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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009487 Staphylococcus aureus subsp. aureus JH9, complete sequence 11 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 9 3 9 2
NC_009477 Staphylococcus aureus subsp. aureus JH9 plasmid pSJH901, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NC_009487
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_1 463474-463575 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_2 819211-819293 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_3 860158-860236 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_4 865613-865882 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_5 908840-908921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_6 1743364-1743448 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_7 1777795-1777942 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_8 2176607-2176688 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_9 2305863-2305943 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_10 2318184-2318269 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009487_11 2426223-2426303 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 182257-182278 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 305332-305353 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 692146-692167 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 818252-818273 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 908913-908934 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1473309-1473330 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1561862-1561883 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1743440-1743461 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1757974-1757995 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 2075725-2075746 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 182257-182278 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 305332-305353 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 692146-692167 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 818252-818273 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 908913-908934 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1473309-1473330 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1561862-1561883 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1743440-1743461 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1757974-1757995 0 1.0
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 2075725-2075746 0 1.0
NC_009487_8 8.1|2176631|34|NC_009487|CRISPRCasFinder 2176631-2176664 34 NC_009487.1 860157-860190 0 1.0
NC_009487_8 8.1|2176631|34|NC_009487|CRISPRCasFinder 2176631-2176664 34 NC_009487.1 1261662-1261695 0 1.0
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1023234-1023255 1 0.955
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1777702-1777723 1 0.955
NC_009487_4 4.1|865649|22|NC_009487|CRT 865649-865670 22 NC_009487.1 1777935-1777956 1 0.955
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 819202-819224 1 0.957
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 819480-819502 1 0.957
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 1473425-1473447 1 0.957
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 2075783-2075805 1 0.957
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 2415394-2415416 1 0.957
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1023234-1023255 1 0.955
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1777702-1777723 1 0.955
NC_009487_4 4.3|865766|22|NC_009487|CRT 865766-865787 22 NC_009487.1 1777935-1777956 1 0.955
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 819202-819224 1 0.957
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 819480-819502 1 0.957
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 1473425-1473447 1 0.957
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 2075783-2075805 1 0.957
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 2415394-2415416 1 0.957
NC_009487_5 5.1|908864|34|NC_009487|CRISPRCasFinder 908864-908897 34 NC_009487.1 1473405-1473438 1 0.971
NC_009487_6 6.1|1743390|33|NC_009487|CRISPRCasFinder 1743390-1743422 33 NC_009487.1 1473406-1473438 1 0.97
NC_009487_8 8.1|2176631|34|NC_009487|CRISPRCasFinder 2176631-2176664 34 NC_009487.1 1870075-1870108 1 0.971
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 872901-872931 1 0.968
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 872957-872987 1 0.968
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 1561745-1561767 2 0.913
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 NC_009487.1 2176688-2176710 2 0.913
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 1561745-1561767 2 0.913
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 NC_009487.1 2176688-2176710 2 0.913
NC_009487_7 7.2|1777902|22|NC_009487|PILER-CR 1777902-1777923 22 NC_009487.1 1261784-1261805 2 0.909
NC_009487_7 7.2|1777902|22|NC_009487|PILER-CR 1777902-1777923 22 NC_009487.1 2176576-2176597 2 0.909
NC_009487_7 7.2|1777902|22|NC_009487|PILER-CR 1777902-1777923 22 NC_009487.1 2176693-2176714 2 0.909
NC_009487_8 8.1|2176631|34|NC_009487|CRISPRCasFinder 2176631-2176664 34 NC_009487.1 1477779-1477812 2 0.941
NC_009487_8 8.1|2176631|34|NC_009487|CRISPRCasFinder 2176631-2176664 34 NC_009487.1 2866044-2866077 2 0.941
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 83614-83644 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 424736-424766 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 692201-692231 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 909176-909206 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1164735-1164765 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1267263-1267293 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1473364-1473394 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1561798-1561828 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1561914-1561944 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 1758028-1758058 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 2415447-2415477 2 0.935
NC_009487_11 11.1|2426248|31|NC_009487|CRISPRCasFinder 2426248-2426278 31 NC_009487.1 2592445-2592475 2 0.935

1. spacer 4.1|865649|22|NC_009487|CRT matches to position: 182257-182278, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 4.1|865649|22|NC_009487|CRT matches to position: 305332-305353, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|865649|22|NC_009487|CRT matches to position: 692146-692167, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|865649|22|NC_009487|CRT matches to position: 818252-818273, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|865649|22|NC_009487|CRT matches to position: 908913-908934, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1473309-1473330, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1561862-1561883, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1743440-1743461, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1757974-1757995, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|865649|22|NC_009487|CRT matches to position: 2075725-2075746, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.3|865766|22|NC_009487|CRT matches to position: 182257-182278, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.3|865766|22|NC_009487|CRT matches to position: 305332-305353, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|865766|22|NC_009487|CRT matches to position: 692146-692167, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|865766|22|NC_009487|CRT matches to position: 818252-818273, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|865766|22|NC_009487|CRT matches to position: 908913-908934, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1473309-1473330, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1561862-1561883, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1743440-1743461, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1757974-1757995, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|865766|22|NC_009487|CRT matches to position: 2075725-2075746, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 8.1|2176631|34|NC_009487|CRISPRCasFinder matches to position: 860157-860190, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

22. spacer 8.1|2176631|34|NC_009487|CRISPRCasFinder matches to position: 1261662-1261695, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

23. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1023234-1023255, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

24. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1777702-1777723, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

25. spacer 4.1|865649|22|NC_009487|CRT matches to position: 1777935-1777956, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 4.2|865707|23|NC_009487|CRT matches to position: 819202-819224, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

27. spacer 4.2|865707|23|NC_009487|CRT matches to position: 819480-819502, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 4.2|865707|23|NC_009487|CRT matches to position: 1473425-1473447, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 4.2|865707|23|NC_009487|CRT matches to position: 2075783-2075805, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 4.2|865707|23|NC_009487|CRT matches to position: 2415394-2415416, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1023234-1023255, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

32. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1777702-1777723, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

33. spacer 4.3|865766|22|NC_009487|CRT matches to position: 1777935-1777956, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

34. spacer 4.4|865824|23|NC_009487|CRT matches to position: 819202-819224, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 4.4|865824|23|NC_009487|CRT matches to position: 819480-819502, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 4.4|865824|23|NC_009487|CRT matches to position: 1473425-1473447, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.4|865824|23|NC_009487|CRT matches to position: 2075783-2075805, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 4.4|865824|23|NC_009487|CRT matches to position: 2415394-2415416, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 5.1|908864|34|NC_009487|CRISPRCasFinder matches to position: 1473405-1473438, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

40. spacer 6.1|1743390|33|NC_009487|CRISPRCasFinder matches to position: 1473406-1473438, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

41. spacer 8.1|2176631|34|NC_009487|CRISPRCasFinder matches to position: 1870075-1870108, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

42. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 872901-872931, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

43. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 872957-872987, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

44. spacer 4.2|865707|23|NC_009487|CRT matches to position: 1561745-1561767, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

45. spacer 4.2|865707|23|NC_009487|CRT matches to position: 2176688-2176710, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

46. spacer 4.4|865824|23|NC_009487|CRT matches to position: 1561745-1561767, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

47. spacer 4.4|865824|23|NC_009487|CRT matches to position: 2176688-2176710, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

48. spacer 7.2|1777902|22|NC_009487|PILER-CR matches to position: 1261784-1261805, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

49. spacer 7.2|1777902|22|NC_009487|PILER-CR matches to position: 2176576-2176597, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

50. spacer 7.2|1777902|22|NC_009487|PILER-CR matches to position: 2176693-2176714, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

51. spacer 8.1|2176631|34|NC_009487|CRISPRCasFinder matches to position: 1477779-1477812, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

52. spacer 8.1|2176631|34|NC_009487|CRISPRCasFinder matches to position: 2866044-2866077, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

53. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 83614-83644, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

54. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 424736-424766, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

55. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 692201-692231, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

56. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 909176-909206, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

57. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1164735-1164765, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

58. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1267263-1267293, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1473364-1473394, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1561798-1561828, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1561914-1561944, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 1758028-1758058, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

63. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 2415447-2415477, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 11.1|2426248|31|NC_009487|CRISPRCasFinder matches to position: 2592445-2592475, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NC_009487_4 4.2|865707|23|NC_009487|CRT 865707-865729 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NC_009487_4 4.4|865824|23|NC_009487|CRT 865824-865846 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NC_009487_10 10.1|2318210|34|NC_009487|CRISPRCasFinder 2318210-2318243 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NC_009487_10 10.1|2318210|34|NC_009487|CRISPRCasFinder 2318210-2318243 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|865707|23|NC_009487|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|865707|23|NC_009487|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|865824|23|NC_009487|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|865824|23|NC_009487|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 10.1|2318210|34|NC_009487|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 10.1|2318210|34|NC_009487|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 361158 : 403422 65 Staphylococcus_phage(86.15%) tail,capsid,integrase,terminase,head,holin,plate,portal attL 361048:361065|attR 404154:404171
DBSCAN-SWA_2 797330 : 805151 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 817122 : 831763 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 917242 : 974173 85 Staphylococcus_phage(75.34%) tail,capsid,integrase,terminase,head,transposase,holin,plate,portal attL 915339:915355|attR 949993:950009
DBSCAN-SWA_5 1073354 : 1146207 92 Staphylococcus_phage(88.24%) tail,capsid,integrase,terminase,bacteriocin,head,holin,plate,protease,portal attL 1076200:1076226|attR 1121703:1121729
DBSCAN-SWA_6 1166245 : 1174718 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1793034 : 1802077 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1932081 : 2039891 97 Staphylococcus_phage(92.31%) transposase,tRNA,protease NA
DBSCAN-SWA_9 2087163 : 2181571 114 Staphylococcus_phage(84.62%) tail,capsid,integrase,terminase,head,holin,tRNA,protease,portal attL 2085059:2085083|attR 2183857:2183881
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_009487.1|WP_000681968.1|2124381_2124558_-|hypothetical-protein 2124381_2124558_- 58 aa aa NA WHTH_GntR NA 2087163-2181571 yes
NC_009487.1|WP_000990056.1|2124800_2124899_-|hypothetical-protein 2124800_2124899_- 32 aa aa NA WHTH_GntR NA 2087163-2181571 yes
2. NC_009477
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 21894 : 28967 6 Staphylococcus_phage(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage