CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009633	Alkaliphilus metalliredigens QYMF, complete genome	11 crisprs	cas3,RT,cas14j,csa3,cas5,cas8c,cas7,cas4,cas1,cas2,PrimPol,WYL,cas6,cas8b2,DEDDh,DinG	2	8	16	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009633_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_1

391671-391775

Orphan

Consensus_repeat	Method
TTGCCATAGCATAAGACGAATTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_1

>merge|NC_009633|1|391671-391775|CRISPRCasFinder
TTGCCATAGCATAAGACGAATTTTTAAGCACTTGTGATTTTTAACAAAGGGGCGTTAAAAATAGAGTGCGCTATGAGTCGTTGCGATAGCATAAGACGAATTTTT

>NC_009633|1|1|391671-391775|CRISPRCasFinder
TTGCCATAGCATAAGACGAATTTTT	AAGCACTTGTGATTTTTAACAAAGGGGCGTTAAAAATAGAGTGCGCTATGAGTCG
TTGCGATAGCATAAGACGAATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_011971484.1\|384555_385254_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NC_009633.1\|WP_011971493.1\|391785_392205_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|197363
NC_009633.1\|WP_011971499.1\|397787_398372_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009633.1\|WP_011971497.1\|395534_396539_+\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NC_009633.1\|WP_011971485.1\|385337_385892_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|184068
NC_009633.1\|WP_011971492.1\|391224_391629_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|213395
NC_009633.1\|WP_011971496.1\|394174_395428_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_009633.1\|WP_011971488.1\|386817_387360_+\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NC_009633.1\|WP_011971501.1\|399601_402673_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_009633.1\|WP_011971500.1\|398444_399605_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_009633.1\|WP_011971502.1\|402813_403077_+\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NC_009633.1\|WP_011971495.1\|393303_394143_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370056
NC_009633.1\|WP_011971487.1\|386323_386830_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|349951
NC_009633.1\|WP_083760795.1\|396645_397545_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_009633.1\|WP_011971489.1\|387377_388895_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_009633.1\|WP_011971486.1\|385989_386256_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|184068
NC_009633.1\|WP_011971491.1\|389820_391215_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_009633.1\|WP_011971494.1\|392530_393082_+\|YueI-family-protein	unknown	unknown	gnl\|CDD\|377952
NC_009633.1\|WP_011971490.1\|388932_389802_+\|ATP-synthase-F1-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NC_009633.1\|WP_011971483.1\|384143_384590_+\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_011971484.1\|384555_385254_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	7.89944e-58
NC_009633.1\|WP_011971493.1\|391785_392205_-\|NusG-domain-II-containing-protein	gnl\|CDD\|197363	cd09846, DUF1312, N-Utilization Substance G (NusG) N terminal (NGN) insert and Lin0431 are part of DUF1312. Domains of Unknown Function 1312 (DUF1312) are represented in at least 71 bacterial species with no functional annotation. Included in this family are N-Utilization Substance G (NusG) N terminal (NGN) insert and Lin0431, having similar structure and surface features that appear to be conserved across these domain families, suggesting similar function. NusG contains NGN at the N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at the C-terminus in bacteria and archaea, and this insert (often known as Domain II) is found in several bacteria. Lin0431 is similar to NGN-insert but does ot contain the disulphite bridge.	1.9256e-27
NC_009633.1\|WP_011971499.1\|397787_398372_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.17708e-11
NC_009633.1\|WP_011971497.1\|395534_396539_+\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	8.25856e-115
NC_009633.1\|WP_011971485.1\|385337_385892_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|184068	PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.	1.3955e-19
NC_009633.1\|WP_011971492.1\|391224_391629_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|213395	cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.	1.89847e-39
NC_009633.1\|WP_011971496.1\|394174_395428_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NC_009633.1\|WP_011971488.1\|386817_387360_+\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	4.42669e-56
NC_009633.1\|WP_011971501.1\|399601_402673_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_009633.1\|WP_011971500.1\|398444_399605_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.04249e-64
NC_009633.1\|WP_011971502.1\|402813_403077_+\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	5.75152e-43
NC_009633.1\|WP_011971495.1\|393303_394143_+\|hypothetical-protein	gnl\|CDD\|370056	pfam08680, DUF1779, TATA-box binding. TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).	3.88491e-25
NC_009633.1\|WP_011971487.1\|386323_386830_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	1.21087e-35
NC_009633.1\|WP_083760795.1\|396645_397545_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.27125e-26
NC_009633.1\|WP_011971489.1\|387377_388895_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_009633.1\|WP_011971486.1\|385989_386256_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|184068	PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.	1.86242e-25
NC_009633.1\|WP_011971491.1\|389820_391215_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NC_009633.1\|WP_011971494.1\|392530_393082_+\|YueI-family-protein	gnl\|CDD\|377952	pfam07997, DUF1694, Protein of unknown function (DUF1694). This family contains many hypothetical proteins.	6.39511e-41
NC_009633.1\|WP_011971490.1\|388932_389802_+\|ATP-synthase-F1-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	8.32188e-138
NC_009633.1\|WP_011971483.1\|384143_384590_+\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	2.02083e-11

>NC_009633.1|WP_011971492.1|391224_391629_+|F0F1-ATP-synthase-subunit-epsilon
MASKFRLQIVTPDRTFLDEEVEMAVVRTVSGDEGILSDHMLMVTPLKIGKMKIQIGDELKEATIAGGFIQVDQDKTIIITDAAEWPEEIDVSRAEEAKQRAEERLQKEREEVDTFRAEIALKKATNRLGLTKNK
>NC_009633.1|WP_011971491.1|389820_391215_+|F0F1-ATP-synthase-subunit-beta
MATGNVGKLVQIIGAVVDIRFSSEEIPALLSAITIQGPDGLVTVEVAQHIGDDTARCVAMRSTDGLVRGMEAIDTGAPITVPVGRETLGRIFNVLGEVVDEGKPVEAKMHLPIHREAPSFEEQEAATEIFETGIKVVDLIAPYARGGKVGLFGGAGVGKTVLIMELINNIAKEHGGLSVFAGVGERTREGNDLYHEMIESGVIDKTSLVYGQMNEPPGARMRVGLTGLTMAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSNSRILDPATVGQEHYEVARGVQEVLQRYKELQDIIAILGMDELSDEDKLTVARARRVQRFLSQPFFVAEQFTGMAGKYVPLKETIRGFKEILDGKHDDLPESAFLFVGSIDEAVEKANKG
>NC_009633.1|WP_011971490.1|388932_389802_+|ATP-synthase-F1-subunit-gamma
MGVGMQDIKRRIKSVNSTKQITKAMELVSSAKLRKARLKLEKTRPYFKVVEETINDIVSSTQGIRHDLITPREVKKTAYIVITADRGLSGGYNANVIKAAVNHLQEKERVSIIAIGKKGRGFFRKRGYDLDGEFTKISENPSFSDAQGIGKLGMELYKQELVDELYLVYTEFVSTITHKPRVVKLLPLEPQTGGEGAEKPKERDEFMSYEPSPEEVLDYLIPKYIESMLYGALVESSTSQQGATRVAMESATDNATDMIDGLQLQYNRARQASITQEIAEIVSGAEALK
>NC_009633.1|WP_011971489.1|387377_388895_+|F0F1-ATP-synthase-subunit-alpha
MNLRPEEISSIIQEQIKRYENKLEVKDVGTVIQVGDAIARIHGLEKCMAGELLEFPGGVYGMALNLEEDNVGCVLLGSDDKIKEGDTVKRTGRIVEVPVGEALLGRVVNSLGQPIDGKGPIQTDKYRDIERVAPGIIARKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKHSDVICIYVAIGQKKSTVSQIQDTLEKNGAMEYTIIVASTASELAPLQYIAPYAGCAMGEEFMENGKHVLIIYDDLSKHAVAYRAMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDERGGGSLTALPLIETQAGDVSAYIPTNVISITDGQIFLESELFYSGVRPAVNPGISVSRVGGNAQIKAMKKVAGTLRLELAQYRELAAFAQFGSELDKETQARLAQGERIIEMLKQPQFKPMPVEEQVMMIYAITNKYLTDIEVVEIGPFESQFISYMVGHHAEVGQAIRDNGVLDQASETTLKEAIEAFKKQFKAERE
>NC_009633.1|WP_011971488.1|386817_387360_+|F0F1-ATP-synthase-subunit-delta
MAELVAKRYAKALFQVAFEMNRYEDVTEELAFVAENLKQHSDLNELLKSPVITLGEKKEILSTIFKEQISPEVFNFLRILLDKSRQGDFQEIYEEYKILADAGKNKIEAVAITALPMDNNDLLKLQVNLSMSSGKNVKLKNEIDPTVIGGVLVKMGDKIIDGTVKARLNQMQDQLLQIIV
>NC_009633.1|WP_011971487.1|386323_386830_+|F0F1-ATP-synthase-subunit-B
MQGLVEFVLSNFIFTLINLWIMYWVLKKFLFKPTTEYMEGRKKSIADSIQEAEMKNKEADESKAQYDMKLQDIKKERSQIIDEATKRAEKRGDEIIKAAEDEAEKVIERAMTEIQREKQKSLNEMKNEISQLAIAAATKVIEKDLDEGTHHKMIQQFIDEVGETKWQN
>NC_009633.1|WP_011971486.1|385989_386256_+|ATP-synthase-F0-subunit-C
MEPITGKALILAASAIGAGLAMIAGIGPGIGQGYAAGKGAEGVGRQPEAQGDIVRTMLLGAAVAETTGIYGLIIALILLFANPLVGLL
>NC_009633.1|WP_011971485.1|385337_385892_+|ATP-synthase-F0-subunit-C
MGTTDFITMFFEWLATFEPRALILASTAIAAGLAMIAGIGPGIGQGFAAGKGAEAASLNPKSAKSASMVMLLGAAVAETSGILSLVVALIMLYANPLVNTDGAAIILSASVIGAGLAMIAGIGPGIGQGYAAGKGTEMVGKRPQYQPMIVRTMFLGQAVAQTTGIYALIIALVLMFANPLVGLL
>NC_009633.1|WP_011971484.1|384555_385254_+|F0F1-ATP-synthase-subunit-A
MEVGFGPRIIFNIGNIPISETVVMTWFVMAVLFAFAFVATRRFERVPSGLQNVTEAIVDEMNGLTAQTMGADKKGFAPYMGTLFLFLLVSNILGIFGLRPPTADVNVTFALALTTFAMIHFFGAKTKGLGTYLKGFLEPFAFMLPLNILSELSLPISLAFRLFGNIVGGFIIMALLYGGLASVSGMIGLESFPIFAAGIPVALHLYFDLFAGVLQTFIFVMLSMVFIAMAMD
>NC_009633.1|WP_011971483.1|384143_384590_+|ATP-synthase-subunit-I
MSDPLWKTQLRVVKGVLVLNVIIAILFFFAVKEPIPYIMGLLFGTIIVILNFRLLYLTLEKAVHMVPHKAQAYTASRYMVRYLVTGIVVYISIQAEHIHVLGTIAGLLSIKLVILKTELFNDKEYFKNIFKKGRRRSDGGRIRTKDNI
>NC_009633.1|WP_011971493.1|391785_392205_-|NusG-domain-II-containing-protein
MFKMMTKGDKILIFAILALSVASIFAIPRLLTTVEEGKMVVVNLDGTVIHRFPLEESPEAEFLEFPFEVRGQSYTGKIEMKDGRVMLHRLSDDISPLSIHTDMGWISESYQMIVSLPIRLIITIEEEDPPEYDFDIISY
>NC_009633.1|WP_011971494.1|392530_393082_+|YueI-family-protein
MSKKSELDKTIEVGLHGTPEIKREEKKKWLGEFRERVVLGLTKEQAGMMEAERYVEEALRDPMGEMLILNYSLPMKVTSKYMRVAKDLNKEYRSVSTDYPEAMGIVVASRNAIDRQAVMPEIQGFPEKFKHLRHKELCGECYGELEQIAPDYVSQFKQINFFNKMIGIKCSACEKKEDGGPLM
>NC_009633.1|WP_011971495.1|393303_394143_+|hypothetical-protein
MKKIATMAIIFSLFFGLVYYASAYFIKDQENIGDVEIHGIIQAFEISESRLLEYNTNTTLSIPDTFWSIEEMRIIKKDLIKAFELNGQRKDIINYEHHDPYFIEDYEEIEGDVIYSNEIQEEGYRQITLTAIENSGKISVIILQATEFDGEKEAHIIVDIVQNKEYKGIVETCNQSEGILSKYGMDMETTIIIVGTYDEEIETKAQLAKLEEVLHAVMGQKVEQVQDEHYTMLTGYTSLIPQAIQYDGKTVNLQLAMRYNSYENRTYLWIATPLITTTY
>NC_009633.1|WP_011971496.1|394174_395428_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MGKIIVEKSGPLQGTIRVSGAKNSVLPILAASLLATEQCTLEDVPALKDVEVICEVLTSLGADVRRISRDKIEVSAADIDNFEAPYELVRKMRASFLVMGPLLARLGKARISMPGGCAIGTRPIDLHLKGFKALGAKITMGHGFVEAKADQLIGSRIYLDFPSVGATENIMMAAVLAKGQTVIENAAEEPELIDLANFLNKMGADVRGAGTDTIKINGVDKLGGAVHPVIPDRVEAGTYMIAAAITGGNLFIDNVMVDHLKPIMAKLRECNIEVSEEGNGVRVIAENRPKAVDIKTMPYPGFPTDMQAQFMALMCVAEGTSVITETVFENRFMHVSELKRMGADIKIEGRSTVIEGRTDLQGAPVKATDLRAGAALILTGLVSEGKTEISDIYHIDRGYVDIEEKLRNVGAIIYREE
>NC_009633.1|WP_011971497.1|395534_396539_+|stage-II-sporulation-protein-D
MRRIFFTVIAFAVATLLIPMLIIRSCDLSTPEEDKSRDPAVVESDLKVNVYNHDTGEIMELSLEDYVTNVVAAEVPAAFEVEAIKAQAVAARTFTIWRRYLYGEEGHPNYPGAILSTSHRDSQEWLSEEQLLERHGSRWMNDYWPKIQEAVEETQGVIMTYNMQPIEPLYHSTSGGMTENSEDVFASAVPYLRSVSSPYEERSPVLIDEKIVSIKEFIDTIKDRYPRIELNQSNLDRQIDILERSSGGRITRIKVGSEELTGREIREFFELRSADFEMNFSQNNVTFITKGYGHGVGMSQWGANGMAEQGYSFEKILEHYYQGVTLSRLVTYRE
>NC_009633.1|WP_083760795.1|396645_397545_+|M23-family-metallopeptidase
MEVGFMSNENNNKNNNDKKKDKKTLYQFLDKEGFYIILFLCVCIVAVTAIWVSNQSGDDFISEAPEDRGPDVTLVEGDGEEQEQEEDSRETAIVGESEEEGEPSEETSQNTEKLEEQEQIQEQESEKPIVEATPKQEEKPKTQEIIEDKDAKEEVAPTASSAQDMALPVVGKLGMSFADDRLVYHRTLEQWATHHGIDLHAEEGAPVKTVLTGEVVEVLNDSIIGITVTIDHGDGLMTRYSNLSTDAMVNVGDHVEKGKTISGVGKTSVNKREEGALLHFQVLKDNKPVDPQAYLPKLN
>NC_009633.1|WP_011971499.1|397787_398372_+|TetR/AcrR-family-transcriptional-regulator
MARITEPEKMENIKKAVMGAIIEHGYTGMSIASISERAGVSPGYLYRHYSSKEELVQELVDSQMSKIFNSFIADIDTSSTIYEAAYKTIGKLFMKANEEPILAKFMASVVMDVRIPAKNKADNFKNILELASKCIELGKKTGEINQRVTATEVLTVSFTIPFRYLLISFELDKDKKFTQEEIKRITTICVNAMR
>NC_009633.1|WP_011971500.1|398444_399605_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRITSILLISLLILTGCTAEHIEEEKEVVKKVYTKTIEASAYSNDLTLSGNVVPTQMVKLSFKIPGVVSNVLVNEGDVVKEGQPIATMEQGDYLIRVKASQAELEAARLQIETEIPAKTNQAKAQYELTKIKYDRVKALFEQGAVSQSQLDEISTKLIVDENTYNQAVDAKEVAETKLQMAEASLDLANANISDTTIYSPIDGVILQKIVASGETTSGGHPIVVIGEVNKVWAEIGVSDEYINALRIGQKSDVYIYGIDKTVEGIIDEIAFLADTKTRTFPVKILLNNPNGELKPGMITKVNLNLSNKEKMLIPLSSVLQLSTGSAVYVYSEETQTVSMRMIETGEIVKDKIEVIEGLELDEKIVIEGQFLLREGEQVVVEELIV
>NC_009633.1|WP_011971501.1|399601_402673_+|efflux-RND-transporter-permease-subunit
MIKWSVNHKSIIMLFVVLTLIVGGFLYGAMERQENPTVAAPVAVIKIIYPGATPEDIEKLIIKPVEDEMNRISDIKTIESFALDSIGIVKVTLKDLSDGKIDEAWNEVKSGLDTVKPLLPPDAHEPTMETDLASSYGIIIGLTSQDYTYQNLSEVANKLRDELITDPGVKAIDIDGEINDQIHINLDMIKLEQYTVSPTDIATAIKARNINIPGGNLVMDQVKIPVQVSGEYKDIEEIKNTIVAVSTETGAPIYLKNVADVVRIQEKKEIFASVNNEKALLIGVEYMDGQNIVAIGERLNTILDEFSMNQLYENMELITLTDQANFTKDAINLFEKNLLSAILLVVMVVVVTMGLRSAIVVSLPIPIVIVMVFIFMYLSGIPLHQVSIASLIISLSLLVANGIVVNDNINVYLEKGHDRLTACTKGIQEVKIPILTSTLTTVASFIPLAMMQGVSGKFVKSLPVLVSVALIGSYITALTVIPALGYKLLKVKEKDTEGKGIKTKIAKVLKVDGFSAYILNLYGRLLKGALKIPVLVILFFVGTLIASLWVIPSLGVQLFPPVERDQYVIDVTTQDGSDVEKTEKAAIMIGDLLKEDVTINDFAYKVGDGMLQYYVTFIPNDPASNKVQFLINGDRDEVSRIEKELSTKVPGVSINIRQLENAAPVTYPVQVRVSGQEISELRRIAEEIKDITHDVPGIKSIEDNYGYDSYKLNIRVNEEKANLVGVTNYDIASTVRMAVNGLTVSELKEEDIEKDAIPIILKIPDEKKQDRDVLNNIFITSQITDKNIPINQIAEIETETSLNKIVRRNGGRTITVGIFVESRYNSNEISKSVEELLKDYKLPDGYTIEFGGESEERSDAFDSMKVPAILAIVIIYLILVIQFGNLKEPLIIMGTIPLSFIGIIWGLKWMGYPIGFMALLGAISLMGVVVNNGIVLLDFIKLLVKEKDDVKEAIIEACKTRMRPIMIGMITTVISLIPLALSGGALWAPMATSIIFGMLVSSVLTLLVIPCAYFVIQGKEGLN
>NC_009633.1|WP_011971502.1|402813_403077_+|sporulation-transcriptional-regulator-SpoIIID
MKDYIEKRAVEIANYIINQGATVRQTARVFGVSKSTVHKDVTERLPKINPLVANQVKDILDTNKAERHIRGGKATRMKYKSKDRRVQ

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Crispr_ID: NC_009633_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_2

487670-487805

Orphan

Consensus_repeat	Method
GGATTATTTCGGATGAAAGGAATCATGAAATTTCTAACTAAGTGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_2

>merge|NC_009633|2|487670-487805|CRISPRCasFinder
GGATTATTTCGGATGAAAGGAATCATGAAATTTCTAACTAAGTGACTGATACAAAATCAAGGTAGTTAGGGAATTTCATGATTCCTTTAGGATTATTTCGGATGAAAGGAATCATAAAATTTCTAACTAAGTGACT

>NC_009633|2|2|487670-487805|CRISPRCasFinder
GGATTATTTCGGATGAAAGGAATCATGAAATTTCTAACTAAGTGACT	GATACAAAATCAAGGTAGTTAGGGAATTTCATGATTCCTTTA
GGATTATTTCGGATGAAAGGAATCATAAAATTTCTAACTAAGTGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_011971605.1\|483408_484200_+\|FAD-binding-molybdopterin-dehydrogenase	unknown	unknown	gnl\|CDD\|224238
NC_009633.1\|WP_011971600.1\|475913_476963_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NC_009633.1\|WP_011971611.1\|489808_490738_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NC_009633.1\|WP_011971603.1\|480587_481895_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_009633.1\|WP_011971609.1\|488030_488363_+\|DUF3870-domain-containing-protein	unknown	unknown	gnl\|CDD\|372419
NC_009633.1\|WP_083760803.1\|491986_492127_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225114
NC_009633.1\|WP_011971613.1\|492142_492961_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NC_009633.1\|WP_011971599.1\|474939_475833_+\|MYG1-family-protein	unknown	unknown	gnl\|CDD\|377098
NC_009633.1\|WP_011971615.1\|495475_496228_+\|nickel-pincer-cofactor-biosynthesis-protein-LarB	unknown	unknown	gnl\|CDD\|224605
NC_009633.1\|WP_011971608.1\|487054_487591_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_011971617.1\|497535_498348_+\|ATP-dependent-sacrificial-sulfur-transferase-LarE	unknown	unknown	gnl\|CDD\|238948
NC_009633.1\|WP_011971616.1\|496220_497486_+\|nickel-pincer-cofactor-biosynthesis-protein-LarC	unknown	unknown	gnl\|CDD\|376691
NC_009633.1\|WP_011971610.1\|488685_489777_+\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NC_009633.1\|WP_011971614.1\|493221_495150_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273816
NC_009633.1\|WP_011971601.1\|477800_479114_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NC_009633.1\|WP_011971602.1\|479339_479756_+\|transposase	unknown	unknown	gnl\|CDD\|377531
NC_009633.1\|WP_041721323.1\|484199_484649_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NC_009633.1\|WP_011971604.1\|481906_482116_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_011971607.1\|484651_486961_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236637
NC_009633.1\|WP_011971612.1\|490844_491831_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_011971605.1\|483408_484200_+\|FAD-binding-molybdopterin-dehydrogenase	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	3.96964e-31
NC_009633.1\|WP_011971600.1\|475913_476963_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	3.40942e-171
NC_009633.1\|WP_011971611.1\|489808_490738_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	5.10222e-125
NC_009633.1\|WP_011971603.1\|480587_481895_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.3936e-55
NC_009633.1\|WP_011971609.1\|488030_488363_+\|DUF3870-domain-containing-protein	gnl\|CDD\|372419	pfam12986, DUF3870, Domain of unknown function (DUF3870). A family based on the C-terminal domain of 3KOG which shows structural similarity to pore-forming proteins, suggesting it may have a lytic function.	2.4158e-42
NC_009633.1\|WP_083760803.1\|491986_492127_+\|hypothetical-protein	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	9.3826e-13
NC_009633.1\|WP_011971613.1\|492142_492961_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	7.376e-19
NC_009633.1\|WP_011971599.1\|474939_475833_+\|MYG1-family-protein	gnl\|CDD\|377098	pfam03690, UPF0160, Uncharacterized protein family (UPF0160). This family of proteins contains a large number of metal binding residues. The patterns are suggestive of a phosphoesterase function. The conserved DHH motif may mean this family is related to pfam01368.	1.06253e-87
NC_009633.1\|WP_011971615.1\|495475_496228_+\|nickel-pincer-cofactor-biosynthesis-protein-LarB	gnl\|CDD\|224605	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only].	5.25495e-102
NC_009633.1\|WP_011971617.1\|497535_498348_+\|ATP-dependent-sacrificial-sulfur-transferase-LarE	gnl\|CDD\|238948	cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.	6.10316e-107
NC_009633.1\|WP_011971616.1\|496220_497486_+\|nickel-pincer-cofactor-biosynthesis-protein-LarC	gnl\|CDD\|376691	pfam01969, DUF111, Protein of unknown function DUF111. This prokaryotic family has no known function.	0
NC_009633.1\|WP_011971607.1\|484651_486961_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|236637	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.	0
NC_009633.1\|WP_011971614.1\|493221_495150_+\|FAD-binding-protein	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.01021e-36
NC_009633.1\|WP_011971601.1\|477800_479114_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.16318e-139
NC_009633.1\|WP_011971602.1\|479339_479756_+\|transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.64013e-06
NC_009633.1\|WP_041721323.1\|484199_484649_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	4.35954e-48
NC_009633.1\|WP_011971610.1\|488685_489777_+\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.83803e-142
NC_009633.1\|WP_011971612.1\|490844_491831_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	3.4205e-97

>NC_009633.1|WP_011971608.1|487054_487591_-|hypothetical-protein
MKYDVKDIAIIALTAALTVVIGYLFYVVGSFFPIPGYKFIIFAPFLGFMIFIPTRKIQKVGVISAVSIVFAALMTPVSVFMGIAIFMTGITTDLLTLLLLHNYNQMWKITASVGLYPMFSVLWSFLVSYYFTGNAMYQLVGGWISILLLCLVIYILGVVGAYLSNKVIFSRISKSIIS
>NC_009633.1|WP_011971607.1|484651_486961_+|molybdopterin-dependent-oxidoreductase
MKIVNQSITKIDGMDIATGKPVYTDDLVNVKALVVKILRSPHAFAKIKSIDVEKAKKRSGVACVLTHQDVPNQRFTMAGQSYPEPSPYDRLVLDEYVRYVGDEVAIIAAVDERTAIEAMKMIKVEYEILEPVLNFEEAIGHPSVIHPEENLEVNFDIGMKREKNIAATVLIENGDMEEALKNSPVIVEETYYTQAQAHGMMETQRAFTYLDVSGRLTIVTSTQIPFHVRRIVANALEIPKSKVRVIKPKIGGGFGGKQNASVEVFPAIVTLKTGKPAKIIYDRKENLGCTSSRHAMKIKVKLGADHEGNIKAVDMEALSDTGAYGEHASTVLGVAGYKTLPLYNTAKAVRYSGEAVYTNKMPAGALRGYGVTQGIFALESAINQLADQLNMDPAEVREKNLIKQGETNPILSGSKAGEPGKLDSCTLDRCIEKGKELIGWKEKYPSQRVSDTKVRAVGMAITMQGSGIAGIDTAAVTIKLNDDGLYSLLIGATEMGMGSDTILTQMAAETLEIGMDKFIVHGIDTDLSPYDTGSYASSTTYVTGNAVIKAAEDLKGKMMRQASGMLGVPLKGLRFKGDTIGVINHPDKQVSLNEIAADVGAGEGKQEQLMGSGTFGGDKSPPPFIAGFAEVEVDLETGKIVLIDYVAVIDCGTVINPNLARIQAEGGLVQGIGMAMYEDVLYDKAGRMMTNSFMQYKIPCRKDINKITVAFEPSYEPTGPFGAKSIGEVVINTPPPAIAHAVFNATGVYVRNLPITPEKVVKGMMESSK
>NC_009633.1|WP_041721323.1|484199_484649_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MKINVTVNDEQLEMEVGYDEFLVEALRRYGFNSVKRGCDTGCCGLCTIWINDQPTLSCSSLAVRANNQKITTIEGLQEEATDFAKVLVKEGAEQCGFCSPGFIMTILAMKRELKNPTEEEIIHYLTGNLCRCTGYLGQLRAVKKYMGVV
>NC_009633.1|WP_011971605.1|483408_484200_+|FAD-binding-molybdopterin-dehydrogenase
MFQIKNYAIPNTIEEAYQLLNEKRANTLLGGCGFLKMGKKTIPTAIDLSHLGLDKIKEDENAIEIGAMTSFRAVEVSSILNDHFDGILPRAVKEILGVQFRNVVTVGATVYSRYGFSDFITALLALDAYVILYKGGKIPLAAFLAQGCQKDILIKIVILKKNTRAAFHAMRNSQGDYAILNVAVSKENNEFKIAVGARPQRAMIAREASKLLGEGQLSEAMIEEVSILAAKELTFGSNMRGTKEYRQILCKALVKRGIKEVLS
>NC_009633.1|WP_011971604.1|481906_482116_+|hypothetical-protein
MMFIKSKVIANDKQRLPNQNLLANKDQSKEKDEITRGKGSGEEVKGQIRLWNSSYAKHTFRQRKFLEWE
>NC_009633.1|WP_011971603.1|480587_481895_+|methyl-accepting-chemotaxis-protein
MSNGNVSKIKSIRKAGMGLQFKLTVFIVLAFTFVTTGNSIFLQYASQVMDNLLLMNVMSTLVSIFLAGCVAFGIIKFFIKKPLDSLTDLGKRLANNNLTEKVQVKSKDEFGQLSDMFNHTIENLRVLIGQIQNATETINLSTQQLADSSSDMNEFSEVISNSTQQLANGSNEQSQSITDIGHAVDELAKNIQDIDVKLKKLDESTDSVMEKAATGQVTIDENMNVMQEIADFTDGLGGTIRTLKNDSDEISQILQMINNIAEQTNLLALNASIEAARAGDAGRGFAVVAEEIRKLAENSKGETENIEALIKNTQQNTSKAVSLMNDADKQIEKGLETSQRTKDAFSSIIQGTEESILQVKEINSLSTDVASISQEISATVQEISAVIEESSAVTEEVASGTEQQGTEFKKMMGSIQKLSTIGEELTSLIGQFKTK
>NC_009633.1|WP_011971602.1|479339_479756_+|transposase
MAFVANDYNQISLNDSAFSLTQREKKFLAKSWAKAFAQKVFPAIDEEEFSVLYSDKAFRPNTPVNVIIGAMILKEMHGVTDEEILESLIFDIRFQYGLHTTSSMEQPLSDRSLSRFRERCTTYEAMTGIVLFYKDSCI
>NC_009633.1|WP_011971601.1|477800_479114_+|purine-permease
MEKKSSVYELEGVPPLKEAIPLGMQHVLAMFAGNITPIMVIAGALSISVQDRTFLIQASMFIAGVVTLLQLYFGAKLPIVMGTSSGFIGTSLAIGAKYGLAGILGASLIGGVFEGVLGFFIKPLRKFFPPLVTGTVVLTIGLSLIPIGVRSFGGGSGAADFGSLSNLFLGTVVLVTILMLKQFTKGFSSASAILIGIIVGYLIAIPMGKVDFGTVQGAGWFSFPTPLKFGLAFHWDAIVAMGVMYIVTAVETVGDISGITMGGLKRDATDKELSSGVIMDGIGSSLAALFGVLPNTSFSQNVGIVALTGVVNRFAIATGAIFLIIAGLFPKVGALISIMPSSVLGGAAIIMFSMITISGINLVTQEPLDGRNGIILATALALGLGMSSVPEILVNMPEGIRLLFGGSGIVIAATVALVLNIVFPKTSTPEKAKESAV
>NC_009633.1|WP_011971600.1|475913_476963_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MNKLKETIRMIEELDQETMQKARERVDNLIKPPKSLGRLEDLAVQLAGITKTIHPTVANKAIIVMAADHGVYEEGIAGFPQEITVVQTLNFVKGVTGVCALGKVSGTKIIPVDIGVKEDLDPNAGVLIRKIKYGTDNMAKGPAMSREEAIRALEVGIEVANEEIKNGVTLLGTGEMGIGNTTASTAILSVLGNFDPKEITGRGAGLSPEGIQRKAAVIKRAIEVNQPDATDGIDVVAKVGGLEIAGMAGVMLAAAANRIPVVVDGYIATAAALIAVSLEPKTKQYLIPSHASAEIGSIKATELLGIKPMIHMDLCLGEGSGAALVFPIVEAACHMINCMPTFEEAGITI
>NC_009633.1|WP_011971599.1|474939_475833_+|MYG1-family-protein
MEKPYKRVGTHHGRFHADEVMATAILMELFEIEVTRTRDPKILSKLDIVYDVGGGVFDHHGIEKVYRDDGIPFAACGLIWNEFGRKVISMKESSLVESEIELVFESVDRALMKGIDAIDNGVRIGEQIVDLMDISSIVSMFNPPWDLEKSEKECFDRAVAVASSVLNNTIDHKLAVLRTRIPVSKAYKRRENPKILVLEKSCPWQKVLSEIDERNEVLFVVYPDKDNYAIQTVRGEDGEDKKYLPKSWVGKEEKELAEVTGVADAVFCHTGRFIAVARRLESIVKMAELAINEEDKP
>NC_009633.1|WP_011971609.1|488030_488363_+|DUF3870-domain-containing-protein
MYDKDTVYIVGHGRTSSDNAITHHYKIFFISFVVKIETTEIIDLECSATVDITKKFVHSLFIGKKLGEFDEEIEEEIKRRYFGSSQRAIIVAYKDGVKKFNECKQRYYDQ
>NC_009633.1|WP_011971610.1|488685_489777_+|dipeptide-epimerase
MKIIDIKVGRILIPLKKPFKTALRTVEHVNNIIVKIETDTGHVGYGEAPPTGVITGDTRGSIAGAIKEHIKNNILGMDIANFEEIMIRLEKSLVKNTSAKAAVDIALYDLFGQLYNAPVYKLLGGYRKEMTTDITVSVNDPEEMVKDSMDAVSRGFKTLKIKVGKNINLDLQRMDAIREAVGDDIHLRLDANQGWSSKEAIYAIKKMEDKGFNIEFVEQPVKAEDLEGMKAVTENVSTLILADESVFSPKDAIEIIRNRAADIINIKLMKTGGIRNALRICAIAEMYGVECMIGCMLESKLSVTAAVHLAAAKSVITKVDLDGPLLCKEDPIEGGAIFQDYKITVSDDPGFGFKNIDGIIWDS
>NC_009633.1|WP_011971611.1|489808_490738_+|LD-carboxypeptidase
MLKPKALKKGDTIGVIAPSSPALPEKVTGANKKLEEMGFKVKMASSCYETHGYLAGQDKLRADDLNDMFKDKEIDGIICLRGGYGAPKIVDKIDYEAIKANPKVFVGYSDITSLHIAMNQISGLVTFHGPMAATDIAGGLDDFSEKEFIRAITNPEPMGMIQNPNGIKVQTLVGGEAKGTIIGGNLALLTATMGTPYEVDTKGKLLLIEEIGEEPYRVDRMLTQLALGGKFKDAAGIILGDWNDCDPQKHKSSLSLMEVFKEIIVPFGKPTIYDLKAGHCRPKVTVPFGVNAHLNADTGELVMEESATI
>NC_009633.1|WP_011971612.1|490844_491831_-|membrane-dipeptidase
MDKKKIIEDMIIIDGHTDIPRDVYLREKKGEENVFKENHYLQLKKSGVNIIFANIFTKCPPRDSMKVAMLHIENLLGTIAKYDDVVLIKNKSDLDFVLKTEKLGIVLSLEGVEPLDSSLALLNIYYQLGLRAGMLTWNSANEFASGADHIEGGLTDLGKLTIEKMNELGIIVDVSHLNEESFWDVLQLNKRPTIASHSNAKALFNHPRNLTDQQMLAIAKNGGVIGAVSYFSKVDKENPDKIRHSDDDTETIDDFIKHIEYMVNLLGYDHVAFGFDFNIYLGDFGVEGLESAENIKDVIALLIDRGHSIEDIRKIAGGNWIRILNTIL
>NC_009633.1|WP_083760803.1|491986_492127_+|hypothetical-protein
MKQYEKILIIYTLNKVGGNKTKASEILDIKRQTLYNKIKEYDIGNS
>NC_009633.1|WP_011971613.1|492142_492961_+|MerR-family-transcriptional-regulator
MKYSIGQFAATLGVTVDTLRLYEKYGIISPIKNSENNYRYFNDLDARNLLTSRWYRSIQIPLQDAAILTQNASLDNIAEKVNETQLNLEAEIKKSTMLLNKIVGINKELKEIKTEINKCKIKAMPGMYRLKQTKGNVLIQEDFLRDLVDTWMNALPYTFFSFRIEKKEIVSLKKAFEYSWGLAIFEDEIGCFDVKMNENVEYISPKVYLSSIILSSQGEHITRDSIQFMMDYIKENNYKITEDIIGKIILTEKINGKNKSYLELNIPIQSHE
>NC_009633.1|WP_011971614.1|493221_495150_+|FAD-binding-protein
MKKKHIIKRLSIMSFYMLLIVLMMSGCTQQETNSIQASGYTAGTYAAEADGYGGPVKVEVTFSETEITDAEILSHSETAGLGDAALERMKEQILVGQTLAVDTVAGATISSSAMIAAIEDAVQQAGGDVEALKANGVEKPSEGKIEKLEADVVVVGAGASGVSAAIAAADEGANVIIIEKTGAIGGASNLSWAGKFLNSSAAIEDELIIDEEKEIAEWIENNHWRVDAAVIRQYVTQSGETYDWLTEKGYMTQYINFAGEQMHMLPPYETRQETLREMLAESVEKQDGQVFTETAAKQLMTNQAGDVVGVIAEKADGTTLEITAKSVIMATGGYGANAEMVKEYFGFEGVNGGLGQNIGEGIKMAWEAGARVPDNIGGQMLHQTLARATNDLKTEYESFEASYPLMLTYLPNFMNVGTSGARFRDEAATLKAVAAANTSAFHGPYHYVIVSQLQLDSLMAEGMNGVKAPKLPGMPPEFYMDFSDQFTLDNPWENADKVFDSMVEKGHGFKGNTMEELAENAGMDVAVFVETLKNYEEATKTGADTEFGKTADYLISMGEEGPYYAIIAEINNLGSIGGIVVNRNFQVLNEARVPINGLYAVGVEAAGVLYNDTYVGNGVGIGYAFTSGRLGGMQAASHVLGK
>NC_009633.1|WP_011971615.1|495475_496228_+|nickel-pincer-cofactor-biosynthesis-protein-LarB
MDIHELLKKVKNNEMDIESAEALLKKLPYEDLGFAKLDHHRKLRSGFGEVVYCSGKSTEHLIKIFQSFNEKKVDILGTRATKEQFQAVKAIVEEAEYDELSRIIKVVRSDIKKIGLIAVCTGGTSDIPVAEEAAQTAEFFGSNVMRIHDVGVAGIHRLFSKMEEINKANVIVAVAGMEGTLPGVIAGLVDKPVIAVPTSVGYGSNFNGLSALLTMLNSCAEGISVVNIDNGFGAGYLGTQINRLAVKGSE
>NC_009633.1|WP_011971616.1|496220_497486_+|nickel-pincer-cofactor-biosynthesis-protein-LarC
MSNQLYLECYSGISGDMAVSALLDLGADVDVLKKSLHSLNLEGYEINIGRRQKCGIDACYFDVVLEGEANHHHDHQEKHDHHHGGHPVHRNIKDIYEIIDNSQISDRSKILSKKIFHVVAKAEAKAHGIAIDEVHFHEVGAVDSIVDIVAAAVCLDNLEINEVMISDLYEGSGHVKCQHGVLPVPVPAVANIVMDNGLNLRITDTRGELVTPTGAAIAAAIKTKDTLPASYGIKKIGIGSGTKDLPKANILRAYIIEDNRNYPKKTVAVEDHIDSLDDGEAWVLETNIDDATGESLGFTMERLLENGANDVFFSPIYMKKNRPAYKLSVICTKENVKIMESIIFKNTTTIGIRKHKIRRTVLKREVTTIDTKYGQVRVKVCEFENETYYYPEYEDIKRICNETGLGFQRVYDEVEKTKTVG
>NC_009633.1|WP_011971617.1|497535_498348_+|ATP-dependent-sacrificial-sulfur-transferase-LarE
MLLQEKYEFLQNYIKNLGSLAVSYSGGVDSTFLLKVAYDVLGDNVIAVTATSSTYPQREFEEAKRWIKDIGAKHIIIESEELDIDGFSENPINRCYYCKSELFTKVREVAVENNIEYVADGSNQDDLGDFRPGMQAASELKVVSPLREAKMTKDEIRAISKQLDLPTWSKPAFACLSSRFPYGHQITREKLTMVEQAEDYLYGLGFRQLRVRHHEDTARIELGESEFDRFINKDLMRQVGKKFNEIGYTYVALDLNGYRTGSMNEVLKDI

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Crispr_ID: NC_009633_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_3

556712-556840

Orphan

Consensus_repeat	Method
ATTTAAGTGCGCCATGAGTCGATGCAGTAGCATCAGACGAATTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_3

>merge|NC_009633|3|556712-556840|CRISPRCasFinder
ATTTAAGTGCGCCATGAGTCGATGCAGTAGCATCAGACGAATTTTATTTAAGCACTTGAAATTTTAAACAAAGCCCGTTTTAAATTTAAGTGCGCCATGAGTCGATGCGGTAGCATCAGACGAATTTTA

>NC_009633|3|3|556712-556840|CRISPRCasFinder
ATTTAAGTGCGCCATGAGTCGATGCAGTAGCATCAGACGAATTTTA	TTTAAGCACTTGAAATTTTAAACAAAGCCCGTTTTAA
ATTTAAGTGCGCCATGAGTCGATGCGGTAGCATCAGACGAATTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_011971662.1\|550243_551284_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NC_009633.1\|WP_011971664.1\|552515_553244_+\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|378309
NC_009633.1\|WP_011971678.1\|565340_566498_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NC_009633.1\|WP_041720270.1\|554864_555089_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_011971676.1\|561784_562747_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366659
NC_009633.1\|WP_011971667.1\|554572_554884_-\|YbjQ-family-protein	unknown	unknown	gnl\|CDD\|376657
NC_009633.1\|WP_011971669.1\|555107_555374_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225225
NC_009633.1\|WP_011971673.1\|557741_559028_-\|nickel-dependent-lactate-racemase	unknown	unknown	gnl\|CDD\|370728
NC_009633.1\|WP_083760805.1\|566551_567406_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_009633.1\|WP_157047136.1\|556424_556637_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_011971677.1\|563102_565271_+\|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase	unknown	unknown	gnl\|CDD\|236506
NC_009633.1\|WP_011971670.1\|555524_556361_+\|protease-complex-subunit-PrcB-family-protein	unknown	unknown	gnl\|CDD\|371178
NC_009633.1\|WP_011971665.1\|553417_553774_+\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|311960
NC_009633.1\|WP_011971663.1\|551513_552341_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223404
NC_009633.1\|WP_011971672.1\|556953_557577_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NC_009633.1\|WP_011971681.1\|569180_569891_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_009633.1\|WP_011971675.1\|560689_561643_-\|threonine/serine-dehydratase	unknown	unknown	gnl\|CDD\|107205
NC_009633.1\|WP_011971666.1\|553837_554464_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_009633.1\|WP_011971682.1\|569883_571275_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_009633.1\|WP_011971680.1\|567628_569026_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_011971662.1\|550243_551284_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.41801e-76
NC_009633.1\|WP_011971664.1\|552515_553244_+\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|378309	pfam09922, DUF2154, Cell wall-active antibiotics response 4TMS YvqF.	2.68142e-24
NC_009633.1\|WP_011971663.1\|551513_552341_+\|hypothetical-protein	gnl\|CDD\|223404	COG0327, COG0327, Uncharacterized conserved protein [Function unknown].	1.01017e-08
NC_009633.1\|WP_011971676.1\|561784_562747_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.34004e-20
NC_009633.1\|WP_011971667.1\|554572_554884_-\|YbjQ-family-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	7.27355e-38
NC_009633.1\|WP_011971669.1\|555107_555374_-\|hypothetical-protein	gnl\|CDD\|225225	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown].	4.83769e-10
NC_009633.1\|WP_011971673.1\|557741_559028_-\|nickel-dependent-lactate-racemase	gnl\|CDD\|370728	pfam09861, DUF2088, Domain of unknown function (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.	6.62196e-97
NC_009633.1\|WP_083760805.1\|566551_567406_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.18488e-27
NC_009633.1\|WP_011971677.1\|563102_565271_+\|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	0
NC_009633.1\|WP_011971670.1\|555524_556361_+\|protease-complex-subunit-PrcB-family-protein	gnl\|CDD\|371178	pfam10648, Gmad2, Immunoglobulin-like domain of bacterial spore germination. This domain is found linked to the GerMN domain pfam10646 in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.	4.86855e-27
NC_009633.1\|WP_011971665.1\|553417_553774_+\|DUF882-domain-containing-protein	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	2.1667e-29
NC_009633.1\|WP_011971678.1\|565340_566498_-\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	3.2763e-87
NC_009633.1\|WP_011971672.1\|556953_557577_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	1.32589e-71
NC_009633.1\|WP_011971681.1\|569180_569891_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.47168e-86
NC_009633.1\|WP_011971675.1\|560689_561643_-\|threonine/serine-dehydratase	gnl\|CDD\|107205	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.	6.30571e-118
NC_009633.1\|WP_011971666.1\|553837_554464_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	9.07095e-71
NC_009633.1\|WP_011971682.1\|569883_571275_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	3.34989e-54
NC_009633.1\|WP_011971680.1\|567628_569026_+\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.64566e-107

>NC_009633.1|WP_157047136.1|556424_556637_+|hypothetical-protein
MMRVKKNQPKRAMDENFFKEMNYELAGDIGAIDNEDMVNNRKLKSNQTEKNNEKEKEKIKNRVKIPDSCD
>NC_009633.1|WP_011971670.1|555524_556361_+|protease-complex-subunit-PrcB-family-protein
MKKILFLIISALLIFALLGCAQESEPPPPEEPIEEEDVIDNGESEEVVPDEAHTIEDNLKDDIEIFGEEEVLEEAGEWFAQFDEAEEGAYVYQHPDMTYIKINAGERRTGGYGIHVKDYDEDAYPRLVTIEIREPGEDEMVTQALTYPSIILGIESEMASQYEVQTVDGNVFDLEDKLVFAKFEMPEADEEIDNPVPVKGKIIAFEGAFVLRILDDEEELIHEEHLQADTGGPNWGSFDEEIEYPEPETQGGSLEIGEYSAKDGEYIMREKISVKFNK
>NC_009633.1|WP_011971669.1|555107_555374_-|hypothetical-protein
MPYFVAILEILDPEKDAQILDIHKAYLQKYIAEGKIFAKGPFTDHTGGLIIYQTNSYEEAKTLAENDPVIKENTRKMIFKQWKSTLPE
>NC_009633.1|WP_041720270.1|554864_555089_-|hypothetical-protein
MKYIAPILIIILIAGLIGLYGFGVLFVLDSMNAPLLITIIISIVFVGLIASLGYTLIQRIKEIRKEDDDDLSKY
>NC_009633.1|WP_011971667.1|554572_554884_-|YbjQ-family-protein
MILVNTDYISKKELETLTIVKGSTIQSKHLGKDILSGFKTLVGGELTAYSDMMNEARAIATKRMVAEAQGVGADAIINIRYASSAVMGGAAEIMVYGTAVKFV
>NC_009633.1|WP_011971666.1|553837_554464_+|histidine-phosphatase-family-protein
MLNLYIVRHGETEWNTQRRMQGWQDSNLTERGIEDARALHDHLIKVEFDSIYASPSSRAFKTAELIKGERKLKIIKDDNIREIGLGNWEGKTTEEIEQMDPKAYQHFWKAPHLYNRESVETFTCVQKRALKTINKLIEEESAGNILIVTHAVTVKTIMGHFQKQSLEKLWEPPFIQNTSVSLIRIENNLPSIVLYGDTSHLQEAYETY
>NC_009633.1|WP_011971665.1|553417_553774_+|DUF882-domain-containing-protein
MNNIQISKNFKLKEFQCGDGGYQVRLDSQVLKKLQELREQTGRPVLINSGYRTPSYNQQVGGSPRSQHLLGKAADIMVPGMELESLARVAEGIGFGGIGIYRTFIHVDVRSEKVRWKG
>NC_009633.1|WP_011971664.1|552515_553244_+|cell-wall-active-antibiotics-response-protein
MEMSFLKSRWIVGVLIIFLGVIALLNNFGFTELRLSDMISTYWPILLVLWGIDALISRGSKGEVVSGLILVFLGVTFIGRNLDLFYLDLSLFWNLFWPVIIILVGVSFLKGSNKVKKSNMAIMGGIERKRDRWDLESSSYFALMGGVELDLTLANIPDEEVILDLTAIMGGIDIWVPDNIQVICEGTSILGGIELLDRATGGIVASTKASQNGDGESKKCIKIYSRAIMGGISVQSKKNIAI
>NC_009633.1|WP_011971663.1|551513_552341_+|hypothetical-protein
MNTKEIMDIALELAGLNEIPADSGIIVEGEHIKKVAIGVDMELAEMLLARDLGVDLVITHHPSGGSPRINLHKVMDNQIDSMIRAGVPINKAQKALKEKKDEIERGLHVSNYDRAVSAAKLLKMPFMGIHTPTDILAERKVQGLLDEKLKEQPKATLQDIIKALETLPEYQRTMAKPAVRVGAKDDYAGKTFVTMAGGTGGGKNVIKAYFEAGVGTLVAMHMPEDVIKSVREQNIGNVVVAGHMASDSVGINEFAKALEEKGIEVIRMSGLIDPT
>NC_009633.1|WP_011971662.1|550243_551284_-|HD-GYP-domain-containing-protein
MPIIPTTHLTPGARTSRDIVAKNGTKLLSSGTVLSQYIIQYLNRWQIKSVYIQEESIEIVSTRKRNQQQSTQLYESTIAATEGIMVRFKGISRLKLKEIRKIIDDISSFSDISLTLDAITQINNQSKYTYHHSVNVAIYCSFIGKSLKLEDALLKKLIYAGFLHDIGKTQISPSILSKPGKLNDQEFQEIKSHPIYGYHLVRENTLFSHDIALGVLQHHEREDGKGYPLGINGEQIHLFGKIIAVADIFDAMTSTRPYKGKQSALKIAEELMNDYFGVLDQKIVRTFVSKLSDFYIGSRVILENGDVGEIIAKNPDSPMKPLIKIGNRFIDLSVTPSMKILDILVF
>NC_009633.1|WP_011971672.1|556953_557577_+|MBL-fold-metallo-hydrolase
MKFEKIVVGIEEANGYIFYDENSLEAVVIDPGDEAKTFMKYIDKRYLKPIGIILTHYHYDHIAAAEALKKKYQCPINAHKKEIDGLKDPEINYSKREYAKEVSITPDVLLSHGDTISVGALQLEVIHTPGHTPGSICLAVKDEKVIFTGDTVFSDALGRTDLAGGSEAMLRKTIRNKVSKWDDDVRVYPGHGESALMAQLRSRREIK
>NC_009633.1|WP_011971673.1|557741_559028_-|nickel-dependent-lactate-racemase
MKTVEMKYGTGSTNVSIPAEHLLSIIKNNPMNINGTEEEIILNSLEKPVGTPKLREIVHPGEKICIVFSDITRAWQKMSTFIPYIVAELNQAGIKDEDILFISSTGSHRGHTKEEHSWLLGADITSRCEIIDHDCLNEENLVYLGTTSFGTPVSVNKRAMECDHIVLTGAIVFHLLAGWGGGKKSVLPGICSYNTIMTNHALSLSPNVGEGSNPLVRSGNWVDNPLHEDMLEASSFVNPSFMLNVIVGADGSICHAVSGHYVKAHEAGCQVVQEMDGVEIQEKADLVIASAGGYPKDINLYQTSKTLINAKEAVKDGGTIIILSQCIEGFGNDHVQEIIQNYDTVVERENALREDFSIAKYIGYFVSEAAERFNLILVSEMEQSLVERANIRVVKTIEEALTLTYKEMGKNLKTHLMPQGANTLPQVK
>NC_009633.1|WP_011971675.1|560689_561643_-|threonine/serine-dehydratase
MISVQDILNARERIQDYITVTPLDFSMGLSTKTMKIYLKLECQQKMKSFKTRGVLSKMTSLTNEEKKKGVTTISSGNHGAGMSYASSLLDIQRVKIFVPETTPLAKVKKINYYGAEVVQVGRHYDETHKIAMEIIQEEKLTFIDSCSDTMVIAGQGTIGLEILEQNPDIDVIVVPIGGGGIITGISIAAKHINPNIQVIGVQPTACPAMVKSLEDKTCYLEYPSEESLCDALVGGVGEIPYKMAAQCIDDIIVVDEVTIKQATAMLLTEEKVVAEPSSATGVAAIMLRQELFEGKNVAIVITGGNLDPALMKRLLTE
>NC_009633.1|WP_011971676.1|561784_562747_-|LysM-peptidoglycan-binding-domain-containing-protein
MYYSQAPCPTGTISYTIQSGDTFYAIARAYNISLDVLLAANPGVNPDRLMVGQRICIPISTPPSTGCPVGTVPYTIRAGDTFYSIATTNNIPLDALLTANPGVNPDRLMVGQVICVPRNTPPPTTACPTLRVGSRGPDVERLQRLLRDNGYDPGPIDGIFGTRTQLAVIAFQRDLNIVADGIVGPRTWTGLGVDCTAPPVPPTPPSPTCPTGTTPHTIVAGDTFYNLAIQYNTTVDAIRRANPNVNPDNLQVGQRICIPVTTPPSPTCPTGTAPHTIELRDSFYNLAIQYNTTVEAIRRANPNVDPQNLIIGQIICIPLP
>NC_009633.1|WP_011971677.1|563102_565271_+|bifunctional-2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase
MLQKGKRTCKKAFSRTTIMVLAFVLIFALVAVPQVSAAEKVVHELVIMGTTDIHSYIMPYDYLKDAEAPKIGLSKTATLVDQKRVQHANTLLFDAGDAIQGSMLAYLEAVVEPLKEGEVHSTINAMNIMEYDGAVIGNHEFDFGLDFLQRAHEDAQFPIVSANIYKVGTDETYFTPYVILDREVDGKAIKVGVIGFVPPQVTTWSKLHLEGKVEAREIVETAEKFIPMMREDGADLIIAVGHTGIDISENASENVGYQLSQVEGIDAMILGHQHRLFPSETYADMEGIDVEKGLINGVPTIMPGSWGNHLGLIKLELVHRDGVWEVIDSQSIVEGVEEVEAKPSIVEFVKERHTATIEYVNGAVGRTVANLNTFFGRVMDNKVTKLVNDAQLWYANNFFKGTEYEDANLISSTAPFKMGRQGPTYFTNVEAGGIAIKDVADIYIYDNTLHVVKVNGEELLQWIETAADNFEQIDPSKTEDQVLLDYAFAGYNFDVFTDIEYQIDVTQPSGSRVVNLSYEGEPVTAEMEFVVVTNNYRATGGGDHLKGAEIILSSTDENRNIIIDYIREMGEADPQEENNWSILPIETAGRLIFRSSLLGKDYIESEGLTNVSYIGEEEGWGLYTYNFPPVVATEEVIEPEVIQEEVVEVEVTIPEVVQEVVEESATLSETARVHVVQSGDNLWNIARKHYGSGTYYYQILEVNQEIINQAALIYPGQQLMLP
>NC_009633.1|WP_011971678.1|565340_566498_-|YibE/F-family-protein
MRSLKQFFTIFFVIIFFLSTPMVSWANTDAPLQPLSEVVRGRIISIETPEVDEEKHGSFTTDVQSVLVQVTQGEFRDSEITIDHTLSGNMARDFYYQEGDRVLLWIESTNGEMSRAYIREVTRDHYLMYLTLFFIFSLLLIGGKKGAKAIITLCITGLLVIKVLLPLILEGFNPTIVTIVIASIIVSSTLIIISGFNRKTYAAIIGTIGGVIIAGILASTMTSLTRLTGLSNNEAQTLMYLPQGTRFNFQGLLFSGMIIGAMGAVLDVGMSISSSMDEISRANPSLTTKELIGSGLNIGRDIMGTMSNTLILAYTGASMHLLLVLSAYDVPLSRIMSVEPIATEVIRILSGSIGLIYAIPLTAIAAGFLYNSPALQQKKPIKNKV
>NC_009633.1|WP_083760805.1|566551_567406_-|AraC-family-transcriptional-regulator
MNMKKTNIDFDYPDRSFHFSAREVFGHYTMLSNHFHDQYEIYYLLSGERHYFIKDRIFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDYLLSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGFQVALQALLMDLLVYTSRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLSRTFKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFSPLNYRRLNTE
>NC_009633.1|WP_011971680.1|567628_569026_+|MATE-family-efflux-transporter
MSIQLNKKDSKRRKFILEGDLWQVVLSISMPLAIYNGFNHLFSFLDTMMAAHIGSEVVSAISYLVQIKTMIMAIGAGLAIGGGIIIARYYGADDIRNAKKCANTLVFLTIGISLILLAVLLPFTKQILRLANTPEELIAVGSGYFTVEIIMIISIFINNVYIAIEKAKGNTKSILHLNLMVLAVKLALTALFVYVLNYGITMMAMATLIAHLMLTVFAMTHMLRPDNVFRISFKDVDLSLKFIWPILVLALPIFFERFTFSFGKVIVNSMSAFYGSMVVGALGVSNNIGGVIISIGNGFQEGEASIISQNLGNENFERAVNVFKKTLIVSLVLGGMGLLLTTVFMDQIIRVFARGDLAFAEEITNVFKYERWAVVTMTVSSAVMGLLYGFGYTKLSLVINFMRLFALRIPTLYLFQTFTNLGSESVGIAMLVSNGLIGVTSVIIGFVIIEKMKKEGRYHKIVTTH
>NC_009633.1|WP_011971681.1|569180_569891_+|response-regulator-transcription-factor
MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEKSV
>NC_009633.1|WP_011971682.1|569883_571275_+|HAMP-domain-containing-histidine-kinase
MFKSIFKKFLLTYMAISIISLLMVAGVASYFMEQEIYGQREQFLEQKALQVNRLFFQLEDNKISVDYFINMLNMIQTNDKIGISVILDEHKPANIEEFGRRPVSSNRSGTNHEMQENEYFIAYFESEEERDIQMMTVSIPLIIDDALMGEVLIYNPVANVELITANVNKSIFLTFIAISIPLALLLFFISRKFTTPLIHMNEVAHNISRGDFSQSVAVQGKDEVAELGHALNHMAFKIQGLEELRKDSIANVSHELKTPLTTIQNFIEGILDGVVPKDQEENFMEIALDETKRLGRMVEELIVLSSFEKKLVKLDVSPNNIGNLVDGVFLQMKFHLQEKKIRVEKRLDTTIIAEVDQERFRQVLINLLDNAIRHMPENGKIEVCLEKSLDKNFILEIHDSGPGIKEEHLPYIFERFYKADPSRKKSGGAGLGLTISKHIVEAHGGEINIKNGRDKGLSVEITL

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Click the colored protein region to show detailed information

Crispr_ID: NC_009633_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_4

782114-782217

Orphan

Consensus_repeat	Method
TGAAAACTGTTTAGAATAAATAATGGAAATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_4

>merge|NC_009633|4|782114-782217|CRISPRCasFinder
TGAAAACTGTTTAGAATAAATAATGGAAATAATAGAGTATAATGGGGACGGTTCTCGTTGCTAACCTAGCCGTGAAACCTGTTTAGAATAAATAATGGAAATAA

>NC_009633|4|4|782114-782217|CRISPRCasFinder
TGAAAACTGTTTAGAATAAATAATGGAAATAA	TAGAGTATAATGGGGACGGTTCTCGTTGCTAACCTAGCCG
TGAAACCTGTTTAGAATAAATAATGGAAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_012062012.1\|785652_785850_+\|putative-motility-protein	unknown	unknown	gnl\|CDD\|379452
NC_009633.1\|WP_012062009.1\|784007_784184_+\|putative-motility-protein	unknown	unknown	gnl\|CDD\|379452
NC_009633.1\|WP_012062008.1\|783382_783694_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_009633.1\|WP_012061995.1\|773662_775144_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236084
NC_009633.1\|WP_012062006.1\|782649_782805_+\|putative-motility-protein	unknown	unknown	gnl\|CDD\|379452
NC_009633.1\|WP_012062007.1\|782990_783383_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|378048
NC_009633.1\|WP_012061997.1\|776186_776750_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012062010.1\|784207_784441_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012062001.1\|779135_780905_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_009633.1\|WP_012062000.1\|777855_779055_+\|flagellin	unknown	unknown	gnl\|CDD\|236344
NC_009633.1\|WP_012061999.1\|777446_777674_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NC_009633.1\|WP_012062004.1\|781694_781928_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012061994.1\|773151_773646_+\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NC_009633.1\|WP_012062014.1\|786166_786451_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_009633.1\|WP_012062013.1\|785873_786068_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012061998.1\|776958_777447_+\|flagellar-assembly-protein-FliW	unknown	unknown	gnl\|CDD\|237334
NC_009633.1\|WP_157047141.1\|784593_785463_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_009633.1\|WP_012062002.1\|781055_781427_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_041720313.1\|786437_786752_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_009633.1\|WP_012061996.1\|775189_776146_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181087

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_012062009.1\|784007_784184_+\|putative-motility-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	6.08966e-10
NC_009633.1\|WP_012062008.1\|783382_783694_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.23656e-14
NC_009633.1\|WP_012061995.1\|773662_775144_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236084	PRK07739, flgK, flagellar hook-associated protein FlgK; Validated.	1.07494e-174
NC_009633.1\|WP_012062006.1\|782649_782805_+\|putative-motility-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	0.000704289
NC_009633.1\|WP_012062007.1\|782990_783383_+\|nucleotidyltransferase	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	2.27644e-36
NC_009633.1\|WP_012062001.1\|779135_780905_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	9.93322e-13
NC_009633.1\|WP_012062000.1\|777855_779055_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	8.84291e-101
NC_009633.1\|WP_012061999.1\|777446_777674_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	4.62151e-29
NC_009633.1\|WP_012061994.1\|773151_773646_+\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	3.72635e-24
NC_009633.1\|WP_012062014.1\|786166_786451_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.87961e-07
NC_009633.1\|WP_012061998.1\|776958_777447_+\|flagellar-assembly-protein-FliW	gnl\|CDD\|237334	PRK13285, PRK13285, flagellar assembly protein FliW; Provisional.	1.62488e-67
NC_009633.1\|WP_157047141.1\|784593_785463_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	4.19668e-72
NC_009633.1\|WP_012062012.1\|785652_785850_+\|putative-motility-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	1.54344e-07
NC_009633.1\|WP_041720313.1\|786437_786752_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.30961e-12
NC_009633.1\|WP_012061996.1\|775189_776146_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181087	PRK07701, flgL, flagellar hook-associated protein FlgL; Validated.	1.8065e-107

>NC_009633.1|WP_012062004.1|781694_781928_+|hypothetical-protein
MEDQEQVKKEMEQQLEKIKYRIQMLDLIEEKLFQMRELAQRVIDEELSNEEIENINQQVKTLEKQFKLLNSESNGIS
>NC_009633.1|WP_012062002.1|781055_781427_+|hypothetical-protein
MKKEEIIVIKTSLELLETMEEGLVYIKGKLNELKTEETINVLLDLTNAFASIEQSINPILLKLEKNDMPIKTDVLRDALDVMIKEYENTKGQRAVEIMQFTLEPAFKNWKREVEETLRPYIVS
>NC_009633.1|WP_012062001.1|779135_780905_+|tetratricopeptide-repeat-protein
MKEKSKNIKDGIKNFIEQGHYQEAMSLLQKYEKVVPTDIDIYNLKAMIFILTGDLEKAKEILENGLKIKPLDFDILYNLGYIYEQKGEFLEAYYSYTTAQYNAENPQQIQDVIQALEGIKDYFAGRSIIIEEDGNKKIKTQVRYGTKVLEMKFDLQRIIERKTILEAITKHLDISNERILEIEFGTGLISKNLNFYGFDVTAIDSRKLALLEIISKEWQDNLFNPRQSKAQFYHNKLEVKHVALLSDYDAIILVPESEAWYEQYDQEELFYMIENIINRVKKQAFIRIPDLNIDKYKQLELLILEKARKAEKKVRLINIHEENESSEKILLIENKEERKYFSIPIALETINSKSDVIEVEIEKCRDKFAFGYEEHGWHPFVALAQEYLEKENLTYEESILKMYYEKFQPQNLQQALLDPKHSPLNPINKGWIGYPWTWNTRNKVIIDQKFGETRPGGNHFFGPNSHEFGKNEFQRIIINCELIKSVGYQPEGFADGYISGYMLKTKGDYRFIVTEGQHRMAALVALGYKTIKCRFIQKEEYPRVVNIKDSKRWPQVINGAYSKKVAEKIFNMFFENDGRERAKRIGLLD
>NC_009633.1|WP_012062000.1|777855_779055_+|flagellin
MRINNNLMAMNTHRQLGSAQANGAKSMEKLSSGFRINRAGDDAAGLSISEKMRGQIRGLDQASRNAQDGISLIQTAEGALNETHSILQRMRELSVQSSNDTNVQEDRDALQAEMDQLATEITRIADNTEFNTKNLLGGEFEGKFHIGANEGQNMELKIAAMDADSLKVQGEVYEAQDLDNVDNVQIQSRTGEDVTVEFAAIQVADGAAVTSTTAAWNTDGDVLTVTLAQAAPTSTGSTGLVQASDQDIMNAINAAGGEYGLSAIANGTVSGTAITNGSAGIADVDLNNWELDVEASAASGIDISSQAKADEAITTINTALERVSKERSMLGAVQNRLEHTISNLDNVSENLQASESRVRDVDMAKEMMELTKQNILQQASTAMLAQANQAPQSVLQLLG
>NC_009633.1|WP_012061999.1|777446_777674_+|carbon-storage-regulator-CsrA
MLVLSRKNNESIMLGKDIEIKILGIEDGKVKLGIEAPKDVEIYRKEIYLEIQEENKAASEQKQDWSQLKGLFTKK
>NC_009633.1|WP_012061998.1|776958_777447_+|flagellar-assembly-protein-FliW
MILQTKHFGEIEINQEEIIRFPDGIPGFDDYTQYIFIENPDKEVPFHWLQAVEDGALAFVITNPFLFKPDYDFEISKNVVEKLSIEDQSDLQVYTIVRVPENIKEMTANLRAPLVINTKNKKGKQLMLDSEVYHTKHYILEEIQKMQEQSNQTSPAAEGGRD
>NC_009633.1|WP_012061997.1|776186_776750_+|hypothetical-protein
MNLRIDMQNAQIGIQQQMGQLNIQQNHFPMTLQQTEPKLSLQTADAELTIDQQRCFAEVGLKNDRQLTATYAQKGNRTAQQAIARIAQEGKQMANIQNGKVIARQAKQSQGTQQRQLNYDMAPKSRPDINVTPKEVQINFQKGEVSVNVQNPGAQIDYQQGDLQVYLKQKDFINIEYIGQNLNTLGG
>NC_009633.1|WP_012061996.1|775189_776146_+|flagellar-hook-associated-protein-FlgL
MRITNNMMISSMMQNLNGNLLRMDQKQLQATTGKRIHKPSDDPIGISRSLKLRSDIKELEQYKKNVDDTISWLETTELAVHNVGAAVERLRELTVQASNGVLTEDETKKIKAEVVELKNQIISLGNTTYGGKYVFSGKKTDQKLFNDAGEYNVSNLSIDHAPDAIDDKIKFNVGMGETIEINVVGFELFGGDEVSHEDDVVGVEGGEQAGIIKMIEDIEAKLEAGDTAGLTDDLQNIDIYYDQYSTIRSEIGAKVNRMELVENRIVDDRLNLMELQSKIEDADVAEVYMQLMAEENVYRSSLAIGSRIIQPTLMDFLR
>NC_009633.1|WP_012061995.1|773662_775144_+|flagellar-hook-associated-protein-FlgK
MRSTFSGFNTATSGIFASQRSLDVVGHNIANANTPGYSRQRLEQAASTPMSLYGGKGMLGTGVDTVAIKQMRSEFLDFKYRDEVNALGYWETKEYGLEFIESIFNEPSDTSVATVTDELFAGFEELSKNPESITARTVVRERGIAFTNTMNQTYKQLEKLAKDVNSDINATVSSINSYADQIAELNKQIYRFEADGSSANDLRDRRNLLIDDLSKLVNVEVRDVNDGYGSSKMVVQINGQPLVNHDQAYKLDATATKSSTFDDEINMTEIKWANGSVVNQDSLKGELGALLTLRDGTTKDNKGIPFYIEQLNDFVGSFAKAVNGIHEDGLDLDGDEGVAFFTDGNTGDQITAKNIQISLEIDRDPRKIAAATMGELGEPVVGDGSNALRLTELRHAQMSFDNGEFKGTPEDFMISLIANLGVNTQEATRMASNQSILTNQIDRQRQSISGVSLDEEMANMVRFQHAYNASARMVTTMDEMIDVIINRMGTVGR
>NC_009633.1|WP_012061994.1|773151_773646_+|flagellar-protein-FlgN
MSKSIEQLKEALIQENKMYEAVLEMAEEKTEVIVQGQVKELEKITELEQQYMAKMGAFEKVRRSIFANMSEELGIKEPTSVSELLLFLKEPVGEEIDTLRNNLLETIEGLTKVNERNEKLIHQSLEYIHFNLKIMTDSNGDGNEYGHKANEKQKTKTNFFDMRV
>NC_009633.1|WP_012062006.1|782649_782805_+|putative-motility-protein
MNIAALSMGFNQMNIQQEASVSVMKMAMDSAKGQSGDLAKILGLIMMEIFH
>NC_009633.1|WP_012062007.1|782990_783383_+|nucleotidyltransferase
MDKDIRWKQRFSNFKKATEQLTEFIEKEELNKFEVQGLIQCFEYTFELGWKTMKDYLEREGFILKTPRNTIQTAFQSELITDGHTWIDALEKRNLMAHTYDEEKAAEAEMLIKERYYYIIVELCNKLEEL
>NC_009633.1|WP_012062008.1|783382_783694_+|nucleotidyltransferase-domain-containing-protein
MNTGLKEDDLKYIINVIKDFDEIEKAVVFGSRAEGSYKRGSDVDIAIYGEGVSFDTISTLKAKLEEEGPLPYFFDVVDYYNLENQDLKEHIDRVGKVIFPVNF
>NC_009633.1|WP_012062009.1|784007_784184_+|putative-motility-protein
MDIAALSMGLNQMKIQQEASISVMKMAMDAGKAPVEELTKMMEQSVSPNVGSNLDIKL
>NC_009633.1|WP_012062010.1|784207_784441_+|hypothetical-protein
MEDKEQVKKEMKQELEKVKYRIKILDLIEEKLFEMRELAQRVIEEELTDEEIENINQQVKTLEKQVKLLNSESNGIS
>NC_009633.1|WP_157047141.1|784593_785463_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MMKMKLLSPMNDFVFKALFGREDATSKQLLIELLNDTLRAKGEDLIASVKYLNPFNYKEYEFDKLSVLDIKAETEKGERVNIEVQVKPEVSYRKRSLYYWAKTYAETIGEAEPYEELKKTIVINIMDYDAIHESKKLHTHFKLLEREEHFTLTEDLQIHYLEVPKLAEAKQIEALEGIELWIAFLKEAGKAGNEEKIERLKRRSESMSKVIESLETVSADEKLLEAYRAREKARRDEISKLAYAKKQAKIETAEKAFRNGADLDFIAEITDIPLEELREIEKRVKSQQN
>NC_009633.1|WP_012062012.1|785652_785850_+|putative-motility-protein
MDIAALSMGLSQMKIQQEASMSVMKMAMDSAKAPVEDLAKMLDANTKMMEQSVSPSVGSNLDIKL
>NC_009633.1|WP_012062013.1|785873_786068_+|hypothetical-protein
MEDQEQVKKEMEQQLEKVKYRIQMLDLIEEKLFQMRELAQRVIDEELSNEEIENINQQVKTLEN
>NC_009633.1|WP_012062014.1|786166_786451_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MEANIRPSSDLRNHYNEIAKQCKETREAVIITVNGRGDTAVLGLQDYKQMRAELELLKTLTDAEEDVVKGRIGSMQDSFDDLRESLMKRNNEDV
>NC_009633.1|WP_041720313.1|786437_786752_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKMYKILRTDKAEDQLRDIIFYIADDSGDVEVALKYLDKIEAAINRLQEFPKSGSIPRYSILKKRGYRVVTVEKHLVFYRIDEEEETVIIYAIVDGRREYRNLI

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Click the colored protein region to show detailed information

Crispr_ID: NC_009633_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_5

1269827-1269934

Orphan

Consensus_repeat	Method
AGGCATGTGTCCCATCATAGGTGG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_009633_5

>merge|NC_009633|5|1269827-1269934|CRISPRCasFinder
AGGCATGTGTCCCATCATAGGTGGTTGGTAGGGTGGCGGCATACAGTGACCTGGCATCATTGGGGGAGAACCAGGCTGCATTGCAGGCATGTGTCCCATCATAGGTGG

>NC_009633|5|5|1269827-1269934|CRISPRCasFinder
AGGCATGTGTCCCATCATAGGTGG	TTGGTAGGGTGGCGGCATACAGTGACCTGGCATCATTGGGGGAGAACCAGGCTGCATTGC
AGGCATGTGTCCCATCATAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_049765210.1\|1268827_1269172_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NC_009633.1\|WP_012062468.1\|1267605_1267926_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375849
NC_009633.1\|WP_012062478.1\|1277940_1278258_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_009633.1\|WP_012062466.1\|1266155_1266875_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NC_009633.1\|WP_012062462.1\|1262103_1263786_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NC_009633.1\|WP_012062469.1\|1267935_1268772_+\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|225543
NC_009633.1\|WP_012062473.1\|1270671_1271010_+\|rubredoxin	unknown	unknown	gnl\|CDD\|238210
NC_009633.1\|WP_012062474.1\|1271256_1272882_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NC_009633.1\|WP_012062463.1\|1264082_1264835_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NC_009633.1\|WP_012062477.1\|1276957_1277683_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|273654
NC_009633.1\|WP_012062476.1\|1274084_1276748_+\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NC_009633.1\|WP_012062475.1\|1273221_1274040_+\|cyanophycinase	unknown	unknown	gnl\|CDD\|131124
NC_009633.1\|WP_041720422.1\|1279343_1279577_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379063
NC_009633.1\|WP_012062461.1\|1261245_1262103_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NC_009633.1\|WP_012062467.1\|1267023_1267452_+\|DUF1893-domain-containing-protein	unknown	unknown	gnl\|CDD\|378104
NC_009633.1\|WP_012062465.1\|1265152_1265896_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NC_009633.1\|WP_012062472.1\|1270184_1270415_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NC_009633.1\|WP_012062464.1\|1264839_1265148_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NC_009633.1\|WP_012062479.1\|1278278_1279262_+\|permease	unknown	unknown	gnl\|CDD\|223773
NC_009633.1\|WP_012062481.1\|1279778_1281653_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_049765210.1\|1268827_1269172_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	3.98552e-27
NC_009633.1\|WP_012062468.1\|1267605_1267926_+\|hypothetical-protein	gnl\|CDD\|375849	pfam18423, zf_CopZ, Zinc binding domain. This is N-terminal domain containing a mononuclear metal center for zinc binding found in copper chaperone CopZ proteins.	2.13796e-17
NC_009633.1\|WP_012062478.1\|1277940_1278258_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.67153e-16
NC_009633.1\|WP_012062466.1\|1266155_1266875_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	4.07671e-23
NC_009633.1\|WP_012062462.1\|1262103_1263786_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NC_009633.1\|WP_012062469.1\|1267935_1268772_+\|RNA-binding-protein-S1	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	9.55914e-72
NC_009633.1\|WP_012062473.1\|1270671_1271010_+\|rubredoxin	gnl\|CDD\|238210	cd00350, rubredoxin_like, Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.	9.86857e-10
NC_009633.1\|WP_012062474.1\|1271256_1272882_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	9.73716e-147
NC_009633.1\|WP_012062463.1\|1264082_1264835_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	6.4248e-10
NC_009633.1\|WP_012062477.1\|1276957_1277683_+\|HAD-IB-family-hydrolase	gnl\|CDD\|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI\|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI\|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	5.80173e-51
NC_009633.1\|WP_012062476.1\|1274084_1276748_+\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	0
NC_009633.1\|WP_012062475.1\|1273221_1274040_+\|cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	1.06756e-108
NC_009633.1\|WP_041720422.1\|1279343_1279577_+\|thioredoxin-family-protein	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	3.81895e-27
NC_009633.1\|WP_012062461.1\|1261245_1262103_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	1.17666e-146
NC_009633.1\|WP_012062467.1\|1267023_1267452_+\|DUF1893-domain-containing-protein	gnl\|CDD\|378104	pfam08973, TM1506, Domain of unknown function (DUF1893). A member of the deaminase fold that binds an unknown ligand in the crystal structure. The protein is ADP-ribosylated at a conserved aspartate. Contextual analysis suggests that the domain is likely to bind NAD or ADP ribose either to sense redox states or to function as a regulatory ADP ribosyltransferase.	3.22605e-59
NC_009633.1\|WP_012062465.1\|1265152_1265896_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	8.88406e-44
NC_009633.1\|WP_012062472.1\|1270184_1270415_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	2.90228e-24
NC_009633.1\|WP_012062464.1\|1264839_1265148_-\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	3.5589e-10
NC_009633.1\|WP_012062479.1\|1278278_1279262_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	1.44626e-69
NC_009633.1\|WP_012062481.1\|1279778_1281653_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	7.84885e-22

>NC_009633.1|WP_049765210.1|1268827_1269172_+|Asp23/Gls24-family-envelope-stress-response-protein
MEVTGEHGKIRIANDVIMLIAQEAVGEVKGIVSLSGGLPVGITEMFSKKTSSKKGVKIQNQETQVVINLAVVVEYGVIIPEVIRLVQEKVKRSIEAMTDIEVGRVNVFVQDIRI
>NC_009633.1|WP_012062469.1|1267935_1268772_+|RNA-binding-protein-S1
MSVEIGVKQNLEITEIDSDGIHLGDVLLPAKETEEELSVGEMLEVFVYTAAKGELLASLSEPFGQVGELAYLKVTALTSFGAFLEWGIEKDLFLPMGEQTCDVKEESHYLVKIYLDRTNRLCATMRVDDYLQAHPSYTPGEMVKGTVYGENERIGVFIAIEDCYYGFVPNAERYKTYGIGDQDEFRVIRIREDGRVDLSNKQVAHKQMDDDSEMILQEAIKQGGNLYLNDKSDPEMIMKRLNISKNAFKRAIGRLIKEKKIEQNDKGIRVLDENNTLD
>NC_009633.1|WP_012062468.1|1267605_1267926_+|hypothetical-protein
MSECKSRLVKKEKKCPLCHEQGNSLYYMVVEAIVKEELMSLIRKQYYYICHSKDCDVIFYNDEEDQIFLTQDVNLGADFQAVTKQGSNQCGKGHHGNCHSCNNNNK
>NC_009633.1|WP_012062467.1|1267023_1267452_+|DUF1893-domain-containing-protein
MLDLTLAQNELAEGGYSYVLVKDEKVISTSCDKGIQPLMDILLDEEKQMQGSTLADKVIGKAAAFLCILGEVKQVYAQVIGDCAKDVLEHHGIEVEYNRIVPYIMNRDGTDKCPLEKLVDHVEDPREAYEAIRDFMTKSVGA
>NC_009633.1|WP_012062466.1|1266155_1266875_+|HAD-family-hydrolase
MITTILFDLDGTLLPLDMEAFTKKYFKELGIKLKDYFTAEELTEKIWASSKYMIGNVDPAKTNEEAFFEKFAQLIIWDTEELSPLFKEFYITDFVKIKETTGQSQYIIKAIELLKQKGYQLVVATNPMFPRQAIEHRIQWAGLNRDDFVFITSFEEMHYCKPQIQFYEEILVNINEAPSNCMMIGNDLEEDMIAKQLGMTTYLIEEHLIQRSTNLENVDYRGNYEAFYEFVKGLPALSQ
>NC_009633.1|WP_012062465.1|1265152_1265896_-|AzlC-family-ABC-transporter-permease
MNRINKTIDISQNLHPKSINALDDFKTGFKKALPIIIGYFPIAISFGVIASQSGLSLFHMTFMSLVVYAGASQFMAANMLMMGALGIELIIATFILNFRHFIMSFSLMKTLNTLPKSWKTPLSLGVTDETFAMISLLSKQEDQPISHHMTLGIMLGSYISWVIGTFFGGLLGMFIPAMISDSMSIALYAMFIALLVPAITDQWKVGIVAAASGLFCWFFSLFLGSGWAIVFATLIGSFIGSFLTLEE
>NC_009633.1|WP_012062464.1|1264839_1265148_-|AzlD-domain-containing-protein
MELFWIISGMSIVTIVPRILPSFIMDYLSLSPFINRWLKTIPYAALGALIFPGVLSVDPQVPLLGLIGGIMAAILAYFKLHILYVILGSIFSVMLLKIIGVT
>NC_009633.1|WP_012062463.1|1264082_1264835_+|metal-dependent-hydrolase
MLGRTHVALGLMTSLGIAVLLGNPFMVESFNTIALLVAVGGALLPDLDMGTSSLAGKFGLLKAKHIKKIWIAILTTLSIGTLFFLKDTPIFYGIALILFLGFIFAKQFAQKGYYMMRNFVQSMTAITVMIGAYYYEHYPLIWIGVILMILLLVKHRSFSHSILFLIGCTLVVRQISFFYGDIDYSLIFGVSMGSHLLGDMLTKAGIGLFIPITHKRIKFPFTIKTGGWVENIVFMGAFLVIFQIIREIAF
>NC_009633.1|WP_012062462.1|1262103_1263786_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MKYNLLIGGSAGQGMDTLSAMLEKTLKRKGYHIFTNKDYMSRVRGGHNFIQIRFGTEPITSHGDTLDFIIAFDKATIDLHSPRLRKEGKILCNENVAKAQGNIIALPLQSTAKDAGNPKVFTTVTLGAVLKVFNLSLKESKELLQQFFEDQVLEQNLLALEKGYDLLDSQVSLEAPQKDQHILISGNEAIALGALAGGVTFYSAYPMTPSTSVMSYLAKKQQEAEIVVEQVEDEIAAINMALGASYAGVRAMTGTSGGGFSLMTEALGLAAITETPLVVINVQRPGPATGLPTRTEQSDLSFILTASHGEIPRMVIAVRNPEDAFYQTVRALNIADQYQMLVILMSDQYLADYTQTIKPFDFDKLTIERHIDDGGSLGDDEVYKRYKLTENGISPRLIPGKVAGQIVLVDSDEHDEYSHITESAEVRVDMMNKRMKRMNLIKNEVLQEPDYYGVTNPETLFLAWGSIEGPMKEAIGNLEAAGHAVGALVFGDLWPLPTKELEKYASQSKRIINVEQNYTGQLARLIRQETGIQCSHSILKFDGRQLSGQEITNRVIKEVL
>NC_009633.1|WP_012062461.1|1261245_1262103_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MIDKKVFESHDEKAWCPGCGNHGILEALKQALAELGKEPHEVVIASGIGQAAKTPHYINVNGFNGLHGRAIPPAVGAKIANKELTVIINSGDGDSYGEGGNHLLHNIRRNVDITHFVHDNQIYGLTKGQASPTTAQGQTTSIQTGGVVVNPLNPLAFAISLGCTFVARSFAGDKDHLVPIMKAAIQHKGYALVDILQPCVVFNKVNTYQWYKERVYHLDEGYDVTNKMAAFQKSYEWNEGIPMGIIYQEEKETYIDRVATLRDGSPLVNRTLDPKKAERFLEDFR
>NC_009633.1|WP_012062472.1|1270184_1270415_-|acyl-carrier-protein
MLFEKIRDLVAEQLGVDDASIITLSTSLLNDLDADSLDAVEIIMAIEDEFGLEIPDEEAEGFKNIGNIVEYVEAHK
>NC_009633.1|WP_012062473.1|1270671_1271010_+|rubredoxin
MRLYKCQVCNYVHDEEAPEKCPKCGAPREKFNDLSEEQITLVERSVYSNSLHMELYTLLQQMSEIADAGIEDDLDPGCVAIFKKTEIFSELMKRMIQAELEIHMKKGKWGKG
>NC_009633.1|WP_012062474.1|1271256_1272882_+|Na/Pi-cotransporter-family-protein
MEIFFGVLGGLGLFLYGMHVMSTGLQKAAGDKLKSIIGMLTSNRSMGVLVGAGVTAIVQSSSASTVMVIGFVNAGMMKLTQAVGVIMGANIGTTITAQIISFKIEKYAPLIVGIAVVIWLFTNNRKVKQLAEAFIGFGILFIGMQMMGDSLRPLREYEGFRTLLVSFGETPFLGILAGFAITVAVQSSTASTGILLALSLEGLIPISSGLPILFGINIGTTVTAILSSIGANRTAKRAAAFHFLFNIFGTLIFIFALQYPLLHIVTRLNPGTSAYDVTRQIANAHTIFNIANTLILLPFAGILVTLAKKMIPGEEEGSQGIKYIDDRILETPSIALASSIKETLHMGRVARNSLTNALEGFYERNQSKIDESFNIEKNVNEIDRELSDYLVKLSNTNVSVENRETVDGLFNTINDIERVGDHAENLAELAQYRLDNQLDFSDYAIEELKNMSDIVVKAYEDSLTSMKELNGSLAMKVIEAEGQIDHLEKTLRANHIGRLNARQCIPGSGVVFLDIISNLERIGDHSSNIAMAVLDRVKANR
>NC_009633.1|WP_012062475.1|1273221_1274040_+|cyanophycinase
MEKMENVELIIIGGGEDKKADQEILKEVVHSAGGESAKIAIVTTATNYPLEVGEEYRKIFYDLGVDEVQTINITNRKDANRKQTIKVLEGVDCIFFVGGDQLRISSILGGTEVHNYMKKAIKNGVVIAGTSAGASMMSEIMVVEGADEEAPRKCTLKMAPGMGLLEGAIIDQHFNQRGRIGRLLAAVAQNPHILGLGIDEDTAITVNDQREISVIGSGVVTVVDGLQVNYTNISEKYPDEPLAITNVKVDILPSGYGYHIGNRRAIIRENTQ
>NC_009633.1|WP_012062476.1|1274084_1276748_+|cyanophycin-synthetase
MKLVSTRVYLGRNIYSHWPVVRIDVDLEKYVNIPTCDIEGFNEKLLTLLPGLREHKCSPGYEGGFVERLNRGTYLAHVLEHMALDIQNKLGYRVTFGKTRYLEGETIYCLVFTYEDPIAGLESGKLAFNIIDSLLNNKAIDLEQHLNGIQGLVSTSTLGPSTAAIVEEAKKRDIPVTRIGEHSLVQLGYGKYGRKVQATVTDQTSCVAVDTACDKVLTNHILRSVGIPVPFGKVVTAREHAVEVAEEIGYPVVVKPDNGNQGKGVSLELRCSEDVESAFDIARGFSDRVLLETFIPGKHYRIAVVADQVVAVSQRIQTHVVGNGYNTIRELIDIENSNPLRGEGHEKPLTKIKIDDVMMLILQKTSRTLEDVPKKEELIYLRENANLSTGGIAIDVTDEIHPDNVKVVRDAVRIIGLDIAGIDVTMPDISQSIRQVGGAVIEVNACPGIRMHHHPSEGQSRNVAASIVNMLFPAEKPFTIPIFSVTGTNGKTTTTRMLAKILRQNGLVVGMTSTGGIYVQDELICGGDATGPRSAESILLDNRVEVAVLETARGGLINKGLAYDLADIGIITNIGNDHLGMDGVNTLEEMADVKALVTEAIRPQGYAILNAEDKFVERIAQRITCQILYFAKDMNNKVIKDHVNRGEKAVYIKDDIIQVFDGEKEKPVIHVENIPATYGGVLIHNIENSLAAVAAAFGHGIKTDVIAKGLSQFQTDASTNPGRFNIFEMEKCRVVIDYGHNIDGYQKVLEGLKLMKKNRLIGVIGVPGDRTDISTLKIGEISGKHFDHVYIKEDKDLRGRNPGEVANLMKKGCALGGLKEEEIQIEHCEIKALQKALESAQQGDIIIVFYEKLEPLVKLIKDTQDAEKTMSLNPQLEIKIEEAVGKL
>NC_009633.1|WP_012062477.1|1276957_1277683_+|HAD-IB-family-hydrolase
MKNVGVFFDIDGTLYRDSLMVEHFKKLIKYEVIDPAIWHNVAKGTFHNWDKRQGNYEDYLLEIAEIYIGAMKGMRKEHIEFISNQVIHLKGDRVYRYTRGQIEWHKEQGHKIIFISGSPDYLVSRMAKKYGVTDYRGTKYFVDEDNRFTGEIEQMWDAESKQVAIAELVDEHNIDLQKSYAYGDTNGDFSMLKSVGHPIAINPAKELLLRIRKDEELRKILKIIIERKDVIYELNAETTIL
>NC_009633.1|WP_012062478.1|1277940_1278258_+|winged-helix-turn-helix-transcriptional-regulator
MSNQNYRLCASLLKSLAHPTRLEILEILKNQDGELCVCDIYEKLELEQSNVSQHLKVLKDQGILTSRKEGLMVFYKVSHLEIYVILEKVKLILQKQLQESLSHLL
>NC_009633.1|WP_012062479.1|1278278_1279262_+|permease
MFQRFGHLVAPYVVRFVNWVLQLLGLNIQTGDTFYNAVHFFIYDSIKIIFLLSFMIFVITYIRSYFPPEKVKALLAKFRGIWAYVVASVLGVVSPFCSCSTVPIFIGFVEGGIPLGVTFTFLVTSPIVNEIALGYLFVTFGPKIAILYTLAGMTIGIVTGLLIEKFNLHHLVEEYVYKMKMGEMEAEVMTRKQRLIYAKDSVVDIVKDIWIYVVIGIGIGALIHGWAPEDLLTKYAGPNNPLAVFVGVLFGIPLYANAVGTIPIAEALISKGVGVGTALAFMMSVVALSLPSIILLKKVIKPKLIAIFVGITGAGIVLVGFLFNWIL
>NC_009633.1|WP_041720422.1|1279343_1279577_+|thioredoxin-family-protein
MEIKILGSGCKNCTTLTKVVEEVLGELNMEATVEKVTDFQDILGYGVMKTPGLVVNGTVKFAGRIPSKDEVKKVLEG
>NC_009633.1|WP_012062481.1|1279778_1281653_-|IS1634-family-transposase
MEGLCMYISKSKRPSGKYFISIAKGIRDPETKKSKKIQIKGFGTHDLDSKSGKKALVQAEAELKEIIRLDEASRGFENFEDFIVSMSKDKLSLKHKNIGYLPYLEIFNQLKLQSFFSKMVKDSKLDYSFSDMMFYQVLGRLFNPSSKLEVATRKDDFLYDFNFVNNDNIYSSLDVFSGFNKHKSKALQDGIQVINDMEILLDTVDSEAKKILETNINNTSHELEELITSYDSNFEMNENKLFKHLNKHMEKIVPERNISLAFYDCTTYYFESFDEDGFRERGMSKDNKRNETQVVMGLLIDTNGIPISYRLFKGNKHELHTMEEVIDDILNNYTIKEIIIVADRGLNSRANLEMIRGKGLNYIVGSKGSAVPKDLKEKKFNSSWNITSKAEAKYKSGYITSKRKVSHNDETYDELIIKKYSDVYKEREMFKQDKMLERAKKNIKDFTINSTTKSKSKYYKAVDNPKEKINIEIDEEKIKQEQENFGYFYIVTNKVEMNPADIMVAYKSLYKIEESFRILKTNLKARPVYHFKERRIRSHFLICYLALVIQRVLEYKLEEKNVEISTHEIINGLEGFVIDEIDYKVDKLYMISDKLFKSKINQDIFKIEKNVLLSNEISNIIKKM

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Crispr_ID: NC_009633_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_6

1327026-1327135

Orphan

Consensus_repeat	Method
TTTAAGCACTTGAGATTTAAAACAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_6

>merge|NC_009633|6|1327026-1327135|CRISPRCasFinder
TTTAAGCACTTGAGATTTAAAACAACGCCTGTTTTAAATATAAGTGCGCTATGAGTCGGTGCGATAGCATCAGACGAATTTATTTAAGCACTTGAGATTTAAAACAACGC

>NC_009633|6|6|1327026-1327135|CRISPRCasFinder
TTTAAGCACTTGAGATTTAAAACAACGC	CTGTTTTAAATATAAGTGCGCTATGAGTCGGTGCGATAGCATCAGACGAATTTA
TTTAAGCACTTGAGATTTAAAACAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_012062513.1\|1313391_1314399_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NC_009633.1\|WP_012062524.1\|1328597_1330013_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_009633.1\|WP_012062525.1\|1330230_1330740_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|224766
NC_009633.1\|WP_012062519.1\|1321396_1322140_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NC_009633.1\|WP_041720434.1\|1334460_1334652_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_083760863.1\|1325364_1326942_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_009633.1\|WP_083760865.1\|1331557_1332250_+\|accessory-gene-regulator-B-family-protein	unknown	unknown	gnl\|CDD\|377395
NC_009633.1\|WP_012062530.1\|1334688_1335846_-\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NC_009633.1\|WP_012062514.1\|1314577_1316062_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376692
NC_009633.1\|WP_083760858.1\|1320394_1320853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378938
NC_009633.1\|WP_083760861.1\|1323120_1325091_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225971
NC_009633.1\|WP_012062518.1\|1320885_1321284_+\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|377605
NC_009633.1\|WP_012062515.1\|1316191_1317910_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|376416
NC_009633.1\|WP_157047171.1\|1327187_1328015_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NC_009633.1\|WP_012062529.1\|1333356_1334454_-\|endospore-germination-permease	unknown	unknown	gnl\|CDD\|281794
NC_009633.1\|WP_041720432.1\|1332249_1332384_+\|cyclic-lactone-autoinducer-peptide	unknown	unknown	gnl\|CDD\|275064
NC_009633.1\|WP_012062526.1\|1331112_1331583_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012062528.1\|1332534_1333233_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NC_009633.1\|WP_083760859.1\|1322255_1322966_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378149
NC_009633.1\|WP_012062516.1\|1318292_1320242_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_012062513.1\|1313391_1314399_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.45776e-85
NC_009633.1\|WP_012062524.1\|1328597_1330013_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.15561e-53
NC_009633.1\|WP_012062525.1\|1330230_1330740_-\|flavin-reductase	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	6.32268e-10
NC_009633.1\|WP_012062519.1\|1321396_1322140_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	3.27975e-13
NC_009633.1\|WP_083760863.1\|1325364_1326942_+\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.71047e-50
NC_009633.1\|WP_083760865.1\|1331557_1332250_+\|accessory-gene-regulator-B-family-protein	gnl\|CDD\|377395	pfam04647, AgrB, Accessory gene regulator B. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein.	3.4659e-26
NC_009633.1\|WP_012062530.1\|1334688_1335846_-\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	6.53121e-84
NC_009633.1\|WP_012062514.1\|1314577_1316062_+\|hypothetical-protein	gnl\|CDD\|376692	pfam01970, TctA, Tripartite tricarboxylate transporter TctA family. This family, formerly known as DUF112, is a family of bacterial and archaeal tripartite tricarboxylate transporters of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. TctA is part of the tripartite TctABC system which, as characterized in S. typhimurium, is a secondary carrier that depends for activity on the extracytoplasmic tricarboxylate-binding receptor TctC as well as two integral membrane proteins, TctA and TctB. complete three-component systems are found only in bacteria. TctA is a large transmembrane protein with up to 12 predicted membrane spanning regions in bacteria and up to 11 such in archaea, with the N-terminal within the cytoplasm. TctA is thought to be a permease, and in most other bacteria functions without TctB and TctC molecules.	1.30982e-142
NC_009633.1\|WP_083760858.1\|1320394_1320853_+\|hypothetical-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	2.77194e-12
NC_009633.1\|WP_083760861.1\|1323120_1325091_+\|HD-domain-containing-protein	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	4.29621e-65
NC_009633.1\|WP_012062518.1\|1320885_1321284_+\|DUF948-domain-containing-protein	gnl\|CDD\|377605	pfam06103, DUF948, Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.	6.18222e-05
NC_009633.1\|WP_012062515.1\|1316191_1317910_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|376416	pfam00920, ILVD_EDD, Dehydratase family.	0
NC_009633.1\|WP_157047171.1\|1327187_1328015_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.95183e-64
NC_009633.1\|WP_012062529.1\|1333356_1334454_-\|endospore-germination-permease	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	1.42397e-38
NC_009633.1\|WP_041720432.1\|1332249_1332384_+\|cyclic-lactone-autoinducer-peptide	gnl\|CDD\|275064	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide. Members of this family of short peptides are precursors to thiolactone (unless Cys is replaced by Ser) cyclic autoinducer peptides, used in quorum-sensing systems in Gram-positive bacteria. The best characterized is the AgrD precursor, processed by the AgrB protein. Nearby proteins regularly encountered include a histidine kinase and a response regulator. This model is related to pfam05931 but is newer and currently broader in scope.	2.27544e-06
NC_009633.1\|WP_012062528.1\|1332534_1333233_-\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	4.99315e-65
NC_009633.1\|WP_083760859.1\|1322255_1322966_+\|VTT-domain-containing-protein	gnl\|CDD\|378149	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain. The VTT domain was previously called the SNARE-associated domain, but was renamed as there seems to be no evidence for association with SNARE proteins.	2.03688e-27
NC_009633.1\|WP_012062516.1\|1318292_1320242_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.83935e-43

>NC_009633.1|WP_083760863.1|1325364_1326942_+|PAS-domain-containing-protein
MPVLIREVFMNGIGNKVCKSDKKARNNTNKKLKFIRHFSNDKKVALKITSIYVLISFLYVFLSDKVIRLLIKDLKTITRYLTIKGSFFIIFTASLMYFLIYKNIKRVRTLQEEVLSYGDRYKLVLNNTTDGFWDYNLLTNEVVLPLKWKNSLGYEDDEIPNTVDAWKNFIHPEDFNWVTQTLYDYINGKIPRYNIEYRMIKRDGGIIWIQDKGQAIWGADGKAIQICGTHTDITFRKESEEIKSKIMDEKQQLLVRALEQEKLQAEFFSNISHEFKTPLNVILGTVQLVEHYNRSNLSELEPRQLNKCIHIMKQNCYRLLRLINNLIDITKLDFDSFSIKYKNYNVIHILEEITQSTVALAEIKGISITFDTDVEEKIIACDINILERIMLNLISNAIKYSEVGSDINVMVCGQEESLLISVKDTGMGIPENQLSAIFDRFVQIDDSLPKKTEGSGIGLSLVKEFVEKLNGEISVKSKVDYGSEFVIKLPVEVLVEESIELNSHDYGKNLIEKINIELSDIYFSQ
>NC_009633.1|WP_083760861.1|1323120_1325091_+|HD-domain-containing-protein
MMKNIKRVTLTAISIVVSIIVVTIFVHIYYVDNTTAQTERLFQIQGAIGDKYIQMNLPIAVLNNIANQRESLAEMEIARQKNLLEAQERNVHLIRDNINEMKVLAAQGRGILNDLEKSKVLRFLILENELKLGLEQLMLRFDEYEVRFSEYSSLDTEELSSFIIATEELYQDTSSIIAGLESGSRELERRFRRGYISFVNTALALLFIFILILVALIIRILKIDANYVFESLKKLNDHCYTEDGLPKLTPYFEEEKKLKQFVENRYAEQAVLEEIKEIASKEYILDDVLEKTFWKIKDFLDVDRIGVAFVDYGRKRIIAETGKINYGDIHLGPGFEVAFHETSLTKMLLTKKAVALQNLSEELNKRPHSPSLRLMVKEGIRSNMIIPLISGDTVFGFLFFSSFHLNAYDEKDLILAVKIAREMSTIIDKTYLTKSMLHNITLTFADLVEKKDLETGNHINRMTSYCRIIAEGLQTNGDQDYCTYPKFIHELEMYAPLHDIGKIGVPDCVLTKPGKLTEDEWTVMKQHTSIGAEILTKLEDSLRIFKKDFFKVAIDVSHYHHEKWDGSGYPKGLKGKEIPLAARIAAIADVFDALSSKRPYKRAFSFQESLEIIEEGAGKHFDPILVEAFMTCLPQIKEVYENKRDFEEELMVHSGN
>NC_009633.1|WP_083760859.1|1322255_1322966_+|VTT-domain-containing-protein
MKWGDVVKKRHLNKKHILLIAVMVISIFIWVLYKYEIWNFISIDYLRKFTDKIQALGWLGLLLYLLSFAIGTMLFLPSVPFALLGGITYGTVQGITYAVAGDLLGASMAFIIARYIGRERIEKRLRKSKAFHEIDEGVKQDGWRIVVLTRMVPVIPHWLQNYAYGLTSISFTTYAFVSLLCIIPGTAVWIFAVNTVGRGQEDAKRTMIYLGIASVLIIAVSYLPKWIYKKKRQGSK
>NC_009633.1|WP_012062519.1|1321396_1322140_-|MBL-fold-metallo-hydrolase
MLLSKGQCRFHYLYNSGFIIETENNVIIIDYYQESPLITKELFTHKNIFVFVTHNHGDHFNPLIYDLSQEHDIQYIIHKDVPSASGSKILSVVPDQHYSVGDLSIETFGSTDSGVSYLISVDGLTVFHSGDLNWWKWKGKSQEIHKQEEADYKREIYKLRNKKIDIAFVPVDPRLEEYYDLAVKYFGSTIDVQTIVPMHFRDSLEPIQQLAHHWKDNGFSSQFVAITRRNQSFYFDEERALDFNKGQ
>NC_009633.1|WP_012062518.1|1320885_1321284_+|DUF948-domain-containing-protein
MQVTIDLGVIITVIFSLLGVGLLIVLLMAVLRLNETLKGVRNTLEKNEKHIDEALERLPRVLHNVEQITYTANEEMKQVSEVIRHVEETTGHTASTAQVINEDIVLPIKEVLELLAVLRGVFFKEKKKGFLR
>NC_009633.1|WP_083760858.1|1320394_1320853_+|hypothetical-protein
MGMNVKDLQSRVDKVRDLLDPNRIERQKKKARQEGVVKGIAFGAIIGSITGIFFAPDKGENTRKKTKEELEKAKDKLEVNLEIAKDKFEVNFEEGKEKFSEVVDTKKEVVLSKVEALKEKMGYDNSPNVINEEELESIEEEGTEEETEKIEG
>NC_009633.1|WP_012062516.1|1318292_1320242_+|glutamine-synthetase
MNQTIEELLSKEVLYTLPVWTHEKETLIKLLKAYPFIQFASLVAVDLGGNDTDEKIPISLFIDEMDEFLTNGVQTDGSSVVLHGIATLNNAKVDMVPDLFVNWFIDYNYDHIHEETGLPIGTLRIPAFLVHDDKRVDSRSVLNRTEEYFDAKIKSLFKKYPSLVQEFNIDSAEEIEEVKLTSATELEFWVKTPEDPADEEKLSTSQMLKEQYWKRTKGNVRTALEESLMILEKYGFEPEMGHKEVGGVTATIGVSGKLNHVMEQLEIDWKYSTALQCADNELFIRELVEETFERYGLEVTFMAKPIEGVAGSGKHVHISVTLKLKNGKYVNLFSPQDMKKDYISAPGWGALMGLLRNYEVINPFVTATNDAFNRLKPGFEAPVCIVGSVGHTTEVPSRNRTVLVGLVRDTNNPLATRFELRAPNPTTNTYLTLGAIYQTMMDGMTSSAATGMTSKELEKEFSKDAGEEKFYLDKERAYRSEEDVFEDYTEEERTRLFSAPPATVWENLKGFTNYPERKAILLEGDVFSEAIVDAYRLATLSQWVTELMGRIIPNNMDVVRNSRKRHQVENATDLDVVNWEKINSLRNYLMKDSMETKSLFTRIREAVEVENYDNVSELQIEMAEKSAHLKQLYYAYRRNLLEELNDTSI
>NC_009633.1|WP_012062515.1|1316191_1317910_+|dihydroxy-acid-dehydratase
MLRSQEVRNKAPEMDSLKMGMGWKVEELSKPQIIIESTFGHSHPGSAHLDVLVEEAYQGVIAKGGKPAKFFATDICDGQAQGHDGMDYSLASREFIASMIEIQIGATGYDAGVFIASCDKGMPAHLQAIARMDIPSVVLTGGSMKAGPNMLTLEQIGTYSAKYERKEITEAEFTHFKHNACPSCGACSFMGTAATMQVMAEALGLALPGTAFMPATAEELKVLAKKVGEHAMKLVELDLRPSQILTRKAFENAIMVHAAIAGSSNSLLHIPTIAHELGIEILPELFDEIHRKVPYILNIRPSGFYPGEYFWYAGGVPGVMEEIKDFLHLDVLTVTGKTLGENLEELKRSDYYDVCYKHLEEKGIKKEDILKTVKDPIQEQGAIGILKGNLAPEGAVVKHAAIAKEMLQATLRARPFDSEEEALKAILTKEIKPGDGVFIRYEGPKGTGMPEMFYTTEAIASDPELISTTALITDGRFSGATRGPAIGHVSPEASEGGPIALVEEGDLIKLDIPNRSLDIIGVKGQEKSVEEMERILVQRKTKWVKPKPKYTKGALGIYTKLAVSPMKGGYME
>NC_009633.1|WP_012062514.1|1314577_1316062_+|hypothetical-protein
MDSFQIFMSILSPSVLFVIFSGVMIGIIVGAIPGLNGAIGISLLLPITFTLEPQIGLLLLGGIYMGGMYGGSITAILLNVPGDVVAAPAAMEGYPLTQQGRSKEALYYSIFSSMFGGFIGVLILIFFTPPLASFALKFGPAEMFFISLSGLVVVGALAGSIYKSLFAVLFGLFISTVGVDMITASQRFTMGNINLRSGISVVPVVLGLFCLAEMFLNIGKKATEVVEYKDQDINKMTVIKDIVRQKSLVIKSSLIGTFVGLLPGVGTTLAVFLSYGEAKRVSKNPELFEKGNVEGIIAAEAANNATVGSSLVPLLALGVPGSPTSAIIAGALIIHGVILGPSLFVQRPDIAYTFIFGMLLTVVAMTLIGAFGIKYFSYILKIKMEYIVPTVLVFTIFGAYSLRNNVFDVLIAIILGVIGAIFKKTGVPLAPIIIGVVLGGLIETNLMRSMTIANARQVSLVRYMLTNPLAIVLLVMVCAIFYVVIKMRATTKTQ
>NC_009633.1|WP_012062513.1|1313391_1314399_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKRKIGILLVGLVFMLAAFVGCTSETNQEATGETNGEVAAGVEYPTKNIQIIVPYSAGGGGDTVARILSDALSQELGRQINVVNREGAGGEIGIAEMARSNPDGYTLGVFGYPDNFVLEHTRDTDFTFESFEYLAAFDDMPMGIFAGPDSPFQSTDDLVEFGTANPGALTIGESGALGLLHVLAFSDHLGIETAPVTFSGGGELMNSLLGKHVDLVSTSSMSHDPITDAGGHPIGFAAAERMAMFPEVPTFKESGYDLEMGVSRVIVAPAGLPEEIKEVLTAALDKIGNDPELKARFETAALPYRYLGSEDVSEFLTRSNNTLKPVIERNIERFK
>NC_009633.1|WP_157047171.1|1327187_1328015_-|ABC-transporter-permease-subunit
MSMLSKDLEDQTYSPSHLTYLSSVKRYQRNIKLSQVALLVGFILLWELVVTLRWIDPFFTSKPSAIFALITRLVQDGSIFKHTAVSVTEAVIAFVIGTLLGTVLATALWWSEFVARVLDPYLVVLHALPKIALGPIIIIWAGAGMRGIIVTALMISLVVTILSTYNGYKEVDEEKVKMLQTFGATKLQIFQKVIFPASIPTMINTMKINIGMTWVGVIVGEFLVSKAGLGYLIVYGGQVFRLDIVMAGVIILAIATAIMYQLIVWLEYRFLKGRQ
>NC_009633.1|WP_012062524.1|1328597_1330013_+|HAMP-domain-containing-histidine-kinase
MYNLEKMRRKKIYEIISTVKILSILCCCMVIFSIYDDGKEIGIVSKVYELDLIILGLIGIIILILVYPIWVLLSKETEDRSIVGFKGNLEMGGFFLLLAILTLLSGGHTSNYKFLFLFIIIISTLQYGKKYGVNIALLSSLFILVVDLLSMSSLESNTYFQIDIVLSAVFLLTAWLLGDYVHIEKDYAQKMILYFNEREVAEKELVATLELDKIKNEFFGNISHELKTPVNVIFGTVQLLDVQAKEGNVCNDKYLKIMKQNCYRLIRLVNNLVDTTKLDSGFYDLNLQNVNVVNVVESITLSVAQYVEGKGLTLEFDTDVEEKVLACDSEKIERIMLNLLSNAVKFTDIGGKIIVNMTDKGSHIIISVKDTGIGISPKDLKVIFQRFKQVDKSLTRNSEGSGIGLSLVKSLVEMHGGRVYTESQLGKGSNFIIELPVKMVDTEENNYKGIFERGESSEIERIKVEFSDIYL
>NC_009633.1|WP_012062525.1|1330230_1330740_-|flavin-reductase
MKSFHEIMPQQLDKSPFRIVGNDWMLITAEKDGQVNTMTASWGGFGVMWNKNVAFIVIRPQRYTKGFVDAADTFSLTFFDKDFKEQLSYLGTVSGRDEDKISKLNLSIEYSGETPYFTNANLVIICKKLYAQKYESQCFIDSTVDAESYPEKDYHTMYIAEVSKILIKK
>NC_009633.1|WP_012062526.1|1331112_1331583_+|hypothetical-protein
MLKLPIISLFLRTIPEGIILVLVGYMILNKPLEKQKICITGVILGISTYFVRMLPINFGIHMILILFVYMFLLHKINIMNFYKAVTAGIVSFIFIAISEWIMLVFYIGVLGMSTEKVLDQSLSSILLGLPSLVLLFCMGMLVQKIININARKSKVH
>NC_009633.1|WP_083760865.1|1331557_1332250_+|accessory-gene-regulator-B-family-protein
MLEKARYISMWNIQNASNYLAAKIALILKFDEDFEEVLAYGAFVILHTFWSIVFTLIFGFIFKVPMEAVIISFAASILRKNSGGVHASTPNRCIAIATTVFVIIALFINQLVSLSMVVSIVYCSSGFAFSYYIVYKKAPKDTPNKPITEEAMKNHLRSKAIKTIHIFLLLSIILLFMYSKGKHEYLLKIMLSLVSGVLWQSITLTNLGSLIVSNLDSLLEKIACLVGGEK
>NC_009633.1|WP_041720432.1|1332249_1332384_+|cyclic-lactone-autoinducer-peptide
MNKRVLMLLAGFATTVLTLAANTITTSACAWGVYQPKEPKLLRK
>NC_009633.1|WP_012062528.1|1332534_1333233_-|peptidylprolyl-isomerase
MKLISKSKALKVSCILLLVGALLSITACTNATPIDIDDNEDVENVELVGDAEEVENFEGQAKPLVTIEMETGGIIEIELYPEVAPNTVKNFVSLIENGHYDGLIFHRVIPGFMIQGGDPNGNGSGGPGYAIEGEFLSNQFENNLLHERGVISMARSQDPNSAGSQFFIMTEKASHLDGDYAGFGQVVTGMDVVDEIVHSKTGTQDKPVEDQKMQRVTVDTFDVNYEAPKIIQ
>NC_009633.1|WP_012062529.1|1333356_1334454_-|endospore-germination-permease
MTKQVQISPIQLTILLMGFLFGTTVFIVSGFHAEQNAWIAFLLSWSGGILLFACYVLLSKKFPQKTLVEINKILLGNFLGSALSILYIWYFIHLGALILRNFGEYVVIAHMTETPLWFPIFLLLIISLYATKSGLEVTSRTAELVVPLIFLFQLILTLSLITEVDLSLLRPILQEGFPPVLRAAFSTLTFPFGETVVFLMIIPYLNKPTQLKKTYLSAFLIVGLILFITLIRDITILGPRGIERKIFAPHLVAKHVAFVDFDAVIGIMFFISSWTKLSVCYLGTTIGISQLTNSNNHRLFVYPVGIILMGLSIWIYDSASEMLSWAIDIWPLYSVPFQILFPLLLLLISFFKKDRTQNKESTYSD
>NC_009633.1|WP_041720434.1|1334460_1334652_-|hypothetical-protein
MLILLLTLFDLPFLLQSKQKRTLITYYSLVTIGIITIYIILMDLPIDSPVVVIEDLINFITER
>NC_009633.1|WP_012062530.1|1334688_1335846_-|Ger(x)C-family-spore-germination-protein
MKKCTLLLIIISFGMIMTGCWNRIELDEISIAVAIGVDQLDNDLFEVSAQIVLPRLLRHDLAEENATLVYTATGRTVFEAMRRLGSIANGRIFIGHTQVLVLGESLTRAGIYDVIDFFERDHETRGETLVMTSKGISAQDVLQTKSIADPIPAIHITSIIENSVNVANTRILTLHDFIDELNCPGCELVLGTIGSGTSDKPELIKDLAIEGLIAFDGDQSIDYLNPTETRGYLWIKGEIEGGILVIPSPGDKNKLLSMEILHIISEMDVKLVDNKLVLVVNIQEEGNIGEQQVTKDLSTPEALSQLEEEKNKLIRSEIGAAFFKAQKELQVDLFRFGQLVHHKYPKLYKEIEADWNEAFSNASVEINVETKIRSTGLISAPSVPR

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Crispr_ID: NC_009633_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_7

1716733-1716841

Orphan

Consensus_repeat	Method
CGACTCATGGCGCACTTAAATTTAAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_7

>merge|NC_009633|7|1716733-1716841|CRISPRCasFinder
CGACTCATGGCGCACTTAAATTTAAAACGAGCGTTGTTTTAAATTTCAAGTGCTTAAGAATTCGTCTGATGCTGTCGCATCGACTCATAGCGCACTTAAATTTAAAACG

>NC_009633|7|7|1716733-1716841|CRISPRCasFinder
CGACTCATGGCGCACTTAAATTTAAAACG	AGCGTTGTTTTAAATTTCAAGTGCTTAAGAATTCGTCTGATGCTGTCGCAT
CGACTCATAGCGCACTTAAATTTAAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_083760910.1\|1726306_1726396_+\|YqzL-family-protein	unknown	unknown	gnl\|CDD\|379412
NC_009633.1\|WP_157047383.1\|1725387_1726203_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NC_009633.1\|WP_012062837.1\|1708593_1709757_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NC_009633.1\|WP_012062850.1\|1722735_1723095_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_009633.1\|WP_012062839.1\|1710910_1712326_+\|phospholipase	unknown	unknown	gnl\|CDD\|197227
NC_009633.1\|WP_041721498.1\|1718084_1719989_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NC_009633.1\|WP_083760908.1\|1721972_1722491_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_009633.1\|WP_012062851.1\|1723362_1724712_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
NC_009633.1\|WP_083760906.1\|1715743_1716709_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378056
NC_009633.1\|WP_012062841.1\|1712871_1713624_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009633.1\|WP_012062843.1\|1714327_1715206_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NC_009633.1\|WP_012062852.1\|1724725_1725370_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_009633.1\|WP_012062845.1\|1717035_1717638_+\|DUF445-family-protein	unknown	unknown	gnl\|CDD\|226834
NC_009633.1\|WP_012062840.1\|1712593_1712794_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	unknown	unknown	gnl\|CDD\|365990
NC_009633.1\|WP_012062836.1\|1707894_1708434_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NC_009633.1\|WP_012062838.1\|1709777_1710782_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_009633.1\|WP_157047382.1\|1720046_1721468_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_009633.1\|WP_012062849.1\|1722511_1722703_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_009633.1\|WP_012062842.1\|1713833_1714034_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_009633.1\|WP_012062835.1\|1707248_1707716_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_083760910.1\|1726306_1726396_+\|YqzL-family-protein	gnl\|CDD\|379412	pfam14006, YqzL, YqzL-like protein. The YqzL-like protein family includes the B. subtilis YqzL protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length.	1.1821e-05
NC_009633.1\|WP_157047383.1\|1725387_1726203_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	5.71538e-79
NC_009633.1\|WP_012062837.1\|1708593_1709757_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	1.73925e-157
NC_009633.1\|WP_012062850.1\|1722735_1723095_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	6.07256e-64
NC_009633.1\|WP_012062839.1\|1710910_1712326_+\|phospholipase	gnl\|CDD\|197227	cd09129, PLDc_unchar2_1, Putative catalytic domain, repeat 1, of uncharacterized phospholipase D-like proteins. Putative catalytic domain, repeat 1, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	5.69792e-113
NC_009633.1\|WP_041721498.1\|1718084_1719989_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_009633.1\|WP_083760908.1\|1721972_1722491_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.36599e-87
NC_009633.1\|WP_012062851.1\|1723362_1724712_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.47965e-103
NC_009633.1\|WP_083760906.1\|1715743_1716709_+\|hypothetical-protein	gnl\|CDD\|378056	pfam08812, YtxC, YtxC-like family. This family includes proteins similar to B. subtilis YtxC an uncharacterized protein.	4.69605e-72
NC_009633.1\|WP_012062841.1\|1712871_1713624_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00139e-19
NC_009633.1\|WP_012062843.1\|1714327_1715206_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	1.1349e-138
NC_009633.1\|WP_012062852.1\|1724725_1725370_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.18677e-65
NC_009633.1\|WP_012062845.1\|1717035_1717638_+\|DUF445-family-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	6.2402e-18
NC_009633.1\|WP_012062840.1\|1712593_1712794_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	2.2696e-05
NC_009633.1\|WP_012062836.1\|1707894_1708434_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	2.78509e-78
NC_009633.1\|WP_012062838.1\|1709777_1710782_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.80622e-14
NC_009633.1\|WP_157047382.1\|1720046_1721468_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_009633.1\|WP_012062849.1\|1722511_1722703_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	5.83504e-20
NC_009633.1\|WP_012062842.1\|1713833_1714034_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.39347e-33
NC_009633.1\|WP_012062835.1\|1707248_1707716_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	1.33289e-47

>NC_009633.1|WP_083760906.1|1715743_1716709_+|hypothetical-protein
MIIDKTYTTSTAERSDIYMNLLAISMRGSVEKLQSNLSKQIESFKGEGILINEKVTEEGHHHIIQYNVNIQSIKNYPISDFINIFKYCTANAISEYILGYEEPRFIGRIISEDYAYFEIKEKLELQKKAFDLLDDESNTLLLSEGEFRNRKTFILEKIVDYFNNNTQIDLMGFVTFRLKDYLMELNEVVERAAEDLLVNKEYSEFIKLLKYFVDIQEPKVDLVHVVLNRENSYELYDKNNNVIENEYLKDVATEIKDRNINYEDILISSLITIAPSEIFIHQVSNTKNHEMIKTIGGIFIDKVKTCEGCEWCTLKLEVKKE
>NC_009633.1|WP_012062843.1|1714327_1715206_+|Hsp33-family-molecular-chaperone-HslO
MSSRIIRATAANSSIRAFVANTTNLVEKARGFHQTSPVASAALGRTLTATSMMGVMLKGEKQKITTKINGGGPLGVILVVGDSEGNVKGYVGNPQVESTNIRPGKLDVGAAVGSDGEITVIKDLGMKKPYVGTAPLVSGEIGEDFATYFLNSEQQPSAVSLGVLIDIDYRIKASGGFIIQVLPNVQEAVLAKLESRIGQLESITVMMEQGMNEVDILNHVLEGMDPKIVETYEVDFECDCNVARFEKGLISIGRQEIREMIEEDENTELVCHFCNKKYHFNKEQLQGLLDEM
>NC_009633.1|WP_012062842.1|1713833_1714034_+|cold-shock-protein
MEKGTVKWFNSEKGYGFITRENGDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGDKGPQATNVERA
>NC_009633.1|WP_012062841.1|1712871_1713624_+|class-I-SAM-dependent-methyltransferase
MSEQYGEFAYLYDRLMEDVNYPQWIDYIEEIFKRENLTEKEVLELACGTGNITMPLAKRGYRITASDLSQDMLTVAHEKSLENHVDVVFVNQNMAEIEFHRQFPCILCLCDGINYVIEPEDLMDTYQGIYEHLQEGGLFIFDISSYYKLKYVLGEHTFGENLDDLVYLWENSFDEEDEIIEMNLTFFTQGKDKGQCYEKFEETHFQKAYQATHLVQMLKAVGFSQISTQEAFTFESVKEQTERIFFICKK
>NC_009633.1|WP_012062840.1|1712593_1712794_+|small,-acid-soluble-spore-protein,-alpha/beta-type
MSKELREKEFTPELMMKYEIAEELGLLEKVKSFGWGGLTAKETGRIGGLITVRKKKNQNRDQNKGE
>NC_009633.1|WP_012062839.1|1710910_1712326_+|phospholipase
MKRLRKRYFLYVIFSVAFLTSIFHLVKPLPEDISFNGAFHAVTDVEFLSDITYVMEDGNGIQEQAIFKRIHESIDAAEDYIVIDMFLFNDDYDRAYSYPELSMELSNALVQKRKEQPDVEIVFITDRINSVYGTYTIEQLEKMKAQGIEVIETDMRKLRDSNPLYSGFWRAYIQWFGTDGFDWLPNPFGTESPSVNVRSYLELLNFKANHRKVVLTEKEAIISSGNPHDASAFHSNIAFVLKGDIVGDFLTTEKTVASISGSNIEFEYIESDMKTNADINVKVITEGQIKKELLDSINSTENGDEIRMGMFYLSDRDIVTALKNAANSGVDIKLVLDPNKDAFGMEKSGIPNRQVASELTNNSPVEVRWYDTQGEQYHSKITLIKKEKESIIIGGSANLTKRNIGDLNLETNVMIVADNDKEISSEVYNYFETIWNNVEGVYTTDYVIYQDDSVMKKVLYRIQEWTGLSTF
>NC_009633.1|WP_012062838.1|1709777_1710782_+|CPBP-family-intramembrane-metalloprotease
MDNKLKVLDANILYIIGAFLFITLGSYFQGRSLLSGLIITQYILILLPPLIYLKGKAFSIKKTMRFNRISFKHGMLVTLITLLMYPTAIFANALMMTLMSFVGNLNIPALPTATSGGEYIVLMVIISVSAGICEEVFFRGFILSGYERLGQRKAIIISAVLFGLFHLNLYNLAGPIVLGLVFGYLVILTDSIYAGIIGHTVNNGFAVTLGFAINRLIERTPNVVDSEPEIISTTTALLFNVMFFGIIAIATGYVALRLVRIIKKDLNLGKEGISETLVVHKKEGLIKTEELMVDEQLTLKTEVTEWWEFAPLALFIPLFLFVAFHQLREIILLG
>NC_009633.1|WP_012062837.1|1708593_1709757_+|amidohydrolase
MKLESQIENLQVELNHIRRELHRIPELAFEEVETAQYIMRYLDDLGIFYEKGIAGTGVVAYIPGSLGKKTYCFRADMDALSVVEENEIDFRSMSEGRMHACGHDGHMTILLGVAKYLSLNKEKIKENVLLLFQPAEEGPGGALPVIESGILEKYNVDEIYGLHIFPGIEEGKIGLKSGPMMSQTGEFDVAVKGRSGHGAMPHTAIDSVVIASEMVLAMQSIVSRTINPIDPAVVTMGRIEGGERRNIIAKEVTLEGTIRAFSQENYDTIKERILEIKEGLSKAHRCEIEVIFRDMYPAVYNDEALTEALISAQEKGTVELIPPIMLAEDFAYYQREIPGVFFFLGSGNFDKGFIHPLHHGCFNFDEQILGYGVQCFVNILKQRGVTT
>NC_009633.1|WP_012062836.1|1707894_1708434_+|hypoxanthine-phosphoribosyltransferase
MDIEKKVWEVLCSEEDIENRLKELGEQLSIEYKGKKLYVISLLKGSFVFTADLVRQLTIPVKINFMTTSSYGHDEKSSGHVKIVTDVQEDLTGYDVLVADDITDSGLTMKEVMDHLKSKNPSSVKSCVLLDKPDRRKVDLEPDYVGFTIPDKFVVGYGLNFGDYYRNIPYVFVVTDQDR
>NC_009633.1|WP_012062835.1|1707248_1707716_-|GAF-domain-containing-protein
MDQQTKKELFLRLEKKAFALISKEEQLDNVYQGIVELLDNNIPYYNWTGFYMIENGELVLGHYLGAHTDHTHIQIGQGICGQAADRKETFIVDDVTKETNYLACSFETASEIVVPILKGDDVLGEIDIDSHEPSAFDSLDQHLLESICAKLAERL
>NC_009633.1|WP_012062845.1|1717035_1717638_+|DUF445-family-protein
MVFLTLAILAGIGALIGWVTNLLAVKLLFRPFEPVRIPIINVSIQGLIPKRRSEIARSIGKTVEEELLSVDEILYRLMETQDKKEILQILKIKIQAIVEERLPSLIPSAFRGMIGKYIEDVIEREGETMLAEVMASVVKKATENINIGQMVEEKVNDFELEGLESMVLTIAQKELKHIEILGGVLGFMIGLFQGIIILLL
>NC_009633.1|WP_041721498.1|1718084_1719989_+|threonine--tRNA-ligase
MVKVALKDGSVREVEKGTSILDVAKEISQGLARVAIGAELDGKKIDLFAPIEGDCQLSILRFEDEGGEEFLRHTSAHLLAQAVLRLFPNTKLAIGPAIDNGFYYDFDTEHRFIPEDLEKIEAEMQKIVKEDLHVERFELSRDKAIELVKEQGEDYKLELIQDLPEDAVISFYKQGEFTDLCAGPHVLSTGKIKAFKLLSIAGAYWRGDEKNKMLQRIYGTSFTKKADLEAHLERLEEAKKRDHRKIGKELDLFSLNEEGPGFPFFHPNGMIVRNELENFWRREHTKRGYEEIKTPIILNEQLWKQSGHWDHYQENMYFTNIDDANYAVKPMNCPGSILMYKRKMHSYRDLPIRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMLPEQIKDEILGVMNFVDYFYKVFGFKYHIELSTRPKDSMGTDEEWDLAINSLREALEENNVKYKLNEGDGAFYGPKIDFHLEDAIGRTWQCGTIQLDFQMPQRFDINYVGADGEKHRPIMIHRVIFGSIERFIGILIEHYAGKFPAWLAPVQAKILPITDNHLEYARKLQQQMLEKDIRVVIDERSEKIGFKIREARLERVPYMLVIGDKEVESETVAVRAREEGELGAVDASKFIGDLVKEIADKA
>NC_009633.1|WP_157047382.1|1720046_1721468_-|ATP-dependent-zinc-metalloprotease-FtsH
MKLDRPAQLAHATIKTEKKEKDTNTKETFTKPKTTFEDVAGLDEVKEELAEVIDFINQSEKYKKMGAKIPKGILFHGPPGTGKTLLASAVAGETKSTFFSASGSEFVEKYVGVGAKRIRTLFEKAKKEAPSVIFIDEVDAIGAKRHLDSNNEKDQTLNQLLVELDGFNTDQTVVVIAATNRMDLLDEALLRPGRFDRHMYISNPNVRAREEILKVHTKNKPLCPKIEIKNLARKTHGMSGAHLANISNEAAIIAVREDAEVISLDHFDQAIERVIAGLQVRNPTVLQKEKEIVAFHEAGHALVGKILGTDMVQKVSIIPRGQALGYVLQMPEDDRYIYTQQELYHKIMVMLGGRAAEQLIFNHLSTGAKDDLKKATELGMQMVCDYGMSDLGYVYNEANMIHAMSNDLNKEMNHIVKGCFEKTIHQLKTYEKQLNDIAKALLDRETLNGDELEELLGDFKQAPVKTKEELEAV
>NC_009633.1|WP_083760908.1|1721972_1722491_+|translation-initiation-factor-IF-3
MRDNQEAQINEEIRDKEVRLIDANGDQLGVVPGREALQIASEKNLDLVKISPQAKPPVCKIMDYGKFKYELAKKDKEAKKKQKVVTVKEVRLSPNIEAHDVEVKCKRALKFLESGDKVKVTLRFRGRELGNIEAGRKVINQFKDMLTEVSTVEKYPKMEGRQMIMVLAPKNA
>NC_009633.1|WP_012062849.1|1722511_1722703_+|50S-ribosomal-protein-L35
MPKMKTHRGAAKRFKKTKTGLLKRMKAYKSHILTKKSSKRKRNLRKATVVSKGDFKRIKQLLP
>NC_009633.1|WP_012062850.1|1722735_1723095_+|50S-ribosomal-protein-L20
MARVKKGVTARKRHKKVLKLAKGFRGARSKLFRPANQFVMKALRHAYVGRKLRKRDFRRLWITRINAATRINGLSYSKFISGLKLSGIEMNRKVLSEMAIHDKEGFAQLVETAKQKLNA
>NC_009633.1|WP_012062851.1|1723362_1724712_+|TrkH-family-potassium-uptake-protein
MKDKIGHPKIDPTQVLVMGFASVIMIGALLLNLPIAAQDGRSIGFLNALFTSTSAVCVTGLVVVDTGTYWTIFGKTIILILIQIGGLGFMTMATMFAILLGKKISLKERLIIQESLNQNTLTGLVRFTKYIILGTFAIEAIGAFFLAFRFVPELGWAKGIAYSIFHSISAFCNAGFDIIGNGVGLTPYVNDPIVNVTLWAMVILGGIGFSVMVDVVNQRKFKKFTLHTKMVLIITGALLGLGFVGFLILEWNNPETLGSLNFGGKLMAAFFQSMTTRTAGFNTIASDQMTNASKFLSILWMYIGGSPASTAGGIKTATLGVLVFTVISVVKGREETELYGRRIPRTIVNRALTVASIGLVLIVFVTMILSITETGFSFMDILFETTSAFGTVGLSLGVTPELSVIGRIVIIFMMFAGRVGPLTIAYALATQQRKNKGMIRYPEEKIIVG
>NC_009633.1|WP_012062852.1|1724725_1725370_+|TrkA-family-potassium-uptake-protein
MKQYIVIGCGRFGSSVAKTLYKMGHDVLAIDGNEEIVQHISDEVTHAVQADATDEHALRTLGIRNFDVAVITIGSNIQASIMATLIVKDLGVKYVVAKAQNDMHAKVLYKIGADRVVFPERDMGTRVAHNLVSTNILDYIELAPDYSIMEISALEAWSGKTLLEINVRAKYGVNIMAIKQGDLINVSPNAKDRISRGDVLVVIGHNNDLKKIQE
>NC_009633.1|WP_157047383.1|1725387_1726203_+|RNA-methyltransferase
MEQQIITSDKNAVLKHIKGLSLRKNRIKHQQFTIEGLRIVEECFLHGGPIDHILYCDHIHQVQGGPHLLEKLKEKYPCHQTMDSLFLKIADTETPQGIIAVVEMKNHQLESLDLEKKENPFIVVLDEIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSNNNEEWIYYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVDERVKIPILGKIESLNASVAAGILIYQGIQGRFLKD
>NC_009633.1|WP_083760910.1|1726306_1726396_+|YqzL-family-protein
MKTAELFWKIFEMTGSVTAYLMYKELVMN

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Crispr_ID: NC_009633_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_8

1762705-1763869

TypeI

NA:I-C

Consensus_repeat	Method
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCTATATGGGGGCGNTGGATTGAAAT	CRT

17 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_009633_8

>merge|NC_009633|8|1762705-1763869|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTATATGGGGGCGTGGATTGAAATCGTTATTATCTTTTAGTCCTGCGAATTGCATTGGTAGTCGCTCCCTATATGGGGGCGTGGATTGAAATATTTTGCATTGATATTTCAACCCTGTTATTTTTCCAGTCGCTCCCTATATGGGGGCGTGGATTGAAATCCCATACAACTACATTGAAAAAATCCGCTTTTTTAGTCGCTCCCTATATGGGGGCGTGGATTGAAATGCTCATAGCTCTTAGCTTTGAATAAGATTTACAGTCGCTCCCTATATGGGGGCGTGGATTGAAATTAAAAGGGAGATGATTGAATGAAGTATATAGACCCGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTCTGGTATTTCCTTACCTTTTAATATCGCTGTAGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTATAGCTTCAGGTGTTTCTCCGGTGTTGTACATGGTCGCTCCCTATATGGGGGCGTGGATTGAAATAATGCTCCAGTTTTTAGCTTTCATTTCTCTTATAAGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTCCATGTGGATTGACCTTTATCGTATTCATCCAGGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTGTGTCATGTCCTCAACCCATTGTGTCCCTGTCGTCGCTCCCTATATGGGGGCGTGGATTGAAATCAATACACCAAATTCATTTAGTCTGTATTGCGTGGGTCGCTCCCTATATGGGGGCGTGGATTGAAATTGCCCTGGTGGCTGGTGTTAACTCTTTAAATTTAGTCGCTCCCTATATGGGGGCGTGGATTGAAATCTTGATAGTGTGTACAAAACACTCATATTCATTGTGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTGTTCACTTAGTCCGTTCCATTGTTTTTTAGTTGTCGCTCCCTATATGGGGGCGTGGATTGAAATTTATCTTTTATTAACATGTTATAATCTGATAGAGAGTCGCTCCCTATATGGGGGCGTGGATTGAAATCTCCCCTCAATCTCCTACCATTTATTTCTGAATTGTCGCTCCCTATATGGGGGCGTGGATTGAAATGGATTCGGCAACAACAATCGAAGTAACAATGGGGTCGCTCCCTATATGGGGGGCGTGGATTGAAAT

>NC_009633|8|1|1762705-1763869|PILER-CR
GTCGCTCCCTATATGGGGGCGTGGATTGAAATC	GTTATTATCTTTTAGTCCTGCGAATTGCATTGGTAG
TCGCTCCCTATATGGGGGCGTGGATTGAAATAT	TTTGCATTGATATTTCAACCCTGTTATTTTTCCAGT
CGCTCCCTATATGGGGGCGTGGATTGAAATCCC	ATACAACTACATTGAAAAAATCCGCTTTTTTAGTC
GCTCCCTATATGGGGGCGTGGATTGAAATGCTC	ATAGCTCTTAGCTTTGAATAAGATTTACAGTCG
CTCCCTATATGGGGGCGTGGATTGAAATTAAAA	GGGAGATGATTGAATGAAGTATATAGACCCGTCGC
TCCCTATATGGGGGCGTGGATTGAAATTTCTGG	TATTTCCTTACCTTTTAATATCGCTGTAGTCGCT
CCCTATATGGGGGCGTGGATTGAAATTTATAGC	TTCAGGTGTTTCTCCGGTGTTGTACATGGTCGCTC
CCTATATGGGGGCGTGGATTGAAATAATGCTCC	AGTTTTTAGCTTTCATTTCTCTTATAAGTCGCTCC
CTATATGGGGGCGTGGATTGAAATTTCCATGTG	GATTGACCTTTATCGTATTCATCCAGGTCGCTCCC
TATATGGGGGCGTGGATTGAAATTTGTGTCATG	TCCTCAACCCATTGTGTCCCTGTCGTCGCTCCCT
ATATGGGGGCGTGGATTGAAATCAATACACCAA	ATTCATTTAGTCTGTATTGCGTGGGTCGCTCCCTA
TATGGGGGCGTGGATTGAAATTGCCCTGGTGGC	TGGTGTTAACTCTTTAAATTTAGTCGCTCCCTAT
ATGGGGGCGTGGATTGAAATCTTGATAGTGTGT	ACAAAACACTCATATTCATTGTGTCGCTCCCTATA
TGGGGGCGTGGATTGAAATTTGTTCACTTAGTC	CGTTCCATTGTTTTTTAGTTGTCGCTCCCTATAT
GGGGGCGTGGATTGAAATTTATCTTTTATTAAC	ATGTTATAATCTGATAGAGAGTCGCTCCCTATATG
GGGGCGTGGATTGAAATCTCCCCTCAATCTCCT	ACCATTTATTTCTGAATTGTCGCTCCCTATATGG
GGGCGTGGATTGAAATGGATTCGGCAACAACAA	TCGAAGTAACAATGGGGTCGCTCCCTATATGGG
GGGCGTGGATTGAAAT

>NC_009633|8|8|1762705-1763868|CRISPRCasFinder
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CGTTATTATCTTTTAGTCCTGCGAATTGCATTGGTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	ATTTTGCATTGATATTTCAACCCTGTTATTTTTCCA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CCCATACAACTACATTGAAAAAATCCGCTTTTTTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	GCTCATAGCTCTTAGCTTTGAATAAGATTTACA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TAAAAGGGAGATGATTGAATGAAGTATATAGACCC
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTCTGGTATTTCCTTACCTTTTAATATCGCTGTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTATAGCTTCAGGTGTTTCTCCGGTGTTGTACATG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	AATGCTCCAGTTTTTAGCTTTCATTTCTCTTATAA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTCCATGTGGATTGACCTTTATCGTATTCATCCAG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTGTGTCATGTCCTCAACCCATTGTGTCCCTGTC
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CAATACACCAAATTCATTTAGTCTGTATTGCGTGG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TGCCCTGGTGGCTGGTGTTAACTCTTTAAATTTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CTTGATAGTGTGTACAAAACACTCATATTCATTGT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTGTTCACTTAGTCCGTTCCATTGTTTTTTAGTT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTATCTTTTATTAACATGTTATAATCTGATAGAGA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CTCCCCTCAATCTCCTACCATTTATTTCTGAATT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	GGATTCGGCAACAACAATCGAAGTAACAATGGG
GTCGCTCCCTATATGGGGGGCGTGGATTGAAA

>NC_009633|8|1|1762705-1763868|CRT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CGTTATTATCTTTTAGTCCTGCGAATTGCATTGGTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	ATTTTGCATTGATATTTCAACCCTGTTATTTTTCCA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CCCATACAACTACATTGAAAAAATCCGCTTTTTTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	GCTCATAGCTCTTAGCTTTGAATAAGATTTACA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TAAAAGGGAGATGATTGAATGAAGTATATAGACCC
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTCTGGTATTTCCTTACCTTTTAATATCGCTGTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTATAGCTTCAGGTGTTTCTCCGGTGTTGTACATG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	AATGCTCCAGTTTTTAGCTTTCATTTCTCTTATAA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTCCATGTGGATTGACCTTTATCGTATTCATCCAG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTGTGTCATGTCCTCAACCCATTGTGTCCCTGTC
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CAATACACCAAATTCATTTAGTCTGTATTGCGTGG
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TGCCCTGGTGGCTGGTGTTAACTCTTTAAATTTA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CTTGATAGTGTGTACAAAACACTCATATTCATTGT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTGTTCACTTAGTCCGTTCCATTGTTTTTTAGTT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	TTATCTTTTATTAACATGTTATAATCTGATAGAGA
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	CTCCCCTCAATCTCCTACCATTTATTTCTGAATT
GTCGCTCCCTATATGGGGGCGTGGATTGAAAT	GGATTCGGCAACAACAATCGAAGTAACAATGGG
GTCGCTCCCTATATGGGGGGCGTGGATTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_012062883.1\|1762245_1762536_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009633.1\|WP_012062874.1\|1750763_1751501_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NC_009633.1\|WP_012062891.1\|1774789_1778320_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_009633.1\|WP_012062886.1\|1766302_1771198_-\|cytidyltransferase	unknown	unknown	gnl\|CDD\|185680
NC_009633.1\|WP_041720527.1\|1773832_1774564_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_009633.1\|WP_012062876.1\|1752159_1753947_-\|indolepyruvate-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|274526
NC_009633.1\|WP_012062893.1\|1780204_1782565_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NC_009633.1\|WP_012062877.1\|1754575_1756972_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_009633.1\|WP_012062879.1\|1757722_1759678_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_009633.1\|WP_012062885.1\|1765039_1766284_-\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|223117
NC_009633.1\|WP_012062875.1\|1751573_1752146_-\|indolepyruvate-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|180732
NC_009633.1\|WP_012062892.1\|1778720_1780196_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NC_009633.1\|WP_012062887.1\|1771687_1772071_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_009633.1\|WP_012062880.1\|1759693_1760554_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_009633.1\|WP_012062884.1\|1763999_1765043_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_009633.1\|WP_012062888.1\|1772262_1773090_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270338
NC_009633.1\|WP_012062882.1\|1761205_1762237_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_009633.1\|WP_041720524.1\|1760543_1761209_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009633.1\|WP_012062878.1\|1756986_1757739_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_009633.1\|WP_012062889.1\|1773186_1773840_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_012062883.1\|1762245_1762536_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.57049e-29
NC_009633.1\|WP_012062874.1\|1750763_1751501_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	5.98384e-57
NC_009633.1\|WP_012062891.1\|1774789_1778320_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_009633.1\|WP_012062886.1\|1766302_1771198_-\|cytidyltransferase	gnl\|CDD\|185680	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.	3.57209e-07
NC_009633.1\|WP_041720527.1\|1773832_1774564_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.29519e-160
NC_009633.1\|WP_012062876.1\|1752159_1753947_-\|indolepyruvate-ferredoxin-oxidoreductase	gnl\|CDD\|274526	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.	0
NC_009633.1\|WP_012062893.1\|1780204_1782565_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NC_009633.1\|WP_012062877.1\|1754575_1756972_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.61083e-56
NC_009633.1\|WP_012062879.1\|1757722_1759678_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_009633.1\|WP_012062885.1\|1765039_1766284_-\|lactate-dehydrogenase	gnl\|CDD\|223117	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion].	4.04111e-12
NC_009633.1\|WP_012062875.1\|1751573_1752146_-\|indolepyruvate-oxidoreductase-subunit-beta	gnl\|CDD\|180732	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed.	1.08288e-69
NC_009633.1\|WP_012062892.1\|1778720_1780196_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_009633.1\|WP_012062887.1\|1771687_1772071_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.62006e-11
NC_009633.1\|WP_012062880.1\|1759693_1760554_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.52254e-118
NC_009633.1\|WP_012062884.1\|1763999_1765043_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.04153e-19
NC_009633.1\|WP_012062888.1\|1772262_1773090_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270338	cd13620, PBP2_GltS, Substrate binding domain of glutamate or arginine ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. This family comprises of the periplasmic-binding protein component (GltS) of an ABC transporter specific for glutamate or arginine from Lactococcus lactis, as well as its closely related proteins. The GltS domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.88081e-90
NC_009633.1\|WP_012062882.1\|1761205_1762237_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_009633.1\|WP_041720524.1\|1760543_1761209_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.58966e-30
NC_009633.1\|WP_012062878.1\|1756986_1757739_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.39064e-101
NC_009633.1\|WP_012062889.1\|1773186_1773840_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.29158e-84

>NC_009633.1|WP_012062883.1|1762245_1762536_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDINTQTPLGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKCREVQHTLEKIIDKDKDSLRFYYLGNNYKGKVVHIGAKESFDVEDTLII
>NC_009633.1|WP_012062882.1|1761205_1762237_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSPNTYLSLDGENIVILKDQVEISRIPLHNLEGIVAFGYTGASPALMGACAKRNIALSFMKPSGKFLARVVGEVRGNVTLRKAQYRLSDNTEESNIISRNFILGKIYNTRWVIERATRDYAMRLDVDKLKKVSKVLANSLKLVEQSENLEQLRGYEGEAASQYFSVFDDLILQQKEFFYFRYRNKRPPLDNVNAMLSFVYTLLAHDFAAALETVGLDPYVGFLHRDRPGRISLALDMMEELRSVYADRFVISLINKKEVNSDGFTQKENGAVTMDDDTRKTILKAWQSKKQETITHPFLQEKVEWGLVPYAQAMLLARFIRGDLDGYPTFMWK
>NC_009633.1|WP_041720524.1|1760543_1761209_+|CRISPR-associated-protein-Cas4
MEYKEEDFILLSGIQHFSFCRRQWALIHIEQQWQENLRTIEGQILHERTHDNTVREKRGDLIVSRGMAIFSRSLGITGACDVVELHKASDGVSIFGRDGNYKPVPIEYKRGKPKEDESDILQLCAQAMCLEEMLLCEIPEAFLFYGETKRRLKVTLEDELRQRVQTIVKEIHELYDKRYTPKVKPSKRCKACSLAEICMPKLCKNPSAVNYIKKNLLEVEE
>NC_009633.1|WP_012062880.1|1759693_1760554_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSNFENKIDFAVVISVKNANPNGDPLNGNRPRENYDGFGEISDVCIKRKIRNRFQDMDQAIFVQSDERRTDGFRSLKDRADGCEELKKSSKDKEQYAKIACEKWIDVRSFGQVFAFKKGGDDNSVSIGIRGPVSIHSAVSISPIEISSMQITKSVNGETGKDPDKKSPDTMGMKHRVEFGAYVIYGSINTQLATKTGFNQEDSELVKKALITLFENDCSSARPDGSMEVCKLYWWKHNSKIGQYSSAKVHRTLRIAPTIEMPKDINDYNITHETLDGLAPEIYDGI
>NC_009633.1|WP_012062879.1|1757722_1759678_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWIHKLYDTYENCKSEVGVARTDSKTPLLPLSHTIVNSNIEIVVDIHGNFRRARNVSKSEAMTIAPCTEDSASRGNGNNPHTLFDKLQYVAGDYTSFFNDKRDKKFFIEYIKLLEAWSNSEYKDEKVIAVLNYLKKERLVADLISEKLLEVDENSHVTNKWFGDKDNKPMKTSDIFVRFIVEIPGDVNCRLWENTDILRKYHNHYLNTKTKYGLCYIQGNNMLTTLKHQSKIRGNGDSAKLISANDENGFTYLGRFSDSNQVVSIAYETSQKAHNALKWLVDIQGQKFGNPKDGQKIIVAWGTKNQTIPQILEDTQGGIFGKEETAIVSTEKEFAQRLNKAIAGYGCDLDTKAEIVIMGLDAATTGRLSIAYYRELYGTDFLNRIKHWHSTCIWQHSYKIIADGFDEKGKAKFKTISFIGAPSPKDIATIALGSPRENSKTQKKHLELKDSLLKATVERLLPCIIDGAKLPYDLVNSVVNRVSNPVSMEKWEWEKALTITCALVKKYKYDKLKEVWEMALDENQKDRSYIFGRLLAIAQQIEEYALYTTGEKRPTNAERLMHQFKLHPYKTWGIITDKLGPYIARLGSKGTGLTELMTQVNSMIPYEEFTSPKKLDDSYILGYYCQRQVFIDEKNIRIQANAIKKLGQAN
>NC_009633.1|WP_012062878.1|1756986_1757739_+|type-I-C-CRISPR-associated-protein-Cas5
MKKENSVEFKVSGRYALFSDPINRIGGEKFSYQVPTYQALKGILESVYWKPTLIWIIDEVRVMNLIKTQSQNIRPVNFSGTSKGTGTPLNTLSIYTYLTNVEYQVKAHFEWNYNRPNLEKDRNENKHYIVAKRMINRGGRRDVFLGTRECQAYVEPCKFGEGEGAYDHYGSLSFGLMFHGFDYPDETGEDKLTARLWSPVMNNGYIKFLRPDECTIKRELSSMKPKVFDENNFSGLEEFEEEGDIIELDS
>NC_009633.1|WP_012062877.1|1754575_1756972_+|CRISPR-associated-helicase/endonuclease-Cas3
MFCAHINPTTRKEQSVKEHLHSVSKMSMEYGAKISLGATAELIGMLHDMGKQTDKFNSYIHYSATNPSDKSLRGSIDHSTAGAKFIYDNFYHTKDPYQKFTAQLISLAICSHHGGLIDCLDLNGMDRFTDRMNKDKDFLYEEALSNYRLEFSEMKHLNDLFNKSKEEIKAILTKVNKIDGSAKFGQFAAGMLEKYLFSCVIDADRYDTYLFMEGKESKQNIDKSDLWNELADVLEVKLKSYPKSGKIDLLREEVSIACKNFGENKTGIYQLAVPTGGGKTLSSLRYALQHAKKFNKERVFYIIPFTTIIDQNAKDIKDILGREDIILEHHSNLVVDNDQEEYKLLTERWDSPIVLTTMVQFLDTLFSGGTQGVRRMHNLTNSIIIFDEIQAIPIKCINMFNSAINFLSNICNATIILCTATQPLLSTTEMPLKLSENPNIIPDMHEKFEQFKRVNLIDKRTTEGYSAASLKDFVLDTMERVESVLIIVNTKNTAKEVFNELKKANADLPPEKQYAVFHLSTGMCPSHRMKILKEMRTKLGHERVICISTQLIEAGVNISFGSAIRSLAGLDSIAQAAGRCNRHGETTCSDVYIVNIEGESVNRLVDIKEGQECTRRVLDEFKENPKSFDHDLLSPKAMNQYYQYYFHNRSAEMNYTLAKPNDDKSMYDLLSGNKEAFNAFNSRNGYKSELMLRQAFKTAGSNFQVIDQNTTGVIVPYGRGKTLITLINGACNLSELKEYLKEAQQFSVNLFETDKRKLEEIGGIVGLKDGAIFAIRDGFYEDDVGVTFENAPMEFYNY
>NC_009633.1|WP_012062876.1|1752159_1753947_-|indolepyruvate-ferredoxin-oxidoreductase
MSSQSKGVLTGNEALVRGFYEAGGLVAASYPGSPTVEVLETIKSYEGVYAEFSTNEKVALEVAIGGSFTGARSMAVMKHVGMNIASDPLMTFTETPIRGGFVLVSGDDPGMASSQNEQDNRLFAKFANMAILSPGNSQEAKDYTKLAFSLSEDFQLPTLLNITSRVCHSRSVVTMGEREEHAPTGFDLDPVKYAMIPKNTYQAQYFMKDRLEKLQEYAYDCPVNQLEEKDGATILVIASGLMYYNLKEIDPPVSIYKLGLTYPLSIKRIKELSEQYDEIIVLEEMMPFIENELKIHGIPCSGKSYFSFTGELNSEEIAEGLYKAGVLKKKIDRAEKTAAVARPPLFCSGCPHRPIFDILKKSKVKIMGDIGCYSLAAQAPFNGSSSIISMGASIGITKGVQKALALKEDPKPLVAVIGDGTFFHSGIPGFINLLHQADDKDNLTIIILDNRTTAMTGGQSNASSGHYNLADDMNIDIESLIKTIGFKQVVMVDQFKYDEAKKVINNEIKRPGISIVIATRPCALKYKIKEPHFYVDPSICIGCRSCVNTNCPPIRMKEYKDYDKLKSSIDANMCVGCSICAQVCPVNAIKRSESD
>NC_009633.1|WP_012062875.1|1751573_1752146_-|indolepyruvate-oxidoreductase-subunit-beta
METKNIMLAGVGGQGLVLTTRIICDAALEEGLDVKSNDVVGLSQRGGMVWGSVRIGKSIASPNIPEGEGDILMGMEPLEAYRWRYLMKSTAIIVLNQNRVYPTPVLLEKEAYPQAEVAGLSKDFTYSEIDALEEAKKLGNDKVANTILLGMMAKHLPLSQDSWKRSLTKNVPSKAIDVNLKAFDLGFEFS
>NC_009633.1|WP_012062874.1|1750763_1751501_+|SagB/ThcOx-family-dehydrogenase
MTKNIGKEFMKYTKYEYLVPSDQEKELPQPPLENAYEGSEDKINLPSPDKIKVGEIDLKKAMEVRKSLRKYSQKSLEIEELGFLLWYTQGVKSVVSRPATLRTVPSAGARHALETYLLINQVEGIKPGIYRYLALAHQLVPINLADTLADKVTQACHNQEFVNQSAVTFIWVADIYRMKWRYGERGYRYIHLDAGHVCQNLYLAAEGIDSGVCAIAAFDDDEINRLIGVDGEQQFVTYIATLGKK
>NC_009633.1|WP_012062884.1|1763999_1765043_-|NAD(P)H-dependent-oxidoreductase
MIHVIIPGEVSTHLHDMMESAVEGGAYQVHKTSKDLPDLQNCSLLFVVQLDEIGTNIPLLEMLTTLKRRGDDSLLGAQAALIISSDTEYYTRSMTKTILFLANQMGCRFMGHPLVEVIGGFQNFMTWQKALDLSLEEIALERAKSLGKRLLNYQPQIIKRPKIVALHSSNRRTSNTLILWDLVKNHLDVCDIQEFHVENGTVLDCIGCPYQTCKHYGMQTSCFYGGMMVTEIYPAIEAADAIVWICPNYNNSVSANLIAVINRLTALYRKIKFYDKSIFALVVSANSGGDSVSKQLFDSLNINKGFQLPPYFALTAIANDPGSIFWNPQIEEKAEVFAHNMLKEIKA
>NC_009633.1|WP_012062885.1|1765039_1766284_-|lactate-dehydrogenase
MFYYRFQDNILFSRNHYPGFEQIDEVEVQKHEGSLYYLKSMDPNKSRRTFSLSHPALIFTDKENLNLIHQEEFTSTDPLPLWIQHKIEAGSVTGVNTDYPDWETVLTQSHPKKWRVHIAGLGDVGGTLLMGLRLLGDQWVDRIGIYDRTPNKLKRWEQEINQIYNINDSLYPDVHILENDQLFNCDMFVFCIAARVPAIGDEAQDVRMVQLEANSEIIEVYAKQARDAGFKGIFAVVSDPVDLLCKVVLNSSNTDNAGNYDFKGLAPEQIRGYGLGVMNARARYYSKENPKALHFEQEGRSFGPHGADLVIADSIYNYNESLSAYLTEKAKKANLEVRQLGFKPYIAPALSSGALSILSTIKGEWHYSATYMGGVYMGAKNRLISSGTEVETLTLHPLLLNRLQETYDKLEAIL
>NC_009633.1|WP_012062886.1|1766302_1771198_-|cytidyltransferase
MQLDLKKQLYDDITTKLLEQDFLTQYHLTEELISSEIENPHFMQQLNTIIEDGDYSCQRVYDLCKHIFSSLWKGTPPELPLHYIYQFTLSKSFPHSVEITLDPQNDNACLLYLAVLRIVSDYQRRTEDGTWQSKYPLDFLTSEEVKQLPTPRGEYKSFVKAFKEEFIYEMMKLNFEVMGHNTLDHICAVHYLSLHVGRQLLDRGVSVDLGRVSGAAAGHDIGKFGCRSFESKRVAYLHYYYTDQWFNEHNFTFIGHIALNHSVWDLELENLSIESLILIYSDFRVKNVLDDSGKYVMKMISLEEAFQTILEKLDNVDDEKEKRYRRVYQKLRDFESYLLDFRVLVDPDGHPSELLDEKERRYYSLMHGNLITENIKYLAIHHNIHLMYKLRDETSLNELIEVIRGEKDPKTLREYLDLFDEYSTYLTQKQKVIMLKFLYEKLIHPEEDIRSQCAELIGSLIATFDENYRKEIPEGVTLDPPTITSCGLLTEYLERFLWPDHKIISLHHRWIRYSVRPFIASLFKLCPEYQLKNYKNIILPYYNHNTADHAAITMDLFETLNFIPISSSDLYFDQLGTYILEGIKSERIDLQVAALETMVYFIDFVPAGHNIYAELKAILHQQELTQSIPAIHYLHYQLALLIFIDKADIIRFQQHYEIGRNKVPDIYLSNLKTATNWITKKTHVELLLRYSIESSSVSKFYTAMHFCNLLKVSAVESVRNRAGESLVNIFSHLPIEQRNDIAIDLLRALEIEGVQFTKFIPNYLGQIIGYLKPIELDEIIEDFYEKIKQSNSQTSSLLLKTIGIFLSHYAKYQNLFDEDTGKYELRRQKLLSILLNGLVHDDVQINQIAFSVIGKDLFRSHRITLEEKHEIFQQIAKKLLILLSDTEEKELTFLTNSAGLNHIYRFISDYHFFVDVIEIKVPDKIAFFPGSFDPFTLSHKEITRAIRDTGFEVYLTVDEFSWSKRTQPNLIRKNIINMSVADELDVYLYPEDFPVNIASPEDLKKLVHNFPQSQVYIVVGSDVILNASAYDSPTTEFCISQLPHVIFERRVGNFAIEQDTLLHDMITQMKGPVLRLNLPPQYEDISSSQIRDYIDDNRDISNLIDPLAQRYIYEHSLYRREPQYKSFTQPVSMDFDFINGPDDDLIKELVSIFHKNESKSYKSIQQALTMPQCTLLLARNANDPEHILGYSLFHWLPSDMFYQTFTDRYLSEQVRNQYVGRIVCISGLFVQDHATFDDLHQVVLSETLAYALKHDYSFGVFFNTIEPEVSPNMISLLNLHGFEDISYEKSCPLFIVNMTNPCTLTLDINTIIKEPFNSNYLIKKTVLKTRKKLQEAFTKLYPGHLVLSFDRKIIDEVIMKKICMENSVPPIAMVPRQLGEFMCVPFGNILNRAIVPNTVTKSLHIERLFAPDMQSFTIGAYPFYLDIKNQVRMIGSFDRPVILVDDLLNKGYRLKGLDPLLKSENINVKKVIVGLLSGRGKELMEIQNRQVDSAYFLPKLRLWFNEALLYPFIGGDTLWRGVYPEKNILSSVNFILPYTSPSFIKDVPKETLYDLSETCLQNAIDILKAVEIEYQRINEKKLTLSMLGEVFLYPRYPDQGENVSYNYNVHPSQHLERDLEQLKRLKYSFTI
>NC_009633.1|WP_012062887.1|1771687_1772071_+|RDD-family-protein
MHISSPLKRFIGNLLDNALFGIIVMFFFMMAAAINSEALVAISFFAAWGIQLYFWSKGTSLGKNVMGMKVVNKYTQEPVGLGLMIIRETIGKFLSGLIFSLGYIWILIDSDHQGWHDKFIQSIVVDW
>NC_009633.1|WP_012062888.1|1772262_1773090_+|transporter-substrate-binding-domain-containing-protein
MKKGFGKFIKIGIVALSLIILVTGCSQAPGASSEQSKLEAVQSSGKLVLGTSADYPPYEFYAEVDGALQVVGFDIEIAKEIAKDMGVELEIRDMDFDGLLSALVTGNIDMIIAGMVPSDERKKSVDFSVPYYSAEQTMVVRAADFDKFSTVEDFTGLTVGAQTATIQEEIAKEQIANAELRTLSVITDLVMDLKTNRIDGVVLVEPVAKAYAENNDDVVVSQLHFGQEDGVAVAVAKDTDDFLNSINTTLERLLAEDMISQFIVEATELASEQSE
>NC_009633.1|WP_012062889.1|1773186_1773840_+|amino-acid-ABC-transporter-permease
MDFGFLTKYYGMYLTGARNTLLLAFFTVLLGVFFGVALALMRLSKNPILKGFAASYIEFIRGTPLLVQLLIIYYGLPHLTGMRFPDLFAGIVALTFNSAAYIAEIIRAGIMSVDKGQMEAARSLGMPHSMAMKHIIIPQAFKNILPALGNEFIVVIKESAIVSIIGISDIMRTATIVRGNTYRPFEPLIVAAVMYFMITFTLSNLMRMMERRLRASD
>NC_009633.1|WP_041720527.1|1773832_1774564_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKVENLHKSFSDLHVLKGINREIKKGEVVVVIGPSGSGKSTFLRCLNLLEEPNDGKILYNGVNIVDKKNDINKYREKMGMVFQQFNLFPHMTVLENIMLAPMQIKNMNRNDAMKIAMDLLNTVGLSEKAETYPNKLSGGQKQRIAIARALAMQPEVMLFDEPTSALDPEMVGEVLDVIKKLAAQGMTMVVVTHEMGFAREVGDRVIFMDEGRIVEEEAPEVLFKSPQNPRTQDFLGKILRSY
>NC_009633.1|WP_012062891.1|1774789_1778320_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MARNRKTMDGNEAAAYVSYAFTDVAAIYPITPSSSMAEGVDEWAAHGKKNIFGQTVRVVEMQSEAGAAGAVHGSLQGGALTTTYTASQGLLLMVPNMYKMAGELLPAVFHVSARALAAHALSIFGDHQDVMATRQTGFAMIASNSVQEAMDLGGIAHLAAIKSRVPFLHFFDGFRTSHEYQNIEVLEYDELNRLLDHQAVKEFRDRSLNPERPVTRGTAQNPDIYFQGREVSNPYFDAVPDIVADYMKEITRITGREYQPFNYYGDPNADRIIIAMGSMCEVIEETIDYLMAQGEKVGAIKVHLYRPFSPKYFFDVLPKSVERIAVLDRTKEPGSLGEPLYEDIRSLFYGRQKEPLIVGGRYGLGSKDTTPSQVVAVFNNLKQSQPKDQFTVGIKDDVSNTSLPEEEIIEVSPEGTINCKFWGLGSDGTVGANKTAIKIIGDRTDLFAQAYFSYDSKKSGGTTISHLRFGKKPIKSPYLIYHADYIACHNKSYVYLYNLLKGLKEGGIFVLNCPWTSEELEEKLPASLKRQIAKTKAKFYIIDAVKVAGEIGLGARINMIMQAAFFKLAQVIPVEEAVKYLKEGIEDAYGKKGEKIVEMNNKAVDQGVNALTQVEVPSHWSDAKDQAVPERKESDFVKNIQRVMERHEGDELPVSAFKGMEDGTFPMGTTAYEKRGIAIIVPQWQTDKCIQCNQCAYICPHSVIRPFLLDEEEISKKPETFETKDAIGKGLEGYQYRIQISPYDCTGCGNCADICPAPKKALVMVDAEQEMSKQEENWEFSAEHLTYKDHLMTKSSVKGSQFAQPLLEFSGACAGCGETAYVKLLTQLFGDRMMIANATGCSSIWGASAPSVAYTTNSCGRGPSWANSLFEDNAEFGFGMHLASQQMRSKLADLMKEALKSDLDEDCKQAFRQWLDNKQDGEASKEASRKIVSLLEKHHHHDPIIKEILEKKDYLTKKSVWIIGGDGWGYDIGYGGVDHVLATGEDVNLLVMDTEIYSNTGGQSSKATPLAAVAKFAAAGKRIRKKDLGLMAMSYGYVYVAQVAMGANMNHLAKVVQEAEAYPGPSLVICYAPCISHGIKSGMGTSVRQEKKAVEAGYWHLYRFDPRLKDQGKNPFVLDSKEPKESFREFIEGEIRYSQILNVFPEEADELFTAAENSARDRYMTYKRLADMNFEQ
>NC_009633.1|WP_012062892.1|1778720_1780196_+|4-alpha-glucanotransferase
MERSSGILMHISSLPSPYGIGSFGKEAYEFIDFLSIAGQKYWQILPIGSTGYGDSPYQSFSTFAGNPFFIDLQLLKEEDLLEARDFDNIDFGDNPTKVDYSKIFENKLPVLRKAFENGKIRYGDEVEAFKKENVLWVEDYGLYMALKFHFNSKSWQEWEQDIKLREQEAIHYYKERLKDEIDYWIFLQFLFFIQWNRLKNYANDKGIKIIGDIPIYVAEDSVDAWVNSEIFLFDEYNRPIHVAGCPPDGFSETGQLWGNPLYRWDVLEERGFDWWVERISGSMRLYDVIRVDHFRGLESYWAVPYGEQTAEGGNWLKGPGIKLFHAIEAQLGHVEIIAEDLGFLTPDVIALREQTKYPGMKVLQFAFNIWEESDYLPHNYDKDCVVYTGTHDNDTVMGWLQNGPRDDVAFAKRYLHLNEEEGVHWGFIRGAWSSVGDLAIAQLQDFLGLGSEARMNTPSTLEGNWHWRVKKEALTRELAEKIGGLTKLYGR
>NC_009633.1|WP_012062893.1|1780204_1782565_+|glycogen/starch/alpha-glucan-phosphorylase
MLNKRKFKESVERNIRVNFLKTIKTASGQERYHAVVKTLMEEVVTHWQETNERHHNKKKACYFSAEFLMGRAFGNNLLNLGIYEEVKEVLNELEIDIDEVEKAEADAGLGNGGLGRLAACFLESCATMNLPVTGYGIRYHDGIFKQRFVDGFQVEEGDPWLAHGEPWSFRRSEDAVTVVFGDESVKAVPYDTPIIGYGNQTINTLRLWQGEPLINFDFNLFNEQRYDESVKEKNRAEDISRVLYPNDSKEEGKILRLKQQYFFVSASLQDLVKKYKETNGNEFEKFHQYHAIQLNDTHPVVAIPELMRILTDEEGLCWEKAWGITTKTFSYTNHTILTEALEKWDVKLYQKMLPRVYEIVKGIDEQFIEFLNEKSYEKKKIDQMKIISNGRINKAWLAIYGSHTINGVAEIHTNILKHKELKDWYELYPQKFQNKTNGITPRRWLALCNQELSALITALLNTEDWITDLSQLKKLEKHQYDDEVLKRFMAIKRTKKKQLAAYIFKKEGIQIDPNSIYNIQIKRLHEYKRQLLNAFHILDLYYELKENPDIQRTLRTFIFGAKAAPGYVRAKGIIKYINEVAKLVNNDPQMKDQMKVAFVENYNVSYGEKLFPAADLSEQISTVGKEASGTGNMKFMLNGSPTIGTNDGANIEIVQEAGEENNFIFGMKIEELQAMEDTYEPRAYYESVPGLKRVVDTLIDGTFDDGDTGMFQELYDSLLEGASWHKPDNYYLLKDFDDYREAQRKAEIAYADEIAWARKCWMNIANAGKFSSDRTITEYAKQIWHI

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Crispr_ID: NC_009633_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_9

2274931-2278995

Unclear

Consensus_repeat	Method
CCTTTAATTGAACTAGAGTAGAATGTAAAT	PILER-CR
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CRISPRCasFinder
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CRT

61 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of NC_009633_9

>merge|NC_009633|9|2274931-2278995|PILER-CR,CRISPRCasFinder,CRT
CCTTTAATTGAACTAGAGTAGAATGTAAATGGTGTTACTGGACATAATAAATATTGCACCAGACTGCCTTTAATTGAACTAGAGTAGAATGTAAATAATAATTGTGATGTGACTTAAATTATCCTTTGCTGCCTTTAATTGAACTAGAGTAGAATGTAAATTTTGGAGTAATTTGCAATCTGCTATATAATCCCTCCCCTTTAATTGAACTAGAGTAGAATGTAAATTTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATCCCTTTAATTGAACTAGAGTAGAATGTAAATTTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGTCCTTTAATTGAACTAGAGTAGAATGTAAATTATTTTGCATACATTGCTATAACCCTCAAATCATCTTCCTTTAATTGAACTAGAGTAGAATGTAAATGTGTTAGAACATTGTAGTAAAAACAGTATCGCCAACCCTTTAATTGAACTAGAGTAGAATGTAAATAAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAACCTTTAATTGAACTAGAGTAGAATGTAAATAGATTTAACAGTGTTGATACTAACATCATATTTTACACCTTTAATTGAACTAGAGTAGAATGTAAATATGACTAGGAAAGTAATCACTACGATTGGCATTATTCCTTTAATTGAACTAGAGTAGAATGTAAATATGATTAATAGGTCCATCTTCATTTTTATAAAACACCTTTAATTGAACTAGAGTAGAATGTAAATAGAGAATATAAGATAGACTTATTCAACGCATTAGATTCCTTTAATTGAACTAGAGTAGAATGTAAATCCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAACCTTTAATTGAACTAGAGTAGAATGTAAATAATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCCCCTTTAATTGAACTAGAGTAGAATGTAAATTGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGGCCTTTAATTGAACTAGAGTAGAATGTAAATCAGCAACCACCAATTCAAATCTATATTCAAATAGTCCTTTAATTGAACTAGAGTAGAATGTAAATCGCTTTAAGCAACTAACTAAGGATGTAGAACAAAATCCTTTAATTGAACTAGAGTAGAATGTAAATATAGATAGTGAATTGCAAACTATTGAATTGATATTTACCTTTAATTGAACTAGAGTAGAATGTAAATAGATATGCCTGTCATTTCAGATAGTTTGGTCATACTCCTTTAATTGAACTAGAGTAGAATGTAAATAAAGCTAAAGGATCACGTTCATATATATCTTGAGACCTTTAATTGAACTAGAGTAGAATGTAAATCGAAATAGGCAGAATGATGGAAATGTTGTTAGATCCTTTAATTGAACTAGAGTAGAATGTAAATATTACTAGCAAAGTAAATAAGACTAAATTACCTACCCTTTAATTGAACTAGAGTAGAATGTAAATTTGGAAGGACTTGGTTCATAATGATAATGGCATTTACCTTTAATTGAACTAGAGTAGAATGTAAATTCTAATGCATTATGCAAACCCTGAATCCAACCAAACCTTTAATTGAACTAGAGTAGAATGTAAATTCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACTCCTTTAATTGAACTAGAGTAGAATGTAAATTTTAATACTCATGTAATTTACGTTACTTTAGATAACCTTTAATTGAACTAGAGTAGAATGTAAATGTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAACCTTTAATTGAACTAGAGTAGAATGTAAATAAACAATAAGGAGTGGTTTAAATTATATTATTATTCCTTTAATTGAACTAGAGTAGAATGTAAATAAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGCCCTTTAATTGAACTAGAGTAGAATGTAAATTTCTAATAAAAAACTGGATCATGAGATCGTGAAGATCCCTTTAATTGAACTAGAGTAGAATGTAAATAAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAGCCTTTAATTGAACTAGAGTAGAATGTAAATAGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGGCCTTTAATTGAACTAGAGTAGAATGTAAATAGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGTCCTTTAATTGAACTAGAGTAGAATGTAAATGGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCACCTTTAATTGAACTAGAGTAGAATGTAAATACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAGCCTTTAATTGAACTAGAGTAGAATGTAAATGAGGGAAGAGACTACCACTATCCACCGTAAAAGCAACCTTTAATTGAACTAGAGTAGAATGTAAATATTAGAGTGTCCTTAGACAATGCAATCATCCGAGACCTTTAATTGAACTAGAGTAGAATGTAAATCAACATCTCCTGCTCCATTCCTGATGATCTCAAGGCCTTTAATTGAACTAGAGTAGAATGTAAATGTTGACATAACAAAGGATAGTATGCCGTTTACACCTCCCTTTAATTGAACTAGAGTAGAATGTAAATCCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAACCTTTAATTGAACTAGAGTAGAATGTAAATTTGAAACGAAAGGCTACGAATACCCTTACAGAACCCCTTTAATTGAACTAGAGTAGAATGCAAATATCGCACACCTTGTTTTTAACTACTTTCAATCCACCCTTTAATTGAACTAGAGTAGAATGTAAATAACTATAATACAGGTCGCATTACTTTTAAATCACTAACCTTTAATTGAACTAGAGTAGAATGTAAATTGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGCCCTTTAATTGAACTAGAGTAGAATGTAAATATGTGGGAAGGAACACGCACTAAAGCGCAATATGAACCTTTAATTGAACTAGAGTAGAATGTAAATAGTAGTCCTTAGCTTTATGATAGAGATATTTAATTCCTTTAATTGAACTAGAGTAGAATGTAAATTTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAACCTTTAATTGAACTAGAGTAGAATGTAAATATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAACCTTTAATTGAACTAGAGTAGAATGTAAATATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTCCCTTTAATTGAACTAGAGTAGAATGTAAATTAATTAACCCTCCTTCGTATAATATTTGAAATGCGCCCTTTAATTGAACTAGAGTAGAATGTAAATTTCCTTATAGGTTCCTTTAAAACATACCAAGCATGGCCTTTAATTGAACTAGAGTAGAATGTAAATTTGTTTGAGGAATCCAATTCAATCCATCATCTGTGCCCTTTAATTGAACTAGAGTAGAATGTAAATGAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGGCCTTTAATTGAACTAGAGTAGAATGTAAATGTAGAATTAGGCGGTAAAATGAGAAACATCAGATACACCTTTAATTGAACTAGAGTAGAATGTAAATTGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTGCCTTTAATTGAACTAGAGTAGAATGTAAATCCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCTCCTTTAATTGAACTAGAGTAGAATGTAAATTTATCAAGGACCTCTTGTTTGATTTCTACATATCCCCCCTTTAATTGAACTAGAGTAGAATGTAAATAAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAATCCTTTAATTGAACTAGAGTAGAATGTAAATTGAGCAGGCAATAATCGTGTTATCTCAAAACACTTACCTTTAATTGAACTAGAGTAGAATGTAAATTAAATTTATGCAGACATGGAATGCTGTGGCCGGATCCTTTAATTGAACTAGAGTAGAATGTAAAGTACAAAGATAGAGACAATCAACTCATGTGTCATAACCCATTAATTGAACTAGAGTAGAATGTAAAG

>NC_009633|9|2|2274931-2278995|PILER-CR
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGTGTTACTGGACATAATAAATATTGCACCAGACTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATAATTGTGATGTGACTTAAATTATCCTTTGCTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGGAGTAATTTGCAATCTGCTATATAATCCCTCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TATTTTGCATACATTGCTATAACCCTCAAATCATCTT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTGTTAGAACATTGTAGTAAAAACAGTATCGCCAAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATTTAACAGTGTTGATACTAACATCATATTTTACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGACTAGGAAAGTAATCACTACGATTGGCATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGATTAATAGGTCCATCTTCATTTTTATAAAACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGAGAATATAAGATAGACTTATTCAACGCATTAGATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAGCAACCACCAATTCAAATCTATATTCAAATAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGCTTTAAGCAACTAACTAAGGATGTAGAACAAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATAGATAGTGAATTGCAAACTATTGAATTGATATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATATGCCTGTCATTTCAGATAGTTTGGTCATACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGCTAAAGGATCACGTTCATATATATCTTGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGAAATAGGCAGAATGATGGAAATGTTGTTAGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTACTAGCAAAGTAAATAAGACTAAATTACCTAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGGAAGGACTTGGTTCATAATGATAATGGCATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCTAATGCATTATGCAAACCCTGAATCCAACCAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTAATACTCATGTAATTTACGTTACTTTAGATAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAACAATAAGGAGTGGTTTAAATTATATTATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCTAATAAAAAACTGGATCATGAGATCGTGAAGATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAGGGAAGAGACTACCACTATCCACCGTAAAAGCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTAGAGTGTCCTTAGACAATGCAATCATCCGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAACATCTCCTGCTCCATTCCTGATGATCTCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTGACATAACAAAGGATAGTATGCCGTTTACACCTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGAAACGAAAGGCTACGAATACCCTTACAGAACC
CCTTTAATTGAACTAGAGTAGAATGCAAAT	ATCGCACACCTTGTTTTTAACTACTTTCAATCCAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AACTATAATACAGGTCGCATTACTTTTAAATCACTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGTGGGAAGGAACACGCACTAAAGCGCAATATGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGTAGTCCTTAGCTTTATGATAGAGATATTTAATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAATTAACCCTCCTTCGTATAATATTTGAAATGCGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCCTTATAGGTTCCTTTAAAACATACCAAGCATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGTTTGAGGAATCCAATTCAATCCATCATCTGTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTAGAATTAGGCGGTAAAATGAGAAACATCAGATACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTATCAAGGACCTCTTGTTTGATTTCTACATATCCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGCAGGCAATAATCGTGTTATCTCAAAACACTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAAATTTATGCAGACATGGAATGCTGTGGCCGGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAG	TACAAAGATAGAGACAATCAACTCATGTGTCATAAC
CCATTAATTGAACTAGAGTAGAATGTAAAG

>NC_009633|9|9|2274931-2278995|CRISPRCasFinder
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGTGTTACTGGACATAATAAATATTGCACCAGACTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATAATTGTGATGTGACTTAAATTATCCTTTGCTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGGAGTAATTTGCAATCTGCTATATAATCCCTCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TATTTTGCATACATTGCTATAACCCTCAAATCATCTT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTGTTAGAACATTGTAGTAAAAACAGTATCGCCAAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATTTAACAGTGTTGATACTAACATCATATTTTACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGACTAGGAAAGTAATCACTACGATTGGCATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGATTAATAGGTCCATCTTCATTTTTATAAAACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGAGAATATAAGATAGACTTATTCAACGCATTAGATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAGCAACCACCAATTCAAATCTATATTCAAATAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGCTTTAAGCAACTAACTAAGGATGTAGAACAAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATAGATAGTGAATTGCAAACTATTGAATTGATATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATATGCCTGTCATTTCAGATAGTTTGGTCATACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGCTAAAGGATCACGTTCATATATATCTTGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGAAATAGGCAGAATGATGGAAATGTTGTTAGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTACTAGCAAAGTAAATAAGACTAAATTACCTAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGGAAGGACTTGGTTCATAATGATAATGGCATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCTAATGCATTATGCAAACCCTGAATCCAACCAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTAATACTCATGTAATTTACGTTACTTTAGATAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAACAATAAGGAGTGGTTTAAATTATATTATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCTAATAAAAAACTGGATCATGAGATCGTGAAGATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAGGGAAGAGACTACCACTATCCACCGTAAAAGCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTAGAGTGTCCTTAGACAATGCAATCATCCGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAACATCTCCTGCTCCATTCCTGATGATCTCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTGACATAACAAAGGATAGTATGCCGTTTACACCTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGAAACGAAAGGCTACGAATACCCTTACAGAACC
CCTTTAATTGAACTAGAGTAGAATGCAAAT	ATCGCACACCTTGTTTTTAACTACTTTCAATCCAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AACTATAATACAGGTCGCATTACTTTTAAATCACTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGTGGGAAGGAACACGCACTAAAGCGCAATATGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGTAGTCCTTAGCTTTATGATAGAGATATTTAATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAATTAACCCTCCTTCGTATAATATTTGAAATGCGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCCTTATAGGTTCCTTTAAAACATACCAAGCATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGTTTGAGGAATCCAATTCAATCCATCATCTGTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTAGAATTAGGCGGTAAAATGAGAAACATCAGATACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTATCAAGGACCTCTTGTTTGATTTCTACATATCCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGCAGGCAATAATCGTGTTATCTCAAAACACTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAAATTTATGCAGACATGGAATGCTGTGGCCGGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAG	TACAAAGATAGAGACAATCAACTCATGTGTCATAAC
CCATTAATTGAACTAGAGTAGAATGTAAAG

>NC_009633|9|2|2274931-2278995|CRT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGTGTTACTGGACATAATAAATATTGCACCAGACTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATAATTGTGATGTGACTTAAATTATCCTTTGCTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGGAGTAATTTGCAATCTGCTATATAATCCCTCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TATTTTGCATACATTGCTATAACCCTCAAATCATCTT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTGTTAGAACATTGTAGTAAAAACAGTATCGCCAAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATTTAACAGTGTTGATACTAACATCATATTTTACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGACTAGGAAAGTAATCACTACGATTGGCATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGATTAATAGGTCCATCTTCATTTTTATAAAACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGAGAATATAAGATAGACTTATTCAACGCATTAGATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAGCAACCACCAATTCAAATCTATATTCAAATAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGCTTTAAGCAACTAACTAAGGATGTAGAACAAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATAGATAGTGAATTGCAAACTATTGAATTGATATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGATATGCCTGTCATTTCAGATAGTTTGGTCATACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGCTAAAGGATCACGTTCATATATATCTTGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CGAAATAGGCAGAATGATGGAAATGTTGTTAGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTACTAGCAAAGTAAATAAGACTAAATTACCTAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGGAAGGACTTGGTTCATAATGATAATGGCATTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCTAATGCATTATGCAAACCCTGAATCCAACCAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTAATACTCATGTAATTTACGTTACTTTAGATAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAACAATAAGGAGTGGTTTAAATTATATTATTATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCTAATAAAAAACTGGATCATGAGATCGTGAAGATC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAGGGAAGAGACTACCACTATCCACCGTAAAAGCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATTAGAGTGTCCTTAGACAATGCAATCATCCGAGA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CAACATCTCCTGCTCCATTCCTGATGATCTCAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTTGACATAACAAAGGATAGTATGCCGTTTACACCTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGAAACGAAAGGCTACGAATACCCTTACAGAACC
CCTTTAATTGAACTAGAGTAGAATGCAAAT	ATCGCACACCTTGTTTTTAACTACTTTCAATCCAC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AACTATAATACAGGTCGCATTACTTTTAAATCACTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATGTGGGAAGGAACACGCACTAAAGCGCAATATGAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AGTAGTCCTTAGCTTTATGATAGAGATATTTAATT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	ATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAATTAACCCTCCTTCGTATAATATTTGAAATGCGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTCCTTATAGGTTCCTTTAAAACATACCAAGCATGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTGTTTGAGGAATCCAATTCAATCCATCATCTGTGC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	GTAGAATTAGGCGGTAAAATGAGAAACATCAGATACA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTG
CCTTTAATTGAACTAGAGTAGAATGTAAAT	CCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TTATCAAGGACCTCTTGTTTGATTTCTACATATCCCC
CCTTTAATTGAACTAGAGTAGAATGTAAAT	AAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAAT
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TGAGCAGGCAATAATCGTGTTATCTCAAAACACTTA
CCTTTAATTGAACTAGAGTAGAATGTAAAT	TAAATTTATGCAGACATGGAATGCTGTGGCCGGAT
CCTTTAATTGAACTAGAGTAGAATGTAAAG	TACAAAGATAGAGACAATCAACTCATGTGTCATAAC
CCATTAATTGAACTAGAGTAGAATGTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_041720668.1\|2266635_2267364_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_009633.1\|WP_012063340.1\|2289320_2290499_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NC_009633.1\|WP_012063336.1\|2283914_2285951_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_009633.1\|WP_012063333.1\|2280370_2280862_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_009633.1\|WP_012063329.1\|2272968_2273460_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009633.1\|WP_041721520.1\|2265009_2266464_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_009633.1\|WP_012063334.1\|2280992_2282021_-\|ribonuclease-H-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379215
NC_009633.1\|WP_012063328.1\|2270713_2272945_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_009633.1\|WP_012063323.1\|2263886_2264834_+\|WYL-domain-containing-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_009633.1\|WP_012063326.1\|2269041_2269926_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_009633.1\|WP_012063335.1\|2282192_2283719_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_009633.1\|WP_012063330.1\|2273470_2274463_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_009633.1\|WP_012063339.1\|2288155_2289313_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NC_009633.1\|WP_012063325.1\|2267377_2269042_+\|CRISPR-associated-protein-Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_009633.1\|WP_012063341.1\|2290519_2290999_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_009633.1\|WP_012063332.1\|2279940_2280327_+\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012063338.1\|2287324_2287936_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|376839
NC_009633.1\|WP_012063331.1\|2274467_2274746_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009633.1\|WP_012063327.1\|2269912_2270692_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NC_009633.1\|WP_012063337.1\|2285967_2286960_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_041720668.1\|2266635_2267364_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.71102e-21
NC_009633.1\|WP_012063340.1\|2289320_2290499_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	0
NC_009633.1\|WP_012063336.1\|2283914_2285951_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.17027e-147
NC_009633.1\|WP_012063333.1\|2280370_2280862_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	6.59226e-44
NC_009633.1\|WP_012063329.1\|2272968_2273460_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.8224e-65
NC_009633.1\|WP_041721520.1\|2265009_2266464_-\|ISNCY-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.64085e-07
NC_009633.1\|WP_012063334.1\|2280992_2282021_-\|ribonuclease-H-like-domain-containing-protein	gnl\|CDD\|379215	pfam13482, RNase_H_2, RNase_H superfamily.	5.05791e-35
NC_009633.1\|WP_012063328.1\|2270713_2272945_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.25434e-57
NC_009633.1\|WP_012063323.1\|2263886_2264834_+\|WYL-domain-containing-transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.73821e-37
NC_009633.1\|WP_012063326.1\|2269041_2269926_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.44359e-64
NC_009633.1\|WP_012063335.1\|2282192_2283719_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.72861e-08
NC_009633.1\|WP_012063330.1\|2273470_2274463_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.12549e-151
NC_009633.1\|WP_012063339.1\|2288155_2289313_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.55575e-176
NC_009633.1\|WP_012063325.1\|2267377_2269042_+\|CRISPR-associated-protein-Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	2.82293e-26
NC_009633.1\|WP_012063341.1\|2290519_2290999_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	5.64595e-92
NC_009633.1\|WP_012063338.1\|2287324_2287936_+\|lactate-utilization-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	1.16663e-41
NC_009633.1\|WP_012063331.1\|2274467_2274746_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.00218e-27
NC_009633.1\|WP_012063327.1\|2269912_2270692_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.36647e-25
NC_009633.1\|WP_012063337.1\|2285967_2286960_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	2.71797e-149

>NC_009633.1|WP_012063331.1|2274467_2274746_+|CRISPR-associated-endonuclease-Cas2
MYIILMYDIMMDKTGAKVQRNTFKICKRYLTHIQNSVFEGNLTELNLMKLKKELSEYIRKEQDSFIIFNSRDEKWLTKEFLGKEDDKTSNFF
>NC_009633.1|WP_012063330.1|2273470_2274463_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGETFYIFQDGQLKRKDNNIVMSTLSGQKKNLKSEVTDEIYIFGEIETNSKLLNFLSQQKTTMHIFNYYGFYSGSFYPRESNVSGHLLVNQVKKYDNTEERVRIAKEMLKSAAHNIYRNLRYYNGRGTDVESAMKDIQRLIKRLDYCASIHELMGTEGNIRKIYYSTWNAIVKQDIRFEKRKKRPPDNLINSLLSFVNSLIYTTVLSEIYKTQLNPTISYLHEPGTKRFSLSLDIAEIFKPLIGERMIFSLLNKNQITEQDFEKESNYLYLKEAGKKKILIEYDQRLKRTLFHKGLGREVSYRYLIRLECYKLIKDIIDEKQYDGFKIWW
>NC_009633.1|WP_012063329.1|2272968_2273460_+|CRISPR-associated-protein-Cas4
MQKITGVMVYYYFVCQRKLWFFSRHYTMEDNSELVSMGKLIDETSYKREKKNILIDEEINIDFLKDWKVIHEVKKSRKVNEASKWQLKYYIWLLRNKGVEIEKGVLDYPLLRKREDVFVSEKDGKDLNEILDKIDEIRSLKIPPVISTKGICKKCAYYELCYI
>NC_009633.1|WP_012063328.1|2270713_2272945_+|CRISPR-associated-helicase/endonuclease-Cas3
MKRYLAKSNPEETIQEHTDHLIENYKLLKLIYPNLQVNWDILYLACLYHDLGKMNLKFQDKIKGIKKSEDEIPHGILSLAFINSKELKDKGFSKSDIKILAHAIAYHHEREFNYDHNDIKEEIELLKGEGIHFSYDKIEKISVKNLSAKYFSKDRIYQQEDEEMFLSYIKVKGLLNRIDYASSGDIDIEVKNNFLNNCLRDLMKEWQEKNSNAEWNELQRHMLFHKNDNVIAIAETGMGKTEAGLLWIGDNKGFFTLPLKTAINAMYDRIALDMIKEGYENKIGLLHSDTYSEYLNRDGEAIDIDEYYNKTKQLSLPLTICTLDQIFDFVYRYRGFESKLATLAYAKVVIDEVQMYSADLLAYLIIGLSYITKIGGKFAILTATLPDLVLDLLQEEEITFVSPKTFTNNQRIRHSVKVLNEQLNHNTVLDLYNENKVLVICNTVKEAQRMYKLLKDSKKIRNLNLFHSNFIKKDRKEKEKQILEIGHRESKQYGVWVTTQVVEASLDIDFDILITELSDLNGLFQRMGRCYRGREWEKDGYNCYVFDGGAEECSGIGYVIDEDIFQLSKTALQDVGGELKEEKKMNLVQSLYTTENLKATKYYKQIKSNIDYVTSIEDHEKSKNEVKKIFRNIHSITVIPREVYEENQEAISEYILILSKNYSKLMDEEERRVLRTKKSVIRSRLMEFTMSVPYHRGQGNIIKNININRYESIPILNCNYSKELGIQYIEQSKVKKAPFDNFI
>NC_009633.1|WP_012063327.1|2269912_2270692_+|type-I-B-CRISPR-associated-protein-Cas5
MDQTKKAVRIKLYQETANYKKPTSFQLKETYPLPPYSTVIGMVHSLCDYKEYKEMNISIQGKYFSKTNDLFTRYEFKNGMTFDSTRHQIQVGDFGVGQGVATTELLVEVELLIHIIPTDQDLIQEIEQAFLYPREYPSLGRREDLAVINEVTVVDISEKELEEDVVLDENYAAYIPLKMIRDEEVVLDGAEPGIRSRGTRYKLTKNYELVNQGTKKAPKIFRKWKKVEVLYTSHIKAVGDDEEGEFVLMDQDGNIVFAS
>NC_009633.1|WP_012063326.1|2269041_2269926_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKIQMKPKGLTLSMIFEAESANYGESVGNVASLKKIARGKGEQYTYISRQAIRYNIIEQLGEEFAQVRAEGSGDKKVIQFHPDATIMDYPELDFFGYLKTEKGSGGKKRSAKVRLSNAISLESFKGDMDFLTNKGLADRVQENMNIAQAEIHKSFYRYTVTIDLDQIGIDEVYDSVLPNEEKARRINQLLDTIALLYRDIRGRREDLKPLFVIGGVYDVKNPIFQNVLEVKDNNLIVDQIEGVLFDRIKKDTYAGLIEGKFNNDQDIKKRLNPQSMPNFFSTLKIKVNDYYGSN
>NC_009633.1|WP_012063325.1|2267377_2269042_+|CRISPR-associated-protein-Cst1
MAQRIRLEMNDWLYNAGLVGLYNILVHSGEKVKMNEQGIEMDQSQLENFEERYFTYFIEKYEVYLSWYKIISYKDVLTYHQKQNFNSFGEEELDSLNQYIKDVKHYLSSNSYKAAYELIGSQVTLLELAKKLQTIKLKKKETIGEKLIEIKETVNKLNEIIGHCMEEDYKKYLAGKNVIYTIIKNGWNGVSILNPQTKEKDIYMDYKNYFVKPVEDYMGDDKSTKKYNCFTCDREMKDLKNDLSFLNQVGFDVSRKASHTWDFVNDIAICPICKLVFSCVPAGMTYVYSKGIYINDNNSFQRAVNVNQRIKSEILKEHEDNRLLTYRALVKSIQEQIHEKIKYELADIQVIRYEEEKYRFNILTRQMIKIIQQSKHSLGYIHNSGFKEVNTYFNIYELVIERVLNNQNLFTLIHKLLSYKLSSPKNCRFTTSQVISVLEINFRFLEGMGYMQNADQDMIKKANVSGYYLREQYKVKGAKDKLNGVSYRLLNALKTNKKDMFMDTLLNCYLYAQKTVPSIFLDALEDEEKYKTIGYAFVAGLIEGKDHQNKEGDQ
>NC_009633.1|WP_041720668.1|2266635_2267364_+|CRISPR-associated-endoribonuclease-Cas6
MRFGVEIFLEKEMLPKDKNRIILSIIKNCFSSCNKEYYKALYKDTPNQTKDFTFSLYLGDCKFLREEILVPSKKIYLNFSTYHNEDGIMFFNSMLMNKGKAFSIRDNTYTIGKINLKREKLITEHQVIFKTMSPIVAREHQGDNKKTWYHSLNTEEGQAVFLENLQYQLKDAFGEGILMDSRKLSIEVSQDNKEVKVKNYGIEILSNLAKIRIQGAPYILDYLYKAGIGSKRGSGFGMVDIV
>NC_009633.1|WP_041721520.1|2265009_2266464_-|ISNCY-family-transposase
MLPHKQLSLAEIHSDCANYFENDKHHFLSLLKENLNLNEIIPLSFHRNYYASTGRPRKHHLTSMVWALLLQRIFSIPNDTLLLTFLQFSKELRDFCGFTNVPDASRFTRFKQDFLPDLQSFFEHLVDVTEPVCQAIDPHKASMTIFDTSGIEAFVTENNPKYANKIIKQLKAFKKAHNLDDSYDPYKAAYGSMPSHAAANPEIKQLYINGHFCYVYKFGMLTNGLGIVRDITFYDQDFMNAHPDIVVDKKSNSPDEDKSLGDAKALLPVLSDFFNKHPLIQPDTFIGDAAFDTISIYKGIFSDLKFNKAYIPLNPRSSLSSSEYTLTEDGIPCCPHDPKLPMKPEGNTSHLRCGIPTFKFVCPKMSWTKCGDGKYRRRHNCDNPCTSSPCGRMIYVYPEKDLRAYPGTIRGTDDWDETYKNRGVVEQTINHFKDSFCIANRRTQNAKTLHADLLLAGITQLVTVILADKIHQHKYIRSLKPLIA
>NC_009633.1|WP_012063323.1|2263886_2264834_+|WYL-domain-containing-transcriptional-regulator
MSKVSNALNMYFLLQVRGAMRVKEIAEALEVTPRMVKKYKQDLEMAGIYVGSKLGRAGGYYLENKRRLDAIGLTEEELITLKMANKTIQSGKYHYQSRFETTVNKILNCNQHTEEINYHNKSMRESDEILKKEKHTWVDINIAVNQNRRASIKYKSLKKHGIEIRERLVNPYGIFDYKGATYFYGYCDTAKDIRFFKLSRVIEYRVLDEKFTGNTDFNFDKVLEKSFGIYNDEFIDLKLNISYPMSEIVKEKQIAKDQRITEIDEKTICFEAKIKGYAEIKTWVMSLGSSAEVIQPSKLKEEIIAEAHKMTKIYQ
>NC_009633.1|WP_012063332.1|2279940_2280327_+|hypothetical-protein
MKIVINKVNRDTEDIIIDFTTEFGSGAATWNGNRMAEQDKEYDVQYDITDSLAWGEDVVLSKEKKFSIAITQEGIFITGVLEKVFKDGLVDLRFGKSIIQLEVEGNNLPRGQYVKVRADSLEVYDVNQ
>NC_009633.1|WP_012063333.1|2280370_2280862_+|M48-family-metallopeptidase
MMTQQPQRHCYYLGELYPLLIAVDPLITKSTILWDGKAFICKTPEANKTDFIDELKSFYIKESRKLIGERLKRYQPQIKVKYKSFTIENNDSKWGSCSSKRQLTFHWKLMIFPLTVIDYVVVHELCHLMHMNHDRSFWRLVGKVFPNYKEAMAILGVEKVRGI
>NC_009633.1|WP_012063334.1|2280992_2282021_-|ribonuclease-H-like-domain-containing-protein
MKVKTYFLKEQVILPQYLKMILNSQKYCIVDIETTGLSKIYHHVILIGILYPVDDHLVLKQFFAEDPKEEALILEAFEAEFKDFDTLITYNGVTFDYPFLIGRFKKHNVPFFNLAIQHIDILQHLRRYKHHLDIPNLKLKTVETYLGIFREDEISGKESVDLYNQYTLSRSIDLENKILLHNYEDIYYLGKIISVFNHFPRLQKYEMDQSLLFDTFEGSIRLSYHPSAVKISKNILTLKGKTSALDKALEKVYYLSHYQFQWQPDQRSFELTIPLFQGLTMAEDKCYFVDLSAFNISPDLFTKDTYGYLPVSGQYLVIAIHKDIYHAALIDFINILLGNIFM
>NC_009633.1|WP_012063335.1|2282192_2283719_+|S-layer-homology-domain-containing-protein
MSIHKKMGILLLGVMLLNISFVYGGFKDTISHWSRDYIIWGTRDVQLLTGYENRTFQPDNNISRAEFMTLLNKLLEEQQLNGEQHTSNQLKYGDLTEDFWGYDHIASLSNYINYHSKAKLKLGSIFTEAELKLNEPITRYEAALLIRNLVDGSFESDSTFYRDLSTRFKYYNEIMELSYAGIISGYEDGTFRPFRNMTRAESVATIKKTHDYLNNAEEDHPVREEIKMEPEVEPEIEPEIKPEIEPEVEAPVVEDNVVEIDRVTTTKNTELLQIEVRDSIELSPLFTVGANEEDEKFINVVATLEYLSIVDYIPYEERHLYDLTPIDTLWELKNENYHNVLGNNFYLLMYDENLEKERKTELVREAMDYYSNLEGLDVKGMESFFKIANGFVSTDELLEPVQKYLGNVENREAEHTMKMLLAEIYYTSGKYQEALGIYEALVGIQYNDIVVETMIAINYGYIINEVEGPESALVVLEELRNKIQDKNNYYFNQEKVDEYFSRAIESIE
>NC_009633.1|WP_012063336.1|2283914_2285951_+|ATP-dependent-helicase
METEENALLNDQQIEAIKHLNGPCMVYAGPGSGKTRVITERVSYLINVGHVNPREILVITFTKAAAEEMKNRFAKDESVEDSKKRQVTFGTFHSIFFRMLKSYCGYNLENILNEGEKFNVIKNIVRTLDVGNHDEEELIKDLILDIGKWKNNLFNRGEFIPKTLESSEFKRVLDSYENFKVDHGKIDFDDMLTKCYDLLRARPGVLEHVRNQYQYILIDEFQDINGVQFETIKLMAEPLQNLFVVGDDDQSIYSFRGANPQIILNFHDIYPKAQKITLNMNYRSQENIIKSANQLIKQNKCRVEKQIIPTVKANSEIQYSEPKNREEENRTICQFIELLMSEGYSYKDIAIIYRTNLLAGSLVDSLLDRNIPFVSRDHIYNVFEHWIAKDIIAYLKGAFNYYDYDSLMRIINRPTRYITKNAMRKAQTYHKDFITALKVKGELMPYQNKNIADLSYHLNNIKYLTTKEAIKYIRKDIGYDRHIENYCAEKRIRCEGLIETLNELEEASSRHEKIDGFLTHIKDMKSSLSQKSFHRTEEEQVELLTMHSAKGLEYKVVIILGAIEGVIPHHKSMDTLEDIEEERRLFYVAMTRAKERLYISSSLIRYEKPTEPSRFINEIRQNDNKKGSFVIGQEVEHKTFGKGLIEQISEKIMKVRFYRIKQVKPLDIDTCIHHKIVK
>NC_009633.1|WP_012063337.1|2285967_2286960_-|asparaginase
MTKPRIAIIFTGGTISMSVDPRVGAAIPSLSSEQIMSLVTNIDRYAHIESINFSELPGPHMVPKLMFQLRNLVLETLSREEIDGIIVTHGTDTLEETAYLLDLTINSPKPIVVAGAMRNSSELGYDGPSNLAAAVCTAISPQSRCKGVLVVMNNEVNAASEVTKTNTLSLDTFKSLEFGPLGIVDNDQVIYHRNMVSRQFIETDEVNDQVDLIKCVAGMDDRFLKFSVDSGAKGIILEAMGRGNIPPAMIPGVEYAIKNNVAVVMISRCPTGRVLDTYGYEGAGRHLRNIGVILGGSLPGQKARIKLMLALTVSADLLALRELIESDQYR
>NC_009633.1|WP_012063338.1|2287324_2287936_+|lactate-utilization-protein
MKETVEVILGNLKKRNIDAQYFVTKEEAHAAILNEIQLTDTVGIGGSMTIKELNLHEALIERGNSVFWHWLVAPEDRESQRKSAALADVYLSSTNAITKDGELINIDGLGNRVSAMVYGPKKSIVVCGVNKICDDLISGIDRIKTEACPSNAKRLGLKTPCAKTDHCNDCFSEDRMCNVTTIINNKPMGIDLKVYLVEETLGY
>NC_009633.1|WP_012063339.1|2288155_2289313_+|cysteine-desulfurase
MEVYLDNAATTKPNSEVVESMMTALTEYYGNPSSLHKKGVQVEKEIKRIRKSIGKAMKCSDQEVYFTASGTEANNLAIRGLVKANRRRGNHLITTTIEHKSVLNTFKDLAKDGYVVTYLNVDKQGFISLDELEKALTPDTILVSLIHINNEVGSMHPVKEIGKLIKAKNKNTLFHIDAVQSFGKEKINLNVDLIDSLSMSGHKIHGPKGIGALYVRKGVKIAPLFTGGSQEMGLRSGTENVPGIFGLGKAIELILDNQEDKIKRLIELKNYFIHSLSQQIDDVYITSKNGDDFAPHIINVSFKGIRSEIMLHSLEQDGIYVSSGSACSSKKRGASHVLVAMGMKEALIDSAIRISLSHINTIEEIDYAILHMAKHTKDLRKIIKR
>NC_009633.1|WP_012063340.1|2289320_2290499_+|tRNA-4-thiouridine(8)-synthase-ThiI
MENVLIIRYGEIMLKGDNKSFFEAKLTKHIRGAVKDLGDVKVYKMHSRVYIDVEDFNADEIIERVKKVFGVVCISPAVRFPVDFDVIKETALNQIKEEMAQRGVKTFKVESKRVDKKFPLKSPEMSREIGGYILENTEGLEVDVHNPEVRVYVEVRECSFVFTKKVYGFGGLPLGTNGKALLLLSGGIDSPVAGWLVAKRGVEIHGMHFHSYPFTSERAKEKVVDLAKILTTYCGRIKLYSVNLLAIQKEINEKCPEEEMTILSRRFMMKIAERVANKIGCDALVTGESIGQVASQTVKGLHVTNAAVELPVFRPLIAMDKVDIMDLARKIDTYETSILPFEDCCTVFLPKRPVTQPRLEKILRSEALLDVEGLIESAIGDMEVERISLDDE
>NC_009633.1|WP_012063341.1|2290519_2290999_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MDKFTHFNEEGRATMVEVGNKLNTKREAIAKGSIYMQPETLSKIIDKNISKGDVLAVSQVAGIMAAKKTSEMIPMCHTLMLTGADINFQIDETNSKIDIEAIVRTTGKTGVEIEALNAVSIAALTIYDMCKAVDRGMRITDIRLAKKSGGKSGDFIRED

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Crispr_ID: NC_009633_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_10

4090088-4090179

Orphan

Consensus_repeat	Method
AGAAGTATGATTTTTAGACTCCT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_009633_10

>merge|NC_009633|10|4090088-4090179|CRISPRCasFinder
AGAAGTATGATTTTTAGACTCCTTGAATTCTATTTTATGGACTTCTTGAATTCTATTTTTCATACTTCCAGAAGTATGATTTTTAGACTTCT

>NC_009633|10|10|4090088-4090179|CRISPRCasFinder
AGAAGTATGATTTTTAGACTCCT	TGAATTCTATTTTATGGACTTCTTGAATTCTATTTTTCATACTTCC
AGAAGTATGATTTTTAGACTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_012065027.1\|4091531_4092320_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_009633.1\|WP_012065015.1\|4077228_4077468_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065020.1\|4083529_4084306_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065022.1\|4085343_4086234_-\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NC_009633.1\|WP_012065036.1\|4099150_4099828_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065018.1\|4081842_4082256_-\|PrgI-family-protein	unknown	unknown	gnl\|CDD\|378907
NC_009633.1\|WP_012065016.1\|4077497_4078811_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_009633.1\|WP_012065031.1\|4096054_4096213_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065026.1\|4090585_4091545_-\|nuclease	unknown	unknown	gnl\|CDD\|319265
NC_009633.1\|WP_012065030.1\|4094015_4095926_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NC_009633.1\|WP_012065017.1\|4078892_4079423_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_157047313.1\|4086485_4086740_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_157047314.1\|4097535_4099137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379536
NC_009633.1\|WP_012065021.1\|4084308_4085145_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065019.1\|4082268_4083138_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065033.1\|4096842_4097322_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|375849
NC_009633.1\|WP_012065024.1\|4089065_4089563_-\|PcfB-family-protein	unknown	unknown	gnl\|CDD\|378920
NC_009633.1\|WP_012065029.1\|4092842_4093907_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NC_009633.1\|WP_012065037.1\|4099843_4100068_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_009633.1\|WP_012065032.1\|4096289_4096628_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_012065027.1\|4091531_4092320_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.25017e-73
NC_009633.1\|WP_157047314.1\|4097535_4099137_-\|hypothetical-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.52319e-11
NC_009633.1\|WP_012065022.1\|4085343_4086234_-\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	1.57464e-11
NC_009633.1\|WP_012065016.1\|4077497_4078811_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	1.15195e-32
NC_009633.1\|WP_012065029.1\|4092842_4093907_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	1.22463e-120
NC_009633.1\|WP_012065030.1\|4094015_4095926_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_009633.1\|WP_012065018.1\|4081842_4082256_-\|PrgI-family-protein	gnl\|CDD\|378907	pfam12666, PrgI, PrgI family protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 116 and 146 amino acids in length. This protein is found in an operon that is part of a Type IV secretion system.	3.55131e-32
NC_009633.1\|WP_012065033.1\|4096842_4097322_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|375849	pfam18423, zf_CopZ, Zinc binding domain. This is N-terminal domain containing a mononuclear metal center for zinc binding found in copper chaperone CopZ proteins.	7.84168e-20
NC_009633.1\|WP_012065024.1\|4089065_4089563_-\|PcfB-family-protein	gnl\|CDD\|378920	pfam12687, DUF3801, Protein of unknown function (DUF3801). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.	2.77375e-24
NC_009633.1\|WP_012065026.1\|4090585_4091545_-\|nuclease	gnl\|CDD\|319265	cd16408, ParB_N_like, ParB N-terminal, parA -binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	8.02815e-46
NC_009633.1\|WP_012065037.1\|4099843_4100068_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	8.95875e-09
NC_009633.1\|WP_012065032.1\|4096289_4096628_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.01149e-22

>NC_009633.1|WP_012065024.1|4089065_4089563_-|PcfB-family-protein
MQEQVTEKTIALQVSAAKFTATELKKLIEHYLRHRKQVKINKKGIKTVKPVGKTTLEKLSKKHDGLKNIEINENNIRDFEKVAKKYKLEYALKKDDQSNPPTYFVFFKGKDLDVIDFAFKEYLKSSLEKTKEAKPSLKAKLKEMVEKAKKLNKDKAKKPQKEQSL
>NC_009633.1|WP_157047313.1|4086485_4086740_-|hypothetical-protein
MTVFFIILNIVINLIPISVLNDFLISSGTTLEELQLVMGYDSRTLFITMLQFLFAPVLIMALLMYLVIEIKEYIVSRIDDNNIV
>NC_009633.1|WP_012065022.1|4085343_4086234_-|DUF2971-domain-containing-protein
MILYKYRADSEFTRKIFIDCKVWLSSPLQLNDPFECSIQKIVAESVNKNVKKDKENQISGFIMAYTMTPANGEMYGLPKNKIKDILDKIGQERKFGKKYKVYKDFIDSTTGNAPSNPMTKYENIKDQINNIGIFSLSERIDSGLMWGHYADGARGIAIGFSVDPNTMLSNENHCLKVMYSNDDNVLNERLETSLLLGLENDSFKFYQKISWNDPFFKSVISSKAEDWRYECEWRYVEETSGLYELPAPIKEIVFGSKCPDEIRKEYIKLVKEHIGEHVEFYEMKTEGKQFVKVRFQ
>NC_009633.1|WP_012065021.1|4084308_4085145_-|hypothetical-protein
MEKWKEARISYIDFIKDNCIFESKLINFMYPLNFENAYKKHLNSRCIKYINGINTNIEDLLLIYYKINTFYKNLKDNNIAEYKYVLKTEIEHFIMRYRIVSSKILELRKELKNKNIAWSTIKYFTDSEEYKQLISIRNDIAHESIRSHVFYGKDVKREAVQFYTNRSLDNNIYLDKVFLSPEGAEIYDLNRLLTWLIVILLNLGYDTFTDIILDIEKLNLVDKKERSYIDNYDEQIGKKYSLLTKRRVETDILIYNLSSLLAYIRDFNPNDISCYWRD
>NC_009633.1|WP_012065020.1|4083529_4084306_-|hypothetical-protein
MNCFKDHIDVMLGNIFNETQIYRPTYPLNFVHSISQNDELWEKDISGSVEKEIRYLFYIYYKIHSIYEIYKCDDCFLYSRLIACEFEYFLLRVPVIFDILEKHFLESLDSTLDNLNMVIPLYNELSLIKKLRNEIVHHSAKISVLSTGNSLVFKYCLHRNKTTEFLPSTIFKDENTLGYYKLSEYSTMILCLILNYLNEFFTKSEKIRNDGKELSKKIIDEVVYFDKTTDYPYSRINIFYGELSIFRENLDGFRISCL
>NC_009633.1|WP_012065019.1|4082268_4083138_-|hypothetical-protein
MFGIFDKIEEFFNDLLIGIIEQNLTSLLVDVNDRVGTIAAEVGQTPQAWNGSIFTLIKSLSDTVIVPIAGLVMTGILCYELLSMLMEKNNLHEMDTWMFFRWMMKAFIAIYLVTNTFNIVMAVFDVGQHIVSSSAGVINMSTSIDISSTITSMVDGLELLSTAELAIIALETLLVKISILAISVIITVILYGRMIEIYLSCSIAAIPLATMANKEWGQIGSNYLRGLVALGIQGFFIMVCVGIYAVLVGSIAVTDNIHTTIFSILTYTVILCFALIKTSGLAKSVMNAH
>NC_009633.1|WP_012065018.1|4081842_4082256_-|PrgI-family-protein
MAFVSVPKDLNKVKTKVALNLTKRQLISFSIAAVIGFPVYWFTRGTIGNDLAVFLMIGCVLPFFFVAIFEKDGIVFEKYMGHIIRQKFIYPKVRLYKTQNFYAYLNHAEESEVKTREKQAGRKTRATAFKKSKNVKK
>NC_009633.1|WP_012065017.1|4078892_4079423_-|hypothetical-protein
MTDKKKLQEKFRKRLYKPEDANKSEIIKERDLQANEESSDPQDSVSLSDEKVTRLDAVPKRRIDDRQNYKKTDQKIKQKKKFSTEGRYKQKQHSIKRTLQNKRKPSKLKKYENKASQKVDQRTSNSKGTAGVMDKDKVKTQFGSEKRTLNKHKTQKAHEFNKKKLHQKAMGVPYAI
>NC_009633.1|WP_012065016.1|4077497_4078811_-|M23-family-metallopeptidase
MTIVRRTLTNTKKSKQPKLKFEASKDKLNVESKPEALRQRLSYVKQKRFNDNVKQNKKNQQKRSIKKAYSKERHSTFNTGIKERIKNAVKQVKVWLTKGLKKFAIYMIGPIFMFVVFSVMILSVVQSFSGAVSTVVATSYQSSDLVVTNADVMYTRLEADLLYAINRVEEDHSSYDEYRYYVDAVGHDPHMVIAYLTAKFGEFTDADASNELSRIFDLQYDYRLIEKIEVRYRTVTHVSVNPETRETTTTTSQEAYDWYVLEVRLDTSDLEVIFTSRLNDDEKDLYETLIAIKGNFISFPSPIKEEWQNAISSPFGYRLDPMSKEVTFHGGIDIAKPTGTELVAIIDGKVIKTGYEADGYGHYIIIEAEKSKQTVLYAHCNSIVASEGDEVKKGQTIATIGSSGKSTGPHLHLEIRDSSGNKLNPYFYLSSEIVQED
>NC_009633.1|WP_012065015.1|4077228_4077468_-|hypothetical-protein
MDKRLEKTLKEEVKLKEQMKVLQDRLNDVEEKREVYEKETLYKTFKETEISLEEYQMIIKNAVNDYMGLNDVIGGKENE
>NC_009633.1|WP_012065026.1|4090585_4091545_-|nuclease
MKKDSPRRKIVDAIDFLTDGRPEQQIAEIDMANIVEFFDHPFHLYEGKRLEDMIESIKKNGILNPVIVRTVSPGKYEMLAGHNRMNARSLAGLDKIPAFIKENLSDEDAYIYVIETNLMQRSFSDLYPSEKAVVLEMQYEKVASQGKRTDIISELKALENGELLEPEEGETDSRGRLAKEYGLSGRTIARLLRINHLTEAWKLEVDNDATSLMAGVELSYIPEQLQKHLYKECKDMAIKISFKDAKMLKEMHQSGSLNENEISKFLISKEKGKVIKKDYQSIKVSTEIISKYFDESSSKKEMESIIELALQHYFVGQKG
>NC_009633.1|WP_012065027.1|4091531_4092320_-|ParA-family-protein
MAEIIAIANQKGGVAKTTTSLNLAYSLMKLGKKVLMIDFDGQANLTTCFGIEEPNSIETNIAHLMIAKMNEEDIPDKSQYIVSNNGIDLIPSSIYLSVVDANLRLEMGSERILFEILEPLKADYDFIIIDTSPSLGSLTINALSAADSVIITVNPQLLAMMGLQDFLKTTKKIQKRINSKLEIKGILLTMCDSRTNLSKVLSEQMSEAYDGVVNIFETHIPMTVKVGEAIYYSKSIAEYSPTSKAGIAYADFAKEILTYEER
>NC_009633.1|WP_012065029.1|4092842_4093907_-|ACR3-family-arsenite-efflux-transporter
MSDVKETKTIGFFEKYLTIWVAVCIVLGVAIGQLIPSVPATLSKLEYASVSIPIAILIWMMIYPMMLKIDFSSIIGALKMPKGLIVTCGTNWLIKPFTMFFFSWLFLKVIFASFIPEALATEYIAGAVLLGAAPCTAMVFVWSHLTKGDPAYTLVQVAVNNLILLVAYAPIVMFLLGISNVTVPYDTLILSIVLFIVVPLVGGYLSRIYIIKSKGMDYFENVFLKKFNSITIIGLLLTLITLFSFQGDVILNNPIHIVLIAVPLIIQTFFIFFLAYGWSKAWKLPHNVSSPAGMIGASNFFELSVAVAISLFGLTSGAALATVVGVLVEVPVMLALVKISNNTRHWFPQVVREN
>NC_009633.1|WP_012065030.1|4094015_4095926_-|cation-translocating-P-type-ATPase
MNTNKDEKNNSSIREFLVFAIAPLIVGLAIIVSWLLSRYNFGPDLLYMGIALFAVLFGGLQRFISGFKDVFNRRITVNVFVTVALIATVAIGEFITAAILIFIMSAAGAFESYTLDKTRKSIRGLLDLAPKKVTIKKNDEEVVIGIEEVKIGDLVIVRPGERIAVDGVVTNGQSSVNQAPITGESIPVEKNKGSQVFSGTLNEEGRIEIETTGVGEDTTLAKIIHLTEKAQATRPPFQNIADRFTHWFLPVVVLIAIGAYLASGDIRTAVAVLLVACPCAFAIATPTAITAGISNMAHRGILVKGGKYIEQAGSIDTLLVDKTGTFTIGSPVVMGVEEFNGATKEEILLWSAIAEKYSEHPLARAIIKHAKENDVKIPDPEDFKAVVGKGVIAQFEGQSLVVGKEELLTEMDIDLGENVKEQMKDHREKGRTIMLVARNNKVMGLVSIADKVRPGVKEVILQLKEIGIKEIIMLTGDNAATAQSVAAEIGVDSFKANMLPEQKQEVVAEMQKAGKKVAMIGDGINDAPALALADIGIAMGATGTDVAIETADVSLMRDDLRSVADFIWTSKKVFRRIKLNIFFSIIYNVIGLILAAMGMLSPVGAIIIQEAGCLTVVISSTLLLWYKLKLPEVKVG
>NC_009633.1|WP_012065031.1|4096054_4096213_-|hypothetical-protein
MTNNKKKTGFFGLIKESLKQTGGCCGPGESCGPSCEPPKKEDKEEKKNDQKK
>NC_009633.1|WP_012065032.1|4096289_4096628_-|winged-helix-turn-helix-transcriptional-regulator
METTDIFKMLTDETRIRILNVLRENQLCVCEVQAVLGISQTNASKHLNKLKTAGLITDEKKSQWAYYYLNDSFWTKNKYLYEYLKEQWETKDCYLTDKENLKEYIRKNIDCT
>NC_009633.1|WP_012065033.1|4096842_4097322_-|(2Fe-2S)-binding-protein
MAINNECCCGGKKERLNQIKEKCPVCSNEGIAVSKVTVEHLVADNYRNVIDGGQYKICINEDCDVVYYSLDNEIKFLKDQIRVPIWFKKDAEPKYACYCSGVTEDQIIEAVVKYGVKTVKEVNMITGAMKNSNCKEKNPLGICCHKTVQQAIYRGLAMK
>NC_009633.1|WP_157047314.1|4097535_4099137_-|hypothetical-protein
MELNSMKALSYEELRALYKKFLHSQDISKATINTAYVDTFYLWRKGSKELFWSAVTATDFENEARNALIKGLSENSTGNVNSLVSGYMSHLRRFRLFLSSDEIIAPVEYKQQITVKPKPASREIIINKMYVGGYLSEGDNIGHEIINLYKADDGKNYIYLNSQGTIELSRGENSITVLLVRKFASKIYKVLAKAEGIMILDFADSKLPRKQRYKGQVALGLTYGGVSLVDLFNENSYRGSLEEEKNAYTTFVADRVIKPKNQIYITDDESVSGDNTFFIRTNKGFGKQTLREFYSENEKPESFTDLNQIIENKELWEEANTTQAISELPEPQKDPYFNFLKIIRQEDNELAFSNMFAYFFDINRDAFSRFAQEVLSVDIQTDFTIEREKKNIDLLISDKNNAVVIENKIKSSINGINERHDIYSNQVQSQLKKYYQFVTTDDEYCKKTVSCFIFSPNYNRIDLSKFSCGEKYTVVYYREIYNFFVENRNCFDEVPYFEDFINAMHKHTKDYDNELEEEMQRRFQNTIYKAKKR
>NC_009633.1|WP_012065036.1|4099150_4099828_-|hypothetical-protein
MMISPESYYEEYLKGKTKEQIMTAIRGLKQEIGRLKNSMENPHGGIKTVMHPSEDTRLHWTREYLEKAKEAYVEAGGIYTLSKSEEKTADFDANMESISKITFSIGGYFGGYRNYIVELTDEFKAYTKLWEDKEPLLLCDDSQEPFTKDTFIAALKDLHIGEWRRRYSTKRFGYMVLDGTQWELEFEYNNGHKPVKFDGDNSYPYNFDKFQMLFGIDVTEEDEDE
>NC_009633.1|WP_012065037.1|4099843_4100068_-|helix-turn-helix-transcriptional-regulator
MTTADMIKQLCEQMNISVAELARRIGQTPQNFNKKLKRETVTLNELKTIADVLDIKFEQAFILPDGNEIKIGNE

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Crispr_ID: NC_009633_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009633_11

4772511-4772627

Orphan

Consensus_repeat	Method
AAAATTTCAAGTGCTTAAACAGAATTCGTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009633_11

>merge|NC_009633|11|4772511-4772627|CRISPRCasFinder
AAAATTTCAAGTGCTTAAACAGAATTCGTCTTATGCTATCGCAACCACTCATGGCGCACTTATATTTTTAACCGGCGTTGTTCAAAATTTCAAGTGCTTAAACTGAATTCGTCTTAT

>NC_009633|11|11|4772511-4772627|CRISPRCasFinder
AAAATTTCAAGTGCTTAAACAGAATTCGTCTTAT	GCTATCGCAACCACTCATGGCGCACTTATATTTTTAACCGGCGTTGTTC
AAAATTTCAAGTGCTTAAACTGAATTCGTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009633.1\|WP_012065599.1\|4759247_4760252_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065603.1\|4763283_4765221_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NC_009633.1\|WP_012065605.1\|4767039_4769004_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239167
NC_009633.1\|WP_012065613.1\|4776613_4778053_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NC_009633.1\|WP_083761074.1\|4765352_4766798_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349874
NC_009633.1\|WP_012065609.1\|4773370_4774762_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240542
NC_009633.1\|WP_012065616.1\|4783654_4785388_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_009633.1\|WP_157047339.1\|4769332_4769563_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065614.1\|4778119_4779340_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NC_009633.1\|WP_012065610.1\|4775121_4775757_+\|energy-coupled-thiamine-transporter-ThiT	unknown	unknown	gnl\|CDD\|370542
NC_009633.1\|WP_012065606.1\|4769709_4771692_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NC_009633.1\|WP_012065601.1\|4760987_4761212_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340762
NC_009633.1\|WP_012065612.1\|4776326_4776557_-\|hypothetical-protein	unknown	unknown	unknown
NC_009633.1\|WP_012065608.1\|4772748_4773249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NC_009633.1\|WP_012065607.1\|4771919_4772408_-\|dUTPase	unknown	unknown	gnl\|CDD\|370103
NC_009633.1\|WP_012065600.1\|4760263_4760881_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277317
NC_009633.1\|WP_012065611.1\|4775906_4776281_+\|iron-binding-protein	unknown	unknown	gnl\|CDD\|376641
NC_009633.1\|WP_041721986.1\|4785644_4786448_-\|DUF2935-domain-containing-protein	unknown	unknown	gnl\|CDD\|378573
NC_009633.1\|WP_012065615.1\|4779715_4783231_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_009633.1\|WP_012065602.1\|4761293_4763105_-\|aldehyde-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|225277

Protein	Function_ID	Function_description	E-value
NC_009633.1\|WP_012065603.1\|4763283_4765221_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.73382e-157
NC_009633.1\|WP_012065605.1\|4767039_4769004_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239167	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_009633.1\|WP_012065613.1\|4776613_4778053_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	0
NC_009633.1\|WP_083761074.1\|4765352_4766798_-\|M28-family-peptidase	gnl\|CDD\|349874	cd03877, M28_like, M28 Zn-peptidase, many containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	8.25884e-29
NC_009633.1\|WP_012065609.1\|4773370_4774762_-\|MATE-family-efflux-transporter	gnl\|CDD\|240542	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	5.60243e-116
NC_009633.1\|WP_012065616.1\|4783654_4785388_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_009633.1\|WP_012065614.1\|4778119_4779340_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.8304e-64
NC_009633.1\|WP_012065610.1\|4775121_4775757_+\|energy-coupled-thiamine-transporter-ThiT	gnl\|CDD\|370542	pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ). Members of this protein family have been assigned as thiamine transporters by a phylogenetic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.	6.12106e-50
NC_009633.1\|WP_012065606.1\|4769709_4771692_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_009633.1\|WP_012065601.1\|4760987_4761212_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340762	cd17505, Ubl_SAMP1_like, ubiquitin-like (Ubl) domain found in small archaeal modifier protein 1 (SAMP1). Ubiquitin-like small archaeal modifier protein 1 (SAMP1) shows a beta-grasp fold of Ub, suggesting that this archaeal Ubl molecule is more closely related to eukaryotic Ub and Ubls than to its prokaryotic counterpart. Several Ub-like structural features such as an N-terminal single lysine residue and di-glycine motif at the C-terminus, spatially isolated, implicate formation of a poly-SAMPylated chainpoly-SAMPylation. SAMP1 can form covalent conjugates with its protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. It is involved in sulfur transfer during molybdenum cofactor biosynthesis much like MoaD. This family also includes proteins such as Thermoplasma acidophilum TA0895 and others, all closely related to proteins MoaD.	1.14292e-08
NC_009633.1\|WP_012065608.1\|4772748_4773249_-\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	8.12791e-94
NC_009633.1\|WP_012065607.1\|4771919_4772408_-\|dUTPase	gnl\|CDD\|370103	pfam08761, dUTPase_2, dUTPase. 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyzes the hydrolysis of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologs of dUTPase including dCTPase of phage T4.	1.17462e-51
NC_009633.1\|WP_012065600.1\|4760263_4760881_-\|metallophosphoesterase	gnl\|CDD\|277317	cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.34806e-05
NC_009633.1\|WP_012065611.1\|4775906_4776281_+\|iron-binding-protein	gnl\|CDD\|376641	pfam01880, Desulfoferrodox, Desulfoferrodoxin. Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulforedoxin from Desulfovibrio gigas and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centers, this novel protein is named desulfoferrodoxin.	1.55244e-41
NC_009633.1\|WP_041721986.1\|4785644_4786448_-\|DUF2935-domain-containing-protein	gnl\|CDD\|378573	pfam11155, DUF2935, Domain of unknown function (DUF2935). This family of proteins with unknown function appears to be restricted to Firmicutes. The structure of this protein has been solved and each domain is composed of four alpha helices. A metal cluster composed of iron and magnesium lies between the two domains.	2.87974e-35
NC_009633.1\|WP_012065615.1\|4779715_4783231_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_009633.1\|WP_012065602.1\|4761293_4763105_-\|aldehyde-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|225277	COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy production and conversion].	0

>NC_009633.1|WP_012065607.1|4771919_4772408_-|dUTPase
MEFSVLYEIQRNLDEKIIVEHQLQGVNLTPSKVLALQVELGELANETRAFKYWSKNPPASRNVILEEYVDCLHFILSLGLDIGFTGTKIQDGVSGEQTLVEQIKTVFNQIHQFESTLGEAEYWILFEGFLVLGKKLGFESGQIYDAYLAKNKINHQRQAEGY
>NC_009633.1|WP_012065606.1|4769709_4771692_-|transketolase
MKQIEQKAINTIRLLAVDGVEKANSGHPGLPMGAAPMAYTLWSQFLNHSPNDPQWTNRDRFVLSAGHGSMLIYSLLHLFNYGLTIEDLQNFRQWGSKTPGHPEFGHTVGIETTTGPLGQGLTNAVGMAMAERRLAAEFNRDQYDVVDHYTYVIAGDGDMMEGITSEAASLAGHLGLHKLICLYDDNNISIDGNTSLTFTEDVAKRYEAYGWQVVIVKDGNDVAEITKAIKAAKENKEQPTLIKVKTTIGFGSPNKQGTAGVHGAPLGKDEIQLTRKTLEWAHDEDFFVPEDVKGHFDGLVKDSNEKAKVWEEMFKGYSEAHPELAKAWKQWHSRELPQELLKDASLWEFSEKPMATRSTSGEVMNRLKKHLPNLMGGSADLNPSTKTYLKEMGDFQKGEWKGNNIYFGVREHAMAGITNGMALHGGLRVFCSTFFVFSDYMKPAIRLSALMKQPVVYVFTHDSIGVGEDGPTHQPIEHLLMLRSIPNVQVLRPADGKETTAAWIQALKHQEGPTVLVLSRQNLAQLEGSGQDAAKGAYVVSKGKKETPDMILMASGSEVPLAIEAQKALQDKGIEANVVSMMSWELFKNQSKEYQEEILPKQVTKRISIETGVTLGWSQFIGDAGIAIGIDDFGASAPGEVLMDKYGFTVENIVEKAMTL
>NC_009633.1|WP_157047339.1|4769332_4769563_-|hypothetical-protein
MRQIVALLKTMAYQTPLEPQSVYLPKRRIMGIRSPQSLVISKNMAYMVCPDPKFCPMMVASAVPMPMVKAAKVPSP
>NC_009633.1|WP_012065605.1|4767039_4769004_+|molybdopterin-dependent-oxidoreductase
MKKVQTACPLDCWDCCAIEVTTNEGEIINVQGDKHHPITKGFLCEKGLKHLERLSSTKRLNTPMKKTDGQWHSISWEKAIAEIGDKLLEIKRKCGSTALIHYSEGGHGGLSKNIDTAFFNAYGGVTSPMGSLCWGAGIAAQTLDFGKVLSHDPEDLLNAQTIIVWGRNPAYTNIHLLPFLKKAQKKGTQLVVIDPIKTATAKMADHYYSVKPESDGFLALAMAKIMIENNWINVDFITQYCDGFEDFHGYLQNLDLNMLVEKTGLSIDSVQSLATLYACHGPSAIILGYGLQRYTHGGKNIRLIDALGALSGNIGIPGGGVSYANQYVSQWLDHDYLRNEQNHSVPSFKKGLFSQYVLQDRHESLEGIFITKANPVVQLPNTSDTIKAFDSIPFKVTIDHFMTDTAQLSDYVLPCTHIFEEEDFLHSSMWHPYFHYTERVVPPQNGVKSEFEIFKLLAEYMNMTDYLDQYGCQRTYLEKGLRPLLKKFNSTLDDIQGKRLKLTGNEIPWQDKIFYTSNKKFNLFCLQVSELPFTENFNTEYPLQLLSVHPKHSLHTQHYIDTDNLMLPKVYCHPNTLNQWHVHDGDRVKVISPTGELHVRIVLDSDVSPNLLLIYEGWWLTHGGVNHLTPLGVSDIGDQATYNNCFCKIPPISL
>NC_009633.1|WP_083761074.1|4765352_4766798_-|M28-family-peptidase
MRRRKKMRKQSVVLSLFLSMIIILGGGQMIIVQGDGAQLGNSMREDMNSSVMAMVVVDEEIPIEEDVKPWVEQWHDQRMESYGVLLEGVLTLTSDEHRGRLPGTEGNHLTVEYIEKYFKEIGLQPHDQVSYLQGFQQMIYHPDEQALALRIHFKDGTTREAELGMDYTEQSRVMREVEMTAPITFNIKDEDIKEKVIILDGPEEIQHVYDQAQAVLIKRKVLGNSLRVWDKIMDNGEARPAPFMFQISQELFETLQAENVESVSLYSKLVGEEKTIYNVAGRIPGKDSNKVVVISAHIDHLGWAGEKIFRGVVDNAAGVAVMMDLVQRLHHQSIEEPFQMDIIFVGFNSKKSEMLGSNAYIKQIKDKYDKIYNINIDCVGRKTGGPIIISGGEEINQALKKNITKYLAIYGINVEGQRGFDSDHLSFNKEEIRGVTLGQRDVLTVTHNPEDIVALLDFDYIKGVSLSIYDFIVAEGYKSFD
>NC_009633.1|WP_012065603.1|4763283_4765221_-|sigma-54-dependent-Fis-family-transcriptional-regulator
METKDYVKRSHQRSIDFGVEYNRMYSSKILKGNELQIKLEANRELLTTAKSFMEELYNFVEGSGFFAILTDQEGCILEVLGDDKVLAVSHGLEMIPGAYMDEEHIGTNAMGTALAEGIPVQISGEEHFVKAYHRWTCSAAPIRNSIGEAIGTLNLTGYSEYVHSHTLGMVAAAANAIAYMLESKEVNNKLFLAKKSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGMEGIKLIEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCMIREIKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSIHNHSERRDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGEMPLDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGNIRELENVIENLMNSGELNFLERVELSSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAKYKIDCSKMTRCSEVEHENAGGMF
>NC_009633.1|WP_012065602.1|4761293_4763105_-|aldehyde-ferredoxin-oxidoreductase-family-protein
MYGYTGTILRINLKDKTVKKEALDLDLAKKFIGGRGLGEKILMDEIDPNIDALSPENKLIVVTGPLSGTPTPTGGRYMVVTKSPLTGTAASSNSGGRWGAELKFAGYDLIIVEDKSETPVYINIQDDVVTIKDAGHLWGKVVSQTTKMLNEELGDKVKVLTIGPGGEKLSRLAAIMNDLDRAAGRSGVGAVMGSKNLKAITVRGTNKVAIHDPAKLKEVVSRVNKQIRENGVTGQGLPTYGTAVLVNILNENGVFPTNNFQESVFAKAEDISGETLSDKYLVKRTGCYGCPIACGRHCKVDDLESGGPEYETIWGFGADCGISDLGAIIKANYWCNEMGIDTISTATTIAAAMELYQKGLIKDEELGGLSLEFGNADSIIEWTKRMGLREGLGDKMTDGSYRLCESYGAPEVSMSVKKQELPAYDPRGIQGQGLAYATSNRGGCHVRAYLISPEILGMPEKLDRFALEGKAQWVKIFQDLTAVIDSMGLCLFTSFATSLQDYTDLYNAVTGETHTADTLLAAGERIWNTEKLFNLSAGITPAEDTLPERLLKDAIPGGPSAGNVAQLDKLLPEYYAVRGWDTEGIPTEARLEQLQIGLGTTTA
>NC_009633.1|WP_012065601.1|4760987_4761212_-|MoaD/ThiS-family-protein
MEVKVRLFATLRDGRGKELMLDLPGEVTPERIINELDIPQKEIAILLINGRDGTFSTILKEEDTVSLFPPVGGG
>NC_009633.1|WP_012065600.1|4760263_4760881_-|metallophosphoesterase
MKNIIKKWMYLLLDKPLIPEELMEAKGPLLLHISDTPMEVYSFIYKLVNLINPQYIVHTGDIVDNIKLENFKNRLADYQTNLEKFVDKIEKIHRGEIYYVIGNHDKMKSVQGVTKKGTILYEGKINIEGKTFYLRHNYRRVETKADYYLYGHRFEPKHKKIRSQQLLNGILNINVIDLSTGLIYQIDYPMATNQFRKMERGRIGF
>NC_009633.1|WP_012065599.1|4759247_4760252_-|hypothetical-protein
MLYLRMGPRFLFIRTERIQKVKDFFLQEGQGIHTTFQEGLEQSTEDSTLIFITEKHHEKTSIEDAKEIILVNEVASACLAGMINHHVSQWVFRVDMGPASMVMRVAGDEQKIIQRIQEVYGGKLVDWEEGVKQGEKGDTILSLTKNPISGRLSSKDFINANLLLAHPVSFIHKKLRNEGLLFITQSLENSEWYDLQINIYDSWGNYKGHHDRLIFILSQLEIGMILGETWTKDHALILYSVIAFQVRLFTTYSPQEIKKLTMALEYDQNGERQVDFDLYYRNKKISWVDIDKRKGRRNKLEECKQYREELFLKLSEETQNTLIRMEKEIKATHS
>NC_009633.1|WP_012065608.1|4772748_4773249_-|hypothetical-protein
MSLYNEWKSMAYDIPNDQMAVQFWNEYCDLEKGIYITVLEEGTGKVEGKINDLAKKFKVKTVDFVGFLDGINDSLVTNLDLDEITEETEVAVDVDFEKLYFNMLSAKADWLYTLDQWADILTEEKRKEIKKEYNISRTVVKEDKIGRNEPCPCGSGKKYKKCCGNE
>NC_009633.1|WP_012065609.1|4773370_4774762_-|MATE-family-efflux-transporter
MATSLQIPSKIEVRRKILSMILPITMENVLQMSAGFVTMAMIGRISAVAVAAVGISMRITQIIWALFRGVTTGATVFVAQSYGSGNLIKLKKVIQQTLLSSIILVLILQQLLFWFAPQILNFFKGDPTLIESGIMYLRTLSWGLPFVAVIQVVAGVLQGMGNAKTPMKIALIMNVINMILSYTFIFGPLGLPAMGLRGAAVALVVAQSVAALLGIYVLFNRHGILGTVFNRSFFKLDMKQVIQVYRVGSPTAVESIFWQVSSIALTMIILDFGEVSLAAYQLGLQAESISYMPAMGFSVASTAFIGQALGAKDPQLGKRYLKEIVTGSFLITIFSASVLIFFPAFIMRLLTDQQEIIDVGIKYLFFMGLVQIPQNMAGVLNGALRGAGFTRVPMIVAGTGLWLIRIPFSYILVQFFDVGITAIWIVMCFDLVFRFILSFTLYKRKNIYEQEPVIEKMTVKSEG
>NC_009633.1|WP_012065610.1|4775121_4775757_+|energy-coupled-thiamine-transporter-ThiT
MFQKLFELDPNVIRILLALFVFSIGGMLYFKKNQSFKFTTRMLVYGSLCIALSFVLSYIRLYRFPQGGSVTPASMLPLFIYAVAFGPIPGIIAGFALGMLKLIQDPFVIHWAQFFLDYPLAYGALGLAGLYRNNLAVSVLIGGFGRFFMSFLSGVLFFASYAPEGMNPIIYSIVVNGLVLGTDTLICVSFVFIPQIKSAVKHIHGSITLTK
>NC_009633.1|WP_012065611.1|4775906_4776281_+|iron-binding-protein
MKSFGQFLQTGDWKGEKHVPVIHAPEKVKAGEGFELKISIGDAIGHPNTLEHYIAWFKVFFHAEGAKFPVEIANFNFAAHGEGDNFTDPTGCTQVKLNKSGTFHAISYCNIHGLWENSQEITVE
>NC_009633.1|WP_012065612.1|4776326_4776557_-|hypothetical-protein
MYDKEPEINGEKYVTLTILKKRFNLLSLEIEAIRKQHNVPMVDWSYVKEGQVTGPNIRYYHMKAFEKAHEKHQKID
>NC_009633.1|WP_012065613.1|4776613_4778053_-|cardiolipin-synthase
MTWLNFFTTIYSLTIFILSVVIILDNRNPSRTLAWILVLIFLPGAGVFLYLYIGQNHRKKNTFIKKRKENYRILNHLLEEQVPITQYSGLFHQFFDDIRGKIIPLLLNNTYSPLTVNNEVKVLHNGEETFREMLQEIEGATHHIHMEYFIIKDSDIGRIFQKALIKKAEEGIEVRLIYDAVGSWKLKKDFLQPLKDAGVEAVAFLPVTIPFFGSRLNYRNHRKILIVDGQVGFVGGLNIGDEYLGKSEKMGFWRDVHLKIMGESVYVLQAIFLMDWYFVKKEEIDSLAYFPKQKDCGQRLIQVASSGPDSYWAAIQQTYFTALTGATKRAYIMSPYLIPDDSMLMALKTAALGGVDVRILLPGRPDHRTVFWASKSHFEELLEAGVQIYQYQKGFVHGKMILVDSVFTSIGTANIDIRSFQLNFEVNAFIYDEEVTDQLVEVFLEDLKDSKEVTLEEYHKRPLSHKAMESVTRLLSPIL
>NC_009633.1|WP_012065614.1|4778119_4779340_-|patatin-like-phospholipase-family-protein
MLGLTLEGGGAKGSYQIGAWKAFREMNIEFDGITGTSVGALNGALMLQDDFDLAYGIWHEMNPNTIMDIDDRIYEMLSNYQLTANNVHFMLEQVRKFIKGFGMDTKPLEQLIEANINEGKIRKASTDFGFVTVSLTDFKPLEIFKEEIPMGKMADYLMASSYLPIFKSKKLDGKTFLDGGFYNNLPINMLYEKGYRKIVAVRLLSKGRVKKVEHHDLDVLYIQPCENLGNMMDFSNERAQTNLNLGYFDTLRACKGLKGRKYYIEGFIDEITAMAFLMRWDEAVLKNLSQLFGLSASVPLNRLLLEEIIPRWIHLMDLSEKATYQEVAIAILENMAHYLKINRFEVYSLASFVEEIRKHKERMGETERPIHKNNLLSEELILKISKEKQLEASIKIMLENNGNIYI
>NC_009633.1|WP_012065615.1|4779715_4783231_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MARKMKTMDGNAAAAHVSYAFTDVAAIYPITPSSNMAENVDEWSSEGLKNIFGQTVQVTEMQSEAGAAGAVHGSLAAGALTTTFTASQGLLLMIPNMYKIAGELLPGVFHVSARALAGHALSIFGDHSDVMAVRQTGCALLASGSVQEVMDLGGVAHLAAIKGRMPFVHFFDGFRTSHEMQKIEVIEFDELEKLVDWNEIKAFRNRGLNPEHPELRGTAQNPDIFFQAKEASNPFYEVIPGIVNDYMKEITKLTGREYAPFNYYGAPDAENIIIAMGSVTETIEEVVDYLNEKGEKVGLIKVHLYRPFSAKYFFDVVPDSVKRISVLDRTKEPGSLGEPLYQDILTIFFGKENAPLIVGGRYGLGSKDTTPPQIKAVFDNLKAEKPRNAFTVGINDDVTHTSLPVEENVVTASKGTIRCKFWGLGSDGTVGANKSAIKIIGDNTDMYAQAYFSYDSKKSGGVTISHLRFGKQPIRSTYLIDQADFVACHNQSYVYQYDLLKGLKPGGIFLLNCIWSPEELDAKLPASIKRYIVENNINFYTLNATKIATEIGLGGRINMVMQSAFFKLAEVIPVEDATKYLKEAIVDAYGIKGEKIVNMNQEAVNQGVNALVKIDVPASWGSAQEEVAVAAEAPAFIENILRPINAQGGDDLPVSAFVGAEDGTFPLGTSAYEKRCIAVDVPEWQMEKCIQCNQCAYVCPHAAIRPFLVDEKEAAQAPEGFKTLKAMGKEFNGLQYRLQVSTLDCTGCGNCVDICPAPKGKAIEMKPVEPQVEAQKENWEYATTLTDKSELTNIGTVKGSQFAQPLFEFSGACAGCGETPYVKLITQLFGDRMMVANATGCSSIYGGSAPSVPYCKNVKGQGPAWANSLFEDNAEFGYGMFLGVKQIRDKVSDLMTEALSLDIAEELKDAFKAWLEGKDQAQPSKEATYNMLPLFDAAKGNPIIDEIIEKKDFLVKKSQWIFGGDGWAYDIGFGGLDHVIASGDDINILVMDTEVYSNTGGQSSKASPTAAIAKFAASGKKTKKKDLGMIAMSYGYVYVAQVAMGADKNQLIKAMKEAEAYDGPSVVIAYSPCIAHGIKAGMGKTQEQSKNAVEAGYWHLYRFNPELKEAGKNPFVLDSKAPTTPFRDFLLGEVRYSSLSKTFPETAEMLFEKSEKEAKERYETYKRLSEI
>NC_009633.1|WP_012065616.1|4783654_4785388_-|ABC-transporter-ATP-binding-protein
MIKRFIKYYKAHLPLFYLDFGCAFLMAGMDLVFPFVVRKMIDDVFPARDLRLILWIALGMVILYIVRSILQYIVDYWGHVLGVRIEHDMRKDLFHHINKQSFTYFDNTKTGHIMSRLVNDLHDLSELAHHGPEDLFIATITLVGSFIILLTINGPLALITFALVPIMMWFAINKNRRMQRAFKDMRLKVADINAQVEDSISGVRVVKSFNNEHYEEEKFQEGNVKFRVSREKAFQVMAEFFAGVNFFSNFTNLAVLIGGGIFIYQGQMTTGDLFAFLLYVSMFMQPIRRLTTLVENYQKGMAGFSRFVEVLELDPEIVDSENAKEMGRAEGRINFQHVTFSYNNQQNVLQDITMEVKTGETVAFVGPSGGGKTTLCSLIPRFYEVEQGSIQIDGVDIKEITQSSLRENIGIVQQDVFLFSGTVKENIAYGKQNPTDEEVMEAAKKANAHEFIMKLENGYDTYIGERGVKLSGGQKQRLSIARIFLKNPPILILDEATSALDNETEKIIQQSLFSLSENRTTLVIAHRLATIRNADRIMVLTDEGIAEEGSHEELLQQEGIYARLYKAQFDGFIPDVA
>NC_009633.1|WP_041721986.1|4785644_4786448_-|DUF2935-domain-containing-protein
MLPYENVALFEHQFWLQVLGDHARFILNALSPEEREEIQRAQYFIHIFDQLLEESRKSPRGSALSKLTDQAYGCAQEIRTFKLHLIKRHLVGKIEIGLPPTFLNHMVNEVEEYLRILCFLSMKQIPITQPIHYHMVWLLDAAGHSAGIMGDLDMVEKELIRKSGKFTQRFEEFYIKAVEIAGYTRTTLDQFPAFTRFNYQVEGELLLFKKFLRELEALELNQKVLGTLSALMLDHMAREECYYLTKLAQVTEVKEPKCDPTKARTEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009633_1	1.1\|391696\|55\|NC_009633\|CRISPRCasFinder	391696-391750	55	NC_009633.1	1787721-1787775	0	1.0
NC_009633_1	1.1\|391696\|55\|NC_009633\|CRISPRCasFinder	391696-391750	55	NC_009633.1	1787805-1787859	1	0.982
NC_009633_3	3.1\|556758\|37\|NC_009633\|CRISPRCasFinder	556758-556794	37	NC_009633.1	1139591-1139627	1	0.973
NC_009633_3	3.1\|556758\|37\|NC_009633\|CRISPRCasFinder	556758-556794	37	NC_009633.1	165572-165608	2	0.946

1. spacer 1.1|391696|55|NC_009633|CRISPRCasFinder matches to position: 1787721-1787775, mismatch: 0, identity: 1.0

aagcacttgtgatttttaacaaaggggcgttaaaaatagagtgcgctatgagtcg	CRISPR spacer
aagcacttgtgatttttaacaaaggggcgttaaaaatagagtgcgctatgagtcg	Protospacer
*******************************************************

2. spacer 1.1|391696|55|NC_009633|CRISPRCasFinder matches to position: 1787805-1787859, mismatch: 1, identity: 0.982

aagcacttgtgatttttaacaaaggggcgttaaaaatagagtgcgctatgagtcg	CRISPR spacer
aagcacttgcgatttttaacaaaggggcgttaaaaatagagtgcgctatgagtcg	Protospacer
*********.*********************************************

3. spacer 3.1|556758|37|NC_009633|CRISPRCasFinder matches to position: 1139591-1139627, mismatch: 1, identity: 0.973

tttaagcacttgaaattttaaacaaagcccgttttaa	CRISPR spacer
tttaagtacttgaaattttaaacaaagcccgttttaa	Protospacer
******.******************************

4. spacer 3.1|556758|37|NC_009633|CRISPRCasFinder matches to position: 165572-165608, mismatch: 2, identity: 0.946

tttaagcacttgaaattttaaacaaagcccgttttaa	CRISPR spacer
tttaagcacttgaaatttttaacaaagcccgtttaaa	Protospacer
******************* ************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009633_8	8.3\|1762876\|35\|NC_009633\|PILER-CR	1762876-1762910	35	NZ_CP031197	Staphylococcus saprophyticus strain 1A plasmid unnamed1	4784-4818	8	0.771
NC_009633_8	8.3\|1762876\|35\|NC_009633\|PILER-CR	1762876-1762910	35	KY653120	Staphylococcus phage IME1348_01, complete genome	6066-6100	8	0.771
NC_009633_8	8.14\|1763619\|34\|NC_009633\|PILER-CR	1763619-1763652	34	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	19561-19594	8	0.765
NC_009633_8	8.20\|1762873\|35\|NC_009633\|CRISPRCasFinder,CRT	1762873-1762907	35	NZ_CP031197	Staphylococcus saprophyticus strain 1A plasmid unnamed1	4784-4818	8	0.771
NC_009633_8	8.20\|1762873\|35\|NC_009633\|CRISPRCasFinder,CRT	1762873-1762907	35	KY653120	Staphylococcus phage IME1348_01, complete genome	6066-6100	8	0.771
NC_009633_8	8.31\|1763605\|34\|NC_009633\|CRISPRCasFinder,CRT	1763605-1763638	34	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	19561-19594	8	0.765
NC_009633_9	9.16\|2275955\|35\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2275955-2275989	35	NC_010000	Shewanella baltica OS195 plasmid pS19503, complete sequence	3634-3668	9	0.743
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MT786458	Staphylococcus phage vB_SauH_SAP1, complete genome	138412-138445	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MG557618	Staphylococcus phage HSA30, complete genome	7515-7548	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	LR215718	Staphylococcus phage Stab20 genome assembly, chromosome: I	49983-50016	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MG721208	Staphylococcus phage vB_SauM_LM12, complete genome	97075-97108	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MN045228	Staphylococcus phage Maine, complete genome	49898-49931	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	KY779849	Staphylococcus phage qdsa002, complete genome	53131-53164	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MF001365	Staphylococcus phage SA3, partial genome	22608-22641	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MH159197	Staphylococcus phage VB_SavM_JYL01, complete genome	22699-22732	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MN304941	Staphylococcus phage vB_SauH_IME522, complete genome	129881-129914	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	MK250904	Staphylococcus phage VB-SavM-JYL02, complete genome	21271-21304	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	NC_025416	Staphylococcus phage MCE-2014, complete genome	51752-51785	9	0.735
NC_009633_9	9.21\|2276284\|34\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276284-2276317	34	NC_019448	Staphylococcus phage GH15, complete genome	49764-49797	9	0.735
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	KX077896	Streptococcus phage phiJH1301-2, complete genome	28872-28907	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	KC581799	Streptococcus phage phiD12, complete genome	23180-23215	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	MK448983	Streptococcus phage Javan558, complete genome	16684-16719	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	MN270277	Streptococcus phage phi-SsuYTJ2_rum, partial genome	24477-24512	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	MK448674	Streptococcus phage Javan123, complete genome	15635-15670	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	MK448819	Streptococcus phage Javan599, complete genome	16812-16847	10	0.722
NC_009633_9	9.23\|2276413\|36\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276413-2276448	36	MK359990	Streptococcus phage phi-SC181, complete genome	35442-35477	10	0.722
NC_009633_9	9.30\|2276874\|37\|NC_009633\|PILER-CR,CRISPRCasFinder,CRT	2276874-2276910	37	MN038175	Panteoa phage Phynn, complete genome	19143-19179	10	0.73

1. spacer 8.3|1762876|35|NC_009633|PILER-CR matches to NZ_CP031197 (Staphylococcus saprophyticus strain 1A plasmid unnamed1) position: , mismatch: 8, identity: 0.771

cccatacaactacattgaaaaaatccgctttttta	CRISPR spacer
taaatacaactacattgataaaatctgcttctctt	Protospacer
.  *************** ******.****.*.*

2. spacer 8.3|1762876|35|NC_009633|PILER-CR matches to KY653120 (Staphylococcus phage IME1348_01, complete genome) position: , mismatch: 8, identity: 0.771

cccatacaactacattgaaaaaatccgctttttta	CRISPR spacer
taaatacaactacattgataaaatctgcttctctt	Protospacer
.  *************** ******.****.*.*

3. spacer 8.14|1763619|34|NC_009633|PILER-CR matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 8, identity: 0.765

ttgttcacttagtccgttccattgttttttagtt	CRISPR spacer
tagttgtactactgcgttccattgttttttagtc	Protospacer
* ***   .** * *******************.

4. spacer 8.20|1762873|35|NC_009633|CRISPRCasFinder,CRT matches to NZ_CP031197 (Staphylococcus saprophyticus strain 1A plasmid unnamed1) position: , mismatch: 8, identity: 0.771

cccatacaactacattgaaaaaatccgctttttta	CRISPR spacer
taaatacaactacattgataaaatctgcttctctt	Protospacer
.  *************** ******.****.*.*

5. spacer 8.20|1762873|35|NC_009633|CRISPRCasFinder,CRT matches to KY653120 (Staphylococcus phage IME1348_01, complete genome) position: , mismatch: 8, identity: 0.771

cccatacaactacattgaaaaaatccgctttttta	CRISPR spacer
taaatacaactacattgataaaatctgcttctctt	Protospacer
.  *************** ******.****.*.*

6. spacer 8.31|1763605|34|NC_009633|CRISPRCasFinder,CRT matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 8, identity: 0.765

ttgttcacttagtccgttccattgttttttagtt	CRISPR spacer
tagttgtactactgcgttccattgttttttagtc	Protospacer
* ***   .** * *******************.

7. spacer 9.16|2275955|35|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to NC_010000 (Shewanella baltica OS195 plasmid pS19503, complete sequence) position: , mismatch: 9, identity: 0.743

cagcaaccaccaattcaaatctatattcaaatagt--	CRISPR spacer
cagcaagcaccaattcaaatcaata--agaacggcaa	Protospacer
****** ************** ***   .**..*.

8. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MT786458 (Staphylococcus phage vB_SauH_SAP1, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

9. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MG557618 (Staphylococcus phage HSA30, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

10. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to LR215718 (Staphylococcus phage Stab20 genome assembly, chromosome: I) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagttatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

11. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MG721208 (Staphylococcus phage vB_SauM_LM12, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

12. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MN045228 (Staphylococcus phage Maine, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

13. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to KY779849 (Staphylococcus phage qdsa002, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

14. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MF001365 (Staphylococcus phage SA3, partial genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

15. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MH159197 (Staphylococcus phage VB_SavM_JYL01, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

16. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MN304941 (Staphylococcus phage vB_SauH_IME522, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

17. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MK250904 (Staphylococcus phage VB-SavM-JYL02, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

18. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to NC_025416 (Staphylococcus phage MCE-2014, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagttatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

19. spacer 9.21|2276284|34|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to NC_019448 (Staphylococcus phage GH15, complete genome) position: , mismatch: 9, identity: 0.735

cgaaata-ggcagaatgatggaaatgttgttagat	CRISPR spacer
-aagctatggaagaatgatgaaaatgttgttaaga	Protospacer
 .*. ** ** *********.***********..

20. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to KX077896 (Streptococcus phage phiJH1301-2, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaatggacttggttcataatgata-----actcataaaa	Protospacer
 **.* ********************     *.*.*

21. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to KC581799 (Streptococcus phage phiD12, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaatggacttggttcataatgata-----actcataaaa	Protospacer
 **.* ********************     *.*.*

22. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MK448983 (Streptococcus phage Javan558, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaatggacttggttcataatgata-----actcataaaa	Protospacer
 **.* ********************     *.*.*

23. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MN270277 (Streptococcus phage phi-SsuYTJ2_rum, partial genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaagggacttggttcataatgata-----actcataaaa	Protospacer
 **.*.********************     *.*.*

24. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MK448674 (Streptococcus phage Javan123, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaagggacttggttcataatgata-----actcataaaa	Protospacer
 **.*.********************     *.*.*

25. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MK448819 (Streptococcus phage Javan599, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaatggacttggttcataatgata-----actcataaaa	Protospacer
 **.* ********************     *.*.*

26. spacer 9.23|2276413|36|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MK359990 (Streptococcus phage phi-SC181, complete genome) position: , mismatch: 10, identity: 0.722

ttggaaggacttggttcataatgataatggcattta-----	CRISPR spacer
atgaatggacttggttcataatgata-----actcataaaa	Protospacer
 **.* ********************     *.*.*

27. spacer 9.30|2276874|37|NC_009633|PILER-CR,CRISPRCasFinder,CRT matches to MN038175 (Panteoa phage Phynn, complete genome) position: , mismatch: 10, identity: 0.73

ttctaataaaaaactggatcatgagatcgtgaagatc	CRISPR spacer
gtcggtagaagaactggatcaagagatcgtgaagaaa	Protospacer
 ** .  .**.********** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

107950 : 143483

Leptospira_phage(25.0%)

tRNA,bacteriocin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011971242.1\|107950_108718_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_011971243.1\|108710_109550_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.0e-61	47.2
WP_011971244.1\|109661_109901_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.4e-19	59.7
WP_011971245.1\|110288_111707_+	HD domain-containing protein	A0A0F6YPT7	Sinorhizobium_phage	5.3e-21	25.1
WP_011971246.1\|111824_113273_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-137	52.7
WP_011971247.1\|113528_114104_+	spore maturation protein	NA	NA	NA	NA
WP_157047119.1\|114100_114640_+	spore maturation protein	NA	NA	NA	NA
WP_011971249.1\|114704_115664_+	P1 family peptidase	NA	NA	NA	NA
WP_157047120.1\|115800_115941_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_011971250.1\|115940_116507_-	accessory gene regulator B family protein	NA	NA	NA	NA
WP_083760767.1\|116850_117228_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_011971252.1\|117323_119636_+	hypothetical protein	NA	NA	NA	NA
WP_011971253.1\|119635_120268_+\|bacteriocin	putative bacteriocin export ABC transporter	G9BWD6	Planktothrix_phage	2.1e-30	39.3
WP_011971254.1\|120430_121693_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_041721275.1\|121715_122444_-	response regulator	NA	NA	NA	NA
WP_083760768.1\|122821_122980_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_011971256.1\|123521_123989_-	hypothetical protein	NA	NA	NA	NA
WP_011971257.1\|124353_124602_+	hypothetical protein	NA	NA	NA	NA
WP_157047121.1\|124878_125034_+	hypothetical protein	NA	NA	NA	NA
WP_011971258.1\|125265_126558_-	hypothetical protein	NA	NA	NA	NA
WP_011971259.1\|126550_127066_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011971260.1\|127233_127812_-	hypothetical protein	NA	NA	NA	NA
WP_011971261.1\|128719_130687_+\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.5e-98	32.7
WP_011971262.1\|130701_131469_+	TatD family hydrolase	NA	NA	NA	NA
WP_011971263.1\|131923_132112_+	hypothetical protein	NA	NA	NA	NA
WP_011971264.1\|132214_132970_+\|transposase	transposase	NA	NA	NA	NA
WP_011971265.1\|133050_133362_+	hypothetical protein	NA	NA	NA	NA
WP_083760770.1\|133463_133754_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.5e-15	45.1
WP_157047349.1\|133862_135434_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.6e-66	34.3
WP_011971268.1\|135704_137579_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_011971269.1\|137649_138087_+	hypothetical protein	NA	NA	NA	NA
WP_011971270.1\|138304_138898_-	hypothetical protein	NA	NA	NA	NA
WP_011971271.1\|139280_140108_-	hypothetical protein	NA	NA	NA	NA
WP_011971272.1\|140127_140961_-	hypothetical protein	NA	NA	NA	NA
WP_157047122.1\|141076_141217_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_041720175.1\|141198_141813_-	accessory gene regulator B family protein	NA	NA	NA	NA
WP_083760774.1\|141938_142397_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_011971275.1\|142709_143483_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

432400 : 453157

Deep-sea_thermophilic_phage(21.05%)

terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083760799.1\|432400_433174_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JU23	Anoxybacillus_phage	7.1e-28	37.8
WP_011971545.1\|433227_433542_+	hypothetical protein	NA	NA	NA	NA
WP_011971547.1\|434193_434487_+	hypothetical protein	NA	NA	NA	NA
WP_157047353.1\|434503_434782_+	hypothetical protein	A0A2K9VH10	Faecalibacterium_phage	5.3e-10	37.2
WP_011971549.1\|434781_435348_+	DUF3486 family protein	A0A2H4JAV3	uncultured_Caudovirales_phage	4.4e-27	34.4
WP_011971550.1\|435361_435850_+	antiterminator LoaP	NA	NA	NA	NA
WP_011971551.1\|436106_437564_+\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	1.4e-109	46.6
WP_011971552.1\|437581_438931_+	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	5.7e-65	34.4
WP_011971553.1\|438923_439706_+\|head	head morphogenesis protein	A0A2I7RZ42	Vibrio_phage	5.1e-18	31.8
WP_041720248.1\|439686_440823_+	DUF2213 domain-containing protein	H2BCR3	Synechococcus_phage	1.2e-15	28.0
WP_011971555.1\|440838_441339_+	hypothetical protein	NA	NA	NA	NA
WP_011971556.1\|441361_442276_+	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	5.4e-59	43.5
WP_011971557.1\|442291_442624_+	hypothetical protein	NA	NA	NA	NA
WP_011971558.1\|442626_442959_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_011971559.1\|442971_443574_+	hypothetical protein	A8ATG9	Listeria_phage	9.7e-41	48.0
WP_011971560.1\|443570_443933_+	hypothetical protein	NA	NA	NA	NA
WP_011971561.1\|443929_444436_+	hypothetical protein	NA	NA	NA	NA
WP_011971562.1\|444447_445452_+	DUF3383 family protein	E5DV56	Deep-sea_thermophilic_phage	1.5e-57	37.2
WP_011971563.1\|445463_445868_+	hypothetical protein	A0A1L2K2P1	Aeribacillus_phage	2.3e-14	36.2
WP_011971564.1\|445923_446178_+	hypothetical protein	NA	NA	NA	NA
WP_011971565.1\|446238_446562_+	hypothetical protein	NA	NA	NA	NA
WP_011971566.1\|446670_448428_+\|tail	tail tape measure protein	A0A1C9M1I4	Mycobacterium_phage	1.8e-10	35.1
WP_011971567.1\|448440_449031_+	hypothetical protein	A0A2H4JD33	uncultured_Caudovirales_phage	4.7e-08	30.5
WP_157047354.1\|449030_449357_+	hypothetical protein	E5DV60	Deep-sea_thermophilic_phage	3.3e-19	50.5
WP_011971569.1\|449343_450120_+	hypothetical protein	E5DV61	Deep-sea_thermophilic_phage	1.7e-42	34.7
WP_011971570.1\|450116_450413_+	hypothetical protein	NA	NA	NA	NA
WP_157047130.1\|450409_450775_+	DUF2634 domain-containing protein	A0A1L2JY67	Aeribacillus_phage	3.7e-11	41.4
WP_011971572.1\|450767_451955_+	hypothetical protein	A0A1L2JY69	Aeribacillus_phage	2.9e-89	45.2
WP_011971573.1\|451947_452577_+	hypothetical protein	A0A1L2JZ80	Aeribacillus_phage	1.5e-44	47.9
WP_011971574.1\|452587_453157_+	hypothetical protein	E5DV66	Deep-sea_thermophilic_phage	1.3e-10	49.1

DBSCAN-SWA_3

872332 : 879253

Clostridium_phage(37.5%)

integrase

attL 869556:869572|attR 883364:883380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
869556:869572	attL	NA	NA	NA	NA
WP_012062101.1\|872332_872617_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	2.3e-16	44.7
WP_012062102.1\|872699_874343_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.7e-154	56.9
WP_012062103.1\|874444_875593_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	5.0e-78	44.4
WP_012062104.1\|875597_875756_-	hypothetical protein	NA	NA	NA	NA
WP_012062105.1\|875814_876273_-	membrane protein	A0A0A7RTX7	Clostridium_phage	3.9e-34	50.8
WP_041720332.1\|876293_876623_-	helix-turn-helix domain-containing protein	R9TNF4	Paenibacillus_phage	1.7e-23	52.3
WP_012062107.1\|876842_877055_+	phage protein	R9TME1	Paenibacillus_phage	5.1e-13	55.7
WP_012062108.1\|877088_877334_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012062109.1\|877351_878182_+	phage antirepressor	A0A0A8WIE3	Clostridium_phage	1.0e-85	62.2
WP_012062110.1\|878332_879253_+	hypothetical protein	A0A2I7S3S2	Vibrio_phage	3.0e-33	37.3
883364:883380	attR	NA	NA	NA	NA

DBSCAN-SWA_4

953355 : 960827

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012062179.1\|953355_953868_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-24	44.7
WP_041721388.1\|953889_954591_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	2.7e-42	40.7
WP_041720353.1\|954601_954847_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_012062182.1\|954860_955541_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012062183.1\|955533_957750_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.2e-158	42.9
WP_012062184.1\|957719_959153_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.9e-65	35.0
WP_041721389.1\|959145_960183_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SR00	Cyanophage	1.2e-67	41.6
WP_012062186.1\|960170_960827_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.1e-21	32.8

DBSCAN-SWA_5

1060945 : 1068929

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012062272.1\|1060945_1062574_+	response regulator	A0A1V0SGX0	Hokovirus	3.2e-38	34.5
WP_012062273.1\|1062590_1063286_-	response regulator transcription factor	Q56AR1	Bacillus_thuringiensis_phage	1.9e-08	30.3
WP_012062274.1\|1063608_1063785_+	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA	NA	NA	NA
WP_041721401.1\|1064045_1064465_+	nucleoside recognition protein	NA	NA	NA	NA
WP_041720370.1\|1064461_1064941_+	nucleoside recognition protein	NA	NA	NA	NA
WP_041721402.1\|1065422_1066508_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-49	38.2
WP_012062278.1\|1066512_1067169_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.5e-36	42.2
WP_012062279.1\|1067254_1068466_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-110	51.6
WP_012062280.1\|1068467_1068929_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	58.8

DBSCAN-SWA_6

1082767 : 1119856

Enterobacteria_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012062294.1\|1082767_1083592_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012062295.1\|1084047_1084917_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_083760838.1\|1085102_1085471_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012062296.1\|1085724_1085967_+	hypothetical protein	NA	NA	NA	NA
WP_012062297.1\|1086318_1087860_+	radical SAM protein	NA	NA	NA	NA
WP_083760839.1\|1087952_1088324_+	response regulator transcription factor	NA	NA	NA	NA
WP_012062299.1\|1088661_1088859_+	hypothetical protein	NA	NA	NA	NA
WP_012062300.1\|1088950_1089766_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_157047160.1\|1090103_1090298_-	hypothetical protein	NA	NA	NA	NA
WP_012062302.1\|1090316_1091060_-	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.6e-48	40.7
WP_157047161.1\|1091047_1092622_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.5e-19	29.5
WP_012062305.1\|1095114_1095351_+	hypothetical protein	NA	NA	NA	NA
WP_012062307.1\|1096092_1096596_+	hypothetical protein	NA	NA	NA	NA
WP_041720383.1\|1096867_1097536_-	hypothetical protein	NA	NA	NA	NA
WP_083761089.1\|1097669_1097864_+	response regulator transcription factor	NA	NA	NA	NA
WP_012062308.1\|1098204_1098423_+	hypothetical protein	NA	NA	NA	NA
WP_157047162.1\|1099104_1099266_+	hypothetical protein	NA	NA	NA	NA
WP_012062309.1\|1099622_1100165_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012062310.1\|1101170_1101614_+	reverse transcriptase	NA	NA	NA	NA
WP_012062311.1\|1101571_1103629_-	serine recombinase	NA	NA	NA	NA
WP_049765188.1\|1104189_1104564_+	hypothetical protein	NA	NA	NA	NA
WP_012062312.1\|1104727_1104967_+	hypothetical protein	NA	NA	NA	NA
WP_012062313.1\|1105571_1108877_+	peptidase M16	NA	NA	NA	NA
WP_012062314.1\|1109337_1110114_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012062315.1\|1110153_1110312_+	hypothetical protein	NA	NA	NA	NA
WP_012062316.1\|1110495_1110903_+	hypothetical protein	NA	NA	NA	NA
WP_041720385.1\|1111150_1111360_+	hypothetical protein	NA	NA	NA	NA
WP_012062317.1\|1111457_1113227_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_012062318.1\|1113298_1114840_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012062319.1\|1115205_1116195_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_012062320.1\|1116650_1117937_+	trigger factor	NA	NA	NA	NA
WP_012062321.1\|1117984_1118569_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.3e-54	56.2
WP_012062322.1\|1118593_1119856_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.3e-151	63.3

DBSCAN-SWA_7

1530167 : 1559972

Enterobacteria_phage(40.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157047161.1\|1530167_1531742_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.5e-19	29.5
WP_012062302.1\|1531729_1532473_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.6e-48	40.7
WP_157047160.1\|1532491_1532686_+	hypothetical protein	NA	NA	NA	NA
WP_041720473.1\|1532738_1533287_+	hypothetical protein	NA	NA	NA	NA
WP_157047183.1\|1533388_1533976_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_157047185.1\|1534332_1535145_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_083760884.1\|1535105_1535558_-	DUF4277 domain-containing protein	NA	NA	NA	NA
WP_041720479.1\|1535863_1536091_+	hypothetical protein	NA	NA	NA	NA
WP_012062712.1\|1536160_1537111_-	hypothetical protein	NA	NA	NA	NA
WP_157047187.1\|1537286_1537622_+	DUF4277 domain-containing protein	NA	NA	NA	NA
WP_041720482.1\|1537618_1538473_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_041720484.1\|1538496_1538943_+	hypothetical protein	NA	NA	NA	NA
WP_157047375.1\|1539377_1539755_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012062714.1\|1539852_1541028_+	ArsA family ATPase	NA	NA	NA	NA
WP_157047376.1\|1541011_1541875_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.9e-15	29.6
WP_012062716.1\|1541871_1542564_+	ABC transporter permease	NA	NA	NA	NA
WP_012062717.1\|1542567_1543284_+	hypothetical protein	NA	NA	NA	NA
WP_083760886.1\|1543382_1544279_-	hypothetical protein	NA	NA	NA	NA
WP_012062719.1\|1544536_1544929_-	hypothetical protein	NA	NA	NA	NA
WP_085938821.1\|1544921_1545701_-	glucosaminidase domain-containing protein	J9PUD3	Bacillus_phage	2.0e-22	39.5
WP_012062721.1\|1546177_1546630_-	hypothetical protein	NA	NA	NA	NA
WP_012062722.1\|1546791_1547298_-	hypothetical protein	NA	NA	NA	NA
WP_049765233.1\|1547467_1548634_+\|protease	protease complex subunit PrcB family protein	NA	NA	NA	NA
WP_012062724.1\|1548804_1549284_-	hypothetical protein	NA	NA	NA	NA
WP_012062725.1\|1549582_1550818_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_012062726.1\|1551115_1553455_+	hypothetical protein	NA	NA	NA	NA
WP_012062727.1\|1554283_1554475_+	hypothetical protein	NA	NA	NA	NA
WP_012062728.1\|1554644_1555280_+	flavodoxin family protein	NA	NA	NA	NA
WP_012062729.1\|1555575_1556043_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_012062730.1\|1556343_1557951_+\|protease	protease complex subunit PrcB family protein	NA	NA	NA	NA
WP_157047377.1\|1558433_1559972_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	3.8e-25	26.1

DBSCAN-SWA_8

1657084 : 1710782

Bacillus_virus(22.22%)

integrase,protease,transposase

attL 1668170:1668186|attR 1714494:1714510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012062799.1\|1657084_1658434_-\|transposase	transposase	NA	NA	NA	NA
WP_012062800.1\|1658537_1659122_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012062801.1\|1659417_1660056_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.9e-08	29.4
WP_012062802.1\|1660325_1661390_+	hypothetical protein	NA	NA	NA	NA
WP_012062803.1\|1661544_1662330_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_012062804.1\|1662333_1662969_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-20	32.3
WP_012062805.1\|1662984_1663293_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012062806.1\|1663471_1664671_+	chromate efflux transporter	NA	NA	NA	NA
WP_012062807.1\|1664903_1665854_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_012062808.1\|1665834_1666362_-	DUF4364 family protein	NA	NA	NA	NA
WP_012062809.1\|1666491_1666698_-	alpha/beta-type small acid-soluble spore protein	G3MAF8	Bacillus_virus	1.5e-09	43.1
WP_157047198.1\|1667113_1668175_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1668170:1668186	attL	NA	NA	NA	NA
WP_012062811.1\|1668187_1669645_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157047200.1\|1669652_1671212_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012062813.1\|1671198_1671663_+	hypothetical protein	NA	NA	NA	NA
WP_049765237.1\|1671807_1672044_-	helix-turn-helix transcriptional regulator	A0A2K9V2T3	Faecalibacterium_phage	2.6e-05	40.8
WP_012062815.1\|1672173_1673805_+	ATP-binding protein	NA	NA	NA	NA
WP_041720509.1\|1674232_1674580_-\|transposase	transposase	NA	NA	NA	NA
WP_012062816.1\|1674606_1675683_-	maturase	A0A0U4J920	Pseudomonas_phage	1.3e-80	47.7
WP_157047201.1\|1675685_1676003_+	hypothetical protein	NA	NA	NA	NA
WP_012062817.1\|1676261_1678319_+	recombinase family protein	NA	NA	NA	NA
WP_012062818.1\|1678327_1678777_-	reverse transcriptase	NA	NA	NA	NA
WP_083760902.1\|1679302_1679932_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157047202.1\|1679877_1680156_-	hypothetical protein	NA	NA	NA	NA
WP_012062821.1\|1680407_1680632_+	TIGR04540 family protein	NA	NA	NA	NA
WP_012062822.1\|1680695_1683272_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	9.4e-109	45.1
WP_083761093.1\|1683877_1684498_+	hypothetical protein	NA	NA	NA	NA
WP_012062824.1\|1684516_1687600_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_012062825.1\|1688018_1693046_+	transcriptional regulator	NA	NA	NA	NA
WP_012062826.1\|1693791_1695792_+	hypothetical protein	NA	NA	NA	NA
WP_012062827.1\|1696256_1697477_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-49	51.0
WP_041720511.1\|1697521_1697704_+	hypothetical protein	NA	NA	NA	NA
WP_083760904.1\|1697908_1698148_-	hypothetical protein	NA	NA	NA	NA
WP_012062828.1\|1698867_1699563_+	epoxyqueuosine reductase	NA	NA	NA	NA
WP_041720513.1\|1699579_1699768_-	hypothetical protein	NA	NA	NA	NA
WP_012062829.1\|1699968_1701069_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_157047380.1\|1701096_1702014_-	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_012062831.1\|1702177_1703410_-	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_012062832.1\|1703562_1704327_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_157047381.1\|1704500_1705985_+	UDP-N-acetylmuramyl-tripeptide synthetase	NA	NA	NA	NA
WP_012062834.1\|1706111_1706771_+	single-stranded DNA-binding protein	A0A2H4J8K3	uncultured_Caudovirales_phage	3.3e-50	47.8
WP_157047203.1\|1706832_1706973_+	hypothetical protein	NA	NA	NA	NA
WP_012062835.1\|1707248_1707716_-	GAF domain-containing protein	NA	NA	NA	NA
WP_012062836.1\|1707894_1708434_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	2.1e-10	28.1
WP_012062837.1\|1708593_1709757_+	amidohydrolase	NA	NA	NA	NA
WP_012062838.1\|1709777_1710782_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
1714494:1714510	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2032265 : 2057050

Deep-sea_thermophilic_phage(20.0%)

terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083760799.1\|2032265_2033039_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JU23	Anoxybacillus_phage	7.1e-28	37.8
WP_011971545.1\|2033092_2033407_+	hypothetical protein	NA	NA	NA	NA
WP_011971547.1\|2034058_2034352_+	hypothetical protein	NA	NA	NA	NA
WP_157047353.1\|2034368_2034647_+	hypothetical protein	A0A2K9VH10	Faecalibacterium_phage	5.3e-10	37.2
WP_011971549.1\|2034646_2035213_+	DUF3486 family protein	A0A2H4JAV3	uncultured_Caudovirales_phage	4.4e-27	34.4
WP_011971550.1\|2035226_2035715_+	antiterminator LoaP	NA	NA	NA	NA
WP_011971551.1\|2035971_2037429_+\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	1.4e-109	46.6
WP_011971552.1\|2037446_2038796_+	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	5.7e-65	34.4
WP_011971553.1\|2038788_2039571_+\|head	head morphogenesis protein	A0A2I7RZ42	Vibrio_phage	5.1e-18	31.8
WP_041720248.1\|2039551_2040688_+	DUF2213 domain-containing protein	H2BCR3	Synechococcus_phage	1.2e-15	28.0
WP_011971555.1\|2040703_2041204_+	hypothetical protein	NA	NA	NA	NA
WP_011971556.1\|2041226_2042141_+	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	5.4e-59	43.5
WP_011971557.1\|2042156_2042489_+	hypothetical protein	NA	NA	NA	NA
WP_011971558.1\|2042491_2042824_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_011971559.1\|2042836_2043439_+	hypothetical protein	A8ATG9	Listeria_phage	9.7e-41	48.0
WP_011971560.1\|2043435_2043798_+	hypothetical protein	NA	NA	NA	NA
WP_011971561.1\|2043794_2044301_+	hypothetical protein	NA	NA	NA	NA
WP_011971562.1\|2044312_2045317_+	DUF3383 family protein	E5DV56	Deep-sea_thermophilic_phage	1.5e-57	37.2
WP_011971563.1\|2045328_2045733_+	hypothetical protein	A0A1L2K2P1	Aeribacillus_phage	2.3e-14	36.2
WP_011971564.1\|2045788_2046043_+	hypothetical protein	NA	NA	NA	NA
WP_011971565.1\|2046103_2046427_+	hypothetical protein	NA	NA	NA	NA
WP_011971566.1\|2046535_2048293_+\|tail	tail tape measure protein	A0A1C9M1I4	Mycobacterium_phage	1.8e-10	35.1
WP_011971567.1\|2048305_2048896_+	hypothetical protein	A0A2H4JD33	uncultured_Caudovirales_phage	4.7e-08	30.5
WP_157047354.1\|2048895_2049222_+	hypothetical protein	E5DV60	Deep-sea_thermophilic_phage	3.3e-19	50.5
WP_011971569.1\|2049208_2049985_+	hypothetical protein	E5DV61	Deep-sea_thermophilic_phage	1.7e-42	34.7
WP_011971570.1\|2049981_2050278_+	hypothetical protein	NA	NA	NA	NA
WP_157047130.1\|2050274_2050640_+	DUF2634 domain-containing protein	A0A1L2JY67	Aeribacillus_phage	3.7e-11	41.4
WP_011971572.1\|2050632_2051820_+	hypothetical protein	A0A1L2JY69	Aeribacillus_phage	2.9e-89	45.2
WP_011971573.1\|2051812_2052442_+	hypothetical protein	A0A1L2JZ80	Aeribacillus_phage	1.5e-44	47.9
WP_011971574.1\|2052452_2053022_+	hypothetical protein	E5DV66	Deep-sea_thermophilic_phage	1.3e-10	49.1
WP_011971575.1\|2053023_2053272_+	hypothetical protein	NA	NA	NA	NA
WP_157047131.1\|2053255_2053399_+	XkdX family protein	NA	NA	NA	NA
WP_012063122.1\|2055024_2055630_+	lipase	NA	NA	NA	NA
WP_012063123.1\|2055643_2057050_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	1.3e-64	35.6

DBSCAN-SWA_10

2426714 : 2490791

Clostridium_phage(35.71%)

terminase,holin,head,tRNA,capsid,tail,integrase,protease,plate,portal

attL 2447077:2447097|attR 2493031:2493051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012063487.1\|2426714_2427974_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_041720720.1\|2427981_2429760_+\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	6.4e-16	26.6
WP_012063489.1\|2429912_2430221_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_041720722.1\|2430545_2431298_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_012063491.1\|2431366_2431792_+	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_157047398.1\|2431833_2432280_-	threonine/serine exporter	NA	NA	NA	NA
WP_012063493.1\|2432279_2433065_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_012063494.1\|2433263_2434496_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.4e-93	50.0
WP_012063495.1\|2434681_2436109_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012063496.1\|2436411_2437458_+	dihydrodipicolinate reductase	NA	NA	NA	NA
WP_157047399.1\|2437587_2437692_+	hypothetical protein	NA	NA	NA	NA
WP_012063498.1\|2437772_2439200_+	PLP-dependent lyase/thiolase	NA	NA	NA	NA
WP_012063499.1\|2439219_2439585_+	ornithine aminomutase	NA	NA	NA	NA
WP_012063500.1\|2439584_2441795_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012063501.1\|2441784_2443149_+	methylaspartate mutase	NA	NA	NA	NA
WP_041720726.1\|2443153_2444233_+	alanine/ornithine racemase family PLP-dependent enzyme	NA	NA	NA	NA
WP_012063503.1\|2444299_2445310_+	hypothetical protein	NA	NA	NA	NA
WP_012063504.1\|2445410_2445833_-	hypothetical protein	NA	NA	NA	NA
WP_012063505.1\|2445807_2446863_-	hypothetical protein	NA	NA	NA	NA
2447077:2447097	attL	NA	NA	NA	NA
WP_012063506.1\|2447090_2448680_-	resolvase	A0A1L2BY67	Clostridium_phage	4.0e-110	43.0
WP_012063507.1\|2449332_2449704_+	hypothetical protein	NA	NA	NA	NA
WP_012063508.1\|2450044_2450680_+	hypothetical protein	NA	NA	NA	NA
WP_012063509.1\|2451494_2452295_+	hypothetical protein	NA	NA	NA	NA
WP_157047238.1\|2452928_2454239_+	hypothetical protein	NA	NA	NA	NA
WP_012063511.1\|2454772_2455861_+	ATP-binding protein	A0A2K9R7H3	Dishui_lake_phycodnavirus	5.8e-20	30.4
WP_012063512.1\|2455872_2458221_+	S8 family peptidase	NA	NA	NA	NA
WP_012063513.1\|2458283_2458736_-	hypothetical protein	NA	NA	NA	NA
WP_157047239.1\|2458728_2459202_-	hypothetical protein	NA	NA	NA	NA
WP_012063515.1\|2459438_2459993_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_012063516.1\|2460004_2460688_-	hypothetical protein	NA	NA	NA	NA
WP_041720729.1\|2460850_2461072_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012063518.1\|2461107_2461374_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049765250.1\|2461436_2461814_+	hypothetical protein	NA	NA	NA	NA
WP_012063520.1\|2461857_2462037_+	hypothetical protein	NA	NA	NA	NA
WP_012063521.1\|2462300_2462570_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083760975.1\|2462506_2462965_+	hypothetical protein	NA	NA	NA	NA
WP_012063524.1\|2463165_2463492_+	hypothetical protein	NA	NA	NA	NA
WP_012063525.1\|2463554_2464295_+	DUF2303 family protein	I3VYY2	Thermoanaerobacterium_phage	7.9e-53	46.8
WP_012063526.1\|2464432_2464912_+	hypothetical protein	A6M985	Geobacillus_virus	1.7e-43	56.8
WP_157047240.1\|2464916_2465357_+	hypothetical protein	A0A0A7RTS3	Clostridium_phage	1.3e-07	35.1
WP_157047241.1\|2465367_2465517_+	hypothetical protein	NA	NA	NA	NA
WP_085938823.1\|2465655_2465931_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_012063530.1\|2465950_2466172_+	hypothetical protein	NA	NA	NA	NA
WP_012063531.1\|2466183_2466375_+	hypothetical protein	NA	NA	NA	NA
WP_041720734.1\|2466450_2466891_-	hypothetical protein	A0A2H4J9F0	uncultured_Caudovirales_phage	2.5e-46	58.2
WP_012063533.1\|2467041_2467227_-	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_012063534.1\|2467762_2468236_+	sigma factor	NA	NA	NA	NA
WP_041720736.1\|2468334_2468544_+	hypothetical protein	NA	NA	NA	NA
WP_041720738.1\|2468787_2469198_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_012063536.1\|2469285_2469894_+\|integrase	tyrosine-type recombinase/integrase	A0A1L2BY87	Clostridium_phage	2.6e-62	59.2
WP_012063537.1\|2470252_2470903_+	YqaS	A0A0A8WFS6	Clostridium_phage	1.9e-34	47.1
WP_012063538.1\|2470904_2471585_+	hypothetical protein	A0A023J2U4	Lactococcus_phage	8.7e-06	34.7
WP_157047242.1\|2471619_2472015_+	hypothetical protein	A0A290GJQ7	Caldibacillus_phage	4.4e-10	37.8
WP_157047400.1\|2472119_2473757_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	2.4e-78	34.2
WP_157047243.1\|2473768_2473933_+	hypothetical protein	NA	NA	NA	NA
WP_049765340.1\|2473981_2475181_+\|portal	phage portal protein	A0A059PAW6	Leuconostoc_phage	4.5e-05	25.9
WP_012063542.1\|2475173_2475824_+\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_012063543.1\|2475834_2477124_+\|capsid	phage major capsid protein	H7BUQ0	unidentified_phage	5.1e-63	47.2
WP_157047244.1\|2477174_2477369_+	hypothetical protein	NA	NA	NA	NA
WP_012063545.1\|2477368_2477650_+\|head,tail	phage gp6-like head-tail connector protein	A0A0A7RWM0	Clostridium_phage	5.2e-13	39.3
WP_012063546.1\|2477646_2477976_+\|head	phage head closure protein	NA	NA	NA	NA
WP_012063547.1\|2477975_2478407_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012063548.1\|2478411_2478831_+	hypothetical protein	J9QE32	Clostridium_phage	3.5e-05	32.6
WP_012063549.1\|2478837_2479893_+\|terminase	terminase	A0A0A8WJL8	Clostridium_phage	4.1e-79	46.2
WP_012063550.1\|2479908_2480352_+\|tail	phage tail tube protein	A0A1V0DZX1	Clostridioides_phage	6.9e-20	38.0
WP_012063551.1\|2480354_2480762_+	hypothetical protein	A0A0A8WIB2	Clostridium_phage	3.2e-11	33.9
WP_012063552.1\|2480948_2481446_+	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	2.3e-11	38.7
WP_012063553.1\|2481541_2482465_+	HNH endonuclease	U5Q199	Bacillus_phage	1.1e-30	35.2
WP_012063554.1\|2482692_2484132_+	hypothetical protein	A0A290GHN6	Caldibacillus_phage	2.0e-15	37.7
WP_012063555.1\|2484142_2484559_+	hypothetical protein	NA	NA	NA	NA
WP_157047245.1\|2484593_2485547_+	hypothetical protein	NA	NA	NA	NA
WP_012063557.1\|2485547_2485937_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_083760977.1\|2485930_2486377_+	DUF2634 domain-containing protein	A0A1V0DZX2	Clostridioides_phage	3.8e-10	34.8
WP_012063559.1\|2486369_2487437_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	4.1e-50	36.9
WP_012063560.1\|2487429_2487963_+	YmfQ family protein	A0A0A7RUW8	Clostridium_phage	2.3e-17	35.4
WP_012063561.1\|2487962_2488235_+	hypothetical protein	NA	NA	NA	NA
WP_012063562.1\|2488234_2488864_+	hypothetical protein	NA	NA	NA	NA
WP_012063563.1\|2488876_2489272_+	hypothetical protein	NA	NA	NA	NA
WP_012063564.1\|2489264_2489444_+	hypothetical protein	NA	NA	NA	NA
WP_157047246.1\|2489456_2489582_+	XkdX family protein	NA	NA	NA	NA
WP_012063566.1\|2489628_2490072_+\|holin	phage holin family protein	A0A1B1P7S2	Bacillus_phage	1.0e-18	36.9
WP_012063567.1\|2490068_2490791_+	N-acetylmuramoyl-L-alanine amidase	D6QWM8	uncultured_phage	4.0e-33	42.2
2493031:2493051	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2571399 : 2618712

uncultured_Caudovirales_phage(31.58%)

terminase,transposase,tRNA,tail,integrase,protease,plate,portal

attL 2572052:2572067|attR 2601346:2601361

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041721626.1\|2571399_2571990_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_012063659.1\|2572000_2572747_+	chromosome segregation and condensation protein ScpA	A0A1B1IVW1	uncultured_Mediterranean_phage	1.6e-05	22.1
2572052:2572067	attL	NA	NA	NA	NA
WP_012063660.1\|2572763_2573336_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.6e-16	31.0
WP_012063661.1\|2573341_2574187_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_157047252.1\|2574265_2574424_-	hypothetical protein	NA	NA	NA	NA
WP_012063662.1\|2575153_2576272_+\|integrase	tyrosine-type recombinase/integrase	A0A2R2ZHE2	Clostridioides_phage	3.3e-10	23.2
WP_012063663.1\|2576368_2576989_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	2.7e-14	53.6
WP_041721570.1\|2577207_2578662_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_012063664.1\|2578807_2580088_-	hypothetical protein	NA	NA	NA	NA
WP_041720773.1\|2580132_2580369_-	hypothetical protein	NA	NA	NA	NA
WP_012063665.1\|2580379_2580934_-	hypothetical protein	NA	NA	NA	NA
WP_012063666.1\|2580914_2581520_-	HSR1-like GTP-binding protein	NA	NA	NA	NA
WP_157047403.1\|2581520_2582417_-	AAA family ATPase	G3MAX6	Bacillus_virus	6.0e-55	42.7
WP_041721629.1\|2582669_2582915_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_012063669.1\|2582948_2583887_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_012063670.1\|2583902_2585816_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.5e-66	29.9
WP_012063671.1\|2585855_2588498_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.4e-45	23.9
WP_012063672.1\|2588598_2590029_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_083760991.1\|2590108_2590435_-	hypothetical protein	NA	NA	NA	NA
WP_157047404.1\|2590415_2590604_-	hypothetical protein	NA	NA	NA	NA
WP_012063675.1\|2590701_2591670_-	sporulation domain-containing protein	A0A2K9V338	Faecalibacterium_phage	2.8e-66	69.1
WP_012063676.1\|2591684_2591930_-	membrane protein	A0A0A7RTX0	Clostridium_phage	3.6e-10	46.7
WP_012063677.1\|2591999_2593082_-	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	9.0e-122	59.2
WP_012063678.1\|2593404_2593746_-	diversity-generating retroelement protein Avd	A0A0N7ACE0	Bacillus_phage	1.3e-29	59.3
WP_041720776.1\|2593819_2594881_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	H7BVP1	unidentified_phage	6.8e-90	50.0
WP_012063680.1\|2594877_2595231_-	hypothetical protein	A0A0N7ACI4	Bacillus_phage	3.3e-25	53.2
WP_012063682.1\|2595394_2595838_-	hypothetical protein	A0A0N7ACL0	Bacillus_phage	5.3e-20	39.6
WP_012063683.1\|2595839_2596139_-	hypothetical protein	NA	NA	NA	NA
WP_012063684.1\|2596138_2597035_-	YmfQ family protein	A0A2H4J1P4	uncultured_Caudovirales_phage	2.6e-26	39.6
WP_012063685.1\|2597031_2598168_-\|plate	baseplate J/gp47 family protein	A0A2H4J7K8	uncultured_Caudovirales_phage	1.4e-77	46.3
WP_012063686.1\|2598172_2598637_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	4.7e-35	49.7
WP_012063687.1\|2598636_2599047_-	hypothetical protein	A0A2H4J746	uncultured_Caudovirales_phage	4.6e-10	36.5
WP_012063688.1\|2599033_2599987_-	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	7.8e-61	45.0
WP_012063689.1\|2599992_2600643_-	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	3.4e-31	40.8
WP_083761099.1\|2600653_2602786_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	1.3e-52	33.4
2601346:2601361	attR	NA	NA	NA	NA
WP_012063692.1\|2603241_2603691_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	3.5e-43	66.2
WP_012063693.1\|2603707_2604118_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	1.5e-45	61.7
WP_012063694.1\|2604135_2605548_-\|portal	phage portal protein	A0A2H4J1N7	uncultured_Caudovirales_phage	5.6e-148	53.8
WP_012063695.1\|2605550_2605781_-	hypothetical protein	A0A2H4J7J8	uncultured_Caudovirales_phage	9.1e-08	47.7
WP_012063696.1\|2605792_2606611_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	3.8e-72	48.5
WP_012063697.1\|2606621_2607032_-	hypothetical protein	A0A2H4J736	uncultured_Caudovirales_phage	9.8e-37	54.7
WP_012063698.1\|2607031_2607409_-	hypothetical protein	B6SBT3	Clostridium_virus	2.4e-21	40.3
WP_012063699.1\|2607408_2607729_-	hypothetical protein	NA	NA	NA	NA
WP_012063700.1\|2607769_2608804_-	hypothetical protein	A0A0A8WEW9	Clostridium_phage	9.8e-126	61.5
WP_012063701.1\|2608815_2609226_-	DUF2190 family protein	A0A0A8WJN5	Clostridium_phage	2.3e-30	55.6
WP_012063702.1\|2609244_2610621_-	hypothetical protein	A0A0A8WFF1	Clostridium_phage	1.4e-127	54.5
WP_012063703.1\|2610638_2611655_-	hypothetical protein	A0A1J1GF13	Clostridium_phage	4.7e-88	47.2
WP_012063704.1\|2611647_2613144_-\|portal	phage portal protein	A0A0A8WI73	Clostridium_phage	3.3e-199	68.9
WP_012063705.1\|2613136_2614546_-	DEAD/DEAH box helicase family protein	A0A0A8WEW2	Clostridium_phage	8.8e-210	76.3
WP_157047253.1\|2614538_2615444_-\|terminase	terminase	A0A0A8WJN3	Clostridium_phage	7.0e-43	51.1
WP_041720779.1\|2615436_2615715_-	hypothetical protein	NA	NA	NA	NA
WP_012063708.1\|2615671_2616946_-	lactate dehydrogenase	A0A2I4R670	Erysipelothrix_phage	1.6e-130	55.9
WP_012063709.1\|2617035_2617530_-	hypothetical protein	NA	NA	NA	NA
WP_157047254.1\|2617540_2618242_-	hypothetical protein	D7RWH3	Brochothrix_phage	8.9e-38	38.1
WP_012063711.1\|2618295_2618712_-	single-stranded DNA-binding protein	A0A0A8WIG9	Clostridium_phage	9.7e-24	45.5

DBSCAN-SWA_12

2622383 : 2632307

Clostridium_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049765342.1\|2622383_2622680_-	hypothetical protein	A0A0A7RUP4	Clostridium_phage	1.5e-18	60.0
WP_012063723.1\|2622898_2623117_-	hypothetical protein	NA	NA	NA	NA
WP_012063724.1\|2623128_2623506_-	DUF1064 domain-containing protein	A0A0A8WFH8	Clostridium_phage	2.0e-23	51.4
WP_083761100.1\|2623658_2624330_-	HNH endonuclease	A0A1S5SEZ9	Streptococcus_phage	5.5e-37	42.9
WP_012063726.1\|2624449_2624683_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.0e-18	62.2
WP_012063727.1\|2624682_2625435_-	cell division protein ZapE	A0A1B1P7U2	Bacillus_phage	2.5e-22	33.5
WP_049765259.1\|2625556_2626360_-	DnaD domain protein	NA	NA	NA	NA
WP_012063729.1\|2626359_2627100_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	3.6e-61	47.8
WP_012063730.1\|2627100_2627895_-	phage recombination protein Bet	A8ATK8	Listeria_phage	6.7e-66	55.7
WP_012063731.1\|2627916_2628117_-	hypothetical protein	NA	NA	NA	NA
WP_012063732.1\|2628131_2630084_-	AAA family ATPase	A0A0A0RNI0	Bacillus_phage	6.7e-67	32.3
WP_012063733.1\|2630080_2630407_-	hypothetical protein	NA	NA	NA	NA
WP_012063735.1\|2630544_2630697_-	hypothetical protein	NA	NA	NA	NA
WP_041720785.1\|2630715_2630922_-	hypothetical protein	NA	NA	NA	NA
WP_157047256.1\|2630896_2631058_-	hypothetical protein	NA	NA	NA	NA
WP_012063738.1\|2631092_2631317_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012063739.1\|2631516_2631879_+	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	2.1e-11	40.6
WP_012063740.1\|2631956_2632307_+	hypothetical protein	S6B1J4	Thermus_phage	5.4e-28	59.5

DBSCAN-SWA_13

3388306 : 3455733

Streptococcus_phage(21.05%)

tRNA,coat,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012064428.1\|3388306_3389170_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	6.7e-27	30.7
WP_012064429.1\|3389391_3390948_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	9.8e-53	28.6
WP_157047277.1\|3391040_3391331_-	hypothetical protein	NA	NA	NA	NA
WP_012064431.1\|3391509_3392586_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_012064433.1\|3393009_3393372_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012064435.1\|3393547_3393748_-	hypothetical protein	NA	NA	NA	NA
WP_012064436.1\|3393734_3394676_-	hypothetical protein	NA	NA	NA	NA
WP_041721783.1\|3394942_3397264_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_012064438.1\|3397260_3398103_+	xanthine dehydrogenase	NA	NA	NA	NA
WP_012064439.1\|3398095_3398560_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012064440.1\|3398638_3398911_-	hypothetical protein	NA	NA	NA	NA
WP_012064441.1\|3399304_3401485_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	2.2e-50	34.7
WP_012064442.1\|3401616_3402294_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012064443.1\|3402450_3404100_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.2e-62	34.9
WP_083761026.1\|3404561_3405233_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012064445.1\|3405439_3406138_-	hypothetical protein	NA	NA	NA	NA
WP_012064446.1\|3406319_3406817_-	hypothetical protein	NA	NA	NA	NA
WP_012064447.1\|3407036_3407267_-	hypothetical protein	NA	NA	NA	NA
WP_012064448.1\|3407831_3408038_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_012064449.1\|3408037_3408265_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012064450.1\|3408472_3409363_-	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	3.3e-53	38.3
WP_012064451.1\|3409665_3410181_-	hypothetical protein	NA	NA	NA	NA
WP_157047278.1\|3410347_3411313_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.1e-17	28.3
WP_157047279.1\|3411285_3411654_+	hypothetical protein	NA	NA	NA	NA
WP_012062311.1\|3411911_3413969_+	serine recombinase	NA	NA	NA	NA
WP_012062310.1\|3413926_3414370_-	reverse transcriptase	NA	NA	NA	NA
WP_012064453.1\|3415637_3416369_-	hypothetical protein	NA	NA	NA	NA
WP_012064454.1\|3416814_3417999_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_012064455.1\|3418351_3418576_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012064456.1\|3418572_3418965_+	type II toxin-antitoxin system death-on-curing family toxin	D0R0D2	Streptococcus_phage	1.5e-13	34.8
WP_012064457.1\|3419160_3419724_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012064458.1\|3420096_3420615_-	N-acetyltransferase	A0A1P8CWJ6	Bacillus_phage	2.4e-24	35.1
WP_012064459.1\|3420834_3421851_-	hypothetical protein	NA	NA	NA	NA
WP_041720955.1\|3422052_3422400_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012064461.1\|3422402_3422672_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	1.6e-08	39.1
WP_012064462.1\|3423178_3424765_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	8.2e-55	27.4
WP_012064463.1\|3424916_3426851_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	4.5e-47	29.4
WP_083761027.1\|3426920_3429326_-	homocysteine methyltransferase	NA	NA	NA	NA
WP_012064465.1\|3429267_3429948_-	methionine synthase	NA	NA	NA	NA
WP_012064466.1\|3429971_3430856_-	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_157047422.1\|3430869_3432150_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.7e-13	24.1
WP_157047423.1\|3433156_3433804_+	hypothetical protein	A0A0E3JT82	Bacillus_phage	3.5e-28	50.4
WP_012064469.1\|3433913_3437141_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_012064470.1\|3437185_3438268_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.1e-53	34.9
WP_012064471.1\|3438267_3439467_-	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	1.5e-29	27.8
WP_012064472.1\|3439381_3440332_-	acetylglutamate kinase	NA	NA	NA	NA
WP_012064473.1\|3440344_3441565_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_012064474.1\|3441593_3442634_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_012064475.1\|3442911_3443367_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_012064476.1\|3443515_3444088_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_012064477.1\|3444191_3445517_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_041720958.1\|3445760_3447194_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_012064479.1\|3447193_3448669_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_012064480.1\|3448708_3448993_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_041721788.1\|3449008_3450301_-\|tRNA	aspartate--tRNA(Asn) ligase	A0A2K9L424	Tupanvirus	1.8e-68	34.5
WP_012064482.1\|3450796_3451159_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_012064483.1\|3451228_3452485_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	8.7e-76	41.7
WP_041720960.1\|3452878_3454084_+\|tRNA	alanyl-tRNA editing protein AlaX-L	NA	NA	NA	NA
WP_012064485.1\|3454213_3455335_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	3.3e-74	42.7
WP_041720962.1\|3455331_3455733_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	2.3e-46	66.7

DBSCAN-SWA_14

3906737 : 3952364

Bacillus_phage(28.57%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012064872.1\|3906737_3907499_-\|transposase	transposase	NA	NA	NA	NA
WP_012064873.1\|3907812_3909300_-	xylulokinase	NA	NA	NA	NA
WP_012064874.1\|3909333_3910512_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_012064875.1\|3910667_3911981_-	xylose isomerase	NA	NA	NA	NA
WP_012064876.1\|3911955_3913182_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_012064877.1\|3913197_3914760_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-10	27.4
WP_012064878.1\|3914862_3915960_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012064879.1\|3916246_3917296_-	galactose mutarotase	NA	NA	NA	NA
WP_049765303.1\|3917442_3918000_-	hypothetical protein	NA	NA	NA	NA
WP_012064881.1\|3918355_3921295_-	copper amine oxidase	A0A142KBU8	Gordonia_phage	1.3e-05	30.6
WP_012064882.1\|3921710_3922817_-	response regulator	NA	NA	NA	NA
WP_012064883.1\|3922852_3924571_-	histidine kinase	NA	NA	NA	NA
WP_041721863.1\|3924799_3926176_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012064885.1\|3926239_3927991_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.1e-39	28.1
WP_012064886.1\|3927983_3929813_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-34	27.5
WP_012064887.1\|3930065_3931061_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041721865.1\|3931671_3931995_-	hypothetical protein	NA	NA	NA	NA
WP_012064890.1\|3932060_3932543_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012064892.1\|3933132_3933879_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012064893.1\|3933940_3934207_-	transcriptional regulator	NA	NA	NA	NA
WP_012064894.1\|3934392_3935514_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	3.3e-74	42.7
WP_041720962.1\|3935510_3935912_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	2.3e-46	66.7
WP_157047295.1\|3936003_3936357_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	7.7e-06	37.8
WP_011971585.1\|3936630_3938505_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_157047296.1\|3938913_3939123_-	hypothetical protein	NA	NA	NA	NA
WP_012064896.1\|3939124_3939868_-	hypothetical protein	NA	NA	NA	NA
WP_012064897.1\|3940077_3940377_-	ethanolamine utilization microcompartment protein EutM	NA	NA	NA	NA
WP_012064898.1\|3940400_3941057_-	phosphate propanoyltransferase	NA	NA	NA	NA
WP_012064899.1\|3941057_3942584_-	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
WP_012064900.1\|3942620_3943220_-	BMC domain-containing protein	NA	NA	NA	NA
WP_012064901.1\|3943236_3943917_-	hypothetical protein	NA	NA	NA	NA
WP_012064902.1\|3943962_3944511_-	BMC domain-containing protein	NA	NA	NA	NA
WP_012064903.1\|3944503_3945841_-	NADH dehydrogenase	NA	NA	NA	NA
WP_012064904.1\|3945856_3946120_-	EutN/CcmL family microcompartment protein	NA	NA	NA	NA
WP_012064905.1\|3946097_3946418_-	BMC domain-containing protein	NA	NA	NA	NA
WP_012064906.1\|3946431_3947277_-	ethanolamine utilization protein EutJ	NA	NA	NA	NA
WP_012064907.1\|3947258_3947897_-	hypothetical protein	NA	NA	NA	NA
WP_012064908.1\|3947907_3948357_-	hypothetical protein	NA	NA	NA	NA
WP_012064909.1\|3948353_3948707_-	BMC domain-containing protein	NA	NA	NA	NA
WP_012064910.1\|3948748_3949696_-\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA
WP_012064911.1\|3949826_3952364_-\|holin	choline trimethylamine-lyase	NA	NA	NA	NA

DBSCAN-SWA_15

4066800 : 4178486

107

Erysipelothrix_phage(67.24%)

terminase,holin,head,capsid,transposase,tail,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157047161.1\|4066800_4068375_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.5e-19	29.5
WP_012062302.1\|4068362_4069106_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.6e-48	40.7
WP_157047160.1\|4069124_4069319_+	hypothetical protein	NA	NA	NA	NA
WP_012065011.1\|4070749_4073707_-	AAA family ATPase	NA	NA	NA	NA
WP_012065012.1\|4073703_4074288_-	hypothetical protein	NA	NA	NA	NA
WP_012065013.1\|4074284_4076171_-	hypothetical protein	NA	NA	NA	NA
WP_012065014.1\|4076456_4077236_-	DUF4366 domain-containing protein	NA	NA	NA	NA
WP_012065015.1\|4077228_4077468_-	hypothetical protein	NA	NA	NA	NA
WP_012065016.1\|4077497_4078811_-	M23 family metallopeptidase	A0A7K9	Microcystis_virus	2.1e-16	42.5
WP_012065017.1\|4078892_4079423_-	hypothetical protein	NA	NA	NA	NA
WP_012065018.1\|4081842_4082256_-	PrgI family protein	E4ZFJ8	Streptococcus_phage	5.3e-22	46.0
WP_012065019.1\|4082268_4083138_-	hypothetical protein	NA	NA	NA	NA
WP_012065020.1\|4083529_4084306_-	hypothetical protein	NA	NA	NA	NA
WP_012065021.1\|4084308_4085145_-	hypothetical protein	NA	NA	NA	NA
WP_012065022.1\|4085343_4086234_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_157047313.1\|4086485_4086740_-	hypothetical protein	NA	NA	NA	NA
WP_012065024.1\|4089065_4089563_-	PcfB family protein	NA	NA	NA	NA
WP_012065025.1\|4089619_4090579_-	replication initiator protein A	A0A2P0VK56	Streptococcus_phage	5.0e-15	35.3
WP_012065026.1\|4090585_4091545_-	nuclease	NA	NA	NA	NA
WP_012065027.1\|4091531_4092320_-	ParA family protein	F0PIG8	Enterococcus_phage	8.8e-18	30.0
WP_012065029.1\|4092842_4093907_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012065030.1\|4094015_4095926_-	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.7e-120	40.6
WP_012065031.1\|4096054_4096213_-	hypothetical protein	NA	NA	NA	NA
WP_012065032.1\|4096289_4096628_-	winged helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	3.5e-08	42.6
WP_012065033.1\|4096842_4097322_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_157047314.1\|4097535_4099137_-	hypothetical protein	NA	NA	NA	NA
WP_012065036.1\|4099150_4099828_-	hypothetical protein	NA	NA	NA	NA
WP_012065037.1\|4099843_4100068_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012065038.1\|4100211_4101774_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	3.1e-240	88.3
WP_012065039.1\|4101775_4102192_-	recombinase	A0A2K5B2B3	Erysipelothrix_phage	3.8e-60	81.8
WP_012065040.1\|4102192_4103758_-	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	4.2e-237	79.3
WP_026478190.1\|4103819_4104035_-	hypothetical protein	A0A2K5B2B1	Erysipelothrix_phage	2.9e-24	78.6
WP_041721902.1\|4104090_4106031_-	XRE family transcriptional regulator	A0A2K5B2B0	Erysipelothrix_phage	1.7e-304	77.9
WP_012065043.1\|4106027_4106537_-	NUMOD4 domain-containing protein	W5RV07	Staphylococcus_phage	2.6e-18	34.5
WP_012065044.1\|4106610_4107162_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	9.3e-91	87.4
WP_012065045.1\|4107167_4108304_-	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	1.7e-192	85.7
WP_041721141.1\|4108296_4108614_-	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	2.9e-36	79.0
WP_012065048.1\|4108949_4109639_-	amidase	H7BVK7	unidentified_phage	5.9e-42	39.6
WP_012065049.1\|4109667_4110084_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.5e-45	63.7
WP_012065050.1\|4110167_4111241_-	hypothetical protein	NA	NA	NA	NA
WP_012065051.1\|4111252_4112380_-	hypothetical protein	NA	NA	NA	NA
WP_012065052.1\|4112398_4114669_-	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	1.4e-20	60.9
WP_012065054.1\|4114921_4115332_-	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	2.8e-39	68.0
WP_012065055.1\|4115346_4116228_-\|tail	phi13 family phage major tail protein	A0A2K5B294	Erysipelothrix_phage	9.4e-77	72.5
WP_012065056.1\|4116228_4116573_-	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	2.0e-22	47.3
WP_012065057.1\|4116569_4117001_-	hypothetical protein	A0A2K5B292	Erysipelothrix_phage	4.3e-43	60.8
WP_012065058.1\|4116993_4117326_-\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	2.2e-31	64.2
WP_012065059.1\|4117328_4117637_-\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	6.4e-41	79.4
WP_012065060.1\|4117655_4117868_-	hypothetical protein	A0A2K5B289	Erysipelothrix_phage	4.0e-18	68.9
WP_012065061.1\|4117880_4119089_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.3e-222	98.8
WP_012065062.1\|4119108_4119807_-\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	6.4e-113	97.0
WP_041721144.1\|4119806_4121060_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	8.5e-241	98.1
WP_012065064.1\|4121136_4121547_-	hypothetical protein	NA	NA	NA	NA
WP_012065065.1\|4121597_4121996_-	hypothetical protein	NA	NA	NA	NA
WP_041721147.1\|4122081_4123683_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.2e-311	98.1
WP_012065067.1\|4123789_4124014_-	hypothetical protein	A0A2K5B284	Erysipelothrix_phage	3.8e-35	93.2
WP_012065068.1\|4124028_4124385_-	hypothetical protein	A0A2K5B283	Erysipelothrix_phage	7.2e-60	94.9
WP_012065069.1\|4124495_4124807_-	hypothetical protein	A0A2K5B282	Erysipelothrix_phage	2.4e-51	95.1
WP_012065070.1\|4124809_4125052_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	3.1e-38	93.8
WP_012065071.1\|4125035_4125710_-	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	7.6e-111	89.4
WP_012065072.1\|4125792_4127028_-	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	3.0e-238	97.6
WP_012065073.1\|4127024_4128206_-	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	1.9e-218	96.2
WP_012065074.1\|4128227_4128779_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	6.9e-102	99.5
WP_012065075.1\|4128869_4129244_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	2.7e-65	95.0
WP_012065076.1\|4129375_4130014_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_012065077.1\|4130000_4130438_-	DUF1492 domain-containing protein	A0A2K5B275	Erysipelothrix_phage	1.0e-07	29.5
WP_012065078.1\|4130434_4130656_-	hypothetical protein	A0A2K5B274	Erysipelothrix_phage	1.4e-21	71.2
WP_012065080.1\|4132006_4132516_-	HNH endonuclease	A0A2I7QIM4	Bacillus_phage	2.4e-24	41.4
WP_012065081.1\|4132493_4132778_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	7.3e-39	90.0
WP_012065082.1\|4132928_4135277_-	virulence-associated E family protein	A0A2K5B271	Erysipelothrix_phage	0.0e+00	94.8
WP_012065083.1\|4135346_4135778_-	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	3.5e-61	77.1
WP_012065084.1\|4135764_4135986_-	hypothetical protein	A0A2K5B269	Erysipelothrix_phage	5.3e-29	80.8
WP_012065085.1\|4136000_4136663_-	Rha family transcriptional regulator	A0A2K5B268	Erysipelothrix_phage	6.1e-105	85.9
WP_012065086.1\|4136727_4137255_-	hypothetical protein	A0A2K5B267	Erysipelothrix_phage	1.2e-23	38.8
WP_012065087.1\|4137625_4139212_-	hypothetical protein	NA	NA	NA	NA
WP_012065088.1\|4139186_4139939_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_012065089.1\|4139931_4143057_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.2e-52	27.3
WP_012065090.1\|4143070_4144222_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012065091.1\|4144215_4146909_-	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	1.4e-62	30.7
WP_012065092.1\|4146940_4147153_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012065093.1\|4147471_4148830_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.0e-106	43.0
WP_012065094.1\|4149072_4150359_+	hypothetical protein	NA	NA	NA	NA
WP_012065095.1\|4150522_4151530_-	aldo/keto reductase	NA	NA	NA	NA
WP_012065096.1\|4151550_4151946_-	membrane protein FxsA	NA	NA	NA	NA
WP_041721154.1\|4152143_4152572_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_012065098.1\|4152752_4152989_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_012065099.1\|4153078_4154251_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_012065100.1\|4154250_4155960_-	PAS domain-containing protein	NA	NA	NA	NA
WP_012065101.1\|4156251_4158012_-	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	2.0e-09	38.0
WP_012065102.1\|4158028_4158988_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA
WP_012065103.1\|4159082_4159274_-	hypothetical protein	NA	NA	NA	NA
WP_012065104.1\|4159661_4163129_-	DNA polymerase III subunit alpha	A0A291AVA6	Streptomyces_phage	5.3e-224	40.9
WP_012065105.1\|4163134_4166068_-	AAA family ATPase	NA	NA	NA	NA
WP_012065106.1\|4166227_4167124_-	glutamate formimidoyltransferase	NA	NA	NA	NA
WP_012065107.1\|4167152_4169180_-	urocanate hydratase	NA	NA	NA	NA
WP_157047315.1\|4169395_4170067_+	AAA family ATPase	A0A2K9VCW4	Lactobacillus_phage	4.4e-10	28.6
WP_049765360.1\|4170075_4170750_+	deoxycytidine kinase	A0A0M3UL55	Enterococcus_phage	4.6e-23	37.1
WP_012065110.1\|4170836_4171307_-	hypothetical protein	NA	NA	NA	NA
WP_157047316.1\|4171475_4171991_-	hypothetical protein	NA	NA	NA	NA
WP_157047160.1\|4172065_4172260_-	hypothetical protein	NA	NA	NA	NA
WP_012062302.1\|4172278_4173022_-	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.6e-48	40.7
WP_157047161.1\|4173009_4174584_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.5e-19	29.5
WP_012065112.1\|4174632_4175313_-	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_041721912.1\|4175686_4176262_+	accessory gene regulator AgrB	NA	NA	NA	NA
WP_157047317.1\|4176661_4176826_-	hypothetical protein	NA	NA	NA	NA
WP_012065114.1\|4177198_4178053_-	hypothetical protein	NA	NA	NA	NA
WP_049765312.1\|4178156_4178486_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_16

4479273 : 4500031

Deep-sea_thermophilic_phage(21.05%)

terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011971574.1\|4479273_4479843_-	hypothetical protein	E5DV66	Deep-sea_thermophilic_phage	1.3e-10	49.1
WP_011971573.1\|4479853_4480483_-	hypothetical protein	A0A1L2JZ80	Aeribacillus_phage	1.5e-44	47.9
WP_011971572.1\|4480475_4481663_-	hypothetical protein	A0A1L2JY69	Aeribacillus_phage	2.9e-89	45.2
WP_157047130.1\|4481655_4482021_-	DUF2634 domain-containing protein	A0A1L2JY67	Aeribacillus_phage	3.7e-11	41.4
WP_011971570.1\|4482017_4482314_-	hypothetical protein	NA	NA	NA	NA
WP_011971569.1\|4482310_4483087_-	hypothetical protein	E5DV61	Deep-sea_thermophilic_phage	1.7e-42	34.7
WP_157047354.1\|4483073_4483400_-	hypothetical protein	E5DV60	Deep-sea_thermophilic_phage	3.3e-19	50.5
WP_011971567.1\|4483399_4483990_-	hypothetical protein	A0A2H4JD33	uncultured_Caudovirales_phage	4.7e-08	30.5
WP_011971566.1\|4484002_4485760_-\|tail	tail tape measure protein	A0A1C9M1I4	Mycobacterium_phage	1.8e-10	35.1
WP_011971565.1\|4485868_4486192_-	hypothetical protein	NA	NA	NA	NA
WP_011971564.1\|4486252_4486507_-	hypothetical protein	NA	NA	NA	NA
WP_011971563.1\|4486562_4486967_-	hypothetical protein	A0A1L2K2P1	Aeribacillus_phage	2.3e-14	36.2
WP_011971562.1\|4486978_4487983_-	DUF3383 family protein	E5DV56	Deep-sea_thermophilic_phage	1.5e-57	37.2
WP_011971561.1\|4487994_4488501_-	hypothetical protein	NA	NA	NA	NA
WP_011971560.1\|4488497_4488860_-	hypothetical protein	NA	NA	NA	NA
WP_011971559.1\|4488856_4489459_-	hypothetical protein	A8ATG9	Listeria_phage	9.7e-41	48.0
WP_011971558.1\|4489471_4489804_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_011971557.1\|4489806_4490139_-	hypothetical protein	NA	NA	NA	NA
WP_011971556.1\|4490154_4491069_-	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	5.4e-59	43.5
WP_011971555.1\|4491091_4491592_-	hypothetical protein	NA	NA	NA	NA
WP_041720248.1\|4491607_4492744_-	DUF2213 domain-containing protein	H2BCR3	Synechococcus_phage	1.2e-15	28.0
WP_011971553.1\|4492724_4493507_-\|head	head morphogenesis protein	A0A2I7RZ42	Vibrio_phage	5.1e-18	31.8
WP_157047330.1\|4493499_4494876_-	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	1.3e-64	34.6
WP_011971551.1\|4494866_4496324_-\|terminase	phage terminase large subunit	A0A090EUA8	Clostridium_phage	1.4e-109	46.6
WP_011971550.1\|4496580_4497069_-	antiterminator LoaP	NA	NA	NA	NA
WP_012065362.1\|4497082_4497256_-	hypothetical protein	NA	NA	NA	NA
WP_012065363.1\|4497230_4497650_-	DUF3486 family protein	A0A2H4JAV3	uncultured_Caudovirales_phage	1.7e-23	40.3
WP_157047353.1\|4497649_4497928_-	hypothetical protein	A0A2K9VH10	Faecalibacterium_phage	5.3e-10	37.2
WP_011971547.1\|4497944_4498238_-	hypothetical protein	NA	NA	NA	NA
WP_011971545.1\|4498889_4499204_-	hypothetical protein	NA	NA	NA	NA
WP_083760799.1\|4499257_4500031_-	N-acetylmuramoyl-L-alanine amidase	A0A2P1JU23	Anoxybacillus_phage	7.1e-28	37.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009633

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection