CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009505	Brucella ovis ATCC 25840 chromosome I, complete sequence	0 crisprs	csa3,WYL,DEDDh	0	0	2	0
NC_009504	Brucella ovis ATCC 25840 chromosome II, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

879390 : 885764

uncultured_Mediterranean_phage(100.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002968731.1\|879390_880242_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_002964011.1\|880234_880960_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|881105_881324_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_006012317.1\|881434_881968_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1\|881998_882823_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_025200887.1\|882899_884183_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_004683703.1\|884331_885099_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_006012321.1\|885095_885764_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-14	38.5

DBSCAN-SWA_2

1128462 : 1175479

Paenibacillus_phage(33.33%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004688423.1\|1128462_1129884_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_004683858.1\|1130112_1131405_+	citrate (Si)-synthase	NA	NA	NA	NA
WP_002964277.1\|1131577_1132765_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_006012684.1\|1132761_1133664_-	LpxI family protein	NA	NA	NA	NA
WP_002964279.1\|1133644_1134481_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004688426.1\|1134489_1134963_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_002964281.1\|1134955_1136011_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004690893.1\|1136064_1138410_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_006012691.1\|1138745_1139885_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_004685681.1\|1139951_1140764_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002964285.1\|1140868_1141633_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.4e-20	41.9
WP_002964286.1\|1141677_1142238_-	ribosome recycling factor	NA	NA	NA	NA
WP_002964287.1\|1142273_1142996_-	UMP kinase	NA	NA	NA	NA
WP_002964288.1\|1143162_1144080_-	elongation factor Ts	NA	NA	NA	NA
WP_006012692.1\|1144269_1145040_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_006012701.1\|1145157_1145511_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_002966849.1\|1145735_1146578_-	cell envelope integrity protein EipB	NA	NA	NA	NA
WP_006012705.1\|1146721_1147186_+	RidA family protein	NA	NA	NA	NA
WP_002964293.1\|1147187_1147928_+	glycerophosphoryl diester phosphodiesterase	M1HUL1	Acanthocystis_turfacea_Chlorella_virus	1.0e-07	31.8
WP_006012708.1\|1147982_1149170_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006012710.1\|1149241_1149664_+	HIT family protein	NA	NA	NA	NA
WP_006012713.1\|1149770_1152245_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-178	43.6
WP_002964297.1\|1152251_1152602_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.4e-15	44.4
WP_002968751.1\|1153087_1154506_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.1e-30	35.0
WP_006012716.1\|1154585_1154879_+	hypothetical protein	NA	NA	NA	NA
WP_002964301.1\|1154992_1155430_-	DUF1489 family protein	NA	NA	NA	NA
WP_115655902.1\|1155456_1156214_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	8.8e-15	39.3
WP_004689748.1\|1156362_1157766_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_006012719.1\|1158287_1159082_-	YdcF family protein	NA	NA	NA	NA
WP_006012722.1\|1159320_1160241_+	DUF1624 domain-containing protein	NA	NA	NA	NA
WP_004689750.1\|1160251_1160638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_006012725.1\|1160875_1161241_+	hypothetical protein	NA	NA	NA	NA
WP_002964308.1\|1161255_1161603_+	VanZ family protein	NA	NA	NA	NA
WP_080723468.1\|1161718_1162475_+\|transposase	IS5-like element IS711 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.8e-15	40.2
WP_002967723.1\|1162517_1162832_+	hypothetical protein	NA	NA	NA	NA
WP_004688441.1\|1163170_1163638_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.1e-27	48.2
WP_002964311.1\|1163768_1163945_+	hypothetical protein	NA	NA	NA	NA
WP_006012732.1\|1164521_1165934_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_006012740.1\|1167702_1169706_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_080723468.1\|1174722_1175479_+\|transposase	IS5-like element IS711 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.8e-15	40.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009504

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CRISPR-Cas detection and classification

Crispr_ID: NC_009504_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009504_1

178697-178797

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009504_1

>merge|NC_009504|1|178697-178797|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>NC_009504|1|1|178697-178797|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009504.1\|WP_006015177.1\|173483_174179_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NC_009504.1\|WP_002966377.1\|190619_191183_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_009504.1\|WP_006015189.1\|176278_177670_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_009504.1\|WP_006155683.1\|186649_187321_+\|hypothetical-protein	unknown	unknown	unknown
NC_009504.1\|WP_006015186.1\|175774_176176_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_009504.1\|WP_006015175.1\|170839_172348_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NC_009504.1\|WP_006015166.1\|168382_169117_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NC_009504.1\|WP_006015194.1\|180509_180806_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_009504.1\|WP_002972153.1\|172356_173487_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NC_009504.1\|WP_006015192.1\|177820_178075_-\|hypothetical-protein	unknown	unknown	unknown
NC_009504.1\|WP_006015173.1\|170131_170770_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_009504.1\|WP_006015180.1\|174251_175391_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_009504.1\|WP_002966379.1\|188279_188753_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_009504.1\|WP_049759995.1\|192824_194177_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_009504.1\|WP_002966380.1\|187665_188226_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_009504.1\|WP_006015163.1\|167279_168107_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NC_009504.1\|WP_006015204.1\|182206_183196_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_009504.1\|WP_006015206.1\|183539_186458_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NC_009504.1\|WP_006018995.1\|191268_192813_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_009504.1\|WP_006015215.1\|188893_190639_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108

Protein	Function_ID	Function_description	E-value
NC_009504.1\|WP_006015177.1\|173483_174179_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.01355e-134
NC_009504.1\|WP_002966380.1\|187665_188226_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	3.34911e-53
NC_009504.1\|WP_049759995.1\|192824_194177_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	6.42825e-104
NC_009504.1\|WP_006015189.1\|176278_177670_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_009504.1\|WP_002966377.1\|190619_191183_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NC_009504.1\|WP_006015186.1\|175774_176176_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.73441e-20
NC_009504.1\|WP_006015175.1\|170839_172348_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	8.06482e-159
NC_009504.1\|WP_002972153.1\|172356_173487_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
NC_009504.1\|WP_006015194.1\|180509_180806_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.34056e-52
NC_009504.1\|WP_006015166.1\|168382_169117_-\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	3.6309e-60
NC_009504.1\|WP_006015173.1\|170131_170770_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.00621e-42
NC_009504.1\|WP_006015163.1\|167279_168107_-\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	7.66672e-176
NC_009504.1\|WP_002966379.1\|188279_188753_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NC_009504.1\|WP_006015180.1\|174251_175391_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.00377e-159
NC_009504.1\|WP_006015204.1\|182206_183196_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.54982e-157
NC_009504.1\|WP_006015206.1\|183539_186458_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NC_009504.1\|WP_006018995.1\|191268_192813_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.24585e-118
NC_009504.1\|WP_006015215.1\|188893_190639_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	4.07369e-83

>NC_009504.1|WP_006015192.1|177820_178075_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDSKTQRKIEPTAWIRETDDDESQED
>NC_009504.1|WP_006015189.1|176278_177670_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPTHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NC_009504.1|WP_006015186.1|175774_176176_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFFLFLHGAGSLSIDARRG
>NC_009504.1|WP_006015180.1|174251_175391_-|sugar-MFS-transporter
MWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKLPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHMAYFWSGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIELFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NC_009504.1|WP_006015177.1|173483_174179_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIIRRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NC_009504.1|WP_002972153.1|172356_173487_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NC_009504.1|WP_006015175.1|170839_172348_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADALERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NC_009504.1|WP_006015173.1|170131_170770_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQPAHDAPCQQNQCRHDGGCCRRHCRTLNMFPALAATGLIG
>NC_009504.1|WP_006015166.1|168382_169117_-|L,D-transpeptidase
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAPARPRIARQETRKTKMHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRVSRKAEWPTWTPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTRVVVR
>NC_009504.1|WP_006015163.1|167279_168107_-|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHRPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHSKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA
>NC_009504.1|WP_006015194.1|180509_180806_-|co-chaperone-GroES
MADIKFRPLHGRVIVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NC_009504.1|WP_006015204.1|182206_183196_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQKSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NC_009504.1|WP_006015206.1|183539_186458_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICLFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRSRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENAAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWIAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NC_009504.1|WP_006155683.1|186649_187321_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQSKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDSNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NC_009504.1|WP_002966380.1|187665_188226_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVHHFALRDDTLRYMTGHGTPN
>NC_009504.1|WP_002966379.1|188279_188753_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NC_009504.1|WP_006015215.1|188893_190639_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDRDSRPRREGGDRDKPCKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERNRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NC_009504.1|WP_002966377.1|190619_191183_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NC_009504.1|WP_006018995.1|191268_192813_+|insulinase-family-protein
MNNPSLRRLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAQAALPEISRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANVKPGDAPALDLLSEILGGSQLSRLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ
>NC_009504.1|WP_049759995.1|192824_194177_+|insulinase-family-protein
MSNFKRAFPLRGALHDACAVAGLLAASFTMLIVCALPARAIEIQEVVSPKGIHAWLVEDNSVPLVSMRFSFKGGASQDPSGKEGIANLMTGLFDEGAGDLDSDVFQERIDNLGAEMSFSASQDSVSGGVRMLAENRDAVTDLVALAVNEPRFDQEAIDRIRQQIVAGIEAAQRNPSTIASRKFAEVLYGNHPYARDDEGTVKSLQSISRDDLANFHRKNFARDKLTVGVVGAINAKDLGVMLDRIFGDLPASAELVPVPDAKLALGTTTSLNFDMPQTSISFVYPAIPRKDPEFFAAYLMNHILGGGFTSRLYNEVREKRGLAYSVSSSMVMHDHVSELMISTATRPDKAQDSLKIIREQVAAMANDGPTEEELAAAKSFLKGSYAVNNLDSSGAIANMLVSLQEAGLPSDYIDKRSELIDAVTLDQVKAIARKLLQAEPAILIYGPAQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

494720 : 535072

Tupanvirus(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080723468.1\|494720_495477_+\|transposase	IS5-like element IS711 family transposase	NA	NA	NA	NA
WP_002966091.1\|495590_495938_-	RcnB family protein	NA	NA	NA	NA
WP_002966088.1\|496732_497746_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.7e-83	47.8
WP_006015825.1\|497745_498732_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.6e-45	36.1
WP_002967301.1\|500587_502012_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	6.6e-80	38.5
WP_002966084.1\|502001_502547_+	DUF995 domain-containing protein	NA	NA	NA	NA
WP_006015829.1\|502596_503541_+	mannan endo-1,4-beta-mannosidase	NA	NA	NA	NA
WP_002972060.1\|503656_504154_+	DUF995 domain-containing protein	NA	NA	NA	NA
WP_004688990.1\|504270_504597_-	hypothetical protein	NA	NA	NA	NA
WP_004688991.1\|504739_505861_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_115655902.1\|506226_506984_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_006015831.1\|507638_507887_+	WGR domain-containing protein	NA	NA	NA	NA
WP_006015833.1\|508216_508762_-	hypothetical protein	NA	NA	NA	NA
WP_115655960.1\|508734_509040_-	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_115655962.1\|508988_509141_-	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_080515044.1\|509295_509589_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_006015835.1\|509601_509778_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_006015837.1\|509774_510164_-	hypothetical protein	NA	NA	NA	NA
WP_006015841.1\|510793_511354_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006015872.1\|512804_513341_+	hypothetical protein	NA	NA	NA	NA
WP_006015919.1\|514921_515881_+\|transposase	transposase	NA	NA	NA	NA
WP_006015921.1\|515887_516244_-	hypothetical protein	NA	NA	NA	NA
WP_006015924.1\|516576_517008_-	hypothetical protein	NA	NA	NA	NA
WP_006015926.1\|517009_517273_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_006641515.1\|518510_518810_-\|transposase	transposase	NA	NA	NA	NA
WP_167316281.1\|518836_519058_-	hypothetical protein	NA	NA	NA	NA
WP_006015930.1\|519616_520603_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-20	30.0
WP_006015932.1\|520595_521576_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-10	29.2
WP_006015934.1\|521572_522394_-	ABC transporter permease	NA	NA	NA	NA
WP_006015936.1\|522398_523334_-	ABC transporter permease	NA	NA	NA	NA
WP_006015938.1\|523427_525023_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006015940.1\|525165_526797_-	amidohydrolase	NA	NA	NA	NA
WP_006015950.1\|528507_529116_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_006015952.1\|529293_530025_-	hypothetical protein	NA	NA	NA	NA
WP_115655902.1\|532747_533505_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_080723468.1\|534315_535072_+\|transposase	IS5-like element IS711 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009505

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009504

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection