAGATGTGGGGAAGTCTTCAGAAGTCATCTGAGAACGGGGTACGATTTCATCGTGGATTACGATAACCCGGGCGTTCCTTACAAGATAGACAAGCTCTATGTGGGTTCAAAATGTCCCAACAAGATACATCTTGTTGCGACCTTCACGTCTTCTTATAAACCGGTGTCTGTTTCTCTGGAGGGTGGAACTTTTATAACCCGAGAAGAATTTGAAGAATCGCAAAAACAATGATGTAACCTTTTTTTAAGAAAGATTGTGATAAACTATCAAGGCTGTTATAAGATCAGCGAAAGGAGGATGGGAGATGAGAAGACTTTTCACCAGCGAGAGCGTAACAGAAGGGCATCCGGACAAAATCGCCGACCAAATTTCCGACGCCATACTCGACGCCATGCTCGAGCAGGATCCAAGGAGCAGGGTTGCCGTTGAAACACTCGTAACAACAGGGCTTGTCATCATCGCGGGAGAGGTTACCACCAGAGCTTATGTTGAGATCCCCGATATAGCGAGAAAGACCATTCTGGAGATAGGATACACGAGGGCGAAGTACGGATTCGATGGGGAAACCTGCGGAGTGCTCACCAGCATCCACAGTCAGTCTCCTGACATAGCTCTCGGTGTAGACAAGGCGCTCGAGGTCAAAACAGGAGAGGAAGTGGCTGACGAGTTCGAGGCGCTCGGAGCTGGCGACCAGGGAATCATGTTCGGCTACGCCACCAACGAAACCCCTGAGTACATGCCCCTTCCCATAACTCTCGCCCACAAACTCGCCATGAGACTCGCTGAGGTCAGAAAGAACGGGACTCTTCCTTTCCTCAGGCCAGATGGAAAGACACAGGTGACCATAGAATACGAGGACGACAAACCAGTCCGTGTCGACACAGTGCTTATTTCAACTCAGCACGATCCGGATATCTCCCAGGCAGATCTGAGAGAGGCGATAATAGAACACGTCATAAATCCTGTGATTCCAGAACAGTACAGGGACGACAAAATGAAGATACTGGTGAATCCAACGGGAAGATTCGTTCTTGGAGGTCCCATGGCCGACACGGGGCTCACAGGGAGAAAGATCATCGTTGACACTTACGGTGGTTGGGTACCCCACGGCGGAGGGGCGTTCAGCGGAAAAGATCCCACAAAGGTTGACAGATCGGCTCACTATATGGCAAGATATGTAGCGAAGAACGTTGTGGCTGCAGGTCTTGCGGACAAGTTCCTCATACAGCTTTCTTACGCTATAGGTGTCGCGAAACCCGTTTCCATAATGATCGACACGTATGGAACCGCGAAGGTGGATGAAGACAAACTTCTCAAGGTGATCACTGAACTGTTCGATTTCAGACCGGGTGCGATCATAAAGAAACTGAATCTTTTGAGACCTATTTACAGGAAAACAGCCGCCTACGGTCACTTTGGAAGGAACGAAGAGGAATTCACATGGGAGAAACTCGACATGGTAGATGAGTTGAAAAGAGCTTTCAATATGTAAGGGAGGGATCAAGTAGTGCCGAATATCAAATCTGCAAAGAAAAGGGTCAGAGTTTCTGAAAAGAGAAGACTCAGAAACAAGGCTTACAAGACTTTCTTCAAGAACAGAATAAAAGAGGTTCTCAAAGCTATCGAGAACAAAGAACCGAAAGAAGTCGTTCTTGAACTCACCAGGAAAGCGCAGGCTGCCATAGACAAAGCCGTTTCCAAGAGAGTCATCCACAAGAATCAGGGTGCGAGAAGAAAAGCGAGACTTTTCGAGAAGGTGAACGAATACCTGAGAACTCTCGAAACAACTCAGGAGTGAATTTCTTGCTGTTTTTGAAAGCTGGCCCCCTTGCGGGGCATTTCTGATTTTAAAGGGAGGGATTGTGCGTGGAGGGGTTGATAGGGGATTTCTTCAGGTTGATTATTAAAAACTGGTATTTTTCCCTACCCGCCGCTCTTTTTCTCATGTTCGCTGCCAGGTATGTTGAACACATAGCTTTTGCGGTGATCGGTTTTGTAATCGGTATCAACTTCGTGTTTCCTCTTCTTTCGAATATCGAATTTCTCAAATCCTATCTCACGAATGAGAATGTGAAGGTTGTTGTACTGGTGGCAACAGGTGTTTTAACCGCAGTTGTGCTTTACGTTCTGTACAGATACCTGGTGTTCCTCGCTGCTCTCGTCACCGTGACCTTCGTCGCTTACTACGTTATAAACTTTCTGGTGAGTTCTTTTAACCTTCAAAGTGTTCAGTACATGAACTGGATAACGTTTGGACTTTCCGTTTTCATTGGACTTTTAGCTGGATTGACTGCTTACCGCAAGGAAAAAGAATTTGCGAGAATCCTCTCAGTTGTGGTGGGTGCTGCGATTTTTTCAGTGCTGGTTTTGTTCTACCTTTCCGGACTCTTTGGTGTGGAGTTTAAACCGGAATCTCTCTTTGCGAACAAGATGATGATCTTCTTCTACGTGTCTCTTTTTCTGCTCTTTCTGTTTCTTTCTGCATGGTTCACTTTCAGGAAAAGATCCTATCAAAAAACTAGTTCGTAAATGTTAAAATAGTATAGAAACCAGATCTGAAAGGAGGTGTACCCCCTCGGGGGATCGAAGATGGCGAAAAAGAAGATTCTGGTGGTTGACGACGACCCGGCAATTCTCGAGCTGGTAGGATACAACCTTTCCAAAGAAGGATACGAGGTGCTCAAGGCTTACGATGGAGAAGAAGCACTCAAAATTGCCAACGACGAGGATGTGGATATGTTCATAGTGGATATCATGCTTCCTGGAATTGACGGTTTCGAGCTGGTCAGGAAGATCAGGGCTATAGAGAAATACAAGAACACCCCCGTGATCTTCCTGAGCGCGAAGGGAGAAGAATTCGACAAGGTGCTTGGGCTGGAGCTCGGTGCGGACGACTACATCACCAAGCCGTTCAGCGTGAGAGAGCTTCTTGCGAGGGTGAAGGCTATATTCAGAAGGCTTTCCACCGCTACTCAGAGCAAGGAAGAAAGGCCTAAGAAGATCATAGCCAAGGATCTTGAAATCGATGTGGAAAAGTACGAAGTGAAAGTGAGAGGGAAAAAAGTGAACCTCACTCCTCTCGAATTTGAACTGCTCCGATTCCTCGCGGAAAACGAAGGAAAAGTTTTCAGCAGGGATGTTCTCCTTGATAAACTCTGGGGATACGATTATTACGGAGATACGAGAACTGTAGATGTTCACATAAGAAGGCTGAGAACGAAGATAGAAGAAGATCCTTCGAATCCGAAATACATAATCACTGTGAGAGGAAAGGGATACAAATTCAGGGATCCCGGAAAGGAAGACTGATCAATGAGTATTTTCCTGTTTGTCGTAGTAGCTGTTCTATTCGTCCTGCTCTTTTTGGTGTTCAGGAAGCGCCTATCTGAGTACAGAATCTTCATCGAAAAGCTGTCAGATATGCTGGGGGAAAAGGACGTTCCCCCGCTTTATCTTTTCGAGAGACTGAAAAAGTACGTAGACAATCTGAAAGAAACAATTTCGCGTGTTGAGGTGAGCAGAGACAACTTCCTCACGATTTTGAACAGCCTCAGTGAACCCATATTCATTCTGGATCGAGAGGGGAAGATCACGTTTTTGAACGAAATTGCCCGTGAACTTGTGCAGGGCAGGATCAATCCCGAAGGAAGGCCTTATTACGAAATATTTGAAGATTACTACATAAGCGAAATGGTGGAAGAGACCATTAAGAGTGAAGAGCCACAGGAAGGAACTCTTGTTACCTACGTTGGTAACGAGAAGAAATATTTCCACGTGAAGGTAATACCTGTCGAACTGAAAAGTGGTGATAAGATCTTTGTCATTCTCTTCCACGATGTTACTAAAGAAAGAAAGCTCGATGAGATGAGAAGGGAATTCATAGCAACAGTTTCACACGAACTTAGAACCCCTCTCACTTCCATCCACGGTTATGCGGAGACGCTCCTTGAAGATGATCTGGAGGACAAAGAGCTGGTTAAGAGATTTCTGAAAATCATAGAAGAAGAATCTGCCCGTATGACACGTCTCATCAACGATCTTCTCGATCTCGAGAAAATGGAAGAAAGTGAAGTCAATTTTGAAATGAAAGATGTGGATCTGTGTGAAGTGATAGAATACGTTTACAAAATCATCCAGCCTATAGCCGAAGAAAATGAAGTGGACCTCGTTGTTGAGTGTGAGGATGTTGTGGTCAGGGGAAACAAAGAAAGGCTGATCCAGATGCTCCTGAATCTCGTGGACAACGCTGTCAAGTACACATCTTTGAAGGAAAAGGGAGAGAAAAAGGTCTGGGTGAGGGCCTACGATACACCGGACTGGGTGGTCTTGGAGGTAGAAGACACGGGACCTGGAATACCCAAAGAAGCCCAGAGTAGAATCTTTGAAAAGTTCTACAGGGTGGATAAAGCGCGTTCCAGAAAGATGGGTGGAACAGGCTTGGGTCTCACGATAGTGAAAACGATCGTCGACAAACACGGAGGAAGGATAGAGGTTGAGAGTGAGATCAACCAGGGAACGGTGATGAGAGTTTTCCTGCCGAAAAGAGGGTGA

Protein sequences of DBSCAN-SWA_2

>NC_009486|1152805:1160418|1159179_1160418_+|WP_011943666.1|DBSCAN-SWA
MSIFLFVVVAVLFVLLFLVFRKRLSEYRIFIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQGRINPEGRPYYEIFEDYYISEMVEETIKSEEPQEGTLVTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDEMRREFIATVSHELRTPLTSIHGYAETLLEDDLEDKELVKRFLKIIEEESARMTRLINDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVVVRGNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQSRIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPKRG
>NC_009486|1152805:1160418|1157733_1158396_+|WP_004082166.1|DBSCAN-SWA
MEGLIGDFFRLIIKNWYFSLPAALFLMFAARYVEHIAFAVIGFVIGINFVFPLLSNIEFLKSYLTNENVKVVVLVATGVLTAVVLYVLYRYLVFLAALVTVTFVAYYVINFLVSSFNLQSVQYMNWITFGLSVFIGLLAGLTAYRKEKEFARILSVVVGAAIFSVLVLFYLSGLFGVEFKPESLFANKMMIFFYVSLFLLFLFLSAWFTFRKRSYQKTSS
>NC_009486|1152805:1160418|1155771_1156098_+|WP_011943663.1|DBSCAN-SWA
MLFLFFGKKKKDLNKNPFYREKGALVIYIKCDRCGEVFRSHLRTGYDFIVDYDNPGVPYKIDKLYVGSKCPNKIHLVATFTSSYKPVSVSLEGGTFITREEFEESQKQ
>NC_009486|1152805:1160418|1154287_1154782_+|WP_011943662.1|DBSCAN-SWA
MYRIRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEVLEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIARTVKR
>NC_009486|1152805:1160418|1152805_1153567_+|WP_011943660.1|DBSCAN-SWA
MKITLNNVSFRYNGNYVLKDVNAEFETGKIYVVVGRNGSGKTTLLKILAGLLEAEGEILLDGSPADLFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEILGLDESEMRKRIKKVLELVGLSGLEKEDPLNLSGGQKQRLAIASMLARDTHFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDIDFILHISNGTIDFCGSWKEFMEREFDDVEIPFKWKLWKKCGKINLWEDRYENSGNQ
>NC_009486|1152805:1160418|1157374_1157665_+|WP_011943664.1|DBSCAN-SWA
MPNIKSAKKRVRVSEKRRLRNKAYKTFFKNRIKEVLKAIENKEPKEVVLELTRKAQAAIDKAVSKRVIHKNQGARRKARLFEKVNEYLRTLETTQE
>NC_009486|1152805:1160418|1154795_1155767_+|WP_004082174.1|DBSCAN-SWA
MKRWLLLISLMVFSAVVFSFSAPVDSPRVSATFGEYRGSGNRGPHFHMGIDFSTGLKEGVPIYASERGWLVRIEIDEDDIYGYTVVLEHENGYRTLYAHLSRFSKKLETVASSLKQEFGNVRIVVNFPEKEIWFEKGEVVGYSGTTGEAPIPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFPDLAIKAYSKGFNNTLGLKKISLLLEGEEIYQISFDQIPWSEFTNVWGVYDRKSVSAAYRFELWYKLFPETFSSMIKVNKFPELGKAPDFAKYTVVIEDIWGMKKEFSFYLQRR
>NC_009486|1152805:1160418|1156171_1157359_+|WP_004082170.1|DBSCAN-SWA
MRRLFTSESVTEGHPDKIADQISDAILDAMLEQDPRSRVAVETLVTTGLVIIAGEVTTRAYVEIPDIARKTILEIGYTRAKYGFDGETCGVLTSIHSQSPDIALGVDKALEVKTGEEVADEFEALGAGDQGIMFGYATNETPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDKPVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDKMKILVNPTGRFVLGGPMADTGLTGRKIIVDTYGGWVPHGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLRPIYRKTAAYGHFGRNEEEFTWEKLDMVDELKRAFNM
>NC_009486|1152805:1160418|1158456_1159176_+|WP_011943665.1|DBSCAN-SWA
MAKKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED
>NC_009486|1152805:1160418|1153544_1154288_+|WP_011943661.1|DBSCAN-SWA
MRILVTNDDGIQSKGIIILAELLSEEHDVFVVAPDKERSATGHSITIHVPLWIKKVFISERVVAYSTTGTPADCVKLAYNVIMDKKVDLIVSGVNRGPNMGMDILYSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWKFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNERCLKKLREVYD

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011943660.1|1152805_1153567_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-23	32.8
WP_011943661.1|1153544_1154288_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_011943662.1|1154287_1154782_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	1.1e-21	45.5
WP_004082174.1|1154795_1155767_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	3.0e-07	30.8
WP_011943663.1|1155771_1156098_+	hypothetical protein	NA	NA	NA	NA
WP_004082170.1|1156171_1157359_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.0e-138	65.3
WP_011943664.1|1157374_1157665_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_004082166.1|1157733_1158396_+	hypothetical protein	NA	NA	NA	NA
WP_011943665.1|1158456_1159176_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-43	44.3
WP_011943666.1|1159179_1160418_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	3.3e-35	36.3

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NC_009486|1497429:1515350|DBSCAN-SWA
AATGGAGCCCATCATTGAGATCGAAAACTTCAGCGCTTACTACGGCGAGAAGATAGCCGTCAAGAACGTGACGATGAAGATCTTCAAAAACCAGATAACCGCCATAATAGGTCCCTCCGGATGCGGTAAAACAACTCTCCTGAGGAGCATCAACAGGATGAACGATCATCTGCCTGGATTCAGGGTTGAAGGGAAGATATACTTCAAGGGACAGGACATCTACGATCCACAGCTCGACGTGACGGAGTACAGAAAGAGAGTCGGTATGGTCTTCCAGAAACCGACACCTTTTCCCATGTCGATCTACGACAACGTCGCGTTCGGCCCCAGGATACACGGGGTGAAGAGCAAACACATTCTCGACCGGATAGTAGAGGAATCATTGAAAAAGGCAGCCCTATGGGACGAGGTGAAGTCAGAACTGAACAAATCTGGTACGAGACTCTCCGGCGGTCAGCAGCAGAGGCTCTGCATAGCGAGAGCACTCGCCGTTGAACCCGAGGTGATTCTTCTCGATGAGCCGACATCGGCCCTCGATCCCATAGCGACTCAGAGGATAGAAAAGCTTCTGGAAGAACTCTCTGAGAATTACACCATCGTGATCGTCACACACAACATCGGCCAGGCGATAAGAATAGCGGACTACATAGCGTTCATGTACAGAGGAGAACTCATCGAATACGGACCAACGAGGGAGATCGTGGAGAGACCGAAGAACAGGCTCACCGAGGAGTACCTGACAGGAAAAATCGGATGATGGAGGCGGAAAGTATGGTCGATCACGTTCACTTCGAAAGGGAACTCACACTTCTCAAGTCTGATGTCTCGAAGATGCTCTTTCTGGTCTCTGAATCTTTGAACGACGCGATAGAGAGCCTCGAGACGATGAATGAGACGCTCGCCAGGAAGGTCCTCGAGTCGGACGATATGATAGACGAACTGAACAGGGAGATAGAAGAAAAAGCTTACCAGATCATAGCGAGGTACAACCCCATCCTGAAACAGCTCAGGTACATCATCACCATCTTGAAATTTTCAAACGATCTGGAGAGGATAGGAGATCTCTCCTGCAACATAGCTGAGAAGTGTCTCTTTCTCTCTGAAGAGAAGATCAAATTCGAAATGCTCAAGGAACTCAAAGACATGTTCGGAAGCACCCTGAAGGTGGTTCAGGACGCTTTCAAGGCCTTCGTTGAAGAAGATGTGGATCTGGCTTTCAGGCTCTGGAAGTTCGACGACGTGATAGACGAGATGGAAAAGAAGATCAGAAGAATCGTGGTGGAAAGAATAAGGGAGGGAAACATCTCGGCCGAGCTGGCGCTGGTTTACATACTCATCGCAAGAGACCTTGAGAGGGTGGGAGATCACGCCAACAACCTCTGTGAGGAGGTCATATACATAGAAACGGGAAAAAACATGAAGGAATTCCTGAGGGGTGTTGAGAGTGGGAGTGAAGGTGCTGATAGCTGAAGACGACGAAGACATAAGGAGCGTGTTGAAGAGATACCTGGAAACCGAAGGATACGAGTGCGACGAAGCAGAGTCCCTTTTCGATCTCAAGAAAAAACTCTCTGAAGGAACGTACAACGTGCTTCTCCTCGATCTCATGTTTCCCGACGGTGTGGCGATGGACGAAATTCCCGAGATGAAAGTTTCTCACCCGGAAATGGCCATCATCATCATCTCGGCAAGGGACAGGGACATGGACCGCATCTTTGGAATAGAGCTCGGAGCGGATGATTACGTGACAAAACCTTTCAATCCAAGGGAAGTTCTCGCACGTGTGAAAGCGGTTCTGAGAAGGATGGGGAAAGAACAGAAGGTACTGAGATTTGGAAGACTCGAGATCTTTCCAGAGGATTACATAGTCAGATACGATGGAAAAAACGTTGAGATGACAGCCAAAGAGTTCGAGCTTTTGAAACTCCTCGCCACGACCCCGAACAAGGTCTTTTCAAGAGAGGAGATCCTGAACAGGGTGTGGGGAGACGATTACGTCTCTGACAGGGTAGTGGATGTCCACATCAGCGCCATTCGATCGAAGATAGGAAAGGGATGGATAAAAACGGTGAGGGGATTGGGATACAAGTTTTCAACACGGGGTGATGAGGGTGATAGAGCTTGAAGATCTCGATCATATCAGAGAAGCGATCGTGATACTGAAGGGCCTGGAAGTGGAAGGTGCGAACAAACCGGGTGAGAAACTCGGCTTCAAAAAGGGAAAGAATCTGATGTCGATCTTCACGTGCAAGGAAATGGATAGATTCATCAGAGATGTTCAAGAAAGAAAGAATTTCTCCCTTGAAACAAACGCCTATTTTTTTGAACTCCACTCGAAAAGGTTCGTCTCCCTCCGCTACCTTCCGAAGAAGAGTCTTCTCTTTGTGAACGATCTCACCGAGGAGAGAACTCTCAGCGAGGCAAAACTCGATTTTGTAACGGCCGTCTCCCACGAGCTGTTCACACCTCTTTCTGCGTCAAAGGCAAACGTTTTTCTTCTGAAGGACATAGAAAACGATCCAGAAAAACTCGAAATACTCGGAAAAGTTGAGCGCTCCTTGGACAGAATGGAAACGATCATCAGACAGCTCAAGGTGCTCACCATGATACAGCTGAGACTTTACGAACTCAAGATGGAGCACATTCCTGTCGAAGAAGTCGTTCACATGGTCTTGGAAGAGCTTCGAGAAAAGATCGAGTCAAAGAAGATCAAGGTAAACGTTTTTGTGGATGTTGAAACAATCGAAACTGACAGGTTCGTGTTCCACACGATCTTGAAGAACCTCGTTTCAAACGCCGTGAAGTACTCTTATCCCGATTCTGTGGTGGAGATTTCTATCACCGGTGAAAGACTGAGTGTGAAAGATCAGGGAATCGGTATCAAAGAAGAGGAGAAGAGCAGGATATTCGAGCGCTTCTACAGAGGTTCAGAAGCACTCAAGATGGCGCCCGGTTCTGGCCTGGGACTTTCCATAGTGAAACACCTGTGCGACACGATAGGTTACAGGCTGGAAGTGAACTCTCAGTGGCTCGTTGGATCAGAGTTCATCGTTCACTTCAAATGATGAACTCCTCTTCTTCCCACGTTTTCCCCTCCGGGTTGTGCCACCCGCCTTCTCTCGTGCACCAGGCCGGAAGCGGAAACTTCACCGTGAGAGGAAGGTTCAAGAACGGCTGATCTATGATCACTTCTCCCTGTCTCAAGAGTGCTGCTTTTCTCTTGTAGTGCTCTGTGAGATGCGAGTATTCGGGTTTTATGAGTTCGGCTCCTTTCTGCCTGCCCACAACCACCGTAGCGGCTTGCGTGATTACCCTGTAATCCACTTCGGAAGCGGTCTGTTCGGCTCCAATGAGGATCACTCTGAAAGATCTTCCTCTTTCCGCCACATCTCTGAAGATGTTCGCAAGGGCTCCTCCGCCGTGTCTTGGTGCGTACTTGTTCAGCTCGTCCAGGAAAATGAAAACGGGCTGGGTGAAACCGCTGTTTCTTTCTTTTTCTCTCATTACCTCGGAAAGAATCGCACCTACAACGAACGCCTGTGCGCGTTCTCTCAACTTCGAAATGTCGATGACTGTGACCCTTCCCGGCACGTTCCAGTCGATCCGATAGTTGGTCTGCCACGGTTCCACTTTCAGAGGCGGTTTCACCCAGAGTCTGTCGAAGTCCATCTTTTGAGCGGCTTTCAATCTCCTGATCAGCATCCCGATCGTCTGCTTCTGGACGTGTTCTCCCAGGAGATACTCTCTTGTCCTTCCACCTTCTCCAAGATCTTTTATCAAACTATCGAGATCAAGTGGAAGATCCACGACTTCACCTTTCTTCATCACCACTTCGCGCAGTGCTTCTGACGGCAGTTTTTTTCTGTCAACGATGTATCCCTCTTTCAGAAATTCCTGGTACATCTCTTCCATTCTCTGGGAAAGGTGCTCCTGGAGGGACCAGACCGCGAGCTGAAAGTTCTGGTTTCTCGTCATCTCATCTGGATCGAACATGAGTTCCAGAAGGTTCATTTCGACGATGTCGAACACGTCCCAGCCGTAAACGTTCACACCGATCAATCTCTTGTTGACATCCGGTATGTAAGCTCCCTTCTCCCTGCTGGGAGCGTAGAATGCGACATTTTCAAAAGGTTTTGGTTCAATGCCGAGAACCCTGTACATTTCATCCCATTTCTCCCTTTCTGAATACCACTCCTTCGAAATGCGATCGAGAAACAGCAGACTCTCTCCCTTCACGTTGAAGATGATGTATCTCGCCTCTCTCAGCTCTCTCATCAAATCTCCATCGTTTTTGCTGGACGTTTCTATCATCGACTTGACGAGGAACGTGGTGTAAGACGTTTTCGCCGCAACACCGGACTGTCCGGAGACGTTTATGTGGGCTCCGTTGTCTCCCAGGATGTATCTCAAATCGAGATAAGCCGGCCTTCCGTTCTTCAGCAAGCCAACTGGCAGTGCAACGTTCTTTCTCTTCAACTCATCGAATCCAAGGGCGATGTCTATCTCCTCATCTCCGACGAGAAAGACGGGGGAGCCTATGTTTGGAGGGATCTCCGGAGCGTCTTCGAGGAGCTTGTCTCCTTCTTTCAGAAACGATCTTGTCACCTTCACCTTCGCGATGTATATCGGATAGGCAGGTTTCAACTTCTCGAGTGCAACTTCCTCTTCGTAGCCGTTTCTCAAATCTCCATCCCATCTGTTCTGTATATCAACGATCATTCCGTACGTGACGACGGTGCCGTACCCCGTGAGGTACTCAACCTTCACAACATCCTCTATCTGAGCGAATACCTTGTACGCTTCTCCTGGCTTTTCGGCGGTCATTCGAACGAAGAATTCGTACGGACTGGACTGGAATATACCGGTGACAACCCCTATCTTTCTTCCGCTCATTTACCTATCCCTCCTCGATGAGCTGTTTTCTGTACATTCTACTGTACATGCCATCCCTGATCATCAATTCCTCGTGAGTGCCCTCTTCTATCACTCTTCCCTCGTGCAAGACATATATCCTGTCGGCGTTTTTCAACACCTTCAATCGATGTGTTATGACGACGATCGTTTTTCCTTTCATTCCTTTTCTGATCGAATCTATGATCCTCTCTTCGGTTTCAGGGTCAACGGCCGAGAGACAGTCGTCGAATATGTAAACTTCGAAATCTCTTATGAGAGCGCGGGCTATGGTGATTCTCTGTTTCTGACCGCCCGAAAGCGTCACACCTCTTTCCCCAACGATCGTGTCGAATTTTTCTGGAAAGCTCATGATATCGTCGTAGACGGCCGCAAGTTTTGTCACTTCTTCGATCTTTTTCTCATCGACGTTTTCCAAACCGACCGTTATGTTGTTTCTCACCGTGTCTGAGAACAGAAACGTTTCCTGCGGAACCAGAGTGACGATGGATCTGATATTCTCCGAAGAAACGTCGTTTATGTCCACACCGTTTATGAATATCTTTCCCCTTTCCACCGGATAGAGCTTCACGAGAAGCTTTGCTATCGTGGACTTTCCACTTCCAACACTGCCGGCGATGCCTATCATTTCTCCCCTGTTTATCTTCATGGTGACGTTTTTCAGAACTTCACGTTCTGTTCCGGGGTATCTGTAGGTCAGGTTTCTCACTTCAAAACTTTCAAAGTGATCTATTTTGATCGGTTTTTCGGGTTCTTCAACTTCGGGCTGGGCAGTGAAGATCGTGTCCAGACGTCTCATAGCCGCTCTTCCCCTCTGGAACAGATCCACCATGAAACCGTAGGCCATCATCGGCCAGACGAGCATTCCAAGGTAGGAATTGAAGGCTATGAAATCACCGAGAGAGATCTTCCCGTTTATAACGGCTCTTCCACCGTAGAGAAGGGCGAGGAAAAAAGCGGTCGAAGCGATAAGGTTGATGAGAGGCCTAAAAACGCTGGAGACTTTGATTGCACTGAGAGTGCCTTCGTAGTTTTTGAGTGCCCTGTTTTCAAATATCTTGAATGAGACGTCTTCCACCGAGAAGCTCTTCACAATGCGCACACTCGAAATCGTTTCTTCGGTGAACCCGGAAAGTTCCGAGAAGGATCTCTGAACTTCCGATACTTTTCTGTGTATGAGTCGTCCAAAGCTCATCGAAACAGGGGCAAGAAGCAAAAGCGGCGCAAAGCTGATCCAGGAGAGCTTCCAACCCACGTTACCTATCATGAAGAAAAAGACCATCACGATCATGATGAAAGAATCGAAGAAGAGTATCGCACCCTGGCCGAGCACTCTTCTCAGAAGGCTCAGATCGTTGGTGAACCTTGCCATGAGTTCACCGCTTTTCATTCGATCGAAGAAACCGGGAGTGAGACTGAGCAGCTTTGAGAACATCTTGTTCGATGTCTCGAGGAAAAACTTTCTTGCAGTGCCACCAAGGAAGAATCTCCAGAAGAACCTTCCAATAAACATCCCGCTCGCGGCGGCCATCACCCAAAACAACATTATTTTGAGTGTATCGAAGTTCATCGTTTCTGTGTTCAGCATGTCAACGATCTTTCCGATGACACGTGGAATGTAGACTTGAAGGAGGTCCACCGCGATGAGTGAAAGAACACCGAGAAGGTATTTGTGCCAGTTTCTCTTCAGGAAATCAACGAGAATTGAGGAAGTCTTCAATTCTATCCAGCGCCTCCGTAAGTCTTTCTATAGATGTGGCAAAAGAAAGCCTCACAAATCCAGGCTTCAGAAAGGCGGATCCTGGAACGAGTGCAACCTTCTTTTCTTCGAGGAGCCTTTCACAGAATTTCACATCGTCACCCCGGACTTTGAAAAAGAGGTAGAACGCACCTTCTGGTTCCACGAACTTAACACCCATCTTTTTCAATCTTTCCACCACGAAATTTTTTCTTTCTTTAAAGGTCTGAACCATGTAAGAGTTGTCCACTTCCAGAGCCTTCAAGGCGGCGTACTGTGCTACCGTGTTGATACAGGAGGTGGTGTGAGACTGGATCTTCGACACAGCGGTCGCTACTTTTTCGCTCGATATCAGGTAACCCACCCTCCAGCCGGTCATGGAGTGAGACTTCGAGAAGCCGTTTATGTAAACTATCCGGTCGAATCCTTCAGAAACATCGAGTATCGATGTGAATTCATCCGTGTAAACAAGGGAATCGTAGACTTCGTCGCTGATTATGTAGAAATTCCTCTTCTTGGCAAGTCTCACAAGTCCTTCAAGGAACTCTCTTCTGTACACCACACCAGTGGGATTGTTCGGAGAGTTGATAAGAACGGCTTTCGTTTTCCCAACAAGAAGCCCTTCCACCTCTTCCAGACTGGGCTGGAAATTTTTACTCATGAACGTCTCAACCACGTTCACCGTGCCACCAGCAAGGATGATCTGAGGAATGTAGCTGACCCAGACGGGAGAAAACACGATCACTTCGTCACCGGGATCAAGAAGGGCCATGAAAGCATTGAACAGAGCCTGTTTCGCTCCATTCGTCACCACGACCTGATCCGGTGAGATATCTTTTTTGTATCTCTCGCCTATCCTTTTCGCTATACCCTCTCTGAGTTCGTAGATACCACGAGGATCTGTGTATTTCACTTCTCCTTTCTGGAGAAATCTCATCGCTTCTTCCACGACGGGTTCCGGTGTGGGAAAATCCGGCTCACCAGCCGTTAGATTGATCACGTCTTCTCCCTTTTTTATGAGGGCTTTGGCCTTCGCGTCGAGTTCCATGGTTTTCGATATGGGAATCTCTGATATTCTCCTGGATACCATTTAGAAACCCCCCTGGTCGTGGTTTCATATTTAATACTACCACAAAGATCCGATTTAGACAGGTTAAACTTCTCATGTTATTCTTTTAAAAGAAAGGAGGAGTAAGGAATGGAAGCGGTGATTTTCGACATGGATGGAGTGCTCATGGACACAGAGCCTCTCTACTTCGAAGCTTACAGAAGAGTCGCGGAAAGCTATGGAAAACCTTACACGGAGGATCTCCACAGGAGAATAATGGGAGTTCCTGAAAGAGAAGGTCTTCCCATCCTCATGGAAGCTCTGGAGATAAAAGATTCTCTGGAGAACTTCAAAAAGAGGGTCCACGAAGAAAAAAAGCGCGTTTTCTCTGAGCTTCTCAAGGAAAATCCGGGTGTAAGAGAGGCGCTCGAGTTCGTAAAGAGCAAAAGAATAAAACTCGCGCTCGCAACCTCCACACCACAGCGAGAAGCGCTGGAGAGATTGAGAAGACTCGATCTCGAAAGGTACTTCGATGTCATGGTGTTCGGTGATCAGGTGAAGAACGGAAAGCCTGATCCAGAGATATACCTTCTCGTTCTGGAAAGGTTGAATGTGGTCCCAGAGAAGGTTGTGGTCTTCGAAGACTCAAAGAGCGGTGTTGAAGCCGCAAAAAGCGCCGGCATAGAAAGAATCTATGGAGTCGTTCACTCTTTGAACGACGGTAAAGCGCTTCTTGAAGCGGGTGCGGTTGCTCTGGTGAAACCCGAGGAAATCCTGAACGTTCTCAAAGAGGTTCTTTAAATCTGTTCGTGATCGGCATTCTCCAGTCTTTCCCAAAAGCTCTCGTGGAGATCTTCACGCCGATAGCGGCCTGTTTTCTCTTGTATTCGTTCTTTCGTATCATTTCCGTCACGTCGAGCACGGTCTTCCTGTCGAAGCCTTTTGATGCGATTTCTTCTGGATCGAGCCCTTCTTCTATGTAGAGTCTCAGTATTTCATCGAGCACCTCGTACGGTGGTAGTTTCTCCTGGTCCGTCTGGCCCGGCCTGAGCTCCGCCGTTGGGGGTTTCACGAAGATGTTTTCCGGAATGATCTCTTTTCCTCTCCAGCTGTTGTACCATCTTCCTATTCTGTAAACGTCTGTCTTGTAAACATCCTTTATAACGGCGAATCCTCCCGCCATGTCTCCGTAGAGAGTCGCGTATCCCGTCGCCATCTCGCTTTTGTTCCCCGTCGTGAGAACGAGCCATCCGAATTTGTTGGAAAGTGCCATGAGGTAGTTTCCCCTGATTCTTGCCTGAAGGTTCTCTTCGGTTATATCTGGTTCTCTCCCGGCGAAGACGTCTTCGAGTGCTCCAAGGTAGGAGTGAAACACATCCGTGATGGGAATGATGAAAGTCTCTATGCCCAGATTTTTTGCCAGTGTTTGCGCGTCTTCGATACTTTCTTTTGAGGTGTACATGGACGGCATGAGGACACCTTTCACGTTCTCTTTTCCCAGGGCTTCTGTTGCTATGACCGCGACGAGGGAAGAGTCCATTCCCCCACTGAGCCCTATCACGACCTTTTCAAAACCGTTTTTCCTCACGTAGTCTCTCAGACCCGTGATCAGAGCCCTGAACATCTCTTCTTCTCTCACAGGAAGAGGATTCACCACCGGTTCAAAATGCCCGGATTTCTCCCGGAGATTTCCCGCTTCCACGGTTTTCACCGGATAGTTCTGAGTCTTCATGTACCTTCTTCTAGGATCTACCAGCGAGACTCTGAGGTTCTCGTCCAGATCCAGATCCACCGTGATGATCTCCTCTTCGAAGAGCTTTCCGTAGTTTATGACCTCTCCTGAAGCGTCGACCACCATGCTTCCTCCATCGAAAACGAGCTCGTCCTGACCCCCGACCATGTTGCAGTAGGCCATGGCCACGTGATAGTCGTAAGCCTTCATGGAAAGATAGTCCTTTCTCAGAACAGGTTTCCCCACGTGGTAGGGAGAAGCCGAAAGATTCGCTATGAGATGAACTCCCTCACCCAAGGAAAGCGAGGCGCTCGGTTCCACTGGATTCCAAATGTCTTCGCAGATGGTAACTCCCACTTTGATGTTGCCTATTTTCACGACGAGGAGTTCCTCTCCGGGTTTGAAGTATCTTCTCTCATCGAAAACCCCGTAGTTCGGCAGAGATATCTTCCTATACACTCCAAGGATCTCACCGCCTTTCACAACTGCGGCGGCGTTGTACGCATCCTCGTCGCTGTCTATGAAGCCCATCAAGACGGTAACACCGAGATTTCTTGTATGCTGAGCGAACTTCTGGAGGTATTTTCTGTTCTCTCTGAGGAATGAGAGCCTGAGCATGAGGTCTTCGGGAGGATAACCGGGAAGAAAGAGCTCCGGGAAGACAAGGAGATCACTTCCCCGGTCTTCCGCCACTCTGAGGGCTTCTATTGCCTTCTTCAGATTTCCCTCGAAGTCTCCAAGGGTCGGATTAAGCTGAGCCAGTGTCACTCTCAGTCTTTTCATAGGATCCCTCCATTATCCGGTACATCGAGTAGACCAGAACGACTCTCAAGAGATTCGATATTATGGAACCCAGGTACGGTATGAACCAGACGATGAACACAACGGCTGCAGCGAGGAAAACGTCCACCGTCTTTTCCCCTTTGAACACCATTCTGTAGTTCTTTTCCAGGACGCTGGAAGGAGATTCGTCTTTAGCGGAGAGCAGGGGAACAAAGAAGAGAAACATGAAGGCCACAAAACCGGGAAGGACGAACAGAGAAAAACCAGCACTTACCGTCAACCCGTAAAACGCTGAAAACACGAGAAGACTGAGAAGATTTTCTCTTCTTCTTGGAACCAGAAGTAGTCCCATCAACAATGCGAGCAGTACCTCTTCAAAGAGTTTTATGACGAAGAAATCGAAGCTCAGAAAATCGTACTTTCCGGCAAAGATGTAAAGCACTTCCGCCACAAACCCCAGAACGAGAGCCATAACGCTTATCACAGCGAGTTTTGTATTTTGAACTATCTCCCTGAATCCTTTAACGAAACTCTCGATCACACTTATCCCCCCTCACCTCCGTACTCGATTCTCCAGTCTGAGGATACCTTCCCAACGACTGTTCCATCCACTCTGGCCAGAACCTCGTCCACCTTTTGTTTTTCCACGATCAGAAACATTCCAACACCCATGTTGAAGGTGTTGACCGCTTCGTTGAAGTCTACATATTTCAATATCCAATCAACGAAGTCCCTCTTTGGTAGAGAAACGTGCGCCCCAAGCTTTCCGAGGACTCTCTTCAGCGCCCTCACCACTCCCCCGCCGGTCACGTGTGCGATCCCTTTCACCAGGTCGAACAACTCGATGACTTCTCTGTATATGCGTGTTCCTTTCAGGAGTTCAAAGGGAAGTTCCTCGATCTTTATGGATTCCTCCTTTATGATCCTTCTTATGAGTGACCAGCCGTTCGAGTGGAACCCCGATGACGGAATACCAACGATCACATCCCCTTCTTTTATCTTATCAACCGGTATCCGTTTTTCTAAAACGCCGACAGCGAACCCCACAGCGTCCCAGTCTCCACGATACACATCGGGCATCTCAGCGGTCTCACCGCCCACCAGTTTCACATCCACGCTGTCAAGGACGTTTACGAGCTCTTTTATGAACGACTCGTGTTCTTCGGAGATTCTCTCGACCCCAAGGTAGTCCAGAAAGGCCACAGGCCTCGCTCCCACGCAGACCAGATCGTTGTAGTTCATACCCACAAGGTCCTCAGCCGCGTAGCGCCAGGTCCCGTGCTTTCTGTGAAGGATGAGTTTGGTGCCGATCCCATCGGCCGTTACAACAACGGGGGGAGTTGTGATCGTGAGTATGGAAGCGTATCCCGTGGGCTCTTTCATCACCCATTCAGGAAGTTTTACAGCGCTTTTTATAGTTTTTGCGAAGCTTTCTCCCCTCTCGACATCGACTCCTGCTTCTCTGTAAGTGTATTTCATAGAGCGATATCCCTCCTGTAGGTCTTACCTTCGAAGTGGACCTTTTCCGCGAGTTCGTAAGCCTTTCTTCGTGCCTCTTCCTTCGTTTCTCCTGTTCCCATACAGTGAAGAACACGGCCGCCATTGGTCACAAGTTTTCCATCTTTCTCCGCGACTCCCGCGAAGAATATGAGACCTTCTTCGGGAAGGGTGATCTCTTTGCCCTTTTCGGGAGCGTCGGGATAGCCCCTCGCTGCGAGAACCACGTCCACGGCGAATCCACGCGGTTCCACCGGCTCCATTTTACCACCGCGGTATCCCTCGAGAACCGCGTTGACAAATCCTTCGGGATTCAACGTCACTATCACTTCTGTTTCTGGATCGCCCAGTCTCACATTGTACTCGAGTATGTAGGGATCACCATCGTGGAGCATGAGACCCAAGTAGAGGAACCCCCGGTACGCGTAGCCTTCTTTCTCCACTCCCCACAGAGTCTTATCGAAGAGCTCTTCGATCTTTTTGATCGTATCGGAAGGGATTTCTACAGGCCCCCAGGAGCCCATACCTCCCGTGTTCGGTCCCCTGTCACCGTCCATCAGTCTCTTGTAATCTCTGACGAAGGGAAGGATCACGAAATTTCTTCCATTCACAACCGCCATGGCGGAAAGCTCGTTCCCGGCGAGAAATTCATCTATCACAACAGGGCCTTTCACACCTTTTATGAGCTCTCCGATGATGAGTTTCGATCCCTTTTCGATGGTTTCTTCCTTAGAGTCGAGGATCAGAACACCCTTTCCTCGAGCGAGCCCGTCCGCCTTTATCACGTAAGGAGGAGAGAATTTTTTTATCTTCTCTCTCAATTCCTCTGGAGTTTCTGCCACTTCGAAACGAGCGGTTCTTATACCGTACTTCTTCATGAACCTTTTGGCATAGACCTTGGATCCTTCGAGCCTTGCGACCTCTTTCACCGGGCCAAAGACGTTGGATCTCCAGTTCGAGACCCCTTCTACCAGGAATTCCTCGGATCCCGGTATCACGATGTCTTCTTCTGGGATAGTTTTCAGGGTCTTTTCTCCTTCGTAAAGGTGGTTCGTTCCGTCTCTCTTTGTTCCGGCGTTTCCTGGATAGAAGTGAACTTCGTATCCCTGCTTTGCGAAAGCCCATCCTATCGCGTGTTCCCTTCCTCCAGAACCGAGTATGTGTACCCTCACCGCTTTCACCCCTCAGTGCCTGAAAACCCTGCTCGGAGCTTTGTAGAACGTGATTCCAAGTTCTCTGGCTTTTTCGATCACTTCTTCGTCTCTTATGGATCCGAGAGGAGCGACCACCGCTTTCACACCAGCCTGAGCGAGTATTTCGAGCGAGTCCGGGAACGGGAAGAACGCATCGGAAGCCGCAACCGCTCCCTTCGCTTTTTCTCCTGCCATCACGGTGGCGATCCAGGCAGCTCTCTTTCTCGAAGGCTGCCCGCTCCCTATTCCCACAGTTACACCGTCTTTTGCTATGAGAACAGCGTTGGATTTCGCTCCTTCCACAACACGGTAAGCGAATTCCAGATCCTCAAGCTCTTTTTCCGAGAGAGGCTCTCCAACTACCAGTTCAAAATTCCCTTCGGGGTACTTTCTTTCACTCAGGACGAGAGAACCGAATGCCATCTTTCCAGCCCACGAAGCGTAATCCCCAGGCTTCAAGAGACGCACTTTTTTCTTAGAGAGAACCTCGATCGCTTCCTGTGTGAAGGAAGGTGCCACGATCACCTCGAGGTACTTTTTCAATGACTTCGCAACTTCTTCGTCCATTTCGAAGTTCACGGCCAGGATCCCTCCAAAACTGGATTCGTCGTCCGCCTCGATGGCCTTCTTCACGATTTCCACTTTGTCTTCTCCTATCGCAGCACCACAGGGAGATTGGTGTTTCACCACAACCGCACCCATCCTCGGCAGGTTCTTCGCCATGAACCACGCGTTTTCCGCGTCTAAGATGTTGTTGAATGAGATTGTCTTTCCTTCGTGCAGAATCTCAAAAGCTGGTTTTCCATACACAAACGCTTTTTCGTGAGGGTTCTCTCCGTACCTCAGCTGAAGATCTTCCCTCTTGAAGGCGAGAGAAATACCCTCGACAAACTGGTTGGCCCTTATCGAATCGTACACACTGGTGAACGCAAAGGTCATTCCAGCGAGGTACTTTCTCGTCTCTTCGTCGTCTATCTCAATCGCGAGTTTGAGTGTTTCCATGTCGAAAGCGGGTTTCACCTTTTTCCAGTTTTTGGCAGCTGCTCGAAGAAGAGCGACTCCTCCTATGTCGATGTCTGGGGGTGGATATAGGTCCACAAAGACCACATCCCATCTGGGTTCCGGTCCGAGGATGCCGGCGAATATCTCCGGGTGGAGGGTCTTCACGAGCCCTCCGAGGAGATTCTCGAAACCCGTTATGGTGCTCACGTCGTTTGCTTCTATTCCGTTTGATTTCAAAAACTTGGCGGTGCCGGAGCTCGCCCAGATCTCCCAGCCTTTTTCGTGGAGTTCTCTCAGAATATCCAGATATTTTTCTTTCTCGTAGAGACTAACCAATATCCTCTTCAAGGATAACCCTCCTTCCTTCGATCTTCCATTTTCCTTCCAGTACCTTTTGAATGACGAGCGGATAATACCGATGTTCTATCTTATGGATCTCTTCTTCCAGTCTTTCGAGAGACCAGTCTTTCTTTATTTCAACTGCTTTCTGAAAGATGATGGGACCGGTGTCGACTCCCTCATCAACGAAGTGGATGGTGATTCCTGTGACCTTCACACCGTATTCGTAGGCCTTCTCGATGGCGTGGGTCCCGGGGAACGCGGGAAGAAGCGAAGGGTGGATGTTGACGATCTTCCACTTCCACCTTTCGACGATCTCCGCCGGAAGAATCCTCATGAAACCGGCGAGGACCACGAGGTCGGGATTCAACTCTTCGAGTCTTTTTTTCAGAGACTCTGCCCAGGGTTTCTCGAGCCTTTCCCAGGGGATCTGCAGTCTTTTCGCTCGCTCTATTGCGTAGCAGTTTCTGTCCACAAGGAGCATCTGGATTTCCGCACTCAATTCACCGCTTCGCGCTGCGTTCACGATCGCTTCGAAATTGCTTCCGTTTCCCGAAGCGAGAACGACTATTCGTGGAGGTACTCTCCGCTGAAGCACGCTACACACAGTTCACTCCTCCCGATGGCTCTTTTCAACCCTTCGAGTGAAAGGTAAAAGAGAGAGTCTGCGTTGACTATTTTTTTCACTTCTTCCACGGCACGTTCTCCCGCGACGAGCTCTTTCTTTCTGGCGGTATCTATTCCGTAGAAACAGGGAAAACGTACAGGTGGAGAGTGTATGCCAACGTGTACTTCCTTCGCACCCGCCTCTCTCAATATCTTCACGATGATGCCCATGGTTGTTCCTCTGACGATCGAATCATCGATTACAACAACCCTCTTTCCACTCACAACGTCTTCTATGGGGACGAGTTTTTTCTTGACGATCTTTTCCCTGTCCACCGGCATGATGAAACTTCTTCCCACATATCTGTTCCTCATGAGACCGATGTCGAGAGGTATACCCGAAGCCGAAGAAAATCCCATCGCTCCGGAAAGTCCGGAGTCCAGCACCGGAACGACCACGTCCGCTTCTATCGGGTTTTCTCTGTAGAGTTCTTCACCCATTCTGTAACGGGCTATGTGTACACTCTGATCGAGAAAGTGACTGTCCGGCCTCGCGAAATAGATGAATTCGAAGGAGCAGAACCGCTTTTCTTTTTTGGAGAACCTCACCGTTTCTGTGCCTTTGTTCGAGAAGAACACGACCGTTCCAGAGGGAACTTCTTCTATGTCTTCCACACCTATCGCTTTCAGCGCTGCGTCTTCCGATGCCACAACGATTCCATCACCGTATTTTCCATAGAACAGGGGACGGACGCCGTATGGGTCTCTCGCCGCAGCGAGGAATTCTTCGTGTAGAATGAGAAGTGAGTAGGCAAGAGGGACTTTCTTCAGCGCTTTCACTATGGACTCTTTCAGGTCACCTTCAGACATCGAGATGAGATGAAGGAAGACCTCCGAGTCGAGCGAGCTCTGGAAAACCGCTCCTTTTTCTTTGAGCATCTCTATCCACTTTTCGCCGTTGGGTATGTTTCCGTTGTGAGCGATCGCGAGCCTTCCCTTTCTCGTGAACGCCACGATTGGCTGAATGTCCTCGAGCGATCCTGCCGTGGAGTACCTTACGTGTCCAATACCCTTTTCAGCGTCTTCCCACCTGTCTTCGGTGAGAACGGTGTCTACGAGTCCTTTTCCTTTTATCGTTTTGAACCCGTCTACCACAACACCCACACTTTCCTGTCCTCTATGCTGAAGACCGAGAAGCACGTCGTGAAGGACAGAAAAGGCATCTTTCACATTCCAGACTCCTGCGATTCCGCACATATCATCACCTCGAGAGCGTTCCGATCTCCTTCACAGGAACATCGACTACGGGAGTTCTCTCAGAGAAGACGAGCACCATCTGATGCGCCGGCCTCACTTCTGGCAGTTTCACTTCGATCTTCAAGCCGTACTCTCTGAAAGTCTCCACGTGAGTTCTCGTCAGAAGCTGTGACGAAGAGAGGATGAAAGCACCTTCTTCTGAGAGTTTTCTTATGGCTCTCCAGAGTTCTTTTTCCCTTTCGAGTTCGAAGTCGTTCCATCCCACCGCGAACACCTTCGAAGGCTTCGGTTTTGCCACTTTCTGCGGGTTCACCTTCCCCAACATTCCCACAACCAGGGTGGGTGGAATGGGTTTTCCCTGGTACGTGTTGTAGAGAGAAGCGTTTCCCGATGCAACGGGAACACCCGAGAATTCACAGGCATCCTTGAGAGCAGTCATCATGGCCGAAAGTCCCACCGGGTCAACATCGGGGTCTCCGTAGTTCACACAGTTCGTTATAGCGAGAGGTTCCGCTCCCACACTGAGAGTCTTTCTCACGCTCTCGAGTACGGCTATGAAGGTTCCCCAGTAGGTGTCCTGAAGAGCCAGATCCGCTCTACTGTGTGTGACGAGGGAGTAACCCCCATCTCTCTTTATTCTCATCACGGCTGCGCCGAAACCGGGTGGCACCACAGTATCCGTTCCGACCATGTGATCGTACTGCTCGAAGACTTCCCTCGCGTTCACCTCTTCGAATTCCACCCTTTTGAACTCTGGGATCTTTCCGGGTTTGTATTCGACAATGTCTTCTTCTGGGGCGTTCGCGAGGAACTGGACGGGAACCTCCATGACGAGATCGTCTCTGTACATCACCCTGTAAACGGGTTCTTCTATCACCTCGGCAACGACATCACCGAAAAGAAGGTGCTTTCTGGCTATTTCCAGAATGCGATTCGCTTTCTGAGGTGATGTGACGACCGCCATTCTTTCCTGGCTTTCACTTATGAGGATTTCCCAGGGCTCCATATCCGGTTCTCTCAGGGGAACACGGTCCAGATGAACGATCGCTCCGAGGTTCCCCTTTGCCACGAGTTCCGATGTTGCGGACAGCACACCGCCCGCTCCCAGATCCTGAGCCCCTTCCACGAGGCCCTCTTCCACCATCTCCAGGAACGCTTCTATGAGCATCTTTTCAGCGAATGGGTCACCAACTTGGATTGAAAGCTTGGTTGCCTTATCCCCTGTGAGATCCTCCGAAGCGAAAGACGCTCCGTGGATTCCGTCTCTTCCTGTGGCTCCTCCGAAGATCACTATGACCTGTCCCGGTTTTGATGCTTTCGAATCGACCAGCATGGTGTTTCTCACAATACCCGCCGCGAGTACGTTCACAAGGGGATTGTGCGCGTAGAGAGGAGAGATCCTGAGTTCCCCACCGACCGTTGGAACGCCTATGGAGTTACCGTAATCGGCTATGCCCTCTATGATTCCGTCTATGATTCGAGACATGTGGAGTGAATCGAATATGACCGTTGGACGTGCTCCCATCGCGAGGACGTCTCTGATGATTCCACCGACACCCGTTGCTGCGCCGTTGTAAGGTTCTATCGCACTCGGGTGGTTGTGGCTCTCTATCTTGAAAGCAATGGAATAGTAATCATCCAGGTTCACCACACCTGCGTTTCCCTCAAAACCCGTTTTCGGTAATCTTCTTATGTACTTCTTCGTATGGGAGTATCCACAGTGTTCGCTCCACATGACTGAAAAAGCCTGAAGCTCGACGAAGGTGGGTTCTCTTCCAAGCTTCTCCCTGAGGATGTTCAGATATCTCAATTTCAT

Protein sequences of DBSCAN-SWA_3

>NC_009486|1497429:1515350|1499533_1500493_+|WP_004080004.1|DBSCAN-SWA
MRVIELEDLDHIREAIVILKGLEVEGANKPGEKLGFKKGKNLMSIFTCKEMDRFIRDVQERKNFSLETNAYFFELHSKRFVSLRYLPKKSLLFVNDLTEERTLSEAKLDFVTAVSHELFTPLSASKANVFLLKDIENDPEKLEILGKVERSLDRMETIIRQLKVLTMIQLRLYELKMEHIPVEEVVHMVLEELREKIESKKIKVNVFVDVETIETDRFVFHTILKNLVSNAVKYSYPDSVVEISITGERLSVKDQGIGIKEEEKSRIFERFYRGSEALKMAPGSGLGLSIVKHLCDTIGYRLEVNSQWLVGSEFIVHFK
>NC_009486|1497429:1515350|1505275_1505926_+|WP_011943946.1|DBSCAN-SWA
MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLERYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNVLKEVL
>NC_009486|1497429:1515350|1502325_1504059_-|WP_011943944.1|DBSCAN-SWA
MKTSSILVDFLKRNWHKYLLGVLSLIAVDLLQVYIPRVIGKIVDMLNTETMNFDTLKIMLFWVMAAASGMFIGRFFWRFFLGGTARKFFLETSNKMFSKLLSLTPGFFDRMKSGELMARFTNDLSLLRRVLGQGAILFFDSFIMIVMVFFFMIGNVGWKLSWISFAPLLLLAPVSMSFGRLIHRKVSEVQRSFSELSGFTEETISSVRIVKSFSVEDVSFKIFENRALKNYEGTLSAIKVSSVFRPLINLIASTAFFLALLYGGRAVINGKISLGDFIAFNSYLGMLVWPMMAYGFMVDLFQRGRAAMRRLDTIFTAQPEVEEPEKPIKIDHFESFEVRNLTYRYPGTEREVLKNVTMKINRGEMIGIAGSVGSGKSTIAKLLVKLYPVERGKIFINGVDINDVSSENIRSIVTLVPQETFLFSDTVRNNITVGLENVDEKKIEEVTKLAAVYDDIMSFPEKFDTIVGERGVTLSGGQKQRITIARALIRDFEVYIFDDCLSAVDPETEERIIDSIRKGMKGKTIVVITHRLKVLKNADRIYVLHEGRVIEEGTHEELMIRDGMYSRMYRKQLIEEG
>NC_009486|1497429:1515350|1507605_1508181_-|WP_011943948.1|DBSCAN-SWA
MIESFVKGFREIVQNTKLAVISVMALVLGFVAEVLYIFAGKYDFLSFDFFVIKLFEEVLLALLMGLLLVPRRRENLLSLLVFSAFYGLTVSAGFSLFVLPGFVAFMFLFFVPLLSAKDESPSSVLEKNYRMVFKGEKTVDVFLAAAVVFIVWFIPYLGSIISNLLRVVLVYSMYRIMEGSYEKTESDTGSA
>NC_009486|1497429:1515350|1510321_1511680_-|WP_004080014.1|DBSCAN-SWA
MKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPRWDVVFVDLYPPPDIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDDEETRKYLAGMTFAFTSVYDSIRANQFVEGISLAFKREDLQLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAENAWFMAKNLPRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVAKSLKKYLEVIVAPSFTQEAIEVLSKKKVRLLKPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH
>NC_009486|1497429:1515350|1504033_1505167_-|WP_011943945.1|DBSCAN-SWA
MVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAMRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNSR
>NC_009486|1497429:1515350|1512238_1513534_-|WP_004080018.1|DBSCAN-SWA
MCGIAGVWNVKDAFSVLHDVLLGLQHRGQESVGVVVDGFKTIKGKGLVDTVLTEDRWEDAEKGIGHVRYSTAGSLEDIQPIVAFTRKGRLAIAHNGNIPNGEKWIEMLKEKGAVFQSSLDSEVFLHLISMSEGDLKESIVKALKKVPLAYSLLILHEEFLAAARDPYGVRPLFYGKYGDGIVVASEDAALKAIGVEDIEEVPSGTVVFFSNKGTETVRFSKKEKRFCSFEFIYFARPDSHFLDQSVHIARYRMGEELYRENPIEADVVVPVLDSGLSGAMGFSSASGIPLDIGLMRNRYVGRSFIMPVDREKIVKKKLVPIEDVVSGKRVVVIDDSIVRGTTMGIIVKILREAGAKEVHVGIHSPPVRFPCFYGIDTARKKELVAGERAVEEVKKIVNADSLFYLSLEGLKRAIGRSELCVACFSGEYLHE
>NC_009486|1497429:1515350|1509115_1510309_-|WP_011943949.1|DBSCAN-SWA
MRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAGTKRDGTNHLYEGEKTLKTIPEEDIVIPGSEEFLVEGVSNWRSNVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPVEPRGFAVDVVLAARGYPDAPEKGKEITLPEEGLIFFAGVAEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIAL
>NC_009486|1497429:1515350|1508183_1509119_-|WP_004080012.1|DBSCAN-SWA
MKYTYREAGVDVERGESFAKTIKSAVKLPEWVMKEPTGYASILTITTPPVVVTADGIGTKLILHRKHGTWRYAAEDLVGMNYNDLVCVGARPVAFLDYLGVERISEEHESFIKELVNVLDSVDVKLVGGETAEMPDVYRGDWDAVGFAVGVLEKRIPVDKIKEGDVIVGIPSSGFHSNGWSLIRRIIKEESIKIEELPFELLKGTRIYREVIELFDLVKGIAHVTGGGVVRALKRVLGKLGAHVSLPKRDFVDWILKYVDFNEAVNTFNMGVGMFLIVEKQKVDEVLARVDGTVVGKVSSDWRIEYGGEGG
>NC_009486|1497429:1515350|1511660_1512278_-|WP_048810886.1|DBSCAN-SWA
MCSVLQRRVPPRIVVLASGNGSNFEAIVNAARSGELSAEIQMLLVDRNCYAIERAKRLQIPWERLEKPWAESLKKRLEELNPDLVVLAGFMRILPAEIVERWKWKIVNIHPSLLPAFPGTHAIEKAYEYGVKVTGITIHFVDEGVDTGPIIFQKAVEIKKDWSLERLEEEIHKIEHRYYPLVIQKVLEGKWKIEGRRVILEEDIG
>NC_009486|1497429:1515350|1498199_1498898_+|WP_004080001.1|DBSCAN-SWA
MVDHVHFERELTLLKSDVSKMLFLVSESLNDAIESLETMNETLARKVLESDDMIDELNREIEEKAYQIIARYNPILKQLRYIITILKFSNDLERIGDLSCNIAEKCLFLSEEKIKFEMLKELKDMFGSTLKVVQDAFKAFVEEDVDLAFRLWKFDDVIDEMEKKIRRIVVERIREGNISAELALVYILIARDLERVGDHANNLCEEVIYIETGKNMKEFLRGVESGSEGADS
>NC_009486|1497429:1515350|1497429_1498185_+|WP_004079999.1|DBSCAN-SWA
MEPIIEIENFSAYYGEKIAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHLPGFRVEGKIYFKGQDIYDPQLDVTEYRKRVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHILDRIVEESLKKAALWDEVKSELNKSGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNRLTEEYLTGKIG
>NC_009486|1497429:1515350|1505909_1507640_-|WP_011943947.1|DBSCAN-SWA
MKRLRVTLAQLNPTLGDFEGNLKKAIEALRVAEDRGSDLLVFPELFLPGYPPEDLMLRLSFLRENRKYLQKFAQHTRNLGVTVLMGFIDSDEDAYNAAAVVKGGEILGVYRKISLPNYGVFDERRYFKPGEELLVVKIGNIKVGVTICEDIWNPVEPSASLSLGEGVHLIANLSASPYHVGKPVLRKDYLSMKAYDYHVAMAYCNMVGGQDELVFDGGSMVVDASGEVINYGKLFEEEIITVDLDLDENLRVSLVDPRRRYMKTQNYPVKTVEAGNLREKSGHFEPVVNPLPVREEEMFRALITGLRDYVRKNGFEKVVIGLSGGMDSSLVAVIATEALGKENVKGVLMPSMYTSKESIEDAQTLAKNLGIETFIIPITDVFHSYLGALEDVFAGREPDITEENLQARIRGNYLMALSNKFGWLVLTTGNKSEMATGYATLYGDMAGGFAVIKDVYKTDVYRIGRWYNSWRGKEIIPENIFVKPPTAELRPGQTDQEKLPPYEVLDEILRLYIEEGLDPEEIASKGFDRKTVLDVTEMIRKNEYKRKQAAIGVKISTRAFGKDWRMPITNRFKEPL
>NC_009486|1497429:1515350|1498872_1499553_+|WP_004080003.1|DBSCAN-SWA
MGVKVLIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPDGVAMDEIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKEQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWGDDYVSDRVVDVHISAIRSKIGKGWIKTVRGLGYKFSTRGDEGDRA
>NC_009486|1497429:1515350|1513538_1515350_-|WP_148186823.1|DBSCAN-SWA
MKLRYLNILREKLGREPTFVELQAFSVMWSEHCGYSHTKKYIRRLPKTGFEGNAGVVNLDDYYSIAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTVIFDSLHMSRIIDGIIEGIADYGNSIGVPTVGGELRISPLYAHNPLVNVLAAGIVRNTMLVDSKASKPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLSIQVGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKANRILEIARKHLLFGDVVAEVIEEPVYRVMYRDDLVMEVPVQFLANAPEEDIVEYKPGKIPEFKRVEFEEVNAREVFEQYDHMVGTDTVVPPGFGAAVMRIKRDGGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGLSAMMTALKDACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKPKPSKVFAVGWNDFELEREKELWRAIRKLSEEGAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVDVPVKEIGTLSR
>NC_009486|1497429:1515350|1500485_1502321_-|WP_011943943.1|DBSCAN-SWA
MSGRKIGVVTGIFQSSPYEFFVRMTAEKPGEAYKVFAQIEDVVKVEYLTGYGTVVTYGMIVDIQNRWDGDLRNGYEEEVALEKLKPAYPIYIAKVKVTRSFLKEGDKLLEDAPEIPPNIGSPVFLVGDEEIDIALGFDELKRKNVALPVGLLKNGRPAYLDLRYILGDNGAHINVSGQSGVAAKTSYTTFLVKSMIETSSKNDGDLMRELREARYIIFNVKGESLLFLDRISKEWYSEREKWDEMYRVLGIEPKPFENVAFYAPSREKGAYIPDVNKRLIGVNVYGWDVFDIVEMNLLELMFDPDEMTRNQNFQLAVWSLQEHLSQRMEEMYQEFLKEGYIVDRKKLPSEALREVVMKKGEVVDLPLDLDSLIKDLGEGGRTREYLLGEHVQKQTIGMLIRRLKAAQKMDFDRLWVKPPLKVEPWQTNYRIDWNVPGRVTVIDISKLRERAQAFVVGAILSEVMREKERNSGFTQPVFIFLDELNKYAPRHGGGALANIFRDVAERGRSFRVILIGAEQTASEVDYRVITQAATVVVGRQKGAELIKPEYSHLTEHYKRKAALLRQGEVIIDQPFLNLPLTVKFPLPAWCTREGGWHNPEGKTWEEEEFII

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004079999.1|1497429_1498185_+	phosphate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.5e-17	28.4
WP_004080001.1|1498199_1498898_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_004080003.1|1498872_1499553_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-28	32.6
WP_004080004.1|1499533_1500493_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.6e-16	28.7
WP_011943943.1|1500485_1502321_-	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	1.6e-30	28.0
WP_011943944.1|1502325_1504059_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.6e-42	27.3
WP_011943945.1|1504033_1505167_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_011943946.1|1505275_1505926_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.3e-10	26.1
WP_011943947.1|1505909_1507640_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	6.3e-93	36.4
WP_011943948.1|1507605_1508181_-	hypothetical protein	NA	NA	NA	NA
WP_004080012.1|1508183_1509119_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HQK7	Synechococcus_phage	1.4e-38	35.5
WP_011943949.1|1509115_1510309_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_004080014.1|1510321_1511680_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	1.2e-41	39.1
WP_048810886.1|1511660_1512278_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.9e-26	39.5
WP_004080018.1|1512238_1513534_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.6e-46	32.5
WP_148186823.1|1513538_1515350_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-78	33.6

Sequences of DBSCAN-SWA_4

Nucleotide sequences of DBSCAN-SWA_4

>NC_009486|1636948:1645667|DBSCAN-SWA
TTCATGATCTCTCCTTCAAAAGCTTTTCGTAGGCGATTCTTGCGGCCTCCTTTTCGGCTTCCTTCTTGGTTCTGCCTCTGCCCATGGCGATAGACTTTCCATCTACTCTCACTTCCACAACGAAAATCCTGTCACCGTCGTTTTTTTCCGTTCTCACCAGTACGTATTCCGGAGGCACTTTGTGTTCGCTCTGGACTATTTCCTGGAGAGCCGTTTTGTAGTCGAAGAGCATTTCACCCCTCATGATCTTTTCTATGTAGAGCTCAAATTCCTCTTCAAAGAGCTCCTTTATCTTATGATAGCCTTGATCGAGGTATATGGCGGCCAGAAGCGCTTCAAACGCGTCGGCAAGTATGGAATCTCTATCACGTCCTCCGGTTTTTTCCTCTCCTTTTCCGAGAAACAGAAATTTACCAAGGTTCAGCTCCCTGGAAACCATAGCGAGCACTTCCTCACTCGCCGCGGCGGATTTCGCTCGGGCCAGGTCTCCCACTTCCGCTTCCGGATATTTCTTGTAGAGTATTTCACACACGAAGAGCTCCAGAACGGCGTCCCCCAGAAACTCCAGCTTTTCGTTCGATTCCACGTCTTTCCTCCCCGCTTGATTCTGCTCGTTCGCGTAAGAACTGTGGCATAGAGCCCGAAAGAGAAGTTCTTCGTTCTTGAAGTTGATTCCTGTTTTTTTCTGAAACTCCTCCACGATCTTTCTCTCACTCTCGTTCAATGAGTATCACCTCTTTCAAAACCTTACCCTCCAGCGAACAGAGGTAGAATTTTTCCTCATCCGTATCGATGATACCAAAGGTCGGACCAGTCTCAGATTTTGGAAGAGAAACCGATCCCGGATTCAAAAGTAACACCCCTCCACATCTTTCTGCCATTGGGATATGAGTGTGACCGAAAAGAACCACGTTGCATCTATGTACCTGTGCCAGGCTCACAGGATCTCCTCCTCCGTATTCGAACTGATCACCATGAACAAGGAGCATCTTCACATCTCCCAGGAATTCCATTCCGATTCTGGGCATCTCCGGAACTTCCAGAACCCTCACGTCCACATCCGCATCACAGTTTCCGCGTATGTATTTCACGCGGTGTCTTTTCAAGAGTGATGCGAGTTCCTTTGGACTGTACCCCTCGGGAAGAGGATTCCTGGGACCGTGGTAGAGAACATCACCAAGATGCCAGATTTCATCGAAACTTCCCGCACTCTCCAAAGCCTTCTCTGTGTGCGACAGTGAACCGTGTGTATCCGAGATCACAAGAATCCTCAAAGTCAACCCCTCCTGATAACGAACTTTCCCGATAGAACGGAAATAGAAAACAAAACGGTTGTCCAGAGCAAAACAACAAAAATCGAGCGATTATCGACGGTGTGTTCCAGTTGATACACCCTGAGGGCGTACATGGTTCTGAACACTGGAGTTGACATAGCGATTCTTCGAAGGATATCTGGCAAATTGCTTATTGGAATGGCGAACCCGCTTGAGAACAGGGATATTCCTATCACAGAAACACCCAGTATGTTTGCAAGACTCTTGTCGGGAGAAATGGAAGAAACCAGAAAACCCACAGACGTGTGAAGAAGAGCATTGAGAAGAATGAGTACAGATGTAACGAAGAAACCCAGACTGTCTCCAATCAATATCGCCGTCAGGGTGTAGGCTATGAAAGAAACGGAGGCTCCGATAAAGGTGTAGGCAAGAATCTTTCCACAGGCGTATTTCCATGCCGGAAGGTTGTACACGAGGAACATCTCGTGCAGGTTCTTCTCTCTGTCGAGGAAGGTGGAAACACTCGCCAGTGATACGGTTATCAAAATCGCCGTGAAAAAGACAACGAACGGAGAGATGAGATCGGAAAACCTGAGTTCTGAATTTTTCAATGTCAATCTGGGCACAGGATAATCGGACTCCGTGAATATGTACCGGAGCACCTTGGGATCAAAGAAAGCACTCCCCTGGAAATCTGCCAGAACGGAATCGAGAACGTTGTATATCGCAGCGGAGAGGTGAAGATCGATTGGACTCGGGATGAAGATCATCTGGGTTGGCTGTTTGGAATACAGTTTTGCCGCGAAGCCCTTTGGAATCACTATGACCGCGTTCAGCTTTCCTTCCTTCAGAAGTTCCTCGTAGTTTTGATCGACTTTCACTATGTTTTCCTGCCTCAGGATGGTTCCAACGAATCTCATGACAAGGGAAGACCAAATACTGTTGTCTTCGTTGTATATTCCGAGCTTCATCGTTTGAAGGTTGTATCCCTGCATGAAGAGAAGAGAGATCAACACAACCAGAACGGGTGAGGCGATGATCATCATCAGTGAAGATCTTTTCTTCAAAATCCTCTTCAGTTCCACGACGGTTATCCTAAACATCGAGTTTCCACCTTCTTTCAACTTCCCTCACCACGTCTCTGTGGATTTCCTCTATGGAGCGTTTTCCATCCAGCACCACGATTCTTTCGGGATGCTCTTTGGCAAGCACAAGGTAGCCTTCCCTCACACGTTCGAGGAACTCTCTTTTTTCAAAGCGATTGAGTTCTCCTTTTCTATTGAGGGCCGTTTCGACGTCCACGTCTATGTAGAAGGTCAGGTCAGGAACCAGACTATCCGTGGCAAAGTCGTTCAGCTTCTCCACGATTTCTTTTCCCAGATTTCTTCCAAAACCCTGGTATGCAACACTGGAGTCTGTGTATCTGTCGAGAAGAACGACGTATCCTTCGGAAAGGTACCGTTTTATTTCCATCACAAGAAGGTTTCTTGAAGCGAGAAACAGGAAGAGCTCAGCTTTGGGAGTCATTTCTTCCTTCAGAAGAAGCTTCCTGATCTTCTCCCCCGTTTCCGTTCCGCCCGGCTCCCTCTTCAGGATCACTCTCTTTCCTCTCTTCTCCAGGTATCGAGCCAGAAGCTTGATCTGTGTGCTCTTCCCAGATCCGTCTATTCCTTCGAACGTTATGAACATTCCTTCCCCTCCTGGTCATAAGGATGAAGGCAATGAGATTGTTGGAGATGTGATACAGAACAGCGGGAAACAGAGATCCACTGACAGACGCACTGTGGGCGAATATGAGCGCAACGACAAATCTGTAAATGAGGTTCGCAAAGGAAAATCTTTCAAAGCCCACAATCACGTTGAAGAGGTGAAGGAGAGAAAAAACGAGAGCGTTGGTCCATATGTCGTTTCCGTTCAGTTTCAAAAAAACTCCCCTGAAGAACAACTCCTCCGAGAAGGGAGACAGAAACACCACCGAAACCATCACGATGAACCGGTTCATGAAAGGTGGAAATCGAGCTTCGCTACTTCCTAAGAAAAACACGTTCAAGAAGAGGAGAATCAGGAACCAGTGTAGATCGGCGAAACTTATTCTGAACGATGGAACGTATCGGAAAGCCACACACACCGTCACAGCACCGGCGAGTCCCAGCAGGGACTGATAAAAGATCGCCTTCTCGAATCGGCGAATCCTGAAGAGATTTATCGAAAACATGAACGCGAGATACAAAGCAAGGGCTATTATCGAGTAGAGAACGCTCACGGCTTCACCTCACAACAGCGTTGCTATCATAACTGCCTTTATGGTGTGCTTTCTGTTCTCCGCCTCGTCCCAGACCCTGCTCTGTTTTCCTTCGATCACTTCGTAGGTGACTTCCTGACCTTTCACCGCCGGAAGACAATGCATGAAGATCGTTTCTGGTTTACCTGTCATCTCCATCACTCTTTTATTCACCTGATAAGGCTTCAAAAGGGATATTCTCTCCTTTTCTTTGTCTTCTTCCCCCATGGATGCCCACACGTCCGTGTAAACGACATCGGCACCTGCGAGTGCCTCTTCCAAATTTGATGTGAAAGAAACGCTTGCACTGGTTTCCCTCGCTATCTCCTGACACCTTTCGAATATGTCAGGTCTGGGCTTGAGTTCTTCGGGACCACACGCTACAAAATTCATGCCCATCTTCGCACAGGCGATCATGAGGGAGGTCGCAACGTTGTTTCTGGTGTCCCCCATGAAAACAACCTTTACACCCTTCAATCTGCCGAAATTCTCCTCTATGGTCATCAGGTCGGCGAGCGCCTGTGTCGGGTGAAAGTCGTCGGTGAGTCCGTTGTACACGGGAACACCGGAGTACTCAGCCAGCTTTTCCACAGTTTCCTGTTTGTAGCCCCTGAACATGATGGCGTCCACCATTCTTCCAAGAACGCGCGCGGTATCCTCGAGTGATTCTTTCGTTCCAAGGTGTATGTCGTTCGGTGAGAGAAAGATCGCATGTCCCCCTTCTTCCGCAAAAGCGGTTTCAAAGGCGAGTCTCGTTCTTGTCGATCTCTTCTCGAAGATCATGGCGAGTGTCATCCCTTTGAACCTTTCGGTTCTCAGTCTGGACCTGCTCTCCATCTTCACCTGCTTTGAGATATCGAGCAGGTATCTGATCTCTTCAGAAGAAAAATCAAGAAGAGTGAGAAGAGATCTCCCTTTCATGTTCACAGACACACTTCACACCTCCACTATATCTTCGAGTTTTTCACCCGTGGATATGTACTTTACCGGTCTTCCTGTCTCTCTTTCTATGAAATCAACAAAGCGCTCGAAGTTCTTGTCTTCCAGAGATTTCCAGCCATCGAAGATTTCGTAGATGGGTTCTTTCTTTTCCAGATCTCTGAGTGAAGCGAGATCTCTCCCATCGGAGTAGCGCACACAGACCTTGATCTTTTCAAAACCGTTCAGTACATCTGCTTTGGTCATGATCAGAGAATCGACCCCGGCGATCTCAATGGCGTACCTGAGAAGTGGCAGATCGAGCCAGCCGCATCTTCTTGGCCGACCGGTCGTGGAACCGTATTCGTGCCCCGCTTTTCTCAACTTCTCTCCTTCTTCTCCTGTGAGTTCTGTCGGGAAAGGACCTTCTCCAACTCGTGTTGTGTACGCCTTGAAGACGCCTAAAACCTCATCTACTTCCATAGGAAAGCCCATTCCCGCACTCACACCCGAGGAGGAACAGTTCATACTCGTGACATACGGGTACGTTCCCACGTCCAGGTCCAGAAGGACCCCCTGTGTTCCTTCGAAGAGAACGCTCTTCTTTTCGAGGATCTTTTTCAACTGGATCGGTGATACGACGAAGTCTTTTATCGTCTCATAGAAGGCGGAAAGATCCTCCATCATTTTTTCTGTGTCGAAATCCACCCCGTAGATCTTCTTCAAAGAGAGGTTCTTTTCGAGGAAATATCTGAGTTTTTCTTCGTTGCCGAGCTCCGCGACTCTCACGTTCACCCTCATAACCCTGTCGGCACAGGCGGGACCTATCCCTCTCTTTGTGGTGCCTATCTTCAACACTTCGTCTATTATCCTGTCCATTTCTTTGTGCACTGGAAGAACTACGTGAGCACTTTCGGAGATGAAGATTTCACCCGAATAATCGGGAAATTTCTCTTTCAATTCCCTCAGTTCTTCTGTCAGCACCTGAGGATCCAAAAGCACTCCGCTTCCTATAGCGATTCCTTTGTTTTTCGTGAAGTCGGCCGAGGGAAGGAGGTGGTGTATCACCTTGAAATCTCCGTAATTCACGGTGTGCCCGGCATTCGCTCCACCTGAGAATCTCGCCACGATATCGTGGTATCTGGAAAGATAAGTTACCACCTTGCCTTTTCCTTCGTCTCCCCATTGAAGTCCAACCACAACACGGTTCATTCGCTTCACTCCTTTTCAAAACGTTCGAAGATGTGATCCACGTGTTTCAGATAATAAGAGGCATCGAAGAGTTCCTCGAGTTCTTCCTTAGTAACCAGTTTCTTAACGTCTTCATCCTCGAGGAGGTACTCGAGGAAGTGTTTTTCGGAGTTCCAGGTTTTCAGAGCGTTTCTCTGGACGATATCGTACGCCTCTTTCCTCGTGAGTCCTTTCTCTATGAGTTTCAACAGGACTCTCTGGGAAAACACGAGTCCTTTTGTGCGATCTATGTTCTTCTTCATTCTTTCTTCGTTCACCTTCATGTTCTTCACCACGTTTGTGGCCGTGACGATCATGTAGTAAAGAGTCTGCGTAGCGTCGGGAAAAACGTATCTTTCAACGGAGGAGTGTGAAATGTCCCTCTCGTGCCAGAGTGCGATGTTTTCAAGGGAAGGATCGACGTACGCCCTCATCATTCTGGAAAGTCCCGTGAGTCGCTCGCAGGTGATAGGATTCTTCTTGTGGGGCATGGCACTCGAACCCCTCTGGCCTTCCCTGAACGGTTCTTCCACCTCGAGCACTTCCGTTCTTTGGAGGTGTCTGATCTCTACAGCGATTCTTTCTATCCCCGCCGCCACGATCGCGAGTGTGGACAGATAGAAGGCGTGGCGGTCTCTCGGAACAACCTGAGTGGAGACGGGTTCAGGTTTCAAACCCAGGTACGAAAGCGCTTTCTCCTCCACCTCCGGTGGTACGTTTGCGTAGTTCCCAACGGCACCGCTGATCTTACCGTAAGAAACTTCCTCTATTGCCCTCTCGAGGCGCTGGATGTTTCTTTTCATCTCGGAGTACCACCCGAGGACTTTCAAGCCAAAGGAAGTGGGTTCCGCGTGGACACCATGTGTTCTTCCGATGGTGGGAGTGTGTTTGTATCGATTTGCAACTTCCCAGAGCACGTCACAGAATTCCCTGAGGGATTCTAACAGGATCTTCCCTGCTTCCACGAGAGCGAGGGAATTTGCGGTGTCGAGAACATCTGAAGAGGTGAGACCGTAGTGGAAGAATCTCGAGTCTTCTCCTATCATCGAGCCGATTCCTTCGACGAACGCCACCACATCGTGGTTCGTTCTCTCTTCTATCTTTTTGAACAGTTCCACATCTATCTTAGCTTTGTTCCTTATCCTCTCTGTCACTCCCTTCGGAATCATTCCCAGCTCTTCGTACGCCTTCGTCACTGCCAGTTCCACTTCCAGCCATCTTCTGTACTTCGCTTCCTCCGTCCAGAGATCCTTCATCGGTGACAGCGAATACCTTTCTACCATCTTTTTCCCTCCCAAACAGATCTCTTACGAACACGAGCGCAACAACAGGAAAAACAAGATAAGAAGCCGTTGGATATCTAACGCTCGCTACCTTCCACAACGCCATTGCTACGAGAAACCAGAAAAGCAATTTGAAAGGTACGTTCACGGCTTTTTTCTTTGCAAAACCGGTGACGACCAGAGGAAAGAAGGACAGCACCAGAAACAACTCTGCTCGATCGTAATTTGTTCCCTTCAAATATTCGAACCCCTCGAGGACGAGGATAAAGATCAAACTCACATGGAACAGAGTCTTTTCTCTCTCACTTCTGGTGAAGAAGAAAAAAACAGAGGCGACAAGAGCGAGTATCGATACAAAAGCACTGTCTTTCCATGAGAGAACAGCGAAGATCAGAGAAAGTCCCGATCCTAACATCATCGATCCCCTTTCACGAGAGTCACAGCAGTTTCCACATGGTAAGTCTGGGGAAACATGTCGAAGGGCTTCACCCTGAGAATAGAGTAGCCGTTCTCCACCAACACCTTGAGATCCCTCGCCAGAGTGGAAGGCTCACAGGAAACGTAAACGATCCTTTCGGGTGAAAGTCTCACTATTTCTTTCACCACTTCTGGACCCGCACCTGATCTCGGTGGGTCCAGGATTATTCTGTCTGCCCTTCCGCTGTAGTTTTTCAGGAAATCCAGTACATCCTGTTCCACGTATTCTATGTTCCTTCTGCTGTTTATGTTCGCGTTAGCCTTTCCAGCCTTCACAGCGACCCTGCTGGATTCAACAGAGATCACCCTCGCTGCTGAGAAGGAAGCCCTCACAGAAAACGTTCCAATACCCGCGTACAGATCGAGCAATACTTCGTTACCCTGAAGTGCCAGTTCCCTGTACACATGATCTATCAGTTTGGATGTGACGGAGTAGTTACTCTGAAAGAAGGCGGTCGGTGGAATTTGAAACCTCTCCCAGTCGAACTCTTCTACAATTACACCCTCACCATAGAGGGTTCTGTACGGTCCCCTCAGAACCACAGAGTCTTTCGAATTCATCACATGGATGATGGAGTGGATCTTTGGAAATCTCTTCAACACAGCTCGAACCAGATCCTTTTCCCAGGGAAAGGATTCTGTCTTCGTCACGAAAATCACCATGAACTGGTCCGTGCTGAATGCGTACCTGATCACGAGGTGCTTGAGTACTCCCTTTTTCGTTTCCCAGTTGTAAACAGGAACGTTGAGTACTTGAACGGCCTCTTTGACGGTGTTCAGAATCTCACCCGTGCCTTCCGGTGCCACTTCACAGTCTTTTATATCGATCACAAAATCGGAGTCTCTCTTTTTCAACCCTAATTTTCTTCCCTGGAAATGAAACTCCATTTTCGTCCTGTAATGAAAAACAAGGTCACTCGGTTCCACATCTTCCACTTCTGCCTTTAGATTTGAGCGTTCGAAAAGATCAAGCAATACCTCCTTTTTGTATCGGAGCTGGGTTTCATATTTCACATCCATCCAGTGACAGCCACCGCATCTTCCGAAGTACCTGCAGGGTGGTTTCGTTCGATCTTCAGATTCTTTCAGAAGGGAAACTACCCTTCCAAAAGAAAAATCCCTTTTCTCTCTGTAAGTCTTTATCAGAACTTCCTCACCGGGATACGCTCCTTCGACGAGAACCACCTTGCCGTTCGAAAGATGGGCAAGGCCGTAGCCTCCGTTGACCATTTTTTGTATCTTCACCTGCTCCAGCAT

Protein sequences of DBSCAN-SWA_4

>NC_009486|1636948:1645667|1640493_1641435_-|WP_011944060.1|DBSCAN-SWA
MSVNMKGRSLLTLLDFSSEEIRYLLDISKQVKMESRSRLRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHAIFLSPNDIHLGTKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYNGLTDDFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRPDIFERCQEIARETSASVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERISLLKPYQVNKRVMEMTGKPETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATLL
>NC_009486|1636948:1645667|1641438_1642632_-|WP_011944061.1|DBSCAN-SWA
MNRVVVGLQWGDEGKGKVVTYLSRYHDIVARFSGGANAGHTVNYGDFKVIHHLLPSADFTKNKGIAIGSGVLLDPQVLTEELRELKEKFPDYSGEIFISESAHVVLPVHKEMDRIIDEVLKIGTTKRGIGPACADRVMRVNVRVAELGNEEKLRYFLEKNLSLKKIYGVDFDTEKMMEDLSAFYETIKDFVVSPIQLKKILEKKSVLFEGTQGVLLDLDVGTYPYVTSMNCSSSGVSAGMGFPMEVDEVLGVFKAYTTRVGEGPFPTELTGEEGEKLRKAGHEYGSTTGRPRRCGWLDLPLLRYAIEIAGVDSLIMTKADVLNGFEKIKVCVRYSDGRDLASLRDLEKKEPIYEIFDGWKSLEDKNFERFVDFIERETGRPVKYISTGEKLEDIVEV
>NC_009486|1636948:1645667|1637657_1638221_-|WP_011944057.1|DBSCAN-SWA
MRILVISDTHGSLSHTEKALESAGSFDEIWHLGDVLYHGPRNPLPEGYSPKELASLLKRHRVKYIRGNCDADVDVRVLEVPEMPRIGMEFLGDVKMLLVHGDQFEYGGGDPVSLAQVHRCNVVLFGHTHIPMAERCGGVLLLNPGSVSLPKSETGPTFGIIDTDEEKFYLCSLEGKVLKEVILIERE
>NC_009486|1636948:1645667|1644347_1645667_-|WP_011944063.1|DBSCAN-SWA
MLEQVKIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGRVVSLLKESEDRTKPPCRYFGRCGGCHWMDVKYETQLRYKKEVLLDLFERSNLKAEVEDVEPSDLVFHYRTKMEFHFQGRKLGLKKRDSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETKKGVLKHLVIRYAFSTDQFMVIFVTKTESFPWEKDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYRTLYGEGVIVEEFDWERFQIPPTAFFQSNYSVTSKLIDHVYRELALQGNEVLLDLYAGIGTFSVRASFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNYSGRADRIILDPPRSGAGPEVVKEIVRLSPERIVYVSCEPSTLARDLKVLVENGYSILRVKPFDMFPQTYHVETAVTLVKGDR
>NC_009486|1636948:1645667|1639316_1639910_-|WP_011944059.1|DBSCAN-SWA
MFITFEGIDGSGKSTQIKLLARYLEKRGKRVILKREPGGTETGEKIRKLLLKEEMTPKAELFLFLASRNLLVMEIKRYLSEGYVVLLDRYTDSSVAYQGFGRNLGKEIVEKLNDFATDSLVPDLTFYIDVDVETALNRKGELNRFEKREFLERVREGYLVLAKEHPERIVVLDGKRSIEEIHRDVVREVERRWKLDV
>NC_009486|1636948:1645667|1642637_1643933_-|WP_011944062.1|DBSCAN-SWA
MVERYSLSPMKDLWTEEAKYRRWLEVELAVTKAYEELGMIPKGVTERIRNKAKIDVELFKKIEERTNHDVVAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLREFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNIQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFREGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVKNMKVNEERMKKNIDRTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEDVKKLVTKEELEELFDASYYLKHVDHIFERFEKE
>NC_009486|1636948:1645667|1636948_1637671_-|WP_011944056.1|DBSCAN-SWA
MNESERKIVEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYVLVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKLLKERS
>NC_009486|1636948:1645667|1638223_1639324_-|WP_011944058.1|DBSCAN-SWA
MFRITVVELKRILKKRSSLMMIIASPVLVVLISLLFMQGYNLQTMKLGIYNEDNSIWSSLVMRFVGTILRQENIVKVDQNYEELLKEGKLNAVIVIPKGFAAKLYSKQPTQMIFIPSPIDLHLSAAIYNVLDSVLADFQGSAFFDPKVLRYIFTESDYPVPRLTLKNSELRFSDLISPFVVFFTAILITVSLASVSTFLDREKNLHEMFLVYNLPAWKYACGKILAYTFIGASVSFIAYTLTAILIGDSLGFFVTSVLILLNALLHTSVGFLVSSISPDKSLANILGVSVIGISLFSSGFAIPISNLPDILRRIAMSTPVFRTMYALRVYQLEHTVDNRSIFVVLLWTTVLFSISVLSGKFVIRRG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011944056.1|1636948_1637671_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	1.4e-17	27.3
WP_011944057.1|1637657_1638221_-	phosphodiesterase	NA	NA	NA	NA
WP_011944058.1|1638223_1639324_-	ABC transporter permease	NA	NA	NA	NA
WP_011944059.1|1639316_1639910_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.3e-33	41.4
WP_011944060.1|1640493_1641435_-	ornithine carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.4e-22	30.2
WP_011944061.1|1641438_1642632_-	adenylosuccinate synthase	L7Y4J5	Megavirus	1.6e-50	33.0
WP_011944062.1|1642637_1643933_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.5e-19	30.6
WP_011944063.1|1644347_1645667_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.9e-49	27.7