CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009698	Clostridium botulinum A str. Hall, complete sequence	9 crisprs	DEDDh,DinG,csa3,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	0	11	5	0

1. NC_009698

CRISPR-Cas detection and classification

Crispr_ID: NC_009698_1

• CRISPR_ID: NC_009698_1
• CRISPR_location: 1826755-1826972
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: cas3

Consensus repeat of NC_009698_1

Consensus_repeat	Method
ATAATAATATAAAAGATATATCT	CRISPRCasFinder

spacers of NC_009698_1

>1.1|1826778|43|NC_009698|CRISPRCasFinder
CCTATTAATAATATGGAAAAACTAAAGGATATAAATTTATCTA
>1.2|1826844|40|NC_009698|CRISPRCasFinder
TATTTAAAGGATTTAAACTTACATCATTTAGATCTAAGAG
>1.3|1826907|43|NC_009698|CRISPRCasFinder
GTCTTAAAAGATAAAACATCCTTGCAACATTTGTATTTAGCTA

CRISPR arrays and Neighbor proteins around NC_009698_1

CRISPR arrays

The CRISPR arrays of NC_009698_1

>merge|NC_009698|1|1826755-1826972|CRISPRCasFinder
ATAATAATATAGAAGATATATCTCCTATTAATAATATGGAAAAACTAAAGGATATAAATTTATCTAAAAATAAAGTAAAAGACATATCTTATTTAAAGGATTTAAACTTACATCATTTAGATCTAAGAGATAATAAAATAGAAAATATAGAAGTCTTAAAAGATAAAACATCCTTGCAACATTTGTATTTAGCTAATAATAGTATTAAGGATTTCTTA

>NC_009698|1|1|1826755-1826972|CRISPRCasFinder
ATAATAATATAGAAGATATATCT	CCTATTAATAATATGGAAAAACTAAAGGATATAAATTTATCTA
AAAATAAAGTAAAAGACATATCT	TATTTAAAGGATTTAAACTTACATCATTTAGATCTAAGAG
ATAATAAAATAGAAAATATAGAA	GTCTTAAAAGATAAAACATCCTTGCAACATTTGTATTTAGCTA
ATAATAGTATTAAGGATTTCTTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986365.1|1814803_1815658_+|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|225131
NC_009698.1|WP_011986371.1|1830602_1831532_+|glucosaminidase-domain-containing-protein	unknown	unknown	gnl|CDD|224619
NC_009698.1|WP_011986325.1|1809571_1811575_+|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|223910
NC_009698.1|WP_011986374.1|1834075_1835434_-|YjiH-family-protein	unknown	unknown	gnl|CDD|225851
NC_009698.1|WP_011986368.1|1819662_1821108_+|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl|CDD|223587
NC_009698.1|WP_011986369.1|1821261_1825719_+|DUF5050-domain-containing-protein	unknown	unknown	gnl|CDD|379846
NC_009698.1|WP_011986367.1|1818647_1819484_+|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|225543
NC_009698.1|WP_011986324.1|1808986_1809196_+|cold-shock-domain-containing-protein	unknown	unknown	gnl|CDD|278729
NC_009698.1|WP_011986375.1|1836839_1837169_-|HesB-like-protein	unknown	unknown	gnl|CDD|188182
NC_009698.1|WP_003363259.1|1836435_1836636_+|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl|CDD|365990
NC_009698.1|WP_003358892.1|1838086_1839067_+|tyrosine-recombinase-XerC	unknown	unknown	gnl|CDD|234698
NC_009698.1|WP_011986366.1|1817059_1818325_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
NC_009698.1|WP_012047671.1|1813774_1814233_+|YbaK/EbsC-family-protein	unknown	unknown	gnl|CDD|239825
NC_009698.1|WP_011986376.1|1839389_1839863_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986373.1|1832577_1833432_+|response-regulator	unknown	unknown	gnl|CDD|381097
NC_009698.1|WP_003403080.1|1836171_1836375_+|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl|CDD|365990
NC_009698.1|WP_004450459.1|1833431_1833893_+|chemotaxis-protein-CheX	unknown	unknown	gnl|CDD|224324
NC_009698.1|WP_011986363.1|1811855_1813436_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|237894
NC_009698.1|WP_003403076.1|1831657_1832173_-|ferritin	unknown	unknown	gnl|CDD|153113
NC_009698.1|WP_003403172.1|1815797_1816691_-|chemotaxis-protein-CheV	unknown	unknown	gnl|CDD|223905

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986368.1|1819662_1821108_+|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	7.3e-15	49.6	3.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_011986365.1|1814803_1815658_+|4Fe-4S-binding-protein	gnl|CDD|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	2.96712e-74
NC_009698.1|WP_011986371.1|1830602_1831532_+|glucosaminidase-domain-containing-protein	gnl|CDD|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	6.44229e-49
NC_009698.1|WP_011986325.1|1809571_1811575_+|methyl-accepting-chemotaxis-protein	gnl|CDD|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.04356e-54
NC_009698.1|WP_011986374.1|1834075_1835434_-|YjiH-family-protein	gnl|CDD|225851	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown].	5.74838e-117
NC_009698.1|WP_011986368.1|1819662_1821108_+|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.74715e-150
NC_009698.1|WP_011986369.1|1821261_1825719_+|DUF5050-domain-containing-protein	gnl|CDD|379846	pfam16472, DUF5050, Domain of unknown function (DUF5050).	4.97435e-50
NC_009698.1|WP_011986367.1|1818647_1819484_+|S1-RNA-binding-domain-containing-protein	gnl|CDD|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	3.91906e-82
NC_009698.1|WP_011986324.1|1808986_1809196_+|cold-shock-domain-containing-protein	gnl|CDD|278729	pfam00313, CSD, 'Cold-shock' DNA-binding domain.	2.82889e-20
NC_009698.1|WP_011986375.1|1836839_1837169_-|HesB-like-protein	gnl|CDD|188182	TIGR01911, conserved_protein, HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model. [Unknown function, General].	7.90839e-23
NC_009698.1|WP_003363259.1|1836435_1836636_+|alpha/beta-type-small-acid-soluble-spore-protein	gnl|CDD|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	6.55884e-25
NC_009698.1|WP_003358892.1|1838086_1839067_+|tyrosine-recombinase-XerC	gnl|CDD|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	5.17916e-140
NC_009698.1|WP_011986366.1|1817059_1818325_+|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	9.40869e-114
NC_009698.1|WP_012047671.1|1813774_1814233_+|YbaK/EbsC-family-protein	gnl|CDD|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	3.37813e-76
NC_009698.1|WP_011986373.1|1832577_1833432_+|response-regulator	gnl|CDD|381097	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY. The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.4036e-51
NC_009698.1|WP_003403080.1|1836171_1836375_+|alpha/beta-type-small-acid-soluble-spore-protein	gnl|CDD|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	1.88902e-25
NC_009698.1|WP_004450459.1|1833431_1833893_+|chemotaxis-protein-CheX	gnl|CDD|224324	COG1406, COG1406, Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion].	3.81904e-42
NC_009698.1|WP_011986363.1|1811855_1813436_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl|CDD|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_009698.1|WP_003403076.1|1831657_1832173_-|ferritin	gnl|CDD|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	1.58716e-79
NC_009698.1|WP_003403172.1|1815797_1816691_-|chemotaxis-protein-CheV	gnl|CDD|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.95044e-31

Protein sequences

>NC_009698.1|WP_011986369.1|1821261_1825719_+|DUF5050-domain-containing-protein
MIRGVFAIFSKKFVAKFLLYSSIVIIPMFNHNYVQAASSKQYETKYNVSLDKVWKIRFSREVDKATLNPENIKILDNQGKEMPIDLSLDVDKHYVKIALKSGTYNGVHYSGKYEKDKKYSLIVKEGLMSEPSKNKKSKNLAYETMMDFNTIGDNEYPGLPIEDGLIVIGDKAYSVGYLSKHSSIANEITSNGNYYIAYISKEYGEKIKQVLGNNTTKGNQERANKILYYAPNGNQYEYEWNEAFGEYKIVLPKAYVDVTPGVINGVVNLAVKQVKAVPGAKYFKLAHSNTIKPIGESISYSMTYPTEKLTILSADETPLATALVDVYLPKTGYVSLSSVNETLGNTAGNISNNGSAAMDLDFYVYYVNSADKNSLYRKTLTGRMDTQISLDKAQYINVIGDWIYYSNYNDNGKIYKMKKDGTKKQILCDDTATYITVSGGVVYYANQSDKGRLYKINTDGTIDGGASNRDPAGKVHGMPVMDDYGNYNKATDQANFINVVGDWIYYSNFSDGHKIYTVNKDGNIRRKVNDEWADGIQIVGAWAYYCSGSGAISKVRVDGTGSVIPLRGTTRKVDKGYHLNIVDGWLYYSNAEDGGKLYRIKEDGSGEKKKLADLATDYINIVGDTMYLISGGKTYTLPLNTDGTIKPTLVTKDNNGNTVVDVKDLNITVAYEDANKTIGELEAKYLPQKVAVFMKDDTVQQLPVDWDIKNRKYNGQGIYTYTGTVLGHGKQIKCTLTIPSEMLNATSIIEVYNNGPKNGSIMIKERSFGPSKQDQELKEKLKLAKRVEIGDVIKVYDNPNSEKPLGNIKVDANNANGPLVKSLDLDMYGRSFWITITRKNKAESKPTEVRQLGAAVLSGDVLDEDGEALGVDGRDFTVKGWNNPSIRDDGFISDTTEIAAQGTKSIYVIPGTGKLNMENQGVIPAGITSANYWNGGNARALLTNYDLLTNDSLKNKLKEGNYSIYVVVGYDGKAEEDVNGFGSPLVIGKTASIPKAMKATEEKIPKAPSVTKQYAKSGDTVKISGVTNEDEIYLAPEGASYIAKDITNKPYKSHDNLFFEDQSKSKEEREKEYEKSGKPSIEDGYQCKLVNGKIPQGVRSGKYKVYMVNAIGSSSPASGEIIVDNEDPVVRLDSAKQEDVIKTVTQNGTTTQETTGQKFKVNFAAFDNSFDNSIKEGITVSMARLDSPKSAIKAQEIKDKGNKTFEVIINDPHANLNDYAIYAEDKAGNIGQVNLKVQDPPANINNISLAIRTSNEGVDLVKSRLVGRTKYMTKDLTRASDNYEVTVDGVKYVLQEEALRNLGTSPSIDAFMNALMQAKQWDIANNKPMEDKPKLSSKVSIYKVNDVIYIEGNDNTPIQIEDKTKIDSDTAIVSNMIGLNPNENNTGENSKNQQYVINVTGTAQKNGKLKVCLAGKCFDINMVAGDSRTNIAAKIKEAINNNTILDSYQYPGTNVESNGSEVRLTRKSPGAVVPTFTVEYFNYDN
>NC_009698.1|WP_011986368.1|1819662_1821108_+|DEAD/DEAH-box-helicase
MNKLTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFYLLQKIIYKEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLVCTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIEDYIEKEIPKRKEPSSEEVAKGKKIFEENIKNRIKTKVPKDNKKQKDITKIYISAGRKKKIRPGDIVGAITSIEGINVDNIGIIDIQDNHSYVDILERKGDIVLKASEDMKIKGKKVRIQRAVK
>NC_009698.1|WP_011986367.1|1818647_1819484_+|S1-RNA-binding-domain-containing-protein
MIKLGEIQKLEIIREAPMGVYLNSKEDKSENDILLPGKQVPKDAKIGDEVEVFVYRDSEDRMIATINRPKITIGEIATLKVIEKTKMGAFLDWGLERDLFLPFKEQTYGIQEGMECLVYLYIDKSDRLCASMNVYRVLSTESPYKEDDEVKGFIYDIKREIGAFVAVDNEYHGLIPKNELYGKFRYGDIVEARVTKVKEDGKLDLSIRKKAYKQMDEDVDTILEKLNSNGGKLYLNDNSDPRAIKELLNMSKNAFKRAVGRLLKEGKIEFIEKGIKLK
>NC_009698.1|WP_011986366.1|1817059_1818325_+|DEAD/DEAH-box-helicase
MNNSFDTLNLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLMKDSVIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINIEEKKIYKGTLISSKGERSSQPKSKNKSTSAHKDNNKKKRSSSINKSKNNHKKKKY
>NC_009698.1|WP_003403172.1|1815797_1816691_-|chemotaxis-protein-CheV
METNILLESGTGEVEIIEFLVNNKHYAINVIKVKEVIEVDNVTKVPQSDPAIEGLILCREKIFPLIDLSYILGQKNTSKKKFKTIICEFNRVSVAFKIDEIVAVHRIGWDKILKPDDIAANPLVIGNILLKDKIILLLDFEKIVTDINPSTGISEERIVNVDYKDRSHIKVFLADDSSLIRKLLKDTLTKAGFKKLTIFDDGKQVLDKLLELVEKKGEDFTEDVQILITDIEMPQMDGHTLTRKVKEHPILKRLPVIIFSSLITKDLKHKGTSVGADEQLSKPDIGELVNIIDNYIE
>NC_009698.1|WP_011986365.1|1814803_1815658_+|4Fe-4S-binding-protein
MKMISKNEIAKLKGEGFLAQKQEGYFSVRILSRAGNFTSKQIIKLAEIADNYGKGYLGVTTRLATEIPWIRYEDIEAVKKEIVSSGMSHGGTGKRVRPLVSCKGTVCVHGLYDTQKLCGELHDKYFGYELPSKFKITLVGCPNNCAKASINDIGIMGQAYVEFDEEKCKVCGICTKSCRQKAVTVENKKIVYKKDLCVNCGKCATVCPFEAMTIKEQGLQVYLGGRFGREYRMGNRLKGLYKEEEIPALVQKIFDVYSEMGNPGERLAKMIERVGFDKVEEAIL
>NC_009698.1|WP_012047671.1|1813774_1814233_+|YbaK/EbsC-family-protein
MSLEGVKKQFTDENLNLKILEFDESTATVELAAKALGVEPGQIAKTLAFHVKGENMLIVAKGDARIDNKKFKAYFNGKGKMMAPEVVLEVTGHAIGGVCPFGLENPINIYLDQSLKEFEKVYPAAGNANTAVEVTLDELEGITKGLWIDVCK
>NC_009698.1|WP_011986363.1|1811855_1813436_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MITVTNLSLRYGDKKLFEDVNLKFTPGNCYGVIGANGAGKSTFLKILSGEIEANTGDVSIQPGVRMSILKQDHFKYDEFPVLETVIMGNERLYEIMKEKDAIYAKTPFTDEDGIKASELEGEFADLNGWEAEAEASSLLQGLGIGTELHEKNMKDLSGSEKVKVLLAQALFGNPGVLILDEPTNHLDIKSVNWLEEFLINFEGTVIVVSHDRHFLNKVCTHMADVDFGKIKLYVGNYDFWYESSQLALQMAKDQNKKKEEKIKELQEFIARFSANASKSKQATSRKKLLDKIDLDNIQPSSRKYPYIAFKPERKVGNDILRVEGLTKTIDGTKILDNISFIIGKDDKIAFVGDELSITTLFKIISGELEPDSGEYKWGITITNAYFPKDNSEYFNDVDLNLVDWLRQYSEEKSESYLRGFLGRMLFSGEEALKEVKVLSGGEKVRCMLSKMMLNNANVIILDQPTNHLDLESITALNNGLMDYKSNILFTSHDHQFIQTIANRIIEVSEAKFVDKKVTYDEYLESK
>NC_009698.1|WP_011986325.1|1809571_1811575_+|methyl-accepting-chemotaxis-protein
MKFKTMKGKMLTYFLSLFLIICIAISFMAYFMSKRMIERKASSLMSEVSRQAVQNIEARLNGTLDSIETVANMPTIKDPKLGWDKKKTILDEEIKLHGHVKMGIVGKDGQSIQTDGTTVNIKDRNYFKETMEGKRTISEPIVSKVDGKVVIIYTVPIKNGNTIMGALTAVREGNDISNISNSIKVGESGGAYLIDSTGTVIAHKNKESVIKRENSIKDAQSNEELKPIAAIEKSMIEGKEGIGQYKYKGAEKYISYSPMKSTGWSLAIYAPKNEILKEVSEITRNIIIVSILGIGIALVCIWFISTQISNNLISMRDSLNIVATGDLTTNVDSKIEKEKDEIGHMARALSKTVLSIGNMINSLKGSSFNIDDKANNLAAISEEFTATTENVSTAIQEVATGATNQAQALTEIVSMLNDFSDKINSTVNNIEEIDGMSKEIDEKANVSNKDMKELLNSIENLTKVFENFETKIWTMESNVQKINEITNLINDIAEKTNLLALNAAIEAARAGESGKGFAVVAEEIRKLAEMSRKSSEDIYTIVNGVLEDTKDMVKSSNEVNEKLNGQRSTADEAMNSFMEISKSVTNMIPKIRNINNSANIIEKNKNEILNKSETIASISQEISASAEEISASSEEMSASSEEVANTAQSLNDMTQDMLDEMNKFKTE
>NC_009698.1|WP_011986324.1|1808986_1809196_+|cold-shock-domain-containing-protein
MSMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKGPIAINVQKL
>NC_009698.1|WP_011986371.1|1830602_1831532_+|glucosaminidase-domain-containing-protein
MKKATGLILKLMILVLLAFTIFIMFNSLILNKKNERFLPENAMNIYIKAADEVSENKLQVNWKYIAALDGVKNKEDFSKANIEDSKVLGEKFLEISKSTKFKNTNYRLLTLDEVISKMSFTEEEKKNVHKYLDKLNNIYPITPDEYKRQFIDELIPISKELYDEYGILPSVTIGQAILESDWGRSELSKKGNNLFGIKATPSWQGKVLNMETSENYNDKIKDNFRYYSSKEDSIKDYANFLVKNKRYRENKVFRATEYKTQAKAIEKAGYSTKKDKDGNLLYSSLLGKIIREYNLQLIDSKTQEEISKK
>NC_009698.1|WP_003403076.1|1831657_1832173_-|ferritin
MLSEKLLEALNNQINFEFYSSYIYLAMASYAESEDLAGFANFFRVQAQEEIFHAMKFYDYVNQMGGRVILEKIDQPKAEYKNILECFEDGFNHEKIVTSRIYNLTDIATEEKEHATISLLKWFIDEQVEEENNFNTIIRKLRRAESNPAVLYMLDDELSARVFTPPTNTGA
>NC_009698.1|WP_011986373.1|1832577_1833432_+|response-regulator
MKDTKVVIVDDSPFSISIIKDILEENGLTVVGEAGNLEEVINVVKDKKPDIVTMDMTLPGTDGIECIKAINKINKNVKVIVISSMMDEEIVKKANKNKVCGYIQKPIDPEELIATIEKVVMKEELFLQLENDYFQIFKESFKDALNKFTKTTAEFSEDTKCTISETSRGMVVVIGIIGNFSGRMILDLSQETANSMVNFMLKREPKDMNEVLNVIGEFSNIVAGNACSMLNRKSKVFGLRIAPPSIFYGKSLNISQSLIKSLSVESNTEFGQIYMNVGFKRGES
>NC_009698.1|WP_004450459.1|1833431_1833893_+|chemotaxis-protein-CheX
MDAKYINPFIDSFYNVLPQLGFSNVTREDVAIKNNVESLGILINLGIVGDIRGNIVYNIQGENGKKIASKMMMGLPVEELNEMAQSALSELSNMLTANASINFSNIGVNVNISTPTLMYGQDIKIKLNTDKILNIKIVADDIPIDVNIAFEKI
>NC_009698.1|WP_011986374.1|1834075_1835434_-|YjiH-family-protein
METQKNNKYSFSELFKFICPSLIGFILFIIPISYDGEITIPIAVLSKIVLAGLGSILPQLMGIIICITFICTAITKIFKPKAILENKFFNNLFNVSPVWVLARILGFIFIVSTFFKIGPEWMWSKNTGGLLLYDLLPILFSVFIFAGMLLPLLLDFGLLEFVGALLTKVMRPIFNLPGRSSIDCMASWLGDGTIGVLLTSKQYEEGYYSEREAAVIGTTFSAVSITFSLVVISQVKLAHMFVPFYLTVCLSGIIAAILIPRIPPLSRKPDTYLNGGESKNSEALPEGYTPFTWGLEKAVAKAGSNGDPLNFIRQGLQNVLDMLLGVTPVVMAMGTSALILAEYTPLFKWLGLPFIPLLNLLKIPEAALASQTIVVGFADMFLPSVIAATIQSEMTRFIIACLSVTQLIYMSEVGGLLLGSKIPVSLKDLVIIFLERTLVTLPIITLVAHILF
>NC_009698.1|WP_003403080.1|1836171_1836375_+|alpha/beta-type-small-acid-soluble-spore-protein
MPSNKNSNNLVVPEAQQGLNQLKMEVANEVGIANYDSMDKGNLTSRQNGYVGGNMVKKMVEAYERNL
>NC_009698.1|WP_003363259.1|1836435_1836636_+|alpha/beta-type-small-acid-soluble-spore-protein
MANRNSNNLVVPEAKHGLNQLKMEVANEVGIANYDAVDKGNLTSRQNGYVGGNMVRKMVEAYERNL
>NC_009698.1|WP_011986375.1|1836839_1837169_-|HesB-like-protein
MILVNMSDLAYKEFKNFIKENNVNSNIFRIFLAGNGUGGPVFNIVLDEQTSEDLLSPIGELSFLVHKDLFSEFGGFIIKCAEENGKGGFTIDPIIQSENISCSTCSSCS
>NC_009698.1|WP_003358892.1|1838086_1839067_+|tyrosine-recombinase-XerC
MKYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAVKSNPLSDE
>NC_009698.1|WP_011986376.1|1839389_1839863_-|hypothetical-protein
MNRETCIFNYTKKCTDCGECEICDLDQNKKCDNCGECLQREGIDTQAIKIDEIKEDKNFVDKEDLKKVLKEDEKELESLKEFEEDLENEILQETQLLKDYDENFKEQGLYAIENVEGVQIEYIEDVDGLSELMEDESRLKKVAYEEFPGLIKIRENK

Crispr_ID: NC_009698_2

• CRISPR_ID: NC_009698_2
• CRISPR_location: 2230928-2231287
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 5 spacers

Consensus repeat of NC_009698_2

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder
ATTTAAATACATCTNATGTTAATGTTCAAC	CRT

spacers of NC_009698_2

>2.1|2230958|36|NC_009698|CRISPRCasFinder,CRT
TTATATGGTATTTAAGGTTATAGATAAATTAACTGG
>2.2|2231024|35|NC_009698|CRISPRCasFinder,CRT
CTTAAATATATAGGTATAGATCAAGACGCTAAAGA
>2.3|2231089|36|NC_009698|CRISPRCasFinder,CRT
TCTTAACCTTTAATTACATTATATATTATAAGTTCA
>2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT
ATTTCATCAAATCCGCATCAATAAATGAGATAAACT
>2.5|2231221|37|NC_009698|CRISPRCasFinder,CRT
TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA

CRISPR arrays and Neighbor proteins around NC_009698_2

CRISPR arrays

The CRISPR arrays of NC_009698_2

>merge|NC_009698|2|2230928-2231287|CRISPRCasFinder,CRT
GTTTAAATACATCCTATGTTAATGTTCAACTTATATGGTATTTAAGGTTATAGATAAATTAACTGGATTTAAATACACCTCATGTTAATGTTCAACCTTAAATATATAGGTATAGATCAAGACGCTAAAGAATTTAAATACATCTCATGTTAATGTTCAACTCTTAACCTTTAATTACATTATATATTATAAGTTCAATTTAAATACATCTTATGTTACTGTTCAACATTTCATCAAATCCGCATCAATAAATGAGATAAACTATTTAAATACATCTCATGTTAATGTTCAACTAAATTATACCTTAATGCTTATCAATATAGTCTTGTAATTTAAATACATCTCATGTTAATGTTCAAC

>NC_009698|2|2|2230928-2231287|CRISPRCasFinder
GTTTAAATACATCCTATGTTAATGTTCAAC	TTATATGGTATTTAAGGTTATAGATAAATTAACTGG
ATTTAAATACACCTCATGTTAATGTTCAAC	CTTAAATATATAGGTATAGATCAAGACGCTAAAGA
ATTTAAATACATCTCATGTTAATGTTCAAC	TCTTAACCTTTAATTACATTATATATTATAAGTTCA
ATTTAAATACATCTTATGTTACTGTTCAAC	ATTTCATCAAATCCGCATCAATAAATGAGATAAACT
ATTTAAATACATCTCATGTTAATGTTCAAC	TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA
ATTTAAATACATCTCATGTTAATGTTCAAC

>NC_009698|2|1|2230928-2231287|CRT
GTTTAAATACATCCTATGTTAATGTTCAAC	TTATATGGTATTTAAGGTTATAGATAAATTAACTGG
ATTTAAATACACCTCATGTTAATGTTCAAC	CTTAAATATATAGGTATAGATCAAGACGCTAAAGA
ATTTAAATACATCTCATGTTAATGTTCAAC	TCTTAACCTTTAATTACATTATATATTATAAGTTCA
ATTTAAATACATCTTATGTTACTGTTCAAC	ATTTCATCAAATCCGCATCAATAAATGAGATAAACT
ATTTAAATACATCTCATGTTAATGTTCAAC	TAAATTATACCTTAATGCTTATCAATATAGTCTTGTA
ATTTAAATACATCTCATGTTAATGTTCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379790
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	unknown	unknown	gnl|CDD|379767
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	unknown	unknown	gnl|CDD|227595
NC_009698.1|WP_003361919.1|2225344_2225629_-|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl|CDD|99905
NC_009698.1|WP_011986657.1|2227811_2228546_-|hypothetical-protein	unknown	unknown	gnl|CDD|236545
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238518
NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|172889
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_009698.1|WP_011986652.1|2220983_2221337_-|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl|CDD|379915
NC_009698.1|WP_011986654.1|2225657_2226095_-|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl|CDD|238129
NC_009698.1|WP_011986656.1|2227069_2227474_-|membrane-protein	unknown	unknown	unknown
NC_009698.1|WP_011986653.1|2221662_2223756_-|transcription-antiterminator	unknown	unknown	gnl|CDD|226234
NC_009698.1|WP_011986655.1|2226118_2226835_-|transaldolase	unknown	unknown	gnl|CDD|183481
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NC_009698.1|WP_003358211.1|2223967_2225332_-|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl|CDD|236502
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239241
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	gnl|CDD|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	1.22915e-13
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	gnl|CDD|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.00606e-25
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	gnl|CDD|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00289543
NC_009698.1|WP_003361919.1|2225344_2225629_-|PTS-sugar-transporter-subunit-IIB	gnl|CDD|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
NC_009698.1|WP_011986657.1|2227811_2228546_-|hypothetical-protein	gnl|CDD|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.9151e-11
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11537e-120
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	gnl|CDD|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	3.56433e-13
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	7.39905e-94
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.33103e-27
NC_009698.1|WP_011986652.1|2220983_2221337_-|zinc-ribbon-domain-containing-protein	gnl|CDD|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000160235
NC_009698.1|WP_011986654.1|2225657_2226095_-|PTS-sugar-transporter-subunit-IIA	gnl|CDD|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
NC_009698.1|WP_011986653.1|2221662_2223756_-|transcription-antiterminator	gnl|CDD|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.75036e-58
NC_009698.1|WP_011986655.1|2226118_2226835_-|transaldolase	gnl|CDD|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.96023e-99
NC_009698.1|WP_003358211.1|2223967_2225332_-|PTS-ascorbate-transporter-subunit-IIC	gnl|CDD|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.14321e-11
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	gnl|CDD|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.66461e-14

Protein sequences

>NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNSKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLMSPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase
MIIIITSVISFLLGSIPTGYFITKKACGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>NC_009698.1|WP_011986657.1|2227811_2228546_-|hypothetical-protein
MDKFRNMKKSHIALLVIMYMVLMGSFPRFTGWATIFSAIAVGGYFLKNKKDLKGLTRKNKNFIFAGIIILAIIGSLNVAVGNNIQNEKLMADKAKQEQEIKQEEQKKVEEKKLAEEQKRVQEEEAKKKAAEEKRKQEEEAKKKAAEEQKKQEELKRKQEEENKIKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCSVCNP
>NC_009698.1|WP_011986656.1|2227069_2227474_-|membrane-protein
MNILMLTCSIAIPVLMILIGILFKCNSYKKIDRTLDLIIPIATFFTGFSERDREHLYKNTNNLASVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPELLILVIVFISVEYILKRNFNKKISEQY
>NC_009698.1|WP_011986655.1|2226118_2226835_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>NC_009698.1|WP_011986654.1|2225657_2226095_-|PTS-sugar-transporter-subunit-IIA
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>NC_009698.1|WP_003361919.1|2225344_2225629_-|PTS-sugar-transporter-subunit-IIB
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>NC_009698.1|WP_003358211.1|2223967_2225332_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>NC_009698.1|WP_011986653.1|2221662_2223756_-|transcription-antiterminator
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFVTINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYAIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>NC_009698.1|WP_011986652.1|2220983_2221337_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFQRTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYANK
>NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVGSLPQYKDVIQKKEKKHLTVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDTIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADIHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGMGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAMGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein
MDEVHLFINKNKLSDEIKLSLKKNAALFIHPYNKIYKEVKKFTNSDVILVHPDRMNYALYNNIGKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVRCILLMENSFMIVTV
>NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase
MNIHETPTGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLRELYKKAPEAKVFESSIEKFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREKYLKNCAVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDKLLRKEEMDFRIKLYDFGELDKLILKAGFKGSHVFSDLNRRESIDKNTETFLYECYI
>NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator
MNYRKDIENCIEYIEEHIRESLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEGEKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKFYYKSENNLILSKFMNDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVESKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein
MKNKLKILIPLVLILSLNLIGCGVNSEKKSKENVKNSSKIETYDLIKHKGTYVGDNSSVGSIIKNLPANEYSAGFSLQTTKEPYEITVNYKTNKNLGEENYNKFWKDKKVEELLEKNAVILLSLIPNAEIIKFNVENIGEESYKYDRKNLGQKYGNLKDLFKDNDSLNKFLNN
>NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGSKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLIVGGGVAGMEAARVAAIRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYECILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGYTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHAKEIKSTSCIHTIVMADEDFTQQPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI

Crispr_ID: NC_009698_3

• CRISPR_ID: NC_009698_3
• CRISPR_location: 2237924-2238219
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 4 spacers
• Cas_protein_info: cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_009698_3

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder
ATTTAAATACATCTCATGTTAATGTTCAAC	CRT
ATTTAAATACATCTCATGTTAATGTTCAAC	PILER-CR

spacers of NC_009698_3

>3.1|2237954|36|NC_009698|CRISPRCasFinder,CRT
TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT
>3.2|2238020|36|NC_009698|CRISPRCasFinder,CRT
ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT
>3.3|2238086|38|NC_009698|CRISPRCasFinder,CRT
TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA
>3.4|2238154|35|NC_009698|CRISPRCasFinder,CRT
GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGA
>3.5|2237956|36|NC_009698|PILER-CR
TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT
>3.6|2238022|36|NC_009698|PILER-CR
ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT
>3.7|2238088|38|NC_009698|PILER-CR
TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA

CRISPR arrays and Neighbor proteins around NC_009698_3

CRISPR arrays

The CRISPR arrays of NC_009698_3

>merge|NC_009698|3|2237924-2238219|CRISPRCasFinder,CRT,PILER-CR
GCTTAAGTACATCTCATGTTAATGTTCAACTGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTTATTTAAATACATCTCATGTTAATGTTCAACATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGTATTTAAATACATCTCATGTTAATGTTCAACTTAAGTATGATAATATAAAACCTTGGTAAATATATTAAATTTAAATACATTTCATGTTAATGTTCAACGAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGAATTTAAATACATCTCATGTTAATGTTCAACC

>NC_009698|3|3|2237924-2238219|CRISPRCasFinder
GCTTAAGTACATCTCATGTTAATGTTCAAC	TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT
ATTTAAATACATCTCATGTTAATGTTCAAC	ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT
ATTTAAATACATCTCATGTTAATGTTCAAC	TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA
ATTTAAATACATTTCATGTTAATGTTCAAC	GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGA
ATTTAAATACATCTCATGTTAATGTTCAACC

>NC_009698|3|2|2237924-2238218|CRT
GCTTAAGTACATCTCATGTTAATGTTCAAC	TGAACTTATGAAAGAACTAGAGTGTGGAGAACCCTT
ATTTAAATACATCTCATGTTAATGTTCAAC	ATTAGGTTTGCCACCACATTCCGTTACTGCAGTAGT
ATTTAAATACATCTCATGTTAATGTTCAAC	TTAAGTATGATAATATAAAACCTTGGTAAATATATTAA
ATTTAAATACATTTCATGTTAATGTTCAAC	GAAAAAGGTAAATTAGCAAGTGCAAAAGATTTAGA
ATTTAAATACATCTCATGTTAATGTTCAAC

>NC_009698|3|1|2237926-2238153|PILER-CR
TTAAGTACATCTCATGTTAATGTTCAACTG	AACTTATGAAAGAACTAGAGTGTGGAGAACCCTTAT
TTAAATACATCTCATGTTAATGTTCAACAT	TAGGTTTGCCACCACATTCCGTTACTGCAGTAGTAT
TTAAATACATCTCATGTTAATGTTCAACTT	AAGTATGATAATATAAAACCTTGGTAAATATATTAAAT
TTAAATACATTTCATGTTAATGTTCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379790
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	unknown	unknown	gnl|CDD|227595
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238518
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|172889
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	unknown	unknown	gnl|CDD|379767
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239241
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	gnl|CDD|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	1.22915e-13
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.14321e-11
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	gnl|CDD|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00289543
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	gnl|CDD|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	3.56433e-13
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11537e-120
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	7.39905e-94
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.33103e-27
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.66461e-14
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.96023e-99
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	gnl|CDD|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.00606e-25
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	gnl|CDD|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12

Protein sequences

>NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein
MKNKLKILIPLVLILSLNLIGCGVNSEKKSKENVKNSSKIETYDLIKHKGTYVGDNSSVGSIIKNLPANEYSAGFSLQTTKEPYEITVNYKTNKNLGEENYNKFWKDKKVEELLEKNAVILLSLIPNAEIIKFNVENIGEESYKYDRKNLGQKYGNLKDLFKDNDSLNKFLNN
>NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator
MNYRKDIENCIEYIEEHIRESLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEGEKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKFYYKSENNLILSKFMNDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVESKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLRELYKKAPEAKVFESSIEKFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREKYLKNCAVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDKLLRKEEMDFRIKLYDFGELDKLILKAGFKGSHVFSDLNRRESIDKNTETFLYECYI
>NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase
MNIHETPTGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein
MDEVHLFINKNKLSDEIKLSLKKNAALFIHPYNKIYKEVKKFTNSDVILVHPDRMNYALYNNIGKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVRCILLMENSFMIVTV
>NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADIHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGMGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAMGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVGSLPQYKDVIQKKEKKHLTVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDTIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNSKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLMSPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase
MIIIITSVISFLLGSIPTGYFITKKACGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGSKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLIVGGGVAGMEAARVAAIRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYECILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGYTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHAKEIKSTSCIHTIVMADEDFTQQPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLEEIDNEKVTNFVNGLINASMSNPSIGYFFMFLIYMTPILNLLLLIKGIVNYFNKAEG
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK

Crispr_ID: NC_009698_4

• CRISPR_ID: NC_009698_4
• CRISPR_location: 2238499-2238595
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 1 spacers
• Cas_protein_info: cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_009698_4

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder

spacers of NC_009698_4

>4.1|2238529|36|NC_009698|CRISPRCasFinder
ATGTTGTAAATGTTGTGGTATAACAGAATGTAAATA

CRISPR arrays and Neighbor proteins around NC_009698_4

CRISPR arrays

The CRISPR arrays of NC_009698_4

>merge|NC_009698|4|2238499-2238595|CRISPRCasFinder
GCTTAAATACATCTTATGTTATTGTTCAACATGTTGTAAATGTTGTGGTATAACAGAATGTAAATAATTTAAATACATCTCATGTTAATGTTCAACC

>NC_009698|4|4|2238499-2238595|CRISPRCasFinder
GCTTAAATACATCTTATGTTATTGTTCAAC	ATGTTGTAAATGTTGTGGTATAACAGAATGTAAATA
ATTTAAATACATCTCATGTTAATGTTCAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379790
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	unknown	unknown	gnl|CDD|227595
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238518
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|172889
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	unknown	unknown	gnl|CDD|379767
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239241
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	gnl|CDD|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	1.22915e-13
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.14321e-11
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	gnl|CDD|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00289543
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	gnl|CDD|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	3.56433e-13
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11537e-120
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	7.39905e-94
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.33103e-27
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.66461e-14
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.96023e-99
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	gnl|CDD|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.00606e-25
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	gnl|CDD|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12

Protein sequences

>NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein
MKNKLKILIPLVLILSLNLIGCGVNSEKKSKENVKNSSKIETYDLIKHKGTYVGDNSSVGSIIKNLPANEYSAGFSLQTTKEPYEITVNYKTNKNLGEENYNKFWKDKKVEELLEKNAVILLSLIPNAEIIKFNVENIGEESYKYDRKNLGQKYGNLKDLFKDNDSLNKFLNN
>NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator
MNYRKDIENCIEYIEEHIRESLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEGEKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKFYYKSENNLILSKFMNDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVESKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLRELYKKAPEAKVFESSIEKFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREKYLKNCAVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDKLLRKEEMDFRIKLYDFGELDKLILKAGFKGSHVFSDLNRRESIDKNTETFLYECYI
>NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase
MNIHETPTGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein
MDEVHLFINKNKLSDEIKLSLKKNAALFIHPYNKIYKEVKKFTNSDVILVHPDRMNYALYNNIGKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVRCILLMENSFMIVTV
>NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADIHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGMGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAMGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVGSLPQYKDVIQKKEKKHLTVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDTIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNSKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLMSPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase
MIIIITSVISFLLGSIPTGYFITKKACGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGSKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLIVGGGVAGMEAARVAAIRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYECILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGYTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHAKEIKSTSCIHTIVMADEDFTQQPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLEEIDNEKVTNFVNGLINASMSNPSIGYFFMFLIYMTPILNLLLLIKGIVNYFNKAEG
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK

Crispr_ID: NC_009698_5

• CRISPR_ID: NC_009698_5
• CRISPR_location: 2238712-2239009
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 4 spacers
• Cas_protein_info: cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_009698_5

Consensus_repeat	Method
TATTTAAATACATNNTATGTTACTGTTCAAC	CRT
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder

spacers of NC_009698_5

>5.1|2238743|36|NC_009698|CRT
TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTA
>5.2|2238810|35|NC_009698|CRT
AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAA
>5.3|2238876|37|NC_009698|CRT
ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAA
>5.4|2238944|34|NC_009698|CRT
GATAAAACCAATCTATTAACCTGTATAACTGCCT
>5.5|2238743|37|NC_009698|CRISPRCasFinder
TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTAT
>5.6|2238810|36|NC_009698|CRISPRCasFinder
AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAAA
>5.7|2238876|38|NC_009698|CRISPRCasFinder
ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAAT
>5.8|2238944|35|NC_009698|CRISPRCasFinder
GATAAAACCAATCTATTAACCTGTATAACTGCCTT

CRISPR arrays and Neighbor proteins around NC_009698_5

CRISPR arrays

The CRISPR arrays of NC_009698_5

>merge|NC_009698|5|2238712-2239009|CRT,CRISPRCasFinder
TGCTTAAATACATATCATGTTAAGGTTCAACTGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTATATTTAAATACATTCTATATTACTGTTCAACAAATGTAGATAGGCAATTTTTTAAAGAAAATAGAAAATTTAAATACATCTTATGTTACTGTTCAACACGAATAGGGGGTGATAAATATTGTTATTTGGACAAATATTTAAATACATCCTATGTTACTGTTCAACGATAAAACCAATCTATTAACCTGTATAACTGCCTTATTTAAATACATCCTATGTTACTGTTCAACC

>NC_009698|5|3|2238712-2239008|CRT
TGCTTAAATACATATCATGTTAAGGTTCAAC	TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTA
TATTTAAATACATTCTATATTACTGTTCAAC	AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAA
AATTTAAATACATCTTATGTTACTGTTCAAC	ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAA
TATTTAAATACATCCTATGTTACTGTTCAAC	GATAAAACCAATCTATTAACCTGTATAACTGCCT
TATTTAAATACATCCTATGTTACTGTTCAAC

>NC_009698|5|5|2238713-2239009|CRISPRCasFinder
GCTTAAATACATATCATGTTAAGGTTCAAC	TGGTAAGCAAAGCATATCTTCAGAGTTGTTTATCTAT
ATTTAAATACATTCTATATTACTGTTCAAC	AAATGTAGATAGGCAATTTTTTAAAGAAAATAGAAA
ATTTAAATACATCTTATGTTACTGTTCAAC	ACGAATAGGGGGTGATAAATATTGTTATTTGGACAAAT
ATTTAAATACATCCTATGTTACTGTTCAAC	GATAAAACCAATCTATTAACCTGTATAACTGCCTT
ATTTAAATACATCCTATGTTACTGTTCAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379790
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	unknown	unknown	gnl|CDD|227595
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238518
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|172889
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	unknown	unknown	gnl|CDD|379767
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239241
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	gnl|CDD|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	1.22915e-13
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.14321e-11
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	gnl|CDD|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00289543
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	gnl|CDD|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	3.56433e-13
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11537e-120
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	7.39905e-94
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.33103e-27
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.66461e-14
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.96023e-99
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	gnl|CDD|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.00606e-25
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	gnl|CDD|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12

Protein sequences

>NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein
MKNKLKILIPLVLILSLNLIGCGVNSEKKSKENVKNSSKIETYDLIKHKGTYVGDNSSVGSIIKNLPANEYSAGFSLQTTKEPYEITVNYKTNKNLGEENYNKFWKDKKVEELLEKNAVILLSLIPNAEIIKFNVENIGEESYKYDRKNLGQKYGNLKDLFKDNDSLNKFLNN
>NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator
MNYRKDIENCIEYIEEHIRESLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEGEKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKFYYKSENNLILSKFMNDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVESKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLRELYKKAPEAKVFESSIEKFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREKYLKNCAVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDKLLRKEEMDFRIKLYDFGELDKLILKAGFKGSHVFSDLNRRESIDKNTETFLYECYI
>NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase
MNIHETPTGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein
MDEVHLFINKNKLSDEIKLSLKKNAALFIHPYNKIYKEVKKFTNSDVILVHPDRMNYALYNNIGKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVRCILLMENSFMIVTV
>NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADIHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGMGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAMGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVGSLPQYKDVIQKKEKKHLTVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDTIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNSKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLMSPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase
MIIIITSVISFLLGSIPTGYFITKKACGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGSKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLIVGGGVAGMEAARVAAIRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYECILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGYTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHAKEIKSTSCIHTIVMADEDFTQQPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLEEIDNEKVTNFVNGLINASMSNPSIGYFFMFLIYMTPILNLLLLIKGIVNYFNKAEG
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK

Crispr_ID: NC_009698_6

• CRISPR_ID: NC_009698_6
• CRISPR_location: 2239283-2239378
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 1 spacers
• Cas_protein_info: cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_009698_6

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder

spacers of NC_009698_6

>6.1|2239313|36|NC_009698|CRISPRCasFinder
AGGTGGAGTATTAGAAGATATGCATCTATATAAAGA

CRISPR arrays and Neighbor proteins around NC_009698_6

CRISPR arrays

The CRISPR arrays of NC_009698_6

>merge|NC_009698|6|2239283-2239378|CRISPRCasFinder
GCTTAAATACATCTCATGTTAATGTTCAACAGGTGGAGTATTAGAAGATATGCATCTATATAAAGAATTTAAATACATCCTATGTTATTGTTCAAT

>NC_009698|6|6|2239283-2239378|CRISPRCasFinder
GCTTAAATACATCTCATGTTAATGTTCAAC	AGGTGGAGTATTAGAAGATATGCATCTATATAAAGA
ATTTAAATACATCCTATGTTATTGTTCAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379790
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	unknown	unknown	gnl|CDD|227595
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	unknown	unknown	gnl|CDD|238518
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|172889
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	unknown	unknown	gnl|CDD|379767
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239241
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein	gnl|CDD|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	1.22915e-13
NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.14321e-11
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein	gnl|CDD|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00289543
NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase	gnl|CDD|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	3.56433e-13
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.11537e-120
NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	7.39905e-94
NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.33103e-27
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.66461e-14
NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.96023e-99
NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein	gnl|CDD|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.00606e-25
NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase	gnl|CDD|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12

Protein sequences

>NC_009698.1|WP_011986665.1|2237183_2237705_+|DUF4825-domain-containing-protein
MKNKLKILIPLVLILSLNLIGCGVNSEKKSKENVKNSSKIETYDLIKHKGTYVGDNSSVGSIIKNLPANEYSAGFSLQTTKEPYEITVNYKTNKNLGEENYNKFWKDKKVEELLEKNAVILLSLIPNAEIIKFNVENIGEESYKYDRKNLGQKYGNLKDLFKDNDSLNKFLNN
>NC_009698.1|WP_011986664.1|2235992_2236883_-|AraC-family-transcriptional-regulator
MNYRKDIENCIEYIEEHIRESLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEGEKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKFYYKSENNLILSKFMNDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVESKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_009698.1|WP_011986663.1|2235245_2235986_-|class-I-SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLRELYKKAPEAKVFESSIEKFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREKYLKNCAVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDKLLRKEEMDFRIKLYDFGELDKLILKAGFKGSHVFSDLNRRESIDKNTETFLYECYI
>NC_009698.1|WP_011986662.1|2233736_2235143_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NC_009698.1|WP_021134338.1|2233489_2233663_+|M24-family-metallopeptidase
MNIHETPTGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NC_009698.1|WP_079995891.1|2233043_2233406_+|aminopeptidase-P-family-N-terminal-domain-containing-protein
MDEVHLFINKNKLSDEIKLSLKKNAALFIHPYNKIYKEVKKFTNSDVILVHPDRMNYALYNNIGKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVRCILLMENSFMIVTV
>NC_009698.1|WP_011986661.1|2232114_2232729_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADIHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGMGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAMGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_009698.1|WP_012047734.1|2231577_2232072_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVGSLPQYKDVIQKKEKKHLTVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDTIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_009698.1|WP_011986659.1|2230306_2230795_+|lipoprotein
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNSKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLMSPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>NC_009698.1|WP_011986658.1|2228885_2229479_-|glycerol-3-phosphate-acyltransferase
MIIIITSVISFLLGSIPTGYFITKKACGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLKGIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>NC_009698.1|WP_011986666.1|2239668_2241666_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGSKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLIVGGGVAGMEAARVAAIRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYECILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NC_009698.1|WP_011986667.1|2241762_2242560_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGYTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHAKEIKSTSCIHTIVMADEDFTQQPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NC_009698.1|WP_011986668.1|2242607_2242901_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLEEIDNEKVTNFVNGLINASMSNPSIGYFFMFLIYMTPILNLLLLIKGIVNYFNKAEG
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK

Crispr_ID: NC_009698_7

• CRISPR_ID: NC_009698_7
• CRISPR_location: 2252865-2253023
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 2 spacers
• Cas_protein_info: cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

Consensus repeat of NC_009698_7

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder

spacers of NC_009698_7

>7.1|2252895|35|NC_009698|CRISPRCasFinder
GGTTACTGGCTTTCTAATACATATAATTAAATTAG
>7.2|2252960|33|NC_009698|CRISPRCasFinder
CTATATAAAAGCCATTGGGAATTTTGTTTATAC

CRISPR arrays and Neighbor proteins around NC_009698_7

CRISPR arrays

The CRISPR arrays of NC_009698_7

>merge|NC_009698|7|2252865-2253023|CRISPRCasFinder
ATTTAAATACATCTCATGTTAATGTTCAACGGTTACTGGCTTTCTAATACATATAATTAAATTAGATTTAAATACATCTCATGTTAATGTTCAACCTATATAAAAGCCATTGGGAATTTTGTTTATACATTTAAATACATCTCATGTTAATGTTCAACC

>NC_009698|7|7|2252865-2253023|CRISPRCasFinder
ATTTAAATACATCTCATGTTAATGTTCAAC	GGTTACTGGCTTTCTAATACATATAATTAAATTAG
ATTTAAATACATCTCATGTTAATGTTCAAC	CTATATAAAAGCCATTGGGAATTTTGTTTATAC
ATTTAAATACATCTCATGTTAATGTTCAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl|CDD|224089
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl|CDD|273848
NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	unknown	unknown	gnl|CDD|238623
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|369561
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl|CDD|223461
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	unknown	unknown	gnl|CDD|274468
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	unknown	unknown	gnl|CDD|378897
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	unknown	unknown	gnl|CDD|213357
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|313108
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	5.1e-28	93.5	8.5
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	gnl|CDD|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.63467e-90
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.52022e-22
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	gnl|CDD|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.34486e-25
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	gnl|CDD|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	4.27346e-88
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.97681e-118
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	gnl|CDD|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	2.29895e-84
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	gnl|CDD|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.61201e-137
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	gnl|CDD|213357	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family. A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	0.00264746
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	0.000420917
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.23324e-15

Protein sequences

>NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
>NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein
MGKTLRFEIVSGVNKGYFHTNSQSESLDLVGGIWQKIAKEEFEKSNIYVSAVIKPSKTVYNQEWGCPENGEETVVLTGVANEEFVDDIEKWKDTVIKLAKELKNQMKQSTLTCEFIETELHYFK
>NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein
MTKEIISSHIFVFPFRWDVVKDEACFDTCIDSRLNTEKFIKYLKDNNQWEEDINISNIVENKEVENDLDYNTYAYFYDNVRKAIYGNPNSIKKNKNISVDLKNSKYYAGKLFNKKISNTIVRCLNYKNIDANSIYEIHVEKKDDKGTIVFDEHYKLKIKSIKLKVYDTGVATLSYFLNNYEWKNKEDILRINDYGRRIYPQHIPLDTVRSNFLAKKLSLKLKKRIIEEEFDYEIKEKPTKISKTIINILGEKFVSTEKELRYKSLSKEEIIFVKPVIDDRMFVICYYNNGFHSRVLTKYDKDEYLKNDFWYQFLFVDNDGATCKDEEMTKELLLKSTYTRWKSYGTLFGISRYSFVILCDESGFSKDVLYNHINIIYYEMILLALVQRASILRFSDETSRIASFERKNIYEQIKKLQEYYIRFVNTIYFREVTAQEQGIELYDKIVELMRIDTEVKRLDEEIDEIQRYINLETNDRTNRLLNVITFVGIGISVISLISSLFSNSKQIGDLTWLVTWQYVPFVMVLLVISVIKNYVNDNKVIKIIMWVITLLAIYIVLDYKFIKLFIK
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase
MKKRFNVTGTCIPEKHYMVDISKKLDSILKLIDNEEYFIINRPRQYGKTTTLYMLEKRLNKMEEYLPIKISFEAIDTEGYSEAKKFLSSIMMQIINYFRFSTKKEIYKFVKRHENKVNTMNEFNRFITDLIEFTEKKVVLIIDEVDKSSNNQLFLDFLGMLRSKYLLRSEGKDYTFHSVILAGVHDVKQASKIYDFDMIAYSCEEISRRFLTKDLKIRSDEEHKYNSPWNIASDFDVDMSFSRSEIKTMLDDYVENKKVALDKEYFAEKLYFYTSGYPFLVSKLCKIIDEKIMDENKLEWKKEYLEIAVKELLKDSNTNFDSLIKNIENNEGLSRLVDNLLIKGVRINFNIHNPDINLGCLYGIFKDDKGNLKINNRIYEQLIYDYRISKIQTSSNFYNYNSKENFIDTNGDLNIRKVLLKFQEFMQHEYSKKRKGFLEEDGRLVFLAFLSPIINGIGFAFKEVKAGEEKRFEIVITYNKKMYILELKIWRGEEYHKKGLIQLAEYLEQYKLDKGYLLIFDLRKSTNLIGEVEENYIGIENHSKKIIQVYC
>NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase
MITFSPFPVIETKNLFLRRMTNDDTHDIFQLRKDPKMNYYTDTRLDENPEETKSYIDKMNKGIDEVEWIVWAIEHRQSKKVIGTISIWNINLEQRNAELGYGITPAYQNKGLMKEALLSVADYGFNVMNLSN
>NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein
MNIKIDKNSLITITQQLVHYFSDRIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLSLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSNRKAELLDIARYNDILIVEDDPWNEISYKREKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQSNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein
MSKLNPEKLSVEFRDGVTGTEPILGRRYTLTHSDITAELFLTIGLTYAYDKIDVMRDEVLGEWIEKEKNYLFHVYLHVDGNNPIVTGVRNHIFRRELPLALEAIRYGDRKFFISHPKLDNSPVIVHFISSYPSFDRIEKWGTFSDYSLKKR
>NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator
MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDSFKNDFGFNDTDTVLVLKDILYQKYKMEKKKKVDNSKEKI
>NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase
MKKVIKVVSVILVILVIAGFFIIKNLTETKDGKLNMYVAANLQLYKILNPKSLNNKSIEETRGALNKQSTRWSNKPIPFSNIKNLDIKMNNEKIPVRIYTPEKGSNFPIIIYSHGGFWIGGNVDTIDGVCRKLSQNTKAIVISVNYRLAPENPFPAGLNDVYNVLQWTYKNGKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPSITCQVLIYPSTNIFKLNSKSWSHFSNSFNVSTEDMEKYISIYAPKKEDRKSPYASPLLSKDLRKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKAEVTRYKGITHGFITMDKITNKADEALNQISLYIQKEFQK
>NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase
MNQILIKNGYIITMDCSKRIFEKGDILVEDSKIIAIGNVESELIKSNVEIIDANGKIIMPGLVNTHVHLSQQLARGLADDVDLLTWLRKRIWPYESNMDLEDSYISSLACCTELIRSGVTTFCEAGGQEVDGMGKAVEEAGLRGILCRSTMDCGDGLPLKWQETTEESLQKQVELLERWNGKGDGRIKYWFGLRTIFNTTDKLITKTKELADKYKVGIHMHVAEIEEEVRYAEATRGETTVQHLAKLGVLDKNFLAVHTVWLTEQEIDLFKLHNVKVSHNPGAAMKVVLGFAHIPEMLEKGINVSIGTDGAPSNNRMDMFDEMHLTSLIHKGRRLNPKVVPADEVLEMATMNGAKCALWEDEIGSLEVGKKADLIIINPKSIGSLPMHDPIGNIVYSMHSSDVESSMCNGKWLMKNKVLLTIDEEDIIREAQEKATALVKKAGIVLPKRF
>NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease
MKNTKDTNLIVGIDEKISLRYAFFLGLQHVFAMDLYIVPIILAGILSLDAQNTAYFIQMSFIAAGIATLIQTGLCMRLPIMQGPSYIPIGALAAIGSKLGLQAMVGSLIPGSLFLMILGYPLRFLSKIISKFIPHIVGGTVIVIVGISLMPVAMTNIFTAPGNLKINCILALISSALLVGCMMIGRKSNKFGKAVRLTSVMISLIGGTIAASLLGVVDFTPVTKAAWFSFPKLLPFGKPVFDLKAILTMLFIYAVILVETSGTWFAVSAVTGSELTDEGLNRGAVGEGIGCFVGALFGGTPMTGYSTNAGIIAVTGVGSRMAIIAGGIILVALGMLPKLMNVIACIPSAVVSGVFAVVCVIIAMNGFKSIQHEEFDERNMLLIGLPILLALGTTVLPKDILNSLPSLANYIFSSGITVGALAAVILNILLPKAPVEVSKSQEYEEAV
>NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein
MSNKRNLQSIRSFYLCILIFNIVYSSIFHLNNKGFNIKLFGDLTMRSVVLFTLNSILFLCVAIAVEKKINIDEEIKTQVSMRIKPLYLVNMFFITYILVCIFLLKNLDVILSSFVMEIIYIGILILTKKIIALELTDRQLQWQKACGYIDESCEKSSFLWKFKIWYSPHINVPFKNRWKGLSRLLYDLALVYGIFISKGNLFSLPLLILLFPDVLSWLEGLLGLQTSLTGMCTGITEHHNKNSHVIYHKVYVTDYKNKREITFYVDGPLFIHENSHMTVVHGTFSKRVLYVEGLNLDIR

Crispr_ID: NC_009698_8

• CRISPR_ID: NC_009698_8
• CRISPR_location: 2253927-2254156
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 3 spacers
• Cas_protein_info: cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

Consensus repeat of NC_009698_8

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder
TTTAAATACATCTCATGTTAATGTTCAAT	CRT
GTTTAAATACATCTCATGTTAATGTTCAATC	PILER-CR

spacers of NC_009698_8

>8.1|2253957|36|NC_009698|CRISPRCasFinder
AATAGAGTATTCAGATGAATATAAATTCTTGGAAGA
>8.2|2254023|37|NC_009698|CRISPRCasFinder
TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAA
>8.3|2254090|36|NC_009698|CRISPRCasFinder
CGACCCTATAACAGTTTCAGAAGTAGAACAAAATAT
>8.4|2253957|37|NC_009698|CRT
AATAGAGTATTCAGATGAATATAAATTCTTGGAAGAA
>8.5|2254023|38|NC_009698|CRT
TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAG
>8.6|2254090|37|NC_009698|CRT
CGACCCTATAACAGTTTCAGAAGTAGAACAAAATATG
>8.7|2254025|36|NC_009698|PILER-CR
AGAGGTGATTTTATATGAAAAAGGAAAACATAACAA
>8.8|2254092|35|NC_009698|PILER-CR
GACCCTATAACAGTTTCAGAAGTAGAACAAAATAT

CRISPR arrays and Neighbor proteins around NC_009698_8

CRISPR arrays

The CRISPR arrays of NC_009698_8

>merge|NC_009698|8|2253927-2254156|CRISPRCasFinder,CRT,PILER-CR
TTTTCAATACATTTAATGTTAATGTTCAATAATAGAGTATTCAGATGAATATAAATTCTTGGAAGAATTTAAATACATCTCATGTTAATGTTCAATTAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAGTTTAAATACATCTCATGTTAATGTTCAATCGACCCTATAACAGTTTCAGAAGTAGAACAAAATATGTTTAAATACATCTCATGTTAATGTTCAATC

>NC_009698|8|8|2253927-2254155|CRISPRCasFinder
TTTTCAATACATTTAATGTTAATGTTCAAT	AATAGAGTATTCAGATGAATATAAATTCTTGGAAGA
ATTTAAATACATCTCATGTTAATGTTCAAT	TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAA
GTTTAAATACATCTCATGTTAATGTTCAAT	CGACCCTATAACAGTTTCAGAAGTAGAACAAAATAT
GTTTAAATACATCTCATGTTAATGTTCAAT

>NC_009698|8|4|2253928-2254155|CRT
TTTCAATACATTTAATGTTAATGTTCAAT	AATAGAGTATTCAGATGAATATAAATTCTTGGAAGAA
TTTAAATACATCTCATGTTAATGTTCAAT	TAGAGGTGATTTTATATGAAAAAGGAAAACATAACAAG
TTTAAATACATCTCATGTTAATGTTCAAT	CGACCCTATAACAGTTTCAGAAGTAGAACAAAATATG
TTTAAATACATCTCATGTTAATGTTCAAT

>NC_009698|8|2|2253994-2254156|PILER-CR
TTTAAATACATCTCATGTTAATGTTCAATTA	GAGGTGATTTTATATGAAAAAGGAAAACATAACAAG
TTTAAATACATCTCATGTTAATGTTCAATCG	ACCCTATAACAGTTTCAGAAGTAGAACAAAATATG
TTTAAATACATCTCATGTTAATGTTCAATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl|CDD|224089
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl|CDD|273848
NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	unknown	unknown	gnl|CDD|238623
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|369561
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl|CDD|223461
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	unknown	unknown	gnl|CDD|274468
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	unknown	unknown	gnl|CDD|378897
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	unknown	unknown	gnl|CDD|213357
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|313108
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	5.1e-28	93.5	8.5
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	gnl|CDD|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.63467e-90
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.52022e-22
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	gnl|CDD|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.34486e-25
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	gnl|CDD|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	4.27346e-88
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.97681e-118
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	gnl|CDD|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	2.29895e-84
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	gnl|CDD|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.61201e-137
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	gnl|CDD|213357	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family. A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	0.00264746
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	0.000420917
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.23324e-15

Protein sequences

>NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
>NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein
MGKTLRFEIVSGVNKGYFHTNSQSESLDLVGGIWQKIAKEEFEKSNIYVSAVIKPSKTVYNQEWGCPENGEETVVLTGVANEEFVDDIEKWKDTVIKLAKELKNQMKQSTLTCEFIETELHYFK
>NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein
MTKEIISSHIFVFPFRWDVVKDEACFDTCIDSRLNTEKFIKYLKDNNQWEEDINISNIVENKEVENDLDYNTYAYFYDNVRKAIYGNPNSIKKNKNISVDLKNSKYYAGKLFNKKISNTIVRCLNYKNIDANSIYEIHVEKKDDKGTIVFDEHYKLKIKSIKLKVYDTGVATLSYFLNNYEWKNKEDILRINDYGRRIYPQHIPLDTVRSNFLAKKLSLKLKKRIIEEEFDYEIKEKPTKISKTIINILGEKFVSTEKELRYKSLSKEEIIFVKPVIDDRMFVICYYNNGFHSRVLTKYDKDEYLKNDFWYQFLFVDNDGATCKDEEMTKELLLKSTYTRWKSYGTLFGISRYSFVILCDESGFSKDVLYNHINIIYYEMILLALVQRASILRFSDETSRIASFERKNIYEQIKKLQEYYIRFVNTIYFREVTAQEQGIELYDKIVELMRIDTEVKRLDEEIDEIQRYINLETNDRTNRLLNVITFVGIGISVISLISSLFSNSKQIGDLTWLVTWQYVPFVMVLLVISVIKNYVNDNKVIKIIMWVITLLAIYIVLDYKFIKLFIK
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_011986669.1|2243092_2243431_-|hypothetical-protein
MDINSITNSLFIGMKIHKPKKETEIIKITDDGFWYGIGEKNKKKVTYDEIEEAVKEIKEKGMLTRQWYKEKFPKISKNNPCNFTTIGGVLVKFKLAEYTMGKYLYKNEIIYK
>NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase
MKKRFNVTGTCIPEKHYMVDISKKLDSILKLIDNEEYFIINRPRQYGKTTTLYMLEKRLNKMEEYLPIKISFEAIDTEGYSEAKKFLSSIMMQIINYFRFSTKKEIYKFVKRHENKVNTMNEFNRFITDLIEFTEKKVVLIIDEVDKSSNNQLFLDFLGMLRSKYLLRSEGKDYTFHSVILAGVHDVKQASKIYDFDMIAYSCEEISRRFLTKDLKIRSDEEHKYNSPWNIASDFDVDMSFSRSEIKTMLDDYVENKKVALDKEYFAEKLYFYTSGYPFLVSKLCKIIDEKIMDENKLEWKKEYLEIAVKELLKDSNTNFDSLIKNIENNEGLSRLVDNLLIKGVRINFNIHNPDINLGCLYGIFKDDKGNLKINNRIYEQLIYDYRISKIQTSSNFYNYNSKENFIDTNGDLNIRKVLLKFQEFMQHEYSKKRKGFLEEDGRLVFLAFLSPIINGIGFAFKEVKAGEEKRFEIVITYNKKMYILELKIWRGEEYHKKGLIQLAEYLEQYKLDKGYLLIFDLRKSTNLIGEVEENYIGIENHSKKIIQVYC
>NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase
MITFSPFPVIETKNLFLRRMTNDDTHDIFQLRKDPKMNYYTDTRLDENPEETKSYIDKMNKGIDEVEWIVWAIEHRQSKKVIGTISIWNINLEQRNAELGYGITPAYQNKGLMKEALLSVADYGFNVMNLSN
>NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein
MNIKIDKNSLITITQQLVHYFSDRIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLSLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSNRKAELLDIARYNDILIVEDDPWNEISYKREKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQSNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein
MSKLNPEKLSVEFRDGVTGTEPILGRRYTLTHSDITAELFLTIGLTYAYDKIDVMRDEVLGEWIEKEKNYLFHVYLHVDGNNPIVTGVRNHIFRRELPLALEAIRYGDRKFFISHPKLDNSPVIVHFISSYPSFDRIEKWGTFSDYSLKKR
>NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator
MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDSFKNDFGFNDTDTVLVLKDILYQKYKMEKKKKVDNSKEKI
>NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase
MKKVIKVVSVILVILVIAGFFIIKNLTETKDGKLNMYVAANLQLYKILNPKSLNNKSIEETRGALNKQSTRWSNKPIPFSNIKNLDIKMNNEKIPVRIYTPEKGSNFPIIIYSHGGFWIGGNVDTIDGVCRKLSQNTKAIVISVNYRLAPENPFPAGLNDVYNVLQWTYKNGKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPSITCQVLIYPSTNIFKLNSKSWSHFSNSFNVSTEDMEKYISIYAPKKEDRKSPYASPLLSKDLRKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKAEVTRYKGITHGFITMDKITNKADEALNQISLYIQKEFQK
>NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase
MNQILIKNGYIITMDCSKRIFEKGDILVEDSKIIAIGNVESELIKSNVEIIDANGKIIMPGLVNTHVHLSQQLARGLADDVDLLTWLRKRIWPYESNMDLEDSYISSLACCTELIRSGVTTFCEAGGQEVDGMGKAVEEAGLRGILCRSTMDCGDGLPLKWQETTEESLQKQVELLERWNGKGDGRIKYWFGLRTIFNTTDKLITKTKELADKYKVGIHMHVAEIEEEVRYAEATRGETTVQHLAKLGVLDKNFLAVHTVWLTEQEIDLFKLHNVKVSHNPGAAMKVVLGFAHIPEMLEKGINVSIGTDGAPSNNRMDMFDEMHLTSLIHKGRRLNPKVVPADEVLEMATMNGAKCALWEDEIGSLEVGKKADLIIINPKSIGSLPMHDPIGNIVYSMHSSDVESSMCNGKWLMKNKVLLTIDEEDIIREAQEKATALVKKAGIVLPKRF
>NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease
MKNTKDTNLIVGIDEKISLRYAFFLGLQHVFAMDLYIVPIILAGILSLDAQNTAYFIQMSFIAAGIATLIQTGLCMRLPIMQGPSYIPIGALAAIGSKLGLQAMVGSLIPGSLFLMILGYPLRFLSKIISKFIPHIVGGTVIVIVGISLMPVAMTNIFTAPGNLKINCILALISSALLVGCMMIGRKSNKFGKAVRLTSVMISLIGGTIAASLLGVVDFTPVTKAAWFSFPKLLPFGKPVFDLKAILTMLFIYAVILVETSGTWFAVSAVTGSELTDEGLNRGAVGEGIGCFVGALFGGTPMTGYSTNAGIIAVTGVGSRMAIIAGGIILVALGMLPKLMNVIACIPSAVVSGVFAVVCVIIAMNGFKSIQHEEFDERNMLLIGLPILLALGTTVLPKDILNSLPSLANYIFSSGITVGALAAVILNILLPKAPVEVSKSQEYEEAV
>NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein
MSNKRNLQSIRSFYLCILIFNIVYSSIFHLNNKGFNIKLFGDLTMRSVVLFTLNSILFLCVAIAVEKKINIDEEIKTQVSMRIKPLYLVNMFFITYILVCIFLLKNLDVILSSFVMEIIYIGILILTKKIIALELTDRQLQWQKACGYIDESCEKSSFLWKFKIWYSPHINVPFKNRWKGLSRLLYDLALVYGIFISKGNLFSLPLLILLFPDVLSWLEGLLGLQTSLTGMCTGITEHHNKNSHVIYHKVYVTDYKNKREITFYVDGPLFIHENSHMTVVHGTFSKRVLYVEGLNLDIR

Crispr_ID: NC_009698_9

• CRISPR_ID: NC_009698_9
• CRISPR_location: 2256374-2256534
• CRISPR_type: TypeIII
• Repeat_type: III-B
• Spacer_info: 2 spacers
• Cas_protein_info: cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

Consensus repeat of NC_009698_9

Consensus_repeat	Method
ATTTAAATACATCCTATGTTAATGTTCAAC	CRISPRCasFinder

spacers of NC_009698_9

>9.1|2256404|36|NC_009698|CRISPRCasFinder
ACGTAGGAAAGAAAATGGAATCTATAGGTAAGGATA
>9.2|2256470|35|NC_009698|CRISPRCasFinder
TTTAATATTTTTTCTATATCCATAGGCTTAAAATC

CRISPR arrays and Neighbor proteins around NC_009698_9

CRISPR arrays

The CRISPR arrays of NC_009698_9

>merge|NC_009698|9|2256374-2256534|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAACACGTAGGAAAGAAAATGGAATCTATAGGTAAGGATAATTTAAATACATCCTATGTTAATGTTCAACTTTAATATTTTTTCTATATCCATAGGCTTAAAATCATTTAAATACATCCTATGTTAATGTTCAAC

>NC_009698|9|9|2256374-2256534|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAAC	ACGTAGGAAAGAAAATGGAATCTATAGGTAAGGATA
ATTTAAATACATCCTATGTTAATGTTCAAC	TTTAATATTTTTTCTATATCCATAGGCTTAAAATC
ATTTAAATACATCCTATGTTAATGTTCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl|CDD|224089
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl|CDD|273848
NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	unknown	unknown	gnl|CDD|238623
NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein	unknown	unknown	unknown
NC_009698.1|WP_011986689.1|2268493_2269813_+|APC-family-permease	unknown	unknown	gnl|CDD|223605
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|369561
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl|CDD|223461
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	unknown	unknown	gnl|CDD|274468
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	unknown	unknown	gnl|CDD|378897
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|187810
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|273855
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	unknown	unknown	gnl|CDD|213357
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl|CDD|187880
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|313108
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	2.4e-33	110.3	4.3
NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	8e-101	332.7	26.1
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.3e-39	129.7	25.1
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-23	79.0	0.0
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	5.1e-28	93.5	8.5
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	2.8e-26	87.0	5.6
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	7e-49	161.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase	gnl|CDD|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.63467e-90
NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38689e-26
NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.52022e-22
NC_009698.1|WP_011986689.1|2268493_2269813_+|APC-family-permease	gnl|CDD|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.6355e-27
NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase	gnl|CDD|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.34486e-25
NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein	gnl|CDD|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	4.27346e-88
NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.97681e-118
NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein	gnl|CDD|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	2.29895e-84
NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease	gnl|CDD|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.61201e-137
NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.17511e-33
NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3	gnl|CDD|273855	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.	5.08335e-12
NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein	gnl|CDD|213357	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family. A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	0.00264746
NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein	gnl|CDD|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	2.53577e-07
NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.14208e-46
NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	0.000420917
NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.23324e-15

Protein sequences

>NC_009698.1|WP_011986679.1|2254366_2256022_-|AAA-family-ATPase
MKKRFNVTGTCIPEKHYMVDISKKLDSILKLIDNEEYFIINRPRQYGKTTTLYMLEKRLNKMEEYLPIKISFEAIDTEGYSEAKKFLSSIMMQIINYFRFSTKKEIYKFVKRHENKVNTMNEFNRFITDLIEFTEKKVVLIIDEVDKSSNNQLFLDFLGMLRSKYLLRSEGKDYTFHSVILAGVHDVKQASKIYDFDMIAYSCEEISRRFLTKDLKIRSDEEHKYNSPWNIASDFDVDMSFSRSEIKTMLDDYVENKKVALDKEYFAEKLYFYTSGYPFLVSKLCKIIDEKIMDENKLEWKKEYLEIAVKELLKDSNTNFDSLIKNIENNEGLSRLVDNLLIKGVRINFNIHNPDINLGCLYGIFKDDKGNLKINNRIYEQLIYDYRISKIQTSSNFYNYNSKENFIDTNGDLNIRKVLLKFQEFMQHEYSKKRKGFLEEDGRLVFLAFLSPIINGIGFAFKEVKAGEEKRFEIVITYNKKMYILELKIWRGEEYHKKGLIQLAEYLEQYKLDKGYLLIFDLRKSTNLIGEVEENYIGIENHSKKIIQVYC
>NC_009698.1|WP_011986678.1|2251938_2252628_-|CRISPR-associated-endoribonuclease-Cas6
MEFCELIATVMLKKDIYFEDCGYIIGKNINKSMLLDKDLKEIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKQRYIKELYTQTPLIITVDDKPWLQNDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKGKFIKSIEFKNRKPMHYNYKNGIKLLANKVSIQIKDNEEAQKVAFLARAIGLGEKNPSIGAGFCK
>NC_009698.1|WP_011986677.1|2251544_2251919_-|hypothetical-protein
MGKTLRFEIVSGVNKGYFHTNSQSESLDLVGGIWQKIAKEEFEKSNIYVSAVIKPSKTVYNQEWGCPENGEETVVLTGVANEEFVDDIEKWKDTVIKLAKELKNQMKQSTLTCEFIETELHYFK
>NC_009698.1|WP_011986676.1|2249789_2251493_-|hypothetical-protein
MTKEIISSHIFVFPFRWDVVKDEACFDTCIDSRLNTEKFIKYLKDNNQWEEDINISNIVENKEVENDLDYNTYAYFYDNVRKAIYGNPNSIKKNKNISVDLKNSKYYAGKLFNKKISNTIVRCLNYKNIDANSIYEIHVEKKDDKGTIVFDEHYKLKIKSIKLKVYDTGVATLSYFLNNYEWKNKEDILRINDYGRRIYPQHIPLDTVRSNFLAKKLSLKLKKRIIEEEFDYEIKEKPTKISKTIINILGEKFVSTEKELRYKSLSKEEIIFVKPVIDDRMFVICYYNNGFHSRVLTKYDKDEYLKNDFWYQFLFVDNDGATCKDEEMTKELLLKSTYTRWKSYGTLFGISRYSFVILCDESGFSKDVLYNHINIIYYEMILLALVQRASILRFSDETSRIASFERKNIYEQIKKLQEYYIRFVNTIYFREVTAQEQGIELYDKIVELMRIDTEVKRLDEEIDEIQRYINLETNDRTNRLLNVITFVGIGISVISLISSLFSNSKQIGDLTWLVTWQYVPFVMVLLVISVIKNYVNDNKVIKIIMWVITLLAIYIVLDYKFIKLFIK
>NC_009698.1|WP_011986675.1|2248589_2249777_-|hypothetical-protein
MAKLKIGLKQHTPLIHFQSEQPGAILRATEVKSKLDKFLKKYAFPGGFEEYKQYLIGYKTDKKDKIEDFGDKQAFDYKLRIYTENPNKIQKINIKGGMQALYFAGRSNNGNVKGILTNEDIILEFFTFHKGLMEIIKNNIEGFFCINNFGTRQNKGFGSFYLKKPINEVDKLIDRICTHDKTNIYLNIKYNKGDYFQIFEDISVIYPLMKSGLNFPKWPKSYHKSFLFKYMLNKDIGNEKRFIKENFFSPWKRIENDNKEKRYVRAMLGICDGIEFRDSERTGKVKYNSNIERFQSPILFKIINNELFIIPKKIPKEMFYNKFKFSNEFKSGRESKVNKEIIYTPKEDEFNLENFLSGFADYFNNHIKVSNVNNVFENKIRKAKLRRIDIKQVVK
>NC_009698.1|WP_011986674.1|2246876_2248589_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTKNKKSYIGLTIGPIVETIGNAKQTGELWASSYLFSYIMKNIIKTLIVKDREVNKDREQNEKLENRFILPCIDDILNKLSKNEMEQKSIQKIENNTDKAEQEVGLFHDRFIFQSENGEFDLVKESINEVIDGIVTGIENHDVCKDKSREEIKSDIEDFLKIYYLEIDIDLNQEEKENKLSSENNIIFKVNRALDALELREKILGNNGVENNYILQTLNNKQLKEQDFKKHFLSKDAYGENGKDGDYPSLFKIALDETYNNEFPNEDEKIKEELKQMGERKRLKANEYVAIVQADGDSMGRVIEKFKIHNDRENIYVDYKDFSSKLLEYDKNSHEKIKKYGGFTIYAGGDDLLFIAPVITKNKNNIFQLIDALSGLFDNEFKHEEEKPTTSFGIAIVHHKFPLYYALDEARDLLFNKAKNYKFNGEEKNAIAFKVIKSSGQSFETVVGKKSESYKQFKELFKNVSNSLNGKDRKIKNYLKAIHFKIKRDKVILNKIGKNEELLENYFKNNFDEKFHENGDIKKYINYLIKFIYLIYGETKTDEDKNKCIEQIYTYLRFIKFMDEDINLDN
>NC_009698.1|WP_011986673.1|2245660_2246860_-|CRISPR-associated-protein-Cmr3
MSKYLVKLKPVDSFFFGGEKVFDFYDGKKPLKNNIVKSREFPQQTSILGMIRKEILVLNSCIREKWDYSKDQQKENNKLIGERSFNITDKNEDFGIINSISPVFIIEETKVSDKFLIKIPKDHNVNDSLNKYNPFKFNNDKGNCLKVKTNLVKEVYLPIDFEAKKGLSEDFIDIKTGDIVSKNKVFIRDCSIGIKLDENHKTKDNSLFRLEKYKFKYDNRYERADKCFAFILDVEEEKGKITFENYKNIITLGGEGSHFFISFEKVNFDIKEKIDFINKEKNSFTIKERVRVATNKEEIKETKLIYKIILLSDTYISKDIYEKNCNYSISTKIDFRNLCSDNYCKNIDEYHYKRLKKSDSKYSLLEKGSVLFASKENYDRLIKNINNSKFQKIGYNIFI
>NC_009698.1|WP_011986672.1|2244809_2245649_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MDNFKIYTIRCLTNMHVGSGDASYTLIDNQVQRDVITGFPTINSSSLKGSLRSFLDPKKEKSKAIKYIFGDKEDGMGNYKIFPGMLLSMPVRSNVKPFFRATCPRIIKDFLGFIENFQPQTSDIKNIKTLEEDLKNIEKVADKNKNTIFILKNFNRDIDVKFDNNQRIEGIKITSEQEISLKGEERIKEIFGESLILIDDNSFNDIVDRLPVIARNKLDNGESENLWYEEVVPRETRFYFGTILGKEHQSEFGKIEGKQPVQIGSNATIGYGYCDIKSI
>NC_009698.1|WP_011986671.1|2244347_2244782_-|hypothetical-protein
MNKREIEKQIPIAIDLIDEFMKKKKFLKKDDKEDDKKLKGIAKEYKGYISNFGASIIQSGLLSTVAFFEANDSKSKSDKQVLMDLILKVVDIYNEKQLEWKNNSPFLHYILENNNKQTEEEVINAAIAVKLAMRVFKFTENSES
>NC_009698.1|WP_011986670.1|2243442_2244336_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIGNIGYLYYKEYFKDEYIHECKIQSKKYDEKNNPLIKINQKILDNSNIDILKNNKFKFIKEIQDKLYKKRIYFKTTYPGLIVGTGYSHILKEKEEFKLSLEFDYTTGLPVINGSSIKGMLRSVFYNKKDDEKLIEEKEKYIRDILKELIKKENPKFNGEFDFEELTNNIFEGKCKAKDKNGIHMSISERDIFLGATIDIEATIEEMKRTKQEKNNLLGEDYVTPHGEGKDKLKNPNPIKFLKVMPNVVWCFGFDLKDFNKDIPADIKKKLFKQILLDLGIGAKTNVGYGRLEFISY
>NC_009698.1|WP_003395350.1|2256988_2257387_-|GNAT-family-N-acetyltransferase
MITFSPFPVIETKNLFLRRMTNDDTHDIFQLRKDPKMNYYTDTRLDENPEETKSYIDKMNKGIDEVEWIVWAIEHRQSKKVIGTISIWNINLEQRNAELGYGITPAYQNKGLMKEALLSVADYGFNVMNLSN
>NC_009698.1|WP_011986681.1|2257784_2258705_-|PhzF-family-phenazine-biosynthesis-protein
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>NC_009698.1|WP_011986682.1|2259028_2260522_+|PLP-dependent-aminotransferase-family-protein
MNIKIDKNSLITITQQLVHYFSDRIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLSLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSNRKAELLDIARYNDILIVEDDPWNEISYKREKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQSNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>NC_009698.1|WP_011986683.1|2261446_2261902_+|staygreen-family-protein
MSKLNPEKLSVEFRDGVTGTEPILGRRYTLTHSDITAELFLTIGLTYAYDKIDVMRDEVLGEWIEKEKNYLFHVYLHVDGNNPIVTGVRNHIFRRELPLALEAIRYGDRKFFISHPKLDNSPVIVHFISSYPSFDRIEKWGTFSDYSLKKR
>NC_009698.1|WP_011986684.1|2261981_2262449_-|helix-turn-helix-transcriptional-regulator
MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDSFKNDFGFNDTDTVLVLKDILYQKYKMEKKKKVDNSKEKI
>NC_009698.1|WP_012047739.1|2262616_2263648_-|alpha/beta-hydrolase
MKKVIKVVSVILVILVIAGFFIIKNLTETKDGKLNMYVAANLQLYKILNPKSLNNKSIEETRGALNKQSTRWSNKPIPFSNIKNLDIKMNNEKIPVRIYTPEKGSNFPIIIYSHGGFWIGGNVDTIDGVCRKLSQNTKAIVISVNYRLAPENPFPAGLNDVYNVLQWTYKNGKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPSITCQVLIYPSTNIFKLNSKSWSHFSNSFNVSTEDMEKYISIYAPKKEDRKSPYASPLLSKDLRKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKAEVTRYKGITHGFITMDKITNKADEALNQISLYIQKEFQK
>NC_009698.1|WP_011986686.1|2263913_2265266_-|amidohydrolase
MNQILIKNGYIITMDCSKRIFEKGDILVEDSKIIAIGNVESELIKSNVEIIDANGKIIMPGLVNTHVHLSQQLARGLADDVDLLTWLRKRIWPYESNMDLEDSYISSLACCTELIRSGVTTFCEAGGQEVDGMGKAVEEAGLRGILCRSTMDCGDGLPLKWQETTEESLQKQVELLERWNGKGDGRIKYWFGLRTIFNTTDKLITKTKELADKYKVGIHMHVAEIEEEVRYAEATRGETTVQHLAKLGVLDKNFLAVHTVWLTEQEIDLFKLHNVKVSHNPGAAMKVVLGFAHIPEMLEKGINVSIGTDGAPSNNRMDMFDEMHLTSLIHKGRRLNPKVVPADEVLEMATMNGAKCALWEDEIGSLEVGKKADLIIINPKSIGSLPMHDPIGNIVYSMHSSDVESSMCNGKWLMKNKVLLTIDEEDIIREAQEKATALVKKAGIVLPKRF
>NC_009698.1|WP_011986687.1|2265474_2266818_-|purine-permease
MKNTKDTNLIVGIDEKISLRYAFFLGLQHVFAMDLYIVPIILAGILSLDAQNTAYFIQMSFIAAGIATLIQTGLCMRLPIMQGPSYIPIGALAAIGSKLGLQAMVGSLIPGSLFLMILGYPLRFLSKIISKFIPHIVGGTVIVIVGISLMPVAMTNIFTAPGNLKINCILALISSALLVGCMMIGRKSNKFGKAVRLTSVMISLIGGTIAASLLGVVDFTPVTKAAWFSFPKLLPFGKPVFDLKAILTMLFIYAVILVETSGTWFAVSAVTGSELTDEGLNRGAVGEGIGCFVGALFGGTPMTGYSTNAGIIAVTGVGSRMAIIAGGIILVALGMLPKLMNVIACIPSAVVSGVFAVVCVIIAMNGFKSIQHEEFDERNMLLIGLPILLALGTTVLPKDILNSLPSLANYIFSSGITVGALAAVILNILLPKAPVEVSKSQEYEEAV
>NC_009698.1|WP_012047740.1|2267253_2268153_+|hypothetical-protein
MSNKRNLQSIRSFYLCILIFNIVYSSIFHLNNKGFNIKLFGDLTMRSVVLFTLNSILFLCVAIAVEKKINIDEEIKTQVSMRIKPLYLVNMFFITYILVCIFLLKNLDVILSSFVMEIIYIGILILTKKIIALELTDRQLQWQKACGYIDESCEKSSFLWKFKIWYSPHINVPFKNRWKGLSRLLYDLALVYGIFISKGNLFSLPLLILLFPDVLSWLEGLLGLQTSLTGMCTGITEHHNKNSHVIYHKVYVTDYKNKREITFYVDGPLFIHENSHMTVVHGTFSKRVLYVEGLNLDIR
>NC_009698.1|WP_011986689.1|2268493_2269813_+|APC-family-permease
MLEKKYGLWTTVSMVIGIVIGSGVFFKADNILMASGGNVKTALLAWLVGAISMIFGALVFAECANRFERSNGIVDYAEGMLSEKFAYLIGWFNGIIYYPAIAAVLAWAAGNYTAILFNKDGNFVWIMAAIYMIGIYILNYISPILSGKFQIASTAIKLVPLMLIAILGTFQGLNNGILIENFSKVSTIGDSGSGFAAAVLGAAFAYEGWIIATTINGEIKDAKNTLPKALVFGSLVIVIIYILYFLGIVGMIPTETILKQGDNTVNVAARTVFGNFGASILTTFIIVSCLGTLNGLILGGSRSFYSLAIRGQGIKPEAFSKLDSKTNIPTNSTIANFILICIYLVVWYMNFKGLFPNKMFVDISELPIALIYGIYIIIYIAYMMKMKDLSFIKRFVIPSLALMGALIVVYGGLSKPSVIIDLGISVFVFLSGLLFYNKK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009698_2	2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT	2231155-2231190	36	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	174503-174538	0	1.0
NC_009698_2	2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT	2231155-2231190	36	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	62802-62837	0	1.0
NC_009698_2	2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT	2231155-2231190	36	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	207645-207680	0	1.0
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	149447-149482	0	1.0
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	128281-128316	0	1.0
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	129903-129938	0	1.0
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	80344-80379	0	1.0
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	37712-37747	0	1.0
NC_009698_2	2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT	2231155-2231190	36	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	219276-219311	1	0.972
NC_009698_4	4.1|2238529|36|NC_009698|CRISPRCasFinder	2238529-2238564	36	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	47769-47804	2	0.944
NC_009698_8	8.1|2253957|36|NC_009698|CRISPRCasFinder	2253957-2253992	36	GU949551	Clostridium phage phiCD6356, complete genome	4906-4941	2	0.944
NC_009698_2	2.2|2231024|35|NC_009698|CRISPRCasFinder,CRT	2231024-2231058	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	30926-30960	3	0.914
NC_009698_2	2.2|2231024|35|NC_009698|CRISPRCasFinder,CRT	2231024-2231058	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	163878-163912	3	0.914
NC_009698_8	8.4|2253957|37|NC_009698|CRT	2253957-2253993	37	GU949551	Clostridium phage phiCD6356, complete genome	4906-4942	3	0.919
NC_009698_8	8.8|2254092|35|NC_009698|PILER-CR	2254092-2254126	35	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	17536-17570	4	0.886
NC_009698_8	8.3|2254090|36|NC_009698|CRISPRCasFinder	2254090-2254125	36	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	17535-17570	5	0.861
NC_009698_8	8.6|2254090|37|NC_009698|CRT	2254090-2254126	37	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	17535-17571	6	0.838
NC_009698_8	8.8|2254092|35|NC_009698|PILER-CR	2254092-2254126	35	MN693403	Marine virus AFVG_25M412, complete genome	14464-14498	6	0.829
NC_009698_9	9.2|2256470|35|NC_009698|CRISPRCasFinder	2256470-2256504	35	MN694042	Marine virus AFVG_250M538, complete genome	50649-50683	7	0.8
NC_009698_2	2.3|2231089|36|NC_009698|CRISPRCasFinder,CRT	2231089-2231124	36	MT795651	Vibrio phage vB_VnaS-AQKL99, complete genome	5039-5074	8	0.778
NC_009698_9	9.2|2256470|35|NC_009698|CRISPRCasFinder	2256470-2256504	35	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1277029-1277063	8	0.771
NC_009698_8	8.3|2254090|36|NC_009698|CRISPRCasFinder	2254090-2254125	36	MN693403	Marine virus AFVG_25M412, complete genome	14464-14499	10	0.722
NC_009698_1	1.2|1826844|40|NC_009698|CRISPRCasFinder	1826844-1826883	40	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	417214-417253	11	0.725
NC_009698_8	8.6|2254090|37|NC_009698|CRT	2254090-2254126	37	MN693403	Marine virus AFVG_25M412, complete genome	14463-14499	11	0.703

1. spacer 2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 0, identity: 1.0

atttcatcaaatccgcatcaataaatgagataaact	CRISPR spacer
atttcatcaaatccgcatcaataaatgagataaact	Protospacer
************************************

2. spacer 2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 0, identity: 1.0

atttcatcaaatccgcatcaataaatgagataaact	CRISPR spacer
atttcatcaaatccgcatcaataaatgagataaact	Protospacer
************************************

3. spacer 2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 0, identity: 1.0

atttcatcaaatccgcatcaataaatgagataaact	CRISPR spacer
atttcatcaaatccgcatcaataaatgagataaact	Protospacer
************************************

4. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaaatgttgtggtataacagaatgtaaata	Protospacer
************************************

5. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaaatgttgtggtataacagaatgtaaata	Protospacer
************************************

6. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaaatgttgtggtataacagaatgtaaata	Protospacer
************************************

7. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaaatgttgtggtataacagaatgtaaata	Protospacer
************************************

8. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaaatgttgtggtataacagaatgtaaata	Protospacer
************************************

9. spacer 2.4|2231155|36|NC_009698|CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 1, identity: 0.972

atttcatcaaatccgcatcaataaatgagataaact	CRISPR spacer
atttcatcaaatccgcatcaataaatgagattaact	Protospacer
******************************* ****

10. spacer 4.1|2238529|36|NC_009698|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 2, identity: 0.944

atgttgtaaatgttgtggtataacagaatgtaaata	CRISPR spacer
atgttgtaagtgttgtagtataacagaatgtaaata	Protospacer
*********.******.*******************

11. spacer 8.1|2253957|36|NC_009698|CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 2, identity: 0.944

aatagagtattcagatgaatataaattcttggaaga	CRISPR spacer
aatagagtattcagatgaatataagttcttagaaga	Protospacer
************************.*****.*****

12. spacer 2.2|2231024|35|NC_009698|CRISPRCasFinder,CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 3, identity: 0.914

cttaaatatataggtatagatcaagacgctaaaga	CRISPR spacer
ttgaaatatataggcatagatcaagacgctaaaga	Protospacer
.* ***********.********************

13. spacer 2.2|2231024|35|NC_009698|CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 3, identity: 0.914

cttaaatatataggtatagatcaagacgctaaaga	CRISPR spacer
ttgaaatatataggcatagatcaagacgctaaaga	Protospacer
.* ***********.********************

14. spacer 8.4|2253957|37|NC_009698|CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 3, identity: 0.919

aatagagtattcagatgaatataaattcttggaagaa	CRISPR spacer
aatagagtattcagatgaatataagttcttagaagat	Protospacer
************************.*****.***** 

15. spacer 8.8|2254092|35|NC_009698|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 4, identity: 0.886

gaccctataacagtttcagaagtagaacaaaatat	CRISPR spacer
aaatctataacagtttcagaagtagaaaaaaatat	Protospacer
.* .*********************** *******

16. spacer 8.3|2254090|36|NC_009698|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 5, identity: 0.861

cgaccctataacagtttcagaagtagaacaaaatat	CRISPR spacer
taaatctataacagtttcagaagtagaaaaaaatat	Protospacer
..* .*********************** *******

17. spacer 8.6|2254090|37|NC_009698|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 6, identity: 0.838

cgaccctataacagtttcagaagtagaacaaaatatg	CRISPR spacer
taaatctataacagtttcagaagtagaaaaaaatata	Protospacer
..* .*********************** *******.

18. spacer 8.8|2254092|35|NC_009698|PILER-CR matches to MN693403 (Marine virus AFVG_25M412, complete genome) position: , mismatch: 6, identity: 0.829

gacccta-taacagtttcagaagtagaacaaaatat	CRISPR spacer
-acagtactaacagcttcagaagtagcacaaaattt	Protospacer
 **  ** ******.*********** ******* *

19. spacer 9.2|2256470|35|NC_009698|CRISPRCasFinder matches to MN694042 (Marine virus AFVG_250M538, complete genome) position: , mismatch: 7, identity: 0.8

tttaatattttttctatatccataggcttaaaatc	CRISPR spacer
tttaatatttcttctttatccatagtgtttataac	Protospacer
**********.**** *********  ** * * *

20. spacer 2.3|2231089|36|NC_009698|CRISPRCasFinder,CRT matches to MT795651 (Vibrio phage vB_VnaS-AQKL99, complete genome) position: , mismatch: 8, identity: 0.778

tcttaacctttaattacattatatattataagttca	CRISPR spacer
gcttaacctttaaatacattatacattaccaaccca	Protospacer
 ************ *********.****. *...**

21. spacer 9.2|2256470|35|NC_009698|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.771

tttaatattttttctatatccataggcttaaaatc--	CRISPR spacer
agtaatattttttctatattcataggc--agcttccg	Protospacer
  *****************.*******  *.  **  

22. spacer 8.3|2254090|36|NC_009698|CRISPRCasFinder matches to MN693403 (Marine virus AFVG_25M412, complete genome) position: , mismatch: 10, identity: 0.722

cgaccctataacagtttcagaagtagaacaaaatat	CRISPR spacer
cacagtactaacagcttcagaagtagcacaaaattt	Protospacer
*.   .  ******.*********** ******* *

23. spacer 1.2|1826844|40|NC_009698|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 11, identity: 0.725

tatttaaaggatttaaactta---catcatttagatctaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.*.      

24. spacer 8.6|2254090|37|NC_009698|CRT matches to MN693403 (Marine virus AFVG_25M412, complete genome) position: , mismatch: 11, identity: 0.703

cgaccctataacagtttcagaagtagaacaaaatatg	CRISPR spacer
cacagtactaacagcttcagaagtagcacaaaatttt	Protospacer
*.   .  ******.*********** ******* * 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	559688 : 569102	7	Bacillus_phage(33.33%)	NA	NA
DBSCAN-SWA_2	874374 : 886093	6	Clostridium_botulinum_D_phage(50.0%)	NA	NA
DBSCAN-SWA_3	1655277 : 1662343	8	uncultured_phage(33.33%)	NA	NA
DBSCAN-SWA_4	2926606 : 2936075	7	Synechococcus_phage(42.86%)	NA	NA
DBSCAN-SWA_5	3084525 : 3103405	23	Clostridium_phage(94.74%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_009698|559688:569102|DBSCAN-SWA
CATGATTATAAAAAAGAAATTGCTTTTAAAAGGCTTACATTGTGCCAATTGTGCAACAAAAATAGAACGAGCCGTGCAAAAGCTAAATATAATAGAGGAAGCTAACTATAATTTTAATAATTCAACTTTAATTATTAACTTAGAAGAAACTCATAAAGATAGCATTATAAAAACAATACAAGAAATAGTAGATAGAATAGAACCCGGGGTAAAGGTAGTAGATAAAGAAAATTTAAAAAGAACGGTAGTGCATGCCCCTGTTAAAAATAGTAGTAATTTAAAGATGCAGAATAATAAAGAGGAAAATTTAAAATTAGATAAAAAAGAAAATAGTTATGAGCATAATCATGATCATAGTCATGGACACAGTCATGATGGAGAAGATAGTGACGAGTTAGAAAAGAAGACTCTTATAAGAATTATTTCAGGAGTGGTTTTATTAATTTTAGCTACCGTATTGAAATCTAAAGAAACTTTGTCTATAGGTCTATATTTAACTTCATATGTATTAATTGGAGGTAAGGTAATATTAAGTTCTATAAGAAATATATCTAAAGGACAAGTATTTGATGAAAACTTTTTAATGGCTGTTGCAACTGTAGCGGCTATAGGAGTAAAACAGTATCCAGAAGCAGTAGCGGTTATGCTATTTTATGAAGTAGGGGAGTTCTTACAAGATAAAGCTGTTAATAAATCTAGAAAATCTATAACAGCACTTATGAATATAAGACCTGACTATGCCAATTTAGTTAGAGGTGAAGATATAGAAGTAGTTTCTCCAGAAGATATTAATATAGATGATATTATAATGGTAAAACCAGGAGAAAAAATTCCTCTAGATGGTATAGTTGTAGAAGGACAATCTTTTGTAGATACATCAGCTATAACAGGTGAATCTTTAATAAGTGAAGTTTCAAAAGATAGTAATGTATTAAGTGGATATATAAACAAAAATGGTGTTATAAAAATAAAAGTTACAAAAACCTTTGGAGAATCTACAGTGTCCAAAATATTGGAATTAACAGAAAACGCATCAGCTACTAAGGCAAATACAGAAAAATTTATAACAAAGTTCGCCAGATATTATACTCCTGTAGTTGTTTTTGCTGCTTTAGCTTTAGCAGTAATTCCTACACTAATACTAAAAGATCCAGATATATCTAAATGGATTTATAGAGCAGCTGTATTTTTAGTAGTATCTTGTCCATGTGCTTTAGTAATATCAATACCTTTAAGCTTCTTTGCTGGTATTGGAGGGGCATCTAAAAAAGGTGTTTTAATAAAAGCAGGAACAGCATTAGAAGCTCTAAATGATGCAGATACAATAGTATTTGATAAAACAGGAACTTTAACTAAAGGTGTGTTTAAAGTATCAAAAATTGATTCAGAAGAAGGAGTAAATACAGAAGAATTAATAGAATATGCTGCTTATGTAGAAAGTTATTCTAATCACCCTATCGCAAAATCTATACTAAAGTATTATGAAAAAACCATAGATAATAAAAGAATAGAAGGTTATGAAGAAATAGTTGCAAGAGGTGTAACTGCTTATATTGATGGCAAAAAAGTTTATGCTGGTAACAATAAATTAATGGAAGAATTAAATATTAACTATAAAAAAGCTCAAGAGGATGGAGTAATCCTTTATATAGCATTAGAAGATAAGTATATAGGTTATATAGTTATAAACGACGAAATAAAGAAAGATTCAAAAGAAACAATAAAATCATTAAAAGATATAGGTATAAAAAAAGCAGCTATGCTTACAGGAGATAGAAAATCTACAGCTAATAATATAGGGACTTTTCTAGGAATGGATGAAATATACTCAGAACTTTTACCACAGGAAAAGGTAGAAAAGATGCAATCCTTAAAGTCCAAAACATCTAAAGATGGGAAAATTGTTTTTGTAGGGGATGGAGTAAATGATGCTCCAGTATTAGCTATGTCAGATATAGGGGTATCCATGGGAGGCTTAGGATCTGATGCAGCCATAGAAGCATCTGATTTAGTTTTAATGTCTGATGAACCATCAAAATTAGTAGATGCCATAAAAATAGCTAGAAAAACTCATAAAATAGTATGGCAAAATATAATTATAGTTTTAATAATCAAGTTTGCAGTATTAGCTCTAGCTGTAATGGGAAAAAGTACTATGTGGATGGCTGTTTTTGCCGATGTAGGTGTGGCTTTAATAGCAGTAATAAATGCATTAAGAATACTAAAATAAGAATTTACTAAAATAATAACTTTCTAAAGAAGGATAGGAACGAATAATTTTAAAGAAAAATATTTAATTATATTTATATAGTTTTAGTTAAGTAGTTTTAGGTTCAGATGGAGTTTGCTTAGAATAATTATTTTTCTCCATCTGAACATTATTATTTATCAGAGAGTAATAAATATAGAAGATTAATTTTTATGAAAGTATAAAAAATTATCAAATTGTATAAACAAAGTATACTTATGAGAAATTATAAGATGAGTATTAGGTACTTCTATATATTCTTCAATAAATGTTATGTAAAAATAAAAGATTTAATAATTTAATAAAAAAATTAAAAACAAAAGAAAATATTTCTAAAAAATATTGACTTAAAATTTAGGCTGTAATATAATTATATATGTTCAAAGAAAATAAATAATTGAGGCTTCTTGGTCAAGCGGTTAAGACGCCACCCTCTCACGGTGGAATCAGGGGTTCGACTCCCCTAGGAGCTACCAGATTTGAAGAAATGCTGTAAACAGTGATGTTTACAGCATTTCTTATTTAGAAGTGAAAATGGAAAATTAATATTTTCCCACACTAGAAAAATACAAATATAAACTTCCTTTCTAATCAAATTTCCATTGGCATCCCCCAATAATTTAAATAGTTTGTTAAAGGCTAAAGAAAAAGCTTTACCAAAAGGATTTAATGAAGCTAGATTTTTACAAAATTGCATGACAGTATTAAAAGATATTAAAAATATAGAAAAATGTAATGAAGTGAGTGTAGTAAGAACAATGCTTAAAGGAGTATTTCTAGGTTTAGACTTCTTTAATAAGGAATGTTATGCAATACCAGTTTATTTAAATCTTTTTTAGAAGAATATAATGGATGTGAAGCTAGGATGATGGCAGTATTAAATGTATCCATGAAAATATAAAGAGTTAAAAAAGTATGAAAGGTGAATTAGAGTTTATTAGATGTGGTAAATATGATTATTGCAAGATTACTAAAGAATTAAAAGAAATTATACACTATAAAAAATTATAAGAGGGGTAATAAAGTGGCAGGTACAACCTCATATATAGATAAAGAAACAAAAGTAAATATTTAAGAGGATGATGATTTTTTTGTTAAAATTCACAAGTTATTTGATGAATATGCTTTAAGTATTATTGGAAGAAGAGAAGTTCCTCAAAAAGTATATGATGTTCTACCAAGTAATTTATCTGATTGTCCAATCTATAGTGAACTAGAAGAACAGTTAATAAATAAAGAGTTGCTTTTATAAGAAGCATAAAGTCAAATTGAATGTTTAAAAGATATAATAGATTTTTTAAAAAGATAACACTACCGTAGTAGAAATTAATATGGCAAGATAAGTGAAAGCCTGGATAAGTTTATATAGAAGTATACAAGAGCATTGGTTATAGCAAGAGAAGCTTTTTTCAAAAAGACAGGCATGACTGAACATTATTTTCTTAGAGAATGAATTGATAATTGGTGCAAGAGGTAGCTTCATAACATCACCAAAAAAGTTGATCCAAAAATGGGGATGGGGTTATAAAAAGACCAGAAGATTTTTAAAAAGAAGCGTTATGTAATACTATATTTGGATTAAAAGATTTAAAATAGGTAATACTACATTTACATTAAAAGACTTAAAACAAGTGGTATAGGAACTAGTACAAGCGGAAGAAGTTATAGAGAAATTAAAATAAATTACAGGATTTATATCCCTGATGATAAGGAGGAAATATGACACCGATAGAAATAATGGAAAAGATAGGGGCATGTCAACGGGGGCTGACGAAAGGGAATATAGAATTAAAAGCTTTAGGAGTGAAGAAGGCTAGAGCAGAACATGACTATAGGATAGCTCTAAGAAAAGAGATTTTAAGATTAAGACAGTTAGAGAATCAGCCAGCAACAATAATAAATGACTTAGCTAAAGGAAAAGAAGATATTGCAAAATTAAGACTTGAAAGGGATATAGCAGAAACTAATTACAGTGTATATATAGAAAGTATGAGGAATTTAAGATTAGAGATTGAGGCGTATAGAAGTTTTCTCACATGGGAACGTGTAGAACTTAAAAATACGTAATGTTAAAATTATGATGAACTAAAGAGAGGTAAAGAAGACCTCTTCTTTTCTGATGTAAATTATTATTGATTGCTTAACTCTGATTTTATTTAATTTATCTGCTATTGTTTCATGTGCACCAATAAGATGAGGAAGATTTTGTAATTCTAGTGAGTTTAAATTTGACATAAAATCACCTCTTTAATAATTAGTTCAATAATATTATTGGAAAGAGAATTAAAAATTATACAGTGATGTTTAATACTTAAATATAAAGTTGAGTGAGCTCATGGCAAAATTCAAATATTGAACTAAGATAAAAGATAAGCTTGTATTAGCTGAAGAAAGGGCAAGAAATGAAGTAAGTAATGGACAAATAACAAAGAATCTAGGGATAGATAAGGGTATATTTTATAAATATAAAAAGCAAGTATATAGGATTTTTTATATCTTAGAAAGGGGGAAGGAGATAATGATGATAGATTTTGGAATTAAAGATTCATTTTTAAAAAGAACATTAGAATATAAGTATAAGGAAGTAACCAAGGAATTAGTATAAGATCATAGGACTAAATTGTATACATATATAATAACTTTGATCATTATTAAATATGTATAATAAATAATAAATATATCAGTAACATAATGTTGTTTGTGAACATATTATATTAAGTAATATAGATTAGAAATATTTTGGAGGGTAACTTTGAAGATTAGTAATATTAAAGAAATAACATTATTTGAGCATCATTTTTGGTTACAGATTTTAGGAGATCATTCTAGATTTATTTTAAACTCACTCTCACCAAAAGAAAAATCTTTTATTGAAGAAGCAAACAGATTTAAAAATTTATTTGATAATTTATTAAAGAAATCAAAACAATCACTTTCAGAAGAAGAGCTTTTCGCTTTAAATAATCATGCCTATAATGCAGCTATGAAAATTAGAGAGTTTAAGCTAGATATAATTGATAGGCAGATTACAGATAAAATTGTCATTTCATTGCCACCTACATTTATTAATCATATGGTTAACGAAGTTGATGAATATATATTTATATTAACTAAATTAATGAAAGGAAATGTATCTAATATAGGACCTATTCATCTCCATCTTTTATGGCTTCCAGATGGAGCAGGTCATGCATCCAATATAGCTAGTAGTCTTGATATAACGGAGAAAGAATTGATTAAAAAGAGTAATCAATATTCTAAAAAATTTAATAATTTATACTTAAGGACTATAGAGTACAATGGTTATACAAGAACTGGTATTTGTGATTTCCCAGCACTTGATAGTCTAAATAATAATGCTGACGAAACAATGAGTTGTTTTAAAGAATTTTTAAATGAATTAAAGAAAGGTGTCATAGAAAAGAAAATACTTGGAACTATTGTACCACTAGTACCCGATCATATGTTTAGAGAAGAATGTTACTATTTAACTAAGCTTTCAATGGTTTCAAACATAAAAAAACCCGAATGTGATCCTACAAAATCAAGAGTAGAGAGCTAAATTTAACAAAGCAAAAGAGTCATATTTTATTATCTAAGGTTCTTTTGGTATGATTTTATTATATAGATTGATGTAGTATATTAGTTTATTTTTATTATACCAAGGTATAATAATCCTAATCATAAAGTTATCAACAATATGCATAATAAAAGGGTGACAATTACAATATTGTCACCTGAATTTTTCCTACACCAGTTTGAAATTATCATGATTTGATGAAAAATCCTATAAATTTCAAACTTAGTAATATCAATGAATAGAAGTATTTATAAATTTTATAAAGACAAATTAAAAGGGAGCTATTCAAAAAGCTACAATTTAGTAATATAAATGACTGTAGCTTTTTATTATGTTTTTTATATAGAATTTTTAATATAAATTATTAATAAGGCTTGCTTAGTTGAAAATTAGAAATTGAGTTTTAAATATTTATAATCCTATTACATTCATTTGCAATATTTTTATCATAGGTTACTATTACAATTGTTTTTCCTTTTTTATTTAAAAGTTTTAATAGACCTATTATTTTATAGGAATTTTCTTCGTCCAGTGAGCCAGTAGGTTCATCTGCTAATATTGTTATTAGGAAGGATTAGAAAAAATATTGACAGGTCTTAAGAGGTGATGTATAGTTTTATTAAGCGGTATAATTTACTACTTAATAAAACTATTTTTACTATTTATTATTATATTATATAGGGGACATTCTTATTTACGCCTCTTTATTTTATTTTTATTTAAAAGGATTTCTATTGATATATAGAGGTCCTTTTTTATTTAAAAGATTTTTGTTAATATAAAAATTTTTTTATTTCAAATCATATATATAACAAATTAAATAATTTAGAAAATATAATATTAAAAGTCTATAAATATTTTTAATTTAATAAAATAGAGAATTTAATAAAGTTATAACTTTATCTGAATATAATAATATAAAGAGAGGAGGAGTAGACTTGAAACTAACTTATGTATTAGATACTAATGTTATTTTGTATTCACCAGGAGCTATATTTTCTTTTGCAGATAATGATGTAGTTATACCTGAAGTAGTTTTAGAAGAATTAGATAGCTTTAAAAAGAATAATTATGATTTAGGGGCTAATGCTAGGCATGCAGCAAGAGTAATAGATAAATTAAGAAAAGATGGAAGTTTAATAGATGGTATAGTATTACCTGGTGGAGGAACTTTAAGAGTAGAAATGAATCATTATGATGTAAAATTGCCTCCGTCTTGGGATAAGAATAAGCCGGATAACAGAATAATACAGGTTTGTAAGGGATTAAAAGAAAAAGGGGAAGAAGTAGTATTAATTACAAAGGATACCTTTGAGAGGATAAAGGCGGATACTATTAATATAGATGTAGAGGATTTTTATGAAAAGGTAGTACCAGAATATGAAAGTCAATATAAAGGAAGATGTGATGCTTTTGCATCTCACAGTACTTTAGAAAGTTTTTATAAAAATAAATATATGGATGTAGAGAGCTTATTTTTTTATTCAGAAGAGAAAAATGATTACTATAAAGCAGATATCAATATAAATGAATTTATATTAATTAAATCTATGGAAAATCCAAAACAAACAGCTCTGGGAAGATATAATGGAGAAAAAGTTGTTCCTCTTTTTTATAAAGACGTCAAGCCTCTAGGAATAAGTCCTAGAAACATAGGACAAAAGTTTATGTTAGAAGCTTTTTTAACAGATTCTAAAAATGCACCTTTAGTTATAGTAAAGGGACCTGCAGGTACAGCCAAGACTTTATTCTCTTTAGCTACAGGACTTCATAAAGTTATGGAAGAGGGAGAAGATGGATATAGAAAAATTTTAATCTGTAGACCTAATGTAACTATGGATGAAGATATAGGGTTTTTACCTGGAACAGAGGAAGAAAAAATAATGCCTTTTATGAGACCCATTTTTGATAATTTAGAGATTTTAGTGGATTCTGATGAAAAGGAAAGATATAAAAATGAAAAAGAATTATATGATAAGATAAAAGAGCTATTTGATAGGAGAATTATAACTACAGAAGCAGTAGCTTATTTGAGAGGTAGATCTATAGTGAAAAATTGGGTTATAATAGATGAAGCTCAAAATTTAACACCAAAGCAGGTGAAGGCGGTTATAACTAGAGTAGGACAAGGAACGAAACTTATATTAGTAGGTGATCCAGATCAAATAGATCAACCGTTTTTAGACTCTAGATCAAATGGTTTATGTTATGCATCAGAAAAAATGAAAGGAAGCAAACTTTGTTATCAGGTAACATTAAAGGATCATGAATGTGAAAGATCACCATTAGCCTATGAGGGAGCAAAGCGATTATAATTTTATACTATATGTAAGTAGAGGGCGCCTCAAAATCAAATATATTTTGTGGTGTCCTCTATATTTTATATGATATAATTTATTACAATTGCACTTATGTAAGTTAATGTATAAATAGTTTTAATTTGGAAAATATATTGCAGTTTAAAGGGAAATAAAATGAATTTTAGGAAGTTTTACAATATTTCATAAAGCTTACTATTTAAAAAAATTTATATTTAGTGTACAATAATGAAAGATGTAAAATAAAGAGAAAGGAATTTTTAGATGGAAAATAAAGAGAAAAAGTCGAAAAATAAGAAATTTTCTTTTAAAATATTTTTATATTTTATAATTTTTGAATTGTTTTTTACAGCAGCCACAGCGCCTTTTATAATATTCCATGGTCCTTTTAAAAATGTTAAAAAGACTATGGTAGGAGCAGCTATGACTACTTTAAAACATCAATATATAGCTAAAACATTTTTATCAGATGCTAAAATAAAAGAGATATTAGGTGAAGATTCTATACAAACTATAAAACAAGATAAGAACTCTGTGTTAAAATTTGAAAACAAACATGATAGTACAATAGAAAGATATGATATAAGTTATGGTAAAAAGTTCAAAGGATATATGTTAGTAGTTCATGATCCATCTAGGGTAAAGGTTGGATATAGTTCTAAGTTACCAGTACAAGGAGAACTTACAAGTCAGATAGCAAGAAATAAAAGAGCTGTTGCAGCTATTAATGCAGGTGGCTTTACAGATAAATCAGCTAATAGCAAGTGGACAGGTACCGGTGGAAATGTTGAAGGGGTAATAATTAGTAAAGGTGAAGTTAAATATAATAGTAATAAGCAAGGAGAATTTACAGGAGATGTAGCAGCTATAACTAAAAAGGGGGCTTTAGTTGTAGGTAAACATAGTATACAAGAATTAAAAGATTTAAATGTACAAGAAGCTATAACTTTTGGACCAGCCTTAGTAGTAAAGGGGCAAGGCACCATAACTTCTGGAGATGGCGGATGGGGAATGGCGCCTAGAACTGCTATTGGACAAAGAGAAGACGGAGCTATACTTATGCTGGTTATAGATGGTAGACAAGCATCTAGTTTAGGAGCTACATTAAAAGATGTACAAGATATCATGTTACAATATGATGCATATACTGCTACAAATTTAGACGGTGGATCTTCAACTACAATGTATCATGAAGGAGAAGTTATAAATAATCCTGCTAATTCTTTAGGAGAAAGATCAGTACCATCTATTTTGTATGTTGAACCTTAG

Protein sequences of DBSCAN-SWA_1

>NC_009698|559688:569102|563654_564002_+|WP_003356906.1|DBSCAN-SWA
MTPIEIMEKIGACQRGLTKGNIELKALGVKKARAEHDYRIALRKEILRLRQLENQPATIINDLAKGKEDIAKLRLERDIAETNYSVYIESMRNLRLEIEAYRSFLTWERVELKNT
>NC_009698|559688:569102|566453_567830_+|WP_011986336.1|DBSCAN-SWA
MKLTYVLDTNVILYSPGAIFSFADNDVVIPEVVLEELDSFKKNNYDLGANARHAARVIDKLRKDGSLIDGIVLPGGGTLRVEMNHYDVKLPPSWDKNKPDNRIIQVCKGLKEKGEEVVLITKDTFERIKADTINIDVEDFYEKVVPEYESQYKGRCDAFASHSTLESFYKNKYMDVESLFFYSEEKNDYYKADININEFILIKSMENPKQTALGRYNGEKVVPLFYKDVKPLGISPRNIGQKFMLEAFLTDSKNAPLVIVKGPAGTAKTLFSLATGLHKVMEEGEDGYRKILICRPNVTMDEDIGFLPGTEEEKIMPFMRPIFDNLEILVDSDEKERYKNEKELYDKIKELFDRRIITTEAVAYLRGRSIVKNWVIIDEAQNLTPKQVKAVITRVGQGTKLILVGDPDQIDQPFLDSRSNGLCYASEKMKGSKLCYQVTLKDHECERSPLAYEGAKRL
>NC_009698|559688:569102|562564_562774_+|WP_011986136.1|DBSCAN-SWA
MLKAKEKALPKGFNEARFLQNCMTVLKDIKNIEKCNEVSVVRTMLKGVFLGLDFFNKECYAIPVYLNLF
>NC_009698|559688:569102|564687_565497_+|WP_011948236.1|DBSCAN-SWA
MKISNIKEITLFEHHFWLQILGDHSRFILNSLSPKEKSFIEEANRFKNLFDNLLKKSKQSLSEEELFALNNHAYNAAMKIREFKLDIIDRQITDKIVISLPPTFINHMVNEVDEYIFILTKLMKGNVSNIGPIHLHLLWLPDGAGHASNIASSLDITEKELIKKSNQYSKKFNNLYLRTIEYNGYTRTGICDFPALDSLNNNADETMSCFKEFLNELKKGVIEKKILGTIVPLVPDHMFREECYYLTKLSMVSNIKKPECDPTKSRVES
>NC_009698|559688:569102|559688_561917_+|WP_011948233.1|DBSCAN-SWA
MIIKKKLLLKGLHCANCATKIERAVQKLNIIEEANYNFNNSTLIINLEETHKDSIIKTIQEIVDRIEPGVKVVDKENLKRTVVHAPVKNSSNLKMQNNKEENLKLDKKENSYEHNHDHSHGHSHDGEDSDELEKKTLIRIISGVVLLILATVLKSKETLSIGLYLTSYVLIGGKVILSSIRNISKGQVFDENFLMAVATVAAIGVKQYPEAVAVMLFYEVGEFLQDKAVNKSRKSITALMNIRPDYANLVRGEDIEVVSPEDINIDDIIMVKPGEKIPLDGIVVEGQSFVDTSAITGESLISEVSKDSNVLSGYINKNGVIKIKVTKTFGESTVSKILELTENASATKANTEKFITKFARYYTPVVVFAALALAVIPTLILKDPDISKWIYRAAVFLVVSCPCALVISIPLSFFAGIGGASKKGVLIKAGTALEALNDADTIVFDKTGTLTKGVFKVSKIDSEEGVNTEELIEYAAYVESYSNHPIAKSILKYYEKTIDNKRIEGYEEIVARGVTAYIDGKKVYAGNNKLMEELNINYKKAQEDGVILYIALEDKYIGYIVINDEIKKDSKETIKSLKDIGIKKAAMLTGDRKSTANNIGTFLGMDEIYSELLPQEKVEKMQSLKSKTSKDGKIVFVGDGVNDAPVLAMSDIGVSMGGLGSDAAIEASDLVLMSDEPSKLVDAIKIARKTHKIVWQNIIIVLIIKFAVLALAVMGKSTMWMAVFADVGVALIAVINALRILK
>NC_009698|559688:569102|568097_569102_+|WP_011948238.1|DBSCAN-SWA
MENKEKKSKNKKFSFKIFLYFIIFELFFTAATAPFIIFHGPFKNVKKTMVGAAMTTLKHQYIAKTFLSDAKIKEILGEDSIQTIKQDKNSVLKFENKHDSTIERYDISYGKKFKGYMLVVHDPSRVKVGYSSKLPVQGELTSQIARNKRAVAAINAGGFTDKSANSKWTGTGGNVEGVIISKGEVKYNSNKQGEFTGDVAAITKKGALVVGKHSIQELKDLNVQEAITFGPALVVKGQGTITSGDGGWGMAPRTAIGQREDGAILMLVIDGRQASSLGATLKDVQDIMLQYDAYTATNLDGGSSTTMYHEGEVINNPANSLGERSVPSILYVEP
>NC_009698|559688:569102|564020_564170_-|WP_011948235.1|DBSCAN-SWA
MSNLNSLELQNLPHLIGAHETIADKLNKIRVKQSIIIYIRKEEVFFTSL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011948233.1|559688_561917_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.7e-106	34.1
WP_011986136.1|562564_562774_+	recombinase RecT	H7BUU1	unidentified_phage	1.6e-14	63.5
WP_003356906.1|563654_564002_+	hypothetical protein	A0A0A7RTL9	Clostridium_phage	1.7e-29	60.5
WP_011948235.1|564020_564170_-	hypothetical protein	NA	NA	NA	NA
WP_011948236.1|564687_565497_+	DUF2935 domain-containing protein	A0A2I2L551	Orpheovirus	3.0e-45	40.6
WP_011986336.1|566453_567830_+	PhoH family protein	A0A141HS37	Bacillus_phage	3.0e-106	44.3
WP_011948238.1|568097_569102_+	phosphodiester glycosidase family protein	A0A1P8CWN9	Bacillus_phage	4.3e-09	30.7

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_009698|874374:886093|DBSCAN-SWA
ATTAATTAGTAATATCTATATGCAATCTTATATTATAGTTATTTAATTCTGTAACTTCTACTTTTAATATATAAATTGCACCATTTAATAAACGTATTGAATTGGTATTATTTAAGAGGTGTAAATTTTGTTGTATATTAATTAAATTATAGCCGTCAATAGTTTCAGTGACTCTAAATAAAGTACCTATTCCTTGGTTATAACTAGTATAAAGCCTAATGTTAGATGTATCTTTATTATTAAAGTTACCAGGTATTGTAAATTCATATGAAATATAGTCATGGACATCAGGGCTTTGTCTTGTATAGTAATGTGCACCTGTTGAATTAAGATTATCTATTATATTAACTGAAGAATTCATTAAATTTCGGAGATCCCCTTCTTCTCTCTTGAATTGTATTTGATTTTCTATATTAGAAGAAGTTTGTGGTACTCTAATGTAGTAATTTTTATCCTTATTAAGCAAAACAACTAAATAACTTTTAGCATTAGGACTGTCAAACCCAGTAATATAATTTATTGCTTTAATATCATCATCACATAAATTCCCAGATTGGAAATTTCTATTACCAGAACCTATCGCTTCATATATTTTTAATGATGGTAGATTATTTTGAGCATTAATTTTATAAATTCCTGTAGTATTTACTGTAAATAATATATAAAATGGATTATTATTTACAATACCTGGAATGTTATATGTGTAATTATCTGAAATAGCAGTATTTATTTCTTGTATATTTTCAGATGGGTCTATGACACCTACTACAATTTCTTCCTCGGGACCATTTTGTATAAATCCATCTTCAGCCACTTGCATTTTAACTACTTCAGATTCAGGTGAAGGAGCATTAGTTACTTCACAATATCCTAAGGAAGGAAGATAATACTCAGCTTTATTAACAATACTTCCATTTTGATAGTCTATTAATTCATATTTTTCATAGGTATTATAAGCCTTTATGCATATATTTTTATCTGAAGGAGCTTCTTCTACAAATTTAAATAACGATGTTGATGTATTAAATAATTGTACATTGAAAGCGTCTTTAAGTCTTTCTTCAGTATATTGTTGTGAGAATTTTGTATCATTACTTGTGGTGAATAATGGTCTAGTTGTATTTCTTAATCGAGGTTGTATAATACTTCCTGATGAACCTGCTTCGATTAATAATGTACCTATCAAATCTTTATCATTTGTTCTTATATATCCATCACCCTTATTAATAACATATAGCCCATTACTATAAGGCAATACTCGTTGTGTGCTACTAACTTTAGAATTAAAAATATTGTTAGTTGGTATATTTTTAGTAGTTTCTAAAATTTTTTTATATAGGAATTGTTCATTTAAAATGCACTTATCATTAGTTAGAAAGTAAAAATCTTTATTTATTTTTTCCCCTGGATTAAATTCTATAGACTTAACATATCCAAGAGATGGAACATATAAAACTGCTCTTTCTATAATTTCATGTTGTAAGACTTTTATTATTTCATATCTAATGTAGGTATATTGTAAATACATATATAAGTTTTTATTTGAGGGAGCGGTTTTACTAAATTCAAATCCTATTGGAATTTGATTAGCTTCAGTAAAGTTAGTAAATACAGTTTGTATATTATTTTTTATATATTCTTCATTGAAAGATGGTGTTGGATAATAATATGGTATCGCATTATCATTTACACGTAGGTCCCCAACTATTCCTGTTGATCCATTACTAATTACACTTCCACCTAATATTTGATTTTGTCTAGATAATATCCATCCATCCCCTCTTCTAACTACATAATTACCATCAGCTAAATCAATAGTATCACTATAGTTTATAACTTTTTCTTGTATATCATTATAAATTTTTTTTATAGATGAATTCATACACTTTTCTCCTTTATATTTTTTCAAGTTTGAACATTTGATTTGAATTGTATATATCAAAATTCGGTAATAGGAGTAGTGGTTGGCTTAAAATATTTTCATTAGTATCATAAATGTCCCAGGCATAATCTAATTCATTCACTTTATTTAAACTTAACATAATATAAGTATTTACAGCAATTTTAATAGGAAACCAGTAGCATCTATTGGATAATGAATCTAAAGAAATAAATCCAAAGTTATCGTAACTTAAATACTTATTTGGTTCTGCTACATTAGAGATTTTAAAGCATCTATTTTCAGCCATATATTCTACATTCCATTTTTGATTATTTGCAGAAGATTCATTTGAAAATGTTAATGATTTCGATACAGGATTTAAATATAAAGAACCAGAAAAGATAGATTTTATATTGTAATTACCATTAGGTAGAAAAGTTCTTTCAACTGACATATAATTCACCTCTTTATAAATTAGATGATAGTACTCATATTAAATCTTTGTTAATATTAATTTTATGGGTTACGAATATTCCATTTCTGATTATCATCTCCATGATAATTAAATACTTGAATAGCAGTTCCGTTTGCTGTTTGGCCGCCATATAAATCTAGAGCTTTAGTTGTATCGCGTAGATTAGTAATTGTATATGTTTCATCAGTATCTGAAACAGGATTTATAAGCCAATATTGGGCGTCATTATTTTGATCATTAGAAGAAGAAACCCTTACAGTATTACCATTTGAAAAAATCCATGTTAGAACTCCGTTTGAAAGTATTGTATTAAAAAACTGGTATGCTGCTTTTTCTTCATTATATCTAATTGTCCATTTTTGATTGCGACCATAGTCCCAAGTATATAAATTAACATTTAGATTTGTCACATCCACTTGTTGTACAACTTTATTAAGATCTAATATTGGACTTATTTTACATGTGAAATTGTTAAGATCTGATATTATATAATCTTCTATGATAAATTTTATATAATTTGAATTATTAAGTGTGCTAAGCTTCAAATTACGAGCTACGGTATCAGCATATAATACTAAGTTAGGGTTTTTATAACTTGCAATAATAAATGAATTGTTACCAATGTCTTTTAATAATAACCAATATTGATTATCTGCATTTGAATCTTGTTGCGTTGATATATTATGTGTTGGTGCATTCCATGTTAAAACTAAATTAGTATTATGGATATCCATACTTTTTATTTTATAAGCAGCTTTATTAGAATCATATATAAGTCTCCATCTTTCAAGGTAATTTCTAGTTTGTTGAAATAAGCTAACGTTACCGGCAACTTGATAAAAAAATAAATTAGTATCGGCCTTACAGGAGATGGTAACAATTTTGTCATTTAATGAATTTTGGATTACTGAATAGTGTTCCATTATGATTCCTCCTTTATTTAAGAATTAATCTTACATATAACATATAACATAATCAAATTATTTTTTGTAAACCTAAAATTTAAATATATCAAATTTTTATTAGTATGTTTACATAATTGATTATGGATATTTCGTAAAAATGGCTTATTAAAAATTTAAAGGCAATTAGTTTATTTATAGTATAATAAAAAAATAATATGTATATTATGGAAGGGTAGTGGTAAATATGAATAAATTGTTTTTACAAATTAAAATGTTAAAAAATGACAATAGGGAGTTTCAAGAAATTTTTAAGCATTTTGAAAAAACTATAAATATATTTACTAGAAAATATAATATATATGATAATTACAATGATATTTTGTACCATTTATGGTATACACTTAAAAAAGTTGATTTGAGCAATTTCAATACACAAAATGATTTAGAGAGATATATTAGTAGGACTTTAAAAAGATATTGCTTAGATATTTGCAATAAAAGAAAGATTGATAAGAAAATAATATATAATTCAGAAATTGTAGATAAGAAATTAAGCTTAATAGCAAATAGTTATTCAAGTTATTTAGAATTTGAATTTAATGATTTAATATCCATATTACCTGATGATCAAAAGAAAATTATATATATGAAATTTGTTGAAGATATTAAGGAGATAGATATAGCTAAAAAACTTAATATAAGTCGTCAATCTGTATATAAAAATAAAATAATGGCTTTAGAGAGATTAGAACCCATATTGAAAAAATTAATTAATATGTAGTTTATATTTTTAAAAAATTTTAGGTTTACAAAAAATAGTGTGGCTATGTTATATATAAATGATAAGAATATACTGAAAAATGTATCCAAAATTTAAGGGGGCGTGTATAGTAAATAATTAAAAGTATGTGCGTTGAAATAAATTTAGGAGGGTGGTTAGATATGAATATAAATGACAACTTAAGTATAAATTCCCCGGTAGATAATAAAAATGTTGTAGTAGTTAGAGCTAGAAAAACTGATACGGTTTTTAAGGCTTTTAAGGTTGCTCCCAATATTTGGGTGGCGCCAGAGAGATATTATGGCGAATCTTTGAGTATAGATGAAGAATATAAAGTTGATGGGGGAATATATGATTCTAATTTTCTTTCACAAGATAGTGAAAAAGATAAGTTCTTACAAGCCATTATTACTTTGTTAAAAAGAATTAATAGTACTAACGCTGGGGAAAAGTTATTATCTTTGATTTCTACAGCTATTCCATTTCCTTATGGATATATAGGTGGAGGGTATTATGCACCTAATATGATTACTTTTGGATCAGCACCAAAATCTAATAAAAAATTGAATTCTTTAATTTCAAGTACTATTCCATTTCCTTATGCAGGATATAGAGAAACAAATTATCTTTCATCTGAAGATAATAAAAGTTTCTATGCATCTAATATAGTTATTTTTGGTCCAGGAGCAAACATAGTAGAAAACAATACTGTTTTTTATAAAAAGGAAGATGCAGAAAATGGAATGGGAACAATGACTGAAATATGGTTCCAACCATTTCTAACCTATAAATATGACGAATTTTATATTGATCCTGCAATAGAATTAATAAAATGTTTAATAAAATCTCTTTATTTCTTATATGGTATAAAACCTAGTGATGATTTAGTTATTCCATATAGATTAAGAAGTGAATTAGAGAATATAGAATACTCACAATTGAATATAGTTGATTTACTAGTATCTGGAGGCATTGATCCTAAATTTATAAATACAGATCCATATTGGTTTACAGATAATTATTTCTCAAATGCAAAAAAAGTGTTTGAAGATCATAGGAATATTTATGAAACAGAAATTGAAGGAAATAATGCCATTGGTAATGATATAAAATTGAGATTAAAACAAAAGTTTCGAATCAATATCAATGATATATGGGAATTAAATTTAAATTATTTCTCTAAAGAGTTTAGCATTATGATGCCAGATAGATTTAATAATGCACTTAAACATTTTTATAGAAAACAATACTACAAAATAGATTATCCAGAAAATTATAGTATAAATGGTTTTGTTAATGGTCAAATTAATGCTCAATTATCTTTATCAGATAGAAATCAAGATATTATAAATAAACCTGAAGAAATAATTAATTTATTAAATGGAAATAATGTTTCATTAATGAGAAGTAATATTTATGGTGATGGATTAAAAAGCACTGTAGATGATTTTTACAGTAATTATAAAATCCCATATAATAGAGCCTATGAATATCATTTTAATAATTCAAATGATTCTTCTTTAGATAATGTTAACATTGGAGTAATAGACAATATTCCAGAGATTATAGATGTAAATCCTTATAAGGAAAATTGTGATAAGTTTTCACCGGTACAGAAAATTACAAGTACTAGAGAAATTAATACAAATATACCATGGCCTATAAATTATTTACAAGCTCAAAATACTAACAATGAAAAATTTAGTTTATCCTCAGATTTTGTAGAAGTAGTTTCTTCTAAAGATAAATCTTTAGTGTATTCTTTCTTATCTAATGTAATGTTTTATTTAGATTCCATAAAGGATAATAGTCCTATTGATACAGATAAAAAATATTATTTATGGTTAAGAGAGATTTTTAGAAATTATTCTTTTGATATTACTGCAACTCAAGAAATTAATACTAATTGTGGTATTAATAAAGTAGTAACTTGGTTTGGGAAAGCATTAAATATTTTAAATACATCTGATTCTTTTGTAGAAGAATTTCAAAATTTAGGGGCAATTTCACTTATTAATAAAAAAGAAAATTTAAGTATGCCAATAATTGAGAGTTATGAAATCCCTAACGATATGTTAGGATTACCACTAAATGATTTAAATGAAAAATTATTTAACATATATTCTAAAAACACAGCTTATTTTAAAAAAATCTACTATAATTTCCTAGATCAGTGGTGGACACAATATTATAGTCAATATTTTGATTTAATTTGTATGGCTAAAAGATCAGTGTTAGCTCAAGAAACTTTAATAAAAAGAATAATACAAAAAAAATTGAGTTATTTAATAGGAAATTCTAATATATCATCTGATAACTTAGCATTGATGAATCTTACAACAACAAATACATTAAGAGATATTTCAAACGAATCACAAATAGCAATGAATAATGTAGATAGTTTTTTAAATAATGCCGCTATATGTGTTTTTGAAAGTAATATATATCCTAAATTTATTTCTTTTATGGAACAATGTATTAATAATATAAATATTAAGACAAAAGAATTTATACAAAAATGTACTAATATTAATGAAGATGAAAAATTACAATTAATTAACCAGAATGTTTTTAATAGCTTAGATTTTGAATTCTTAAATATTCAAAATATGAAAAGTTTATTTAGTTCAGAGACAGCATTACTTATAAAGGAAGAAACTTGGCCTTATGAACTAGTGTTATATGCTTTTAAGGAACCAGGTAATAATGTTATCGGAGATGCATCTGGTAAAAATACATCAATAGAATATTCTAAGGACATAGGTTTAGTTTATGGAATAAATAGTGATGCATTATATTTAAATGGATCTAATCAAAGTATAAGTTTTTCTAATGATTTCTTTGAGAATGGATTAACTAACAGTTTTTCAATTTATTTTTGGTTGAGAAATTTGGGCAAAGATACTATTAAATCTAAGTTAATAGGTAGTAAGGAAGATAATTGTGGTTGGGAAATTTATTTTCAAGATACTGGGTTGGTTTTCAATATGATAGATTCTAATGGAAATGAGAAGAATATATATCTATCTGATGTTTCTAATAATAGTTGGCACTATATAACTATATCTGTAGATCGTTTAAAAGAACAATTATTAATATTTATTGATGATAATTTAGTGGCTAATGAAAGTATTAAGGAAATTTTAAATATCTATTCAAGTAATATAATTTCTTTATTAAGCGAGAATAATCCAAGTTATATTGAGGGATTAACTATTTTAAATAAACCCACTACAAGTCAGGAAGTTTTGAGTAATTATTTTGAAGTTCTAAATAATTCATATATAAGAGACAGTAATGAAGAACGATTAGAATACAATAAGACATATCAATTATATAATTATGTATTTTCAGATAAGCCTATATGTGAAGTTAAACAAAATAATAATATATATTTAACAATTAATAATACAAACAATTTAAATCTACAAGCTTCTAAATTTAAATTATTAAGTATAAATCCAAATAAACAATATGTTCAAAAACTTGATGAGGTAATAATTTCTGTATTAGATAATATGGAAAAATATATAGATATATCTGAAGATAATAGATTGCAACTAATAGATAACAAAAATAACGCAAAGAAGATGATAATTAGTAATGATATATTTATTTCCAATTGTTTAACCCTATCTTATAACGGTAAATATATATGTTTATCTATGAAAGATGAAAACCATAATTGGATGATATGTAATAATGATATGTCAAAGTATTTGTATTTATGGTCATTTAAATAATTAATAATTTAATTAATTTTAAATATTATAAGAGGTGTTAAATATGCCATTTGTTAATAAACAATTTAATTATAAAGATCCTGTAAATGGTGTTGATATTGCTTATATAAAAATTCCAAATGCAGGACAAATGCAACCAGTAAAAGCTTTTAAAATTCATAATAAAATATGGGTTATTCCAGAAAGAGATACATTTACAAATCCTGAAGAAGGAGATTTAAATCCACCACCAGAAGCAAAACAAGTTCCAGTTTCATATTATGATTCAACATATTTAAGTACAGATAATGAAAAAGATAATTATTTAAAGGGAGTTACAAAATTATTTGAGAGAATTTATTCAACTGATCTTGGAAGAATGTTGTTAACATCAATAGTAAGGGGAATACCATTTTGGGGTGGAAGTACAATAGATACAGAATTAAAAGTTATTGATACTAATTGTATTAATGTGATACAACCAGATGGTAGTTATAGATCAGAAGAACTTAATCTAGTAATAATAGGACCCTCAGCTGATATTATACAGTTTGAATGTAAAAGCTTTGGACATGAAGTTTTGAATCTTACGCGAAATGGTTATGGCTCTACTCAATACATTAGATTTAGCCCAGATTTTACATTTGGTTTTGAGGAGTCACTTGAAGTTGATACAAATCCTCTTTTAGGTGCAGGCAAATTTGCTACAGATCCAGCAGTAACATTAGCACATGAACTTATACATGCTGGACATAGATTATATGGAATAGCAATTAATCCAAATAGGGTTTTTAAAGTAAATACTAATGCCTATTATGAAATGAGTGGGTTAGAAGTAAGCTTTGAGGAACTTAGAACATTTGGGGGACATGATGCAAAGTTTATAGATAGTTTACAGGAAAACGAATTTCGTCTATATTATTATAATAAGTTTAAAGATATAGCAAGTACACTTAATAAAGCTAAATCAATAGTAGGTACTACTGCTTCATTACAGTATATGAAAAATGTTTTTAAAGAGAAATATCTCCTATCTGAAGATACATCTGGAAAATTTTCGGTAGATAAATTAAAATTTGATAAGTTATACAAAATGTTAACAGAGATTTACACAGAGGATAATTTTGTTAAGTTTTTTAAAGTACTTAACAGAAAAACATATTTGAATTTTGATAAAGCCGTATTTAAGATAAATATAGTACCTAAGGTAAATTACACAATATATGATGGATTTAATTTAAGAAATACAAATTTAGCAGCAAACTTTAATGGTCAAAATACAGAAATTAATAATATGAATTTTACTAAACTAAAAAATTTTACTGGATTGTTTGAATTTTATAAGTTGCTATGTGTAAGAGGGATAATAACTTCTAAAACTAAATCATTAGATAAAGGATACAATAAGGCATTAAATGATTTATGTATCAAAGTTAATAATTGGGACTTGTTTTTTAGTCCTTCAGAAGATAATTTTACTAATGATCTAAATAAAGGAGAAGAAATTACATCTGATACTAATATAGAAGCAGCAGAAGAAAATATTAGTTTAGATTTAATACAACAATATTATTTAACCTTTAATTTTGATAATGAACCTGAAAATATTTCAATAGAAAATCTTTCAAGTGACATTATAGGCCAATTAGAACTTATGCCTAATATAGAAAGATTTCCTAATGGAAAAAAGTATGAGTTAGATAAATATACTATGTTCCATTATCTTCGTGCTCAAGAATTTGAACATGGTAAATCTAGGATTGCTTTAACAAATTCTGTTAACGAAGCATTATTAAATCCTAGTCGTGTTTATACATTTTTTTCTTCAGACTATGTAAAGAAAGTTAATAAAGCTACGGAGGCAGCTATGTTTTTAGGCTGGGTAGAACAATTAGTATATGATTTTACCGATGAAACTAGCGAAGTAAGTACTACGGATAAAATTGCGGATATAACTATAATTATTCCATATATAGGACCTGCTTTAAATATAGGTAATATGTTATATAAAGATGATTTTGTAGGTGCTTTAATATTTTCAGGAGCTGTTATTCTGTTAGAATTTATACCAGAGATTGCAATACCTGTATTAGGTACTTTTGCACTTGTATCATATATTGCGAATAAGGTTCTAACCGTTCAAACAATAGATAATGCTTTAAGTAAAAGAAATGAAAAATGGGATGAGGTCTATAAATATATAGTAACAAATTGGTTAGCAAAGGTTAATACACAGATTGATCTAATAAGAAAAAAAATGAAAGAAGCTTTAGAAAATCAAGCAGAAGCAACAAAGGCTATAATAAACTATCAGTATAATCAATATACTGAGGAAGAGAAAAATAATATTAATTTTAATATTGATGATTTAAGTTCGAAACTTAATGAGTCTATAAATAAAGCTATGATTAATATAAATAAATTTTTGAATCAATGCTCTGTTTCATATTTAATGAATTCTATGATCCCTTATGGTGTTAAACGGTTAGAAGATTTTGATGCTAGTCTTAAAGATGCATTATTAAAGTATATATATGATAATAGAGGAACTTTAATTGGTCAAGTAGATAGATTAAAAGATAAAGTTAATAATACACTTAGTACAGATATACCTTTTCAGCTTTCCAAATACGTAGATAATCAAAGATTATTATCTACATTTACTGAATATATTAAGAATATTATTAATACTTCTATATTGAATTTAAGATATGAAAGTAATCATTTAATAGACTTATCTAGGTATGCATCAAAAATAAATATTGGTAGTAAAGTAAATTTTGATCCAATAGATAAAAATCAAATTCAATTATTTAATTTAGAAAGTAGTAAAATTGAGGTAATTTTAAAAAATGCTATTGTATATAATAGTATGTATGAAAATTTTAGTACTAGCTTTTGGATAAGAATTCCTAAGTATTTTAACAGTATAAGTCTAAATAATGAATATACAATAATAAATTGTATGGAAAATAATTCAGGATGGAAAGTATCACTTAATTATGGTGAAATAATCTGGACTTTACAGGATACTCAGGAAATAAAACAAAGAGTAGTTTTTAAATACAGTCAAATGATTAATATATCAGATTATATAAACAGATGGATTTTTGTAACTATCACTAATAATAGATTAAATAACTCTAAAATTTATATAAATGGAAGATTAATAGATCAAAAACCAATTTCAAATTTAGGTAATATTCATGCTAGTAATAATATAATGTTTAAATTAGATGGTTGTAGAGATACACATAGATATATTTGGATAAAATATTTTAATCTTTTTGATAAGGAATTAAATGAAAAAGAAATCAAAGATTTATATGATAATCAATCAAATTCAGGTATTTTAAAAGACTTTTGGGGTGATTATTTACAATATGATAAACCATACTATATGTTAAATTTATATGATCCAAATAAATATGTCGATGTAAATAATGTAGGTATTAGAGGTTATATGTATCTTAAAGGGCCTAGAGGTAGCGTAATGACTACAAACATTTATTTAAATTCAAGTTTGTATAGGGGGACAAAATTTATTATAAAAAAATATGCTTCTGGAAATAAAGATAATATTGTTAGAAATAATGATCGTGTATATATTAATGTAGTAGTTAAAAATAAAGAATATAGGTTAGCTACTAATGCATCACAGGCAGGCGTAGAAAAAATACTAAGTGCATTAGAAATACCTGATGTAGGAAATCTAAGTCAAGTAGTAGTAATGAAGTCAAAAAATGATCAAGGAATAACAAATAAATGCAAAATGAATTTACAAGATAATAATGGGAATGATATAGGCTTTATAGGATTTCATCAGTTTAATAATATAGCTAAACTAGTAGCAAGTAATTGGTATAATAGACAAATAGAAAGATCTAGTAGGACTTTGGGTTGCTCATGGGAATTTATTCCTGTAGATGATGGATGGGGAGAAAGGCCACTGTAA

Protein sequences of DBSCAN-SWA_2

>NC_009698|874374:886093|874374_876255_-|WP_011948507.1|DBSCAN-SWA
MNSSIKKIYNDIQEKVINYSDTIDLADGNYVVRRGDGWILSRQNQILGGSVISNGSTGIVGDLRVNDNAIPYYYPTPSFNEEYIKNNIQTVFTNFTEANQIPIGFEFSKTAPSNKNLYMYLQYTYIRYEIIKVLQHEIIERAVLYVPSLGYVKSIEFNPGEKINKDFYFLTNDKCILNEQFLYKKILETTKNIPTNNIFNSKVSSTQRVLPYSNGLYVINKGDGYIRTNDKDLIGTLLIEAGSSGSIIQPRLRNTTRPLFTTSNDTKFSQQYTEERLKDAFNVQLFNTSTSLFKFVEEAPSDKNICIKAYNTYEKYELIDYQNGSIVNKAEYYLPSLGYCEVTNAPSPESEVVKMQVAEDGFIQNGPEEEIVVGVIDPSENIQEINTAISDNYTYNIPGIVNNNPFYILFTVNTTGIYKINAQNNLPSLKIYEAIGSGNRNFQSGNLCDDDIKAINYITGFDSPNAKSYLVVLLNKDKNYYIRVPQTSSNIENQIQFKREEGDLRNLMNSSVNIIDNLNSTGAHYYTRQSPDVHDYISYEFTIPGNFNNKDTSNIRLYTSYNQGIGTLFRVTETIDGYNLINIQQNLHLLNNTNSIRLLNGAIYILKVEVTELNNYNIRLHIDITN
>NC_009698|874374:886093|877879_878416_+|WP_011948509.1|DBSCAN-SWA
MNKLFLQIKMLKNDNREFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCLDICNKRKIDKKIIYNSEIVDKKLSLIANSYSSYLEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKNKIMALERLEPILKKLINM
>NC_009698|874374:886093|876268_876709_-|WP_003356711.1|DBSCAN-SWA
MSVERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI
>NC_009698|874374:886093|876771_877653_-|WP_011948508.1|DBSCAN-SWA
MEHYSVIQNSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNP
>NC_009698|874374:886093|882202_886093_+|WP_011948511.1|DBSCAN-SWA
MPFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEFYKLLCVRGIITSKTKSLDKGYNKALNDLCIKVNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDLIQQYYLTFNFDNEPENISIENLSSDIIGQLELMPNIERFPNGKKYELDKYTMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKATEAAMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVGALIFSGAVILLEFIPEIAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIINTSILNLRYESNHLIDLSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNWYNRQIERSSRTLGCSWEFIPVDDGWGERPL
>NC_009698|874374:886093|878577_882159_+|WP_011948510.1|DBSCAN-SWA
MNINDNLSINSPVDNKNVVVVRARKTDTVFKAFKVAPNIWVAPERYYGESLSIDEEYKVDGGIYDSNFLSQDSEKDKFLQAIITLLKRINSTNAGEKLLSLISTAIPFPYGYIGGGYYAPNMITFGSAPKSNKKLNSLISSTIPFPYAGYRETNYLSSEDNKSFYASNIVIFGPGANIVENNTVFYKKEDAENGMGTMTEIWFQPFLTYKYDEFYIDPAIELIKCLIKSLYFLYGIKPSDDLVIPYRLRSELENIEYSQLNIVDLLVSGGIDPKFINTDPYWFTDNYFSNAKKVFEDHRNIYETEIEGNNAIGNDIKLRLKQKFRININDIWELNLNYFSKEFSIMMPDRFNNALKHFYRKQYYKIDYPENYSINGFVNGQINAQLSLSDRNQDIINKPEEIINLLNGNNVSLMRSNIYGDGLKSTVDDFYSNYKIPYNRAYEYHFNNSNDSSLDNVNIGVIDNIPEIIDVNPYKENCDKFSPVQKITSTREINTNIPWPINYLQAQNTNNEKFSLSSDFVEVVSSKDKSLVYSFLSNVMFYLDSIKDNSPIDTDKKYYLWLREIFRNYSFDITATQEINTNCGINKVVTWFGKALNILNTSDSFVEEFQNLGAISLINKKENLSMPIIESYEIPNDMLGLPLNDLNEKLFNIYSKNTAYFKKIYYNFLDQWWTQYYSQYFDLICMAKRSVLAQETLIKRIIQKKLSYLIGNSNISSDNLALMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNIYPKFISFMEQCINNINIKTKEFIQKCTNINEDEKLQLINQNVFNSLDFEFLNIQNMKSLFSSETALLIKEETWPYELVLYAFKEPGNNVIGDASGKNTSIEYSKDIGLVYGINSDALYLNGSNQSISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKEDNCGWEIYFQDTGLVFNMIDSNGNEKNIYLSDVSNNSWHYITISVDRLKEQLLIFIDDNLVANESIKEILNIYSSNIISLLSENNPSYIEGLTILNKPTTSQEVLSNYFEVLNNSYIRDSNEERLEYNKTYQLYNYVFSDKPICEVKQNNNIYLTINNTNNLNLQASKFKLLSINPNKQYVQKLDEVIISVLDNMEKYIDISEDNRLQLIDNKNNAKKMIISNDIFISNCLTLSYNGKYICLSMKDENHNWMICNNDMSKYLYLWSFK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011948507.1|874374_876255_-	botulinum neurotoxin hemagglutinin HA70 subunit	Q786X9	Clostridium_botulinum_D_phage	1.3e-240	68.5
WP_003356711.1|876268_876709_-	hemagglutinin	Q786Y1	Clostridium_botulinum_D_phage	1.9e-46	63.0
WP_011948508.1|876771_877653_-	ricin-type beta-trefoil lectin domain protein	Q38196	Clostridium_botulinum_phage	3.5e-39	36.7
WP_011948509.1|877879_878416_+	botulinum neurotoxin transcription-activating sigma factor BotR	Q9ZWV5	Clostridium_botulinum_D_phage	2.1e-39	52.2
WP_011948510.1|878577_882159_+	non-toxic nonhemagglutinin NTNH	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	66.2
WP_011948511.1|882202_886093_+	botulinum neurotoxin type A	Q332E0	Clostridium_botulinum_C_phage	5.8e-179	32.5

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NC_009698|1655277:1662343|DBSCAN-SWA
ACTATGTCATATTTGAATATATATCATTAATTTTTTTACATTTATCCTTTATAATTTCTCTAATATGATTGGGTTCAAGTACTTCCACACATTCTCCGTAACTTAATATCATGGAATATATCCAGTCATCTTCTAATAAATATGTATCTACAATTACACTACCATCTTCTTGAAACTTTATTTCATCTTTATCAAAACAATCGTCTATTCTATATCTAACTCTTTCAGAAAACTTTAATACAACTCTTGTAGGTACTTGTTCACTCTCACTAATATTTATATATTCTTTATAGGAAATTCTATTTTCATTAATTTTTTCATGTGGAACAGTTAAATTTTCCATTCTTGATAATTTGAAAAGTCGGTAATCATTTTTTAATTTGCAAAAGGAAAATAAATACCATGAGAAACCTTTAAAAACAAGAGTTAATGGCTCTATCTCCCTCCAATTATATTCACCTTTTGAGTTTCTATAATCAAAGGCTATACAGTTTTTGTTATCTACAGCATCATATATAATTTTGTATTTTAAGTTTTCTTCTTCACATTTTTTAAAGCCCCAAGGTAATGTATCTATACACATTTGCTCAAAATGCAAATCAAATACTTCTTTTTTTTCTTTAGGAACAATATTTTTTACCTTTTCAATGGCCATTTCAACATTTTTATTATCTAAAAATTTATTCATATTTTTTAGAGCTTCTATAATTGAAATCATATCTTCTAATGTTAAAAGTTGATGATTGATTTTATAGTTATCTATAATATAAAATCCTCCATTATTTCCAATTTGAGAAACTATAGGAATTCCAGCAAGATTAATTGCTTCAATATCTCTATAAATTGTTCTTACAGAAACCTCAAATTTTTCAGCTAATTCTGATGCAGATATTTTTTCTCTATTTAAAAGCATTACAACAATTGCCAATAATCTATTAATTTTCATGAATCTATAAACCCCCCATAATTTGAAATGACTATTTTATTATATCAAATTAATAACTTGTAAGATTGGTTAGAGAGAAATTGTTGAGGGAATTGCATAAGAAAGTTTTAAAAGAATAAATTCTAATATGGTAATTTTTGGGTTATCCATGGGTATGAACTTGACTTAACAAATGTACTATAGTAAACTTATATCGTAAAAAAGAATAAAGACAGTTCGTAACCATCCTGTCTATAAATAAAACTAGGACGTAGCTACCGCCTTAGGTAGTTTTTTTGTTGATGGGCATTTAATGCCCTTTTTTATTTGCAAAAAATTTACAAATAGGATTTTTGTTTTAGGTGAAATTTTTAATTTATATAAAGTTTAGAAATTGTTATTTAAGGACGCAGAGGTCTTATCCAATGAATTTTTTAACTTAAATATAACAGTAACAGTATAAGGCTGTTTTTTATAAAGATTGTCCAAATATAACTTAAAAACCTTACAAGGTAGGAAACTTTAAATAGTTGTAAAATATCCTAATAAATAATAATTTATCATAACCATTATAACTGTTTAATGTTTTCAAGTCTAAGTGAGTGTAATAGATTGAAAAATCTATAGCACAAGGAGGAATGAAAATGAAAAAAATAGGACTAACAACTACAGTGCCAGTGGAAGTTATTGTTGCAGCAGGATATACACCAGTAGATTTAAATAATATGTTTATAACTTCAGAGAATTATTTAAAATATATAGACATAGCTGAAAGAGACGGTTTCCCTAAAAGCTTATGTGCTTGGATAAAGGGAATTTATGGAGCATGTCTAGAAAATAATATTAAAGAAATAGTTGGAGTTATGGAGGGGGATTGTTCTAACACTAAAGCCCTCATCGAGGTTTTTAAACTAAGAGGAATAAAAATTTATCCATTTTCATTTCCACATAGCCATAGTTTAAAGGATGTAGAAATTGAAATAAGAAAGTTCATGGATATCTTCAATGTTAACGAGGATAAGGTAGAACAGGTTAGAAAAAGATTAAATAGAGTTAGGAAGCTAGCAAAAAAAATAGATGAAATGACTTATATAGATAATAAGGTTAATGGTTTTGAAAACCACCTATATCAGGTGAGCTTAAGTGACTTTAATGGAAACATAGATGAATTTGAAGAACACCTTAAAAAAGTCATTGAGGGTATGGAGAAAAGAGAGCCAATAAATAAAAAATTAAGATTAGGCTATATAGGAGTTCCTCCAATGACTGGAGATATATATGAGTTTAGTGAAAAATTAAATGCTCATTTTGTATATAACGAAGTTCAAAGAGAATTTGCTTTTCCTAGGGGGATAGAAGCTGCAAATATATTTGAACAGTATTATAATTACACCTATCCTTATGATAATGAGTTTAGAATTAAGGAATTGAAAAAGCAAATAGAAAAGAGAAAAATAGATGCTATAATTCACTACACTCAGGCTTTTTGCCATAGAGCTGTTGAAGATATAGTATTAAAAGAAGAATTAAATATTCCTATGTTAAATATTGAAGGTGATAAGTTAAATACATTAGATGCAAGAACTAAACTAAGATTAGAAGCCTTTCTGGATATGTTGCTGGACTTAAAGCAGAAGTAATAGGTGATCTAGTAAGAATTTTTATCTTAATATATTGTTGGATTTAAAGCAAAAGTAATAGACGGTATATAAAAGAAGTTCATGTTTTCTTTATATTTAGCGAAGGAGGGGAATTAATGAGATTGTTAGGAATAGACCTTGGAAGTAGAGAAGTTAAGATTGTTTTAATGGAAAACAATATTATAGTTCAAAAGAAAAAAGTAAGTACCATGAAATTTTATAGAGATTACTGTAGCTTTCATGGCAAGATTGTAGTAGATTTAGAAAAACTTAATATAGAAGGAATAGATAAAGCGATATCAACGGGTTATGGAAAAAATAATACGGATTTAGAATTTTTTACACCTATAAATGAGATAAAAGCCCATGTTTATGGTGGGATCTATCAAAGTAATTTAAAGGATTTTATACTTTTAGATGTAGGTGGTCAGGACGTTAAGGTGGTAAAGGTAGAAAAGGGTGTTGCAACAGATTTGGAGCTTAATGAAAAATGTGCTGCTTCCTGTGGAAGATACTTGGAGAATATGGCAAATGTACTTGAAATATCCCTAGATGAAATGAGCCAGTACTCGGAAAATCCCGTGGATTTAAATTCCACCTGTGCAGTATTTTCTGAATCAGAATTAATTGGAAAAATAGCCGAAGGGGTACACATAGAAAGGTTATGTGCTGGGGTTAATTACTCTTTGTATAAAAGGCTACAACCTCTTTTAAGTAAGTTTAGGGGGAAGAAATTAGTTATAACCGGTGGTGTTGCAAATAACCATTCAATAAAAAAATATTTAAATAATGATTATGAAGAAATAGTATCCGTAAAAGATCCTCAGTTTAATGGGGCTATTGGATGTTGTTATTACGGAAGCAAATTTTTAAAATAAACTTAGGAGGAAAAAACATGTATACTTTAAAAGTAGAACATAATTTTGATAGTGCTCATTTTCTTGCAGGTTATGAAGGTAAATGTGGAAATATTCATGGACACAGATGGAAGGTTGAAATTCAGGTTCAGGCAGAATCATTAGTACAAGGTGGTCAACTTGACGGGATGATAATAGACTTTGGAGACTTAAAAAAAGATGTTAAATCTATGGTAGATTATTATGATCATGCACTTATAATAGAGAAGGGAACTATGAGGGGGCAATCATTAAGCTCATTAAAGGAGGATGGATTTCGTATAATAGAAGTTAATTTTAGACCAACAGCGGAAAATTTTGCAGCTTTTTTCTATAAAATTATGAAGGATAGAGGATATAATGTAAAAAGTACTACAGTTTATGAAACACCTAATAATAGTGCTACCTATGAAGAAAGTGGGGTAATTTAAAATGGATTTTAAGGTGGTTGAAAGGTTTGTAAGCATAAATGGAGAAGGAAGGCGTTGTGGACAACTGGCTATATTCATAAGATTCGCGGGTTGTAATTTAAACTGTAGCTATTGTGATACACTTTGGGCAAATGAAAAGGATGTACCCTATGAAGTATTAAGTTCCAAAGATATATATGAATATATTAAGTCCAAAGAGGTTAAAAATGTAACTTTAACAGGAGGAGAACCTCTTCTACAAAAGGGAATAATGGAGTTATTAAAACTTTTGTCTAAGGATAAAGAGCTTTATGTGGAAATTGAGACAAATGGCAGCATATTATTAGATGAATTTTTGAATATAGAAAATTCACCAAGTTTTACTATGGATTATAAACTTCCTTTAAGTAATATGGAAAATAAAATGGCATTAGATAACTTTAAATATTTAACTAAGAAGGATACAGTAAAATTTGTATCAGGTAGTATAGAGGATTTAGAAAAAGCTAGAGAAATAATAAATAAGTATAACTTAGTAGATAAAACTAATGTATATATAAGTCCTGTTTTTGGAAAAATTAATTTAGATACTATTGTAGAATTTATGAAAAATAATAGAATGAATGGAGTTAATTTACAACTGCAGCTTCACAAGATTATATGGGAGCCTAGTAAGAGAGGAGTATAGCATATGGCAATTGATGTTAAAGCAATTGAAGAACACATAAGGGGAATTTTGATAGCTTTAGGAGACAACCCAGAAAGAGAAGGTCTAAAGAACACACCAAAACGTGTAGCTAAAATGTATGAAGAAGTATTCAAAGGTATGTGTTATAGCAATGATGAAATTGCAGAAATGTTTAATGTAACCTTTGAAGATGATTTATGTATAAATGATAATGAAAATGACATGGTTTTTATGAAGGAAATAGAAATATTTAGTCATTGTGAACATCATTTAGCACTTATGTACAATATGAAAGTAGCCATAGCATATATACCTAAGAAAAAAATTATTGGTTTAAGCAAAATAGCACGAATAGCAGATATGGTAGGACGTAGACTACAGCTTCAAGAGAGGATTGGAAGTGATATAGCAGAAATACTTCAGAAGATAACTGACTCAGAAGATGTAGCTGTTATTATAGAAGGAGAACATGGCTGTATGACTACTAGAGGAATAAAGAAGCCAGGTACTAAAACTATAACAACTACATTAAGGGGAAAGTTTAACACAGATCCTATTGTAAGCAATAAATTAATGATGCTTTATACGAAATAAAGAAATTTTTAGTTCTAGTTAGAGTTTTATTAAAATAAATATATTAAATTCGTACAAGATTAAAAAATCTTACACATGAGTAGAACAGTTTATATAAAGAGAGTGTATTAAAGAAGCATAACTATAACAAAGATTTTTGTAGATTGTAGGATGATAATAAAATAATAAAGGGATGTGTAGTAGATGAATAAGGAAAAAGCAATAGTAGTATTTAGTGGTGGACAAGATAGTACAACCTGTTTGTTTTGGGCAAAGAAAAAATATAAAGAAGTTATAGCAGTATCCTTTGATTATAATCAAAAACATAAATTAGAGTTAGACTGTGCAAAGGATATATGTAAAAAATATAATATTGAACATCATATTTTAGATTTAAATTTGTTAAATCAATTAGCACCAAATTCACTAACTAGGCAGGATATAACTGTTGATAAAAGCGCACCTAAAGAAGGGGTGCCTAATTCCTTTGTAGATGGAAGAAATTTATTGTTTTTAAGCTTTGTCGCAGTATTTGCAAAACAAAAAGGAATAAACACTATTATAACTGGTGTGTCACAGAGTGATTTTAGTGGATATCCAGATTGTAGAGATGTATTTATAAAATCTTTAAATGTTACATTAAATTTAGCTATGGATTATGAATTTGAAATAATTACACCACTAATGTGGATCAATAAAGCAGAAACGTGGAAAATGGCTTATGATTTAGGGGTTCTTGATATCGTTAAAGAAGAAACCTTAACATGCTACAATGGAATAAAAGCAGATGGATGTGGGGAATGTCCAGCTTGTAAATTAAGAAAAAAGGGATATTGGGAGTTTGAAAAAGAGTATTTAAAATAGTAATTTTATATGTGTTGCTTGAGCAATACCTCCTTTTTATATTTCGTATTTAGTTTTTGTAAATTTTGTCGATAATTTAATATTAGAAGTATGAAATATTAGGAGGATTATACTATGATAAATATTTTTAGTAAAAAAGATAGTGAAAAGGATAATAAAAATGATACTATTGAGCAGGAAGTTATTGTTGAAGAAAAACATGAAGTTGAAACTATAGATACTATGAAATTTCTAAAAGAAATGACTATACAGATAGAGGGTATAATACAGCAGCATAATAAAGTTAATGGTGAACATGAAGTGCTTGAAAAATTAGCAAAACAGATTGAAAATCATATGGTAACAGTATCAAATTTAACTGAAAGGACTAATGAATCAACAGATAAGCTTTTTAGTCAAGGAGAAAGTCTGTTAGAGATTACAAAAGATACTGTAAATAAATCCTTAGAAGGTAAAAAGTCAATTGAGGGTATGGTTAAAGTAATTGAAAATCTTGACATAGAAACAAAGGATACATACGAGAATATTAATGCTTTGGGCGAAAAACTAAAGGAGATTGGAGAAATTGCTCAATTAATAAGTGGAATAGCCTCAAAAACAAATCTTCTTGCTCTTAATGCTGCCATAGAAGCAGCCCGTGCAGGAGAACAAGGCAAAGGCTTTGCAGTAGTTGCTGATGAAGTTAGAAAATTGGCAGAAATGACCGGTGAAAGCAGTAGTAATATAACTAATTTAATTAGTGGCATAGACTCACAAACTGAAAATGTTTTAAATAGTGTTGAAAAGAGTACATTAGTAGTTACAGAAGGAGTAAAATCCTCTAAAGGAGCACTTGAAAAAATAGAAGAAGTTCTAGATTCATTTAACAGAGTTGAAGATGACACTGATAGCCTAATAAAAACAATTAATACTCAAAAAGAAGATATAAGTAAAATTTTTAACGGAATAAATGGAGTAGATAAAATTCTTACTGAAACCAATGAGCAAATTATAAAGCATATAGATGAGGCACACAAAGTAGATGAGAAATTAGAAAAAAGTGTATATCATATAGCTCAATATGTAAAATAA

Protein sequences of DBSCAN-SWA_3

>NC_009698|1655277:1662343|1656845_1657841_+|WP_011949099.1|DBSCAN-SWA
MKKIGLTTTVPVEVIVAAGYTPVDLNNMFITSENYLKYIDIAERDGFPKSLCAWIKGIYGACLENNIKEIVGVMEGDCSNTKALIEVFKLRGIKIYPFSFPHSHSLKDVEIEIRKFMDIFNVNEDKVEQVRKRLNRVRKLAKKIDEMTYIDNKVNGFENHLYQVSLSDFNGNIDEFEEHLKKVIEGMEKREPINKKLRLGYIGVPPMTGDIYEFSEKLNAHFVYNEVQREFAFPRGIEAANIFEQYYNYTYPYDNEFRIKELKKQIEKRKIDAIIHYTQAFCHRAVEDIVLKEELNIPMLNIEGDKLNTLDARTKLRLEAFLDMLLDLKQK
>NC_009698|1655277:1662343|1659838_1660429_+|WP_004451708.1|DBSCAN-SWA
MAIDVKAIEEHIRGILIALGDNPEREGLKNTPKRVAKMYEEVFKGMCYSNDEIAEMFNVTFEDDLCINDNENDMVFMKEIEIFSHCEHHLALMYNMKVAIAYIPKKKIIGLSKIARIADMVGRRLQLQERIGSDIAEILQKITDSEDVAVIIEGEHGCMTTRGIKKPGTKTITTTLRGKFNTDPIVSNKLMMLYTK
>NC_009698|1655277:1662343|1659169_1659835_+|WP_011949101.1|DBSCAN-SWA
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYEYIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAREIINKYNLVDKTNVYISPVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV
>NC_009698|1655277:1662343|1655277_1656222_-|WP_011949098.1|DBSCAN-SWA
MKINRLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFYIIDNYKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFEQMCIDTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWREIEPLTLVFKGFSWYLFSFCKLKNDYRLFKLSRMENLTVPHEKINENRISYKEYINISESEQVPTRVVLKFSERVRYRIDDCFDKDEIKFQEDGSVIVDTYLLEDDWIYSMILSYGECVEVLEPNHIREIIKDKCKKINDIYSNMT
>NC_009698|1655277:1662343|1661386_1662343_+|WP_011986260.1|DBSCAN-SWA
MINIFSKKDSEKDNKNDTIEQEVIVEEKHEVETIDTMKFLKEMTIQIEGIIQQHNKVNGEHEVLEKLAKQIENHMVTVSNLTERTNESTDKLFSQGESLLEITKDTVNKSLEGKKSIEGMVKVIENLDIETKDTYENINALGEKLKEIGEIAQLISGIASKTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEMTGESSSNITNLISGIDSQTENVLNSVEKSTLVVTEGVKSSKGALEKIEEVLDSFNRVEDDTDSLIKTINTQKEDISKIFNGINGVDKILTETNEQIIKHIDEAHKVDEKLEKSVYHIAQYVK
>NC_009698|1655277:1662343|1658736_1659168_+|WP_011949100.1|DBSCAN-SWA
MYTLKVEHNFDSAHFLAGYEGKCGNIHGHRWKVEIQVQAESLVQGGQLDGMIIDFGDLKKDVKSMVDYYDHALIIEKGTMRGQSLSSLKEDGFRIIEVNFRPTAENFAAFFYKIMKDRGYNVKSTTVYETPNNSATYEESGVI
>NC_009698|1655277:1662343|1660612_1661272_+|WP_011949102.1|DBSCAN-SWA
MNKEKAIVVFSGGQDSTTCLFWAKKKYKEVIAVSFDYNQKHKLELDCAKDICKKYNIEHHILDLNLLNQLAPNSLTRQDITVDKSAPKEGVPNSFVDGRNLLFLSFVAVFAKQKGINTIITGVSQSDFSGYPDCRDVFIKSLNVTLNLAMDYEFEIITPLMWINKAETWKMAYDLGVLDIVKEETLTCYNGIKADGCGECPACKLRKKGYWEFEKEYLK
>NC_009698|1655277:1662343|1657957_1658719_+|WP_003358645.1|DBSCAN-SWA
MRLLGIDLGSREVKIVLMENNIIVQKKKVSTMKFYRDYCSFHGKIVVDLEKLNIEGIDKAISTGYGKNNTDLEFFTPINEIKAHVYGGIYQSNLKDFILLDVGGQDVKVVKVEKGVATDLELNEKCAASCGRYLENMANVLEISLDEMSQYSENPVDLNSTCAVFSESELIGKIAEGVHIERLCAGVNYSLYKRLQPLLSKFRGKKLVITGGVANNHSIKKYLNNDYEEIVSVKDPQFNGAIGCCYYGSKFLK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011949098.1|1655277_1656222_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	4.2e-14	31.6
WP_011949099.1|1656845_1657841_+	2-hydroxyacyl-CoA dehydratase	NA	NA	NA	NA
WP_003358645.1|1657957_1658719_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
WP_011949100.1|1658736_1659168_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	4.0e-12	32.4
WP_011949101.1|1659169_1659835_+	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.7e-38	44.1
WP_004451708.1|1659838_1660429_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	7.0e-44	52.8
WP_011949102.1|1660612_1661272_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.0e-59	51.2
WP_011986260.1|1661386_1662343_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-16	33.5

Sequences of DBSCAN-SWA_4

Nucleotide sequences of DBSCAN-SWA_4

>NC_009698|2926606:2936075|DBSCAN-SWA
TCTAGTGTTTAAAATGTCTTATTCCTGTAAATACCATAGAAATCCCTTTTTCATTACATACCTTTATAGATTCTTCATCTCTTATAGAACCGCCTGGTTGAATTATAGCTTTTATTCCCCATTTTGCAGCTTCTTCTGCTACATCTCCAAATGGGAAAAAAGCATCTGAAGCTAAAACTACGCCATCTCCAGCTCTATCTAACGCTTCCTTTGCTGCCCATATTCTATTTACTTGGCCTCCCCCAATACCTTTTGCCATACCATCTTTAACTACTACAATAGCGTTGGATTTCACATATTTAACTACTTTCATACCAAATATAAGATCTTTCATTTCTTGCTCTGTTGGAGATTTTTCTGTAACTACTTTTGTATCTTCTAATAATTTATTATCACTCTTTTGTACTAATATTCCTCCATCTACCTTTGCCATATCTTTTCCTTCTGTAGATTTTTCTTCACATTTTATAACCCTTAAATTTTTCTTGTTTTTTAAGACTTCTAAAGCATCTTCATCAAAATCTGGTGCTACAACTATTTCTAAAAATATTTTTGCAAGATTTTCTGCTGTTTCCTTATCTACTTTTCTATTAAAAGCAACTATGCCACCAAATATAGATATAGGATCACATTCATAGGCCTTAGTATAAGCTTCCTGTACAGTATCCCCTATAGCCACACCACAAGGTGTATTATGTTTTAATGCACAACAAGCCACCTCTTCAAATTCACAAACGGTTTTCCACGCTATATCCATATCCTTTATATTATTGTAGGATAATTCTTTTCCATTTAACTTTTCAAAATTTTTCATAGGATATTTTCCAACAGTAGATGTGTAATAAGCTGCTGTTTGATGAGGATTTTCTCCATATCTTAAATCCATGTTCTTTTTATAGGATAGAGTTAAATATTCTGGATATTCCTCTTCTAATAAGAAATTACTTATAGCTGCATCATAGGCTGACATTAGATTGAAAACTTTTCCTGCTAATTTTTTTCTAGTTTGTATATTAACCTGATTATTTTCTTTTATCTCATTTATGACATTTTCATAATCCTTAGTATCTGTTAGTACTACTACATCTTTAAAATTTTTAGCTGCTGCTCTTATCATAGTAGGTCCACCAATGTCTATAAACTCTACTTTTTCATCAAAACTTAAATTTTCTTCTACTTTATTAAAGAAAGGATATAAATTCACTACTACCATATCTATAGGGTTTATGCCCTTTTCTTCTATTACCTTCATATGCTCTTCATTATCTCTTATAGCTAATATGCCTCCATGAATTAAAGGATTTAATGTTTTTACTCTTCCATCTAACATTTCTGGGAAACCTGTTACCTCTTCTATATCTATTACTTTTACTCCATTTTCTTTTAAATGTTTATAAGTTCCACCTGTAGATATTATTTCTACATCTCTACTTTCTAAAAACTTTGCCAAATCTAAAATTCCTGTTTTATCAAATACACTTATTAATGCTCTTTTTATCACTTAAACTCCCCCAGTTTCAATATTTTTTATTATCTTATTTATCTGTCATAAGTAACTGCCACCAATATACCTTCTTTCAAAGAAAACATATAAGTGGCACTATTTCAATTTACAAACTACAATTTTTTATATTTCAATAAATTTAATCTACTCTAAACACATTTTTCTATTAGTTTCATTTATATTAATAGTAATTTTTTCATTATTATAAATTTAGTATGTTTTAATAAAAACTTTTCTTCCTTGTAATTTTACTTTTTCTTCACTTATAAGTTTTATAGCTTCTGGTAATGCCTCATGTTCTTTTTCTAGAACTCTTTTTTGCAATATTTCTGCTGTATCTTCTGCAAAAACTGGTACAGATTTTTGTATTATTATAGGTCCACTGTCCGTACTCTCATCTACAAAATGAACAGTGCACCCAGATACTTTTACTCCGTATTCTAATGCTTTTTGGTGCACTTTTATACCATACATTCCATCTCCGCAAAAGCTTGGTATTAATGAAGGATGTATGTTTATTATCTTATTTTCAAATTTATTTACCAAATCCCCATTTAATATAGAAAGCCATCCTGCTAAAACTATTAAATCTACGTTTCCATATAAACACTCACATATTTTATTAGACAGATTGCTTTTATATATTTTTCTATCTAGAGTTAAAGTTTTAATTCCCTTTTTTTCTGCTCTTTCTATACCATAAATATTAGATCTATCCCCTATAACCATTTCTATCTTGCAATTTTTTATATATCCCTCTTCTATTTTATCTATTATAGATTGAAGATTGCTTCCTCCCCCTGAAACAAGTACTGCAATTTTAAACATCTTATTCTCCTTTAATTTAAAGAAAATTTTTCATATATACTCTATAAATAATTAATTCCCCAATCAATTATTTTAAAGATCTAACCTATGAACTAATTTTTATTATAAATTTATTTAATGCCTTTTTTTAAATTAGTTCAACAGACTTATCTCCTTTTTTAACATATCCTATTTTATAACCCTTTTCTCCCATTTCTATCAGGTCTTTTATTATATTTTCCCCATCTTTTTCATTTACACATAATACAAAACCAATCCCCATATTAAAAGTATTGTACATATGATCTTCTTCTATCCCTAAACTTATTAGATGGCTAAATATATTTGGTAATGGATAAGATTTTTTATTTATAACTGCTGTAAAATCCTCTTTAAACATTCTAGGAATATTTTCATAAAAACCTCCTCCAGTTACATGAGCCATACCTTTTATATTATATTTTTCTAAAAGTTTCATTACAGGTTTTACATATATTTTTGTAGGAGTTAAAAGAGTATTTCCTATTTTATTTCCTTCAAAATCTTTATGCAAATCTTCTACTAATTTTCTAATAAGAGAATATCCGTTGCTATGAGGTCCTGAAGATGCTATACCTATTAATATATCCCCATCTTCTATTTTACTTCCATCTATTATTTCATCTTTTTCTGCTATACCTACAGCAAAACCAGCTATATCATATTCCCCATCTCTATAAAAGCCTGGCATTTCTGCTGTTTCTCCACCTATTAGAGCACATTCACTTTGGATACAACCATTGCTAACCCCTTCTACAAGCTGAGCTGCAACTTCTGCTTCCAATTTCCCACAAGCTATATAATCTAAGAAAAATAACGGCTTAGCACCATGACATAATATATCATTTATGCACATAGCTACGCAGTCTATTCCCACTGTATTATATTTTTTCATTCTAAAGGCTATATCTAATTTAGTTCCAACTCCGTCAGTTCCTGATACTAATACGGGATTTTTATATTTAGGAAGTTCAAACATTCCTGCAAAACTTCCTAAATTATTTAATACTCCCTTTGTAAATGTCTTTGAAGCATGTTTTTTTATAAGATCTACTGATTTATAACCTTCCTCTATATTAACCCCAGCTTCTTTATAAGATACCATGAATAACATTCCCTTCTTTACATTATTAGTTATTCTCAAAATTTAAAAAACTTAAATTCCCTATTCCAAACTATCTTTAGGCATTTCTATAGGTGCAGATATAGGATATACGCCATTAAAACATCCCAAGCAAAAACCTTTATCTTTATTAAGTGTTTCTACTAAGCCTTCCATACTTATATAAGCTAGACTATCTGCTCCTATTTTTTCTCTTATTTCTTCTACTTCTGAGTGAGCACCTATTAAATCTTTTCTATAAGGAGTATCTATTCCAAAATAGCAAGGATATTTAACCACTGGAGATGATACTCTAAAATGAACTTCCTTAGCTCCAGCTTTTCTTAATATTTGTACTAATCTTTTACTAGTAGTTCCTCTTACTATGGAATCATCTATTATTACTACTCTTTTTCCTTCTACATTTATTTTAAGTGGATTTAGTTTTACAGATACAGCTTTTTCTCTTAATTCTTGAGAAGGTGCTATAAAAGTTCTTCCCACATATTTATTTTTTATAAATCCTATACCATAAGGTATTCCTGAAGCTTCAGCATATCCTACCGCAGCTGGTATACCTGAGTCTGGGACTCCTATAACTATATCTGCCTCTACTGGGTATTCTTCATAAAGTTTTCTTCCCGCTCTAATCCTTGATTCATAAACATTTATACCATCCATAGTACTATCTGGTCTTGCAAAATATATATATTCAAAAGCACAGGTATGACATCTTGTTTTTTCTGTAAACTTAATTGAATTTATTCCACTTTCGTCTATAATAACTATTTCTCCAGGCTCTATATCCCTTATAAACTCTCCACCTACGCAATCAAAAGCACAACTTTCCGAGCTTAATAAATAATCATCCCCAATTTTTCCTAGGCACATAGGCCTTATACCATGAGGATCACGTGCTCCTATTAACTTATCTTCTGTAAGTATAACGATAGCATAGGAACCTTTAATTGCTTGTATTGCATCTACTACTGCTTTATCTATACCTTTTTTAGCGCTTCTTGCTATTAAGTTTAATAATACCTCTGTGTCTATAGAAGTTTGAAAAATACATCCGCCATCTTCTAAAAGTTCTCTTATAACTGCTGCATTAACTAAATTACCATTATGAGCTATAGCAATAGAACCTAACTTATAAGTACCTACTATAGGTTGTGCATTATCTGATTTACTCGCTCCTGTAGTTGAATATCTAACATGTCCTATAGCAGAATTTCCTATTAATCCTTCTATAGTTTCTTTGCTAAAAACATCCGATACAAGACCCATACCCTTATGATATTTAAATTTTTCTCCATCAGATACTACTATTCCTGCACTTTCTTGTCCCCTATGTTGAAGAGCATATAATCCGTAATAAGTTATTTCTGCTGACTTTGATTCATTATCTTTAGAAAATACTCCAAATACCCCACATTCTTCTTTAAACTTATCTCCTTCTAAATCAAAGGGCATATTTTCATTTAAATCATCTAACATATAGCACATACTCATTTTTACTCCCCACTTATTTTCTATTTTAAAAATTTAATCTTCTCTTAGATTATTTCCAGCTGCTGTAAAAATAATTTTAAACTATAACAATCTATTTATTGACTCTTTTTAATATTTCCATATAAGCTTCTTTTACATTTCCCATGTCTCTTCTAAATCTATCTTTATCTAACTTTTCTCCTGTGCTTTTATCCCATAATCTACAAGTATCTGGGGATATTTCATCTGCTAAAAGGAGCTCACCATTAAATCTTCCTATTTCTATTTTAAAATCAACTAGATTTATTCCTTGCTCATCAAAGAATTCTTTTAATGTATTATTTACTTTTTCTGCTATAGAATACATTTCTTTTAGTTCTTCAAAGGTTGTAAGTCCTATAGCCACTGCATGATAGTCATTTATAAGAGGGTCATTTAAATCATCATTTTTATAACTTATTTCAAATACAGTAGTATCTAATTTTCTTCCTTCTGAAAGACCTAATCTTTTTGCCATACTTCCTGCTGCTATATTTCTAACTATAACTTCTAGTGGAACTATTTCTACTTTTTTGCAAAGCTGTTCTCTTTCATTTATCTTTTCTATAAAATGTGTTTTTACGCCCTTTTTTTCTAAAAGTTCAAATAACATTGCCGTTATAGAGTTATTCATAACTCCCTTATCTTCAATAGTTCCTTTCTTTTCCCCATTAAAAGCTGTGGCATCATCCTTATAATACACAACAACTGTATCCTTATCATCCGTTCTGAATATTTTTTTAGCCTTTCCTTCATATAACATATCCTTCTTTTCCATTATAACTCCACTCCCTCTTTGTTATCATTTATAAATTTTTCTTTCATATCTTTTCTATATTCTATAAGTTTTTCTTTTAACTTTTCATACTTTAAAGATAATATTTGTACCGCAAGCATTCCTGCGTTATAACTATTATTTATACCCACTGTAGCTACAGGTATAGATTTAGGCATTTGAACTATAGATAAAAGTGAATCCATTCCTCCAACTGCGGCTTCTATAGGCACTCCTATAACCGGAAGAACCGTATGAGAAGCTATAACCCCAGGTAAATGTGCTGCAAGACCTGCCCCAGCAATTATACATTCATAACCTTCCTTTTCTAAATCTTCAATTGTTTCCATCAACTTTTCTGGTACTCTGTGCGCTGAAAGTATGTAAGCTTTATATTCTATACTAAACTCTTTTAAAGCTTTAGCCGCTCCCTTCATTTTATCAGTATCAGATTTACTTCCAAAAATAATAGCTACTTTCATGTACTAGACCTCCTTATATTTAAATATATAAAAAATTCCGCTAAGATTTCTATGGAGAATCCTAAAGCGGAACTTAAGCGCACTGCAAAAGCATAGCTAAGATTCATCCATAGACAGGGAATTTATGGTTCCCTCGTAGAGACTCTCAAACCTTATTATTGAGATTATATGGATGATATATTCATTTGTTTTATGTACTCATGGTAACATATAATTCTTAATAAATCAACATACTTTTATAAAAACATTCGTATTTTATTGGTATTTTATTTATTTTTTTATAATATTATTCGTAATGTAACGAACAATTAGTTAGGTGAAAAATTCACTGAAATATATATTATATTGTAATAGAAATAATTTATAATAGAAATTTATTTCTGAAAATAAAATAGATTTAATTTTCAGATATCAAGCAAAATAATATATGGTAATAAACATATGAATAAGCTTTAACATTTTCTAATCTTTTTAAATCGAGAGCTTTTGTTATTAATCAAAGAATGAAGGTAAAAAACCGATGGCCAAGCCACACATAGCTTTTCCACCGGGTAAAAAATTTTTAATGAAAAAATTTGAGATTCCTAGTCAAGTAAGTTATCTATCTATACATGTATTTTTTATATTTGCATGGTTAAAATTAAATCTATTTTAAAATATTACTATCTAAGATAATTATTTTTTTCTTCTATAAGCAGTATCCTCAAGTGGAAGCTTTTTTCTAAAGTTTCCATCAAATTTATAGTAAGCACCTTGAGCTGCTGGGGCTGTTGGTATGGTTGTAATTTCTCCTATTCCTTTTGCACCATAAGCTAAATCATTAGTATTCTTTTCAATTATTGTTGTTTCAATTTCTGGTATATCAGTAGCTCTAAACAAACCTAATGTGCCAAACTTAGCAGTTGGGATAGATTTATTTAATGGATAATCTTCTGTAAATGCATACCCAAGTCCCATAACTATTCCACCTTCAATTTGTCCTTCTACATTAGTTAAATTTATAGCTTTTCCCACATCATGTGCTGCAACTACTCTTTCTACTTTTCCATCATCATCAAGAATAACAACTTGTGTTGCATAGCCATAAGCCACGTGACTTACTGGATTCTTTTTATCAGAATTAATAGGATCTGTAATACTTTGATATTCCCCATAAAATTCTTCACCTTCACACTCTTCTAATGATGTAGTTAATAATTTTTCCTTAAGCTTTAATGATGCCATTCTTGTGGCTTCTCCAGTAAATACTGTTTGTCTTGATGCTGTAGTTGTCCCTGAATCTGGTGCAAATTTTGTATCTGGTAAATCTAAAATTATCTGTTCTGGTAATAAACCTATTGTTTCACATATTATTTGTGTAAGAATTGTTCCAAGACCTTGACCTATGCAAGCTGCACTAGTTCTTATATGAACCTTTCCATCTATTACTATTAAGTTACATCTTCCAATATCCGGTATTCCAACACCAACTCCTGAATTTTTCATACAACAGGCTATTCCTGCACATTTACTCTTTTTATATACATCTTTCACAGCTAATATAGTTTCTTTAATTGCAGTTCCTTTATCAGCAATTTGTCCATTAGGTAGTGCATCTCCAGGTTCTACTGCGTTTTTAAATCTTATTTCCCAAGGAGATATACCAACTTTTTCAGCTAAAAGATTTAAGTTGCACTCTGATCCAAAAACTGATTGTGTTACTCCAAATCCCCTAAAAGCTCCTCCTGGGGGATTGTTAGTATATACAGCGGTACCTTTTATTTTCACATTAGGACATTTATATGGGCCAGCTGCATGAGTACAAGCTCTTTGGAGTACAGGTCCTCCTAATGATGCATAGGCACCAGTATCTGATATAATATCTGCTTTAAAAGCAGTTAAATTTCCTTTTTCATCACATGCAGTAGTAATTGTCATTTCCATAGCATGTCTTTTAGGATGAATCTTTATACTTTCCTTACGACTTAAAGTTATTTTAACGGGCTTTTTAATAGTCCATGCAAGAAGAGCGGCATGATGTTGTACACTCATATCTTCTTTTCCACCAAAGCCTCCACCCACATATTTGCTAATAGTCCTTACTTTTTCTTTAGGAAGCCCTAAAAGCTCAGAAATCTCTCTCTGCTCATCATATATACCTTGGCTTCCTGTATAAATAATAACTCCATCCCCATCTGGCATAGCTAAAGCACTTTCAGGCTCTAAAAAAGCATGTTCAGTAAAGGGAGTAGAATAATGATTAGTAACCACATACTTAGAATTGGCTATTGCCTCATCTACATCTCCTCTATTAACTTTTTCCACTGTTAAAATATTTCCCTTAGGATGAATTTTAGGAGCATCTTCAGCTATTGCAATATTAGGATTAGAAATAGGTTCTAATTCTTCATATTCTACCTTTATTAAATTAAGTATTTCTTTTAAAGCCTTCTTGCTTTTTGCTGCCACTAAAGCCACTGCATCACCAACATACCTTGTTCCTTCTCCTACGGCTATCATTGCTGGCCAATCCTTTACAATATGTCCTATAAGCCTATTTCCTGGGACATCTTCTGCTGTAAGAATAGCTTCAACTTCTGGATGTTTTAAAGCTACACTTATATCAATGCTTTTTACTAAAGCTCTAGGATATTTTGATCTTAAAGCAGAACCATAAACCATTCCTTCTATCTTCATGTCATCTACATATTTTCCTATACCTAAAATTTTATCTTTTGCATCTATTCTTGGAATATTTTCACCTATTTTCCCTTTATATTCTTTCGCAAATGGAAGTTTACCATTTCTAAATGCCCCTGCTGCCATTTCAATGGCTTTTATTATTTTCACATATCCAGTACATCTACATACATTTCCTCTAATAGCAGTTTTAATTTCTTTCTTATTTGGATTTAGATTTTTATCTAAAAGTGCCTTTGCACTTATTATCATCCCTGGAATACAATATCCACACTGTACTGCTCCAGCTTTAGAAAAAGCCCAAGTAAAAACATCCTTTTCAAATTCTGTTAACCCCTCTACAGTCTTAACATCTTTTCCATTCACCTTTGCAGTTGTACATATACAGGCTCTAAGCGCCTTACCATTAACAAGTATCATACAGGCTCCACAGGCTCCTTCTGCACACCCATTTTTTACTGAAGTTAAATCCTCATTATCCCTCAAATATTCAAGTAAATTAATATCCTCTGAAACAGATACATTTCTTTCATTTAATATAAATTCATACAC

Protein sequences of DBSCAN-SWA_4

>NC_009698|2926606:2936075|2930120_2931569_-|WP_012047942.1|DBSCAN-SWA
MSMCYMLDDLNENMPFDLEGDKFKEECGVFGVFSKDNESKSAEITYYGLYALQHRGQESAGIVVSDGEKFKYHKGMGLVSDVFSKETIEGLIGNSAIGHVRYSTTGASKSDNAQPIVGTYKLGSIAIAHNGNLVNAAVIRELLEDGGCIFQTSIDTEVLLNLIARSAKKGIDKAVVDAIQAIKGSYAIVILTEDKLIGARDPHGIRPMCLGKIGDDYLLSSESCAFDCVGGEFIRDIEPGEIVIIDESGINSIKFTEKTRCHTCAFEYIYFARPDSTMDGINVYESRIRAGRKLYEEYPVEADIVIGVPDSGIPAAVGYAEASGIPYGIGFIKNKYVGRTFIAPSQELREKAVSVKLNPLKINVEGKRVVIIDDSIVRGTTSKRLVQILRKAGAKEVHFRVSSPVVKYPCYFGIDTPYRKDLIGAHSEVEEIREKIGADSLAYISMEGLVETLNKDKGFCLGCFNGVYPISAPIEMPKDSLE
>NC_009698|2926606:2936075|2933519_2936075_-|WP_012099417.1|DBSCAN-SWA
MYEFILNERNVSVSEDINLLEYLRDNEDLTSVKNGCAEGACGACMILVNGKALRACICTTAKVNGKDVKTVEGLTEFEKDVFTWAFSKAGAVQCGYCIPGMIISAKALLDKNLNPNKKEIKTAIRGNVCRCTGYVKIIKAIEMAAGAFRNGKLPFAKEYKGKIGENIPRIDAKDKILGIGKYVDDMKIEGMVYGSALRSKYPRALVKSIDISVALKHPEVEAILTAEDVPGNRLIGHIVKDWPAMIAVGEGTRYVGDAVALVAAKSKKALKEILNLIKVEYEELEPISNPNIAIAEDAPKIHPKGNILTVEKVNRGDVDEAIANSKYVVTNHYSTPFTEHAFLEPESALAMPDGDGVIIYTGSQGIYDEQREISELLGLPKEKVRTISKYVGGGFGGKEDMSVQHHAALLAWTIKKPVKITLSRKESIKIHPKRHAMEMTITTACDEKGNLTAFKADIISDTGAYASLGGPVLQRACTHAAGPYKCPNVKIKGTAVYTNNPPGGAFRGFGVTQSVFGSECNLNLLAEKVGISPWEIRFKNAVEPGDALPNGQIADKGTAIKETILAVKDVYKKSKCAGIACCMKNSGVGVGIPDIGRCNLIVIDGKVHIRTSAACIGQGLGTILTQIICETIGLLPEQIILDLPDTKFAPDSGTTTASRQTVFTGEATRMASLKLKEKLLTTSLEECEGEEFYGEYQSITDPINSDKKNPVSHVAYGYATQVVILDDDGKVERVVAAHDVGKAINLTNVEGQIEGGIVMGLGYAFTEDYPLNKSIPTAKFGTLGLFRATDIPEIETTIIEKNTNDLAYGAKGIGEITTIPTAPAAQGAYYKFDGNFRKKLPLEDTAYRRKK
>NC_009698|2926606:2936075|2926606_2928106_-|WP_003385254.1|DBSCAN-SWA
MIKRALISVFDKTGILDLAKFLESRDVEIISTGGTYKHLKENGVKVIDIEEVTGFPEMLDGRVKTLNPLIHGGILAIRDNEEHMKVIEEKGINPIDMVVVNLYPFFNKVEENLSFDEKVEFIDIGGPTMIRAAAKNFKDVVVLTDTKDYENVINEIKENNQVNIQTRKKLAGKVFNLMSAYDAAISNFLLEEEYPEYLTLSYKKNMDLRYGENPHQTAAYYTSTVGKYPMKNFEKLNGKELSYNNIKDMDIAWKTVCEFEEVACCALKHNTPCGVAIGDTVQEAYTKAYECDPISIFGGIVAFNRKVDKETAENLAKIFLEIVVAPDFDEDALEVLKNKKNLRVIKCEEKSTEGKDMAKVDGGILVQKSDNKLLEDTKVVTEKSPTEQEMKDLIFGMKVVKYVKSNAIVVVKDGMAKGIGGGQVNRIWAAKEALDRAGDGVVLASDAFFPFGDVAEEAAKWGIKAIIQPGGSIRDEESIKVCNEKGISMVFTGIRHFKH
>NC_009698|2926606:2936075|2929064_2930060_-|WP_012099415.1|DBSCAN-SWA
MVSYKEAGVNIEEGYKSVDLIKKHASKTFTKGVLNNLGSFAGMFELPKYKNPVLVSGTDGVGTKLDIAFRMKKYNTVGIDCVAMCINDILCHGAKPLFFLDYIACGKLEAEVAAQLVEGVSNGCIQSECALIGGETAEMPGFYRDGEYDIAGFAVGIAEKDEIIDGSKIEDGDILIGIASSGPHSNGYSLIRKLVEDLHKDFEGNKIGNTLLTPTKIYVKPVMKLLEKYNIKGMAHVTGGGFYENIPRMFKEDFTAVINKKSYPLPNIFSHLISLGIEEDHMYNTFNMGIGFVLCVNEKDGENIIKDLIEMGEKGYKIGYVKKGDKSVELI
>NC_009698|2926606:2936075|2931660_2932365_-|WP_012047943.1|DBSCAN-SWA
MEKKDMLYEGKAKKIFRTDDKDTVVVYYKDDATAFNGEKKGTIEDKGVMNNSITAMLFELLEKKGVKTHFIEKINEREQLCKKVEIVPLEVIVRNIAAGSMAKRLGLSEGRKLDTTVFEISYKNDDLNDPLINDYHAVAIGLTTFEELKEMYSIAEKVNNTLKEFFDEQGINLVDFKIEIGRFNGELLLADEISPDTCRLWDKSTGEKLDKDRFRRDMGNVKEAYMEILKRVNK
>NC_009698|2926606:2936075|2928319_2928937_-|WP_012047940.1|DBSCAN-SWA
MFKIAVLVSGGGSNLQSIIDKIEEGYIKNCKIEMVIGDRSNIYGIERAEKKGIKTLTLDRKIYKSNLSNKICECLYGNVDLIVLAGWLSILNGDLVNKFENKIINIHPSLIPSFCGDGMYGIKVHQKALEYGVKVSGCTVHFVDESTDSGPIIIQKSVPVFAEDTAEILQKRVLEKEHEALPEAIKLISEEKVKLQGRKVFIKTY
>NC_009698|2926606:2936075|2932364_2932844_-|WP_003357851.1|DBSCAN-SWA
MKVAIIFGSKSDTDKMKGAAKALKEFSIEYKAYILSAHRVPEKLMETIEDLEKEGYECIIAGAGLAAHLPGVIASHTVLPVIGVPIEAAVGGMDSLLSIVQMPKSIPVATVGINNSYNAGMLAVQILSLKYEKLKEKLIEYRKDMKEKFINDNKEGVEL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003385254.1|2926606_2928106_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.9e-69	46.9
WP_012047940.1|2928319_2928937_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-25	40.6
WP_012099415.1|2929064_2930060_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	9.9e-67	43.7
WP_012047942.1|2930120_2931569_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.5e-58	35.1
WP_012047943.1|2931660_2932365_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	6.0e-42	42.1
WP_003357851.1|2932364_2932844_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-26	48.7
WP_012099417.1|2933519_2936075_-	selenium-dependent xanthine dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	1.3e-09	32.4

Sequences of DBSCAN-SWA_5

Nucleotide sequences of DBSCAN-SWA_5

>NC_009698|3084525:3103405|DBSCAN-SWA
GCTAATAATTAATTTTAATATTTCCACTAAATTTACATTCTACTTGCAATAATGTGTTACTAGCATAAATTACTTCATATAAGTCTTCTTTAACCTGTTTCCATCTTCCAACACCATCATATTGCAAATCTAGTTTATCTATCTCTTCAATATCTGTTATGCTGTCCATGCTAAACAAATAAGCAAATCTTATCTTTTTAGTAGTAATTAATTCATTCCAGAATACATCATTAATAGCATTAAAAGTAGCAATATTCATCCCACTTTTCCTTACGTCATCTACAGTTAAATTAACATTTACCCATTTTTCTCCACTAAATGTTTTCCATGTGTTACCGCTATCCACACTACAAACTATTCTTATATTGTTACCATTAGCAGTTAATCTAAAATAATCTATATGATCTACATTACTTAAATTCATATCACCTTTTGGAATAAGTAAACGATCAAATGGGATAGCCTTTGTCTTTAATTTTTGAATAACTCCATCTTCAAATGTTTCAAAACCTTCTATTTTTTTAAATAGCGTTTTATCCACATTAACACTATATTCTGTAAAGCTTTCTGTATCTTGAACAACTTCAAAATCACTTATATGATTTGTTTCTAAATGTGCTTTACCATCAAAGGTCATCATTCTATCGTCAATAAAATCATTACTCTCATCATTAGTAAATTCGTTTTTAACTGATATTAAATCCTGTGTATTTTCTGTATCATACCTCAAAACATTCACACGAGGCACTTTAAAATCTACTGTGTTAACAGGGATGTTAACGATTCTAGGCGTTTCAGCACTTCCCACTATACCCATTTTGGATATTTGTTTCATCCCTGCGCCAACTATTTCTCCTGCATCTATACCATCAATAGTTGTAAACTTTCCTGTTTCCTCTGAATAAGCTACTAATTGTTTATTTTTCTTATTAGTAACATCTACATCCTCAAGCTCCTCAAATTTTGTAATTCTTTTATCTATTATTTCCTTTTGTATTTTCTCACTTGACCATCCAGTTTTATTAGAAATTACACTATCATCTAAAATTATATCCTTGTCCAAAGTTACATTAAAAAATTCACTCATTAAGCCACCTCCTATTCACTAATAACTAAGTGAAAGTCTCTAACTGCAAAATTATGATTTTCTGCATTTTTAGTTATTTTTACATATATACCTTTACTTTCACGCTGTTTTATACTATCTATAGTTAAAGAGTCTGCATAATTTATACCATCGAAGGATAATTGTATTAAATCATTACTAGGTGTTTCAGTTCCTATTTTAATATTGTTATAATCCTTATCTCCTATATTTTTAATTGTTATTAGCTCTTCTAAATCTTGGAGCATAGCAGGACTAACATTAGTTACTACATTTCCATGATATATAATTTCAAAATTATATGGACTAAATACCCACATATCACCATATTGTAACTGAAGAGCATCACTAGTATATATCACTTTTCCATCCCTATCTTTAAATGTAAAATATCCACTTATTTTGCTATCTATAAATACTTTACATTCCATATCTGAATTAAATAATCTAGTTTTAATTAAATTATTATCTAAATCATATAATTCACATAAAGTATTTTCTGGGAAATTCTGAATAGTTACATAGGGATTAGCGTAAACCTTGTAATTATTTAATATAAAATCTTCATCACTATACTTCATAAAACCTTGCTTTGTAAGTGGCTCTGCAAATTCCATTCCGCCCATGTTTGTATAATTTTTGCCATCATTACTTGAATAAGCTTGTATATAATTATCTTTCTTAAGTATTTTCCAATATCTATTTTGTTCATTTGATTTTAAATCCTTAATACCAAAAATATGATCGCTATTCCCTAAATAAAGCATGGAATAATCCATATCTTTTATATCATTGAAATTTTCTTTTTCAACCTCAATAACAAATTCTTTATAATTAAATTTTCTTTCTATTTTATTATTACTTATTAGTTTTAATTTACCTGTTTTAATATCTCTAGTTATATTGCTTTCTCCCGCAAAATCAGCAAAAGAAGAAGCCAAGAAAAAATTCTCAGCTTCTAATAATCCATTTTTAACTTGTATAAGTTTCATTGAGATCACCTCTAAACTCTAGGCTGCATTATATAATCATATGGTACAAACTCAACTATTTGTATATCTTTAGTTCCTATACCATTTGCTAATAATGTATGTGCTTCCTCTAGTGCATCTTCATAACAATTAGTAGCGTAAGATGTTATTTCACTTCCATTTTTATCTGTTTCATGGCCGTATGGTAATTGGGCTAAGGTTTTATTTTTTAATATTCCCCACATCTTTTGTCTAGTTTTTTTAAAATCTATTGTACTTGTTAACATACTATCTACCTCCCAAATATATTTTTCTTTTCAAAGTTCTGTGTTTCTATCATGTAATTTCTCTTACCTTTTAGTTTATCTAAATCTTTCATAATATCACCATTAGTTGCTACTTTATTAAATTTCCTTTCAATATCCATAGCTTTCGGATTATGCCAAATTGGTACTAAATTAAAATGATGTTGTTTTAGATAATCTATTAAATTAGCTATAAGTAATCCTATAGCTTGTAATCCATTTTCAGTATTAAGGAAGTATACCTTTTCAGCCTCCCACCTGATCCATCTATATGCTCTAATATAATCTGCATTTGGACTTGATGTATCTAACGTATACCAATCATAAATTAATTCCATTATAAATTGGATAGATTCTTTACCTGTGCAATTTAACCAAGCTTGCGTATTTTTATGCCATATCATTATTAAGATATTTATTAAATCTAACATTATTTCAATACTAATTGTCATAGGTGGAATGTTATAATCCACTCCCCAATCTTTCCCCCATTCAATAGGATGATTATTAAATCTTAGATATTCATAATCTAAATTATTTAATAGATCATTATTATATATATAATCTTTATTAGGAACAATTAGCCTATCCGTTGGATTTGTAGGTTTTAACCACCACCATCTTTTGGTCATTTCAATAAACTTATTTTTATTAGGTGTATATATTTGTCTTATAGCTCCATTATTTAAATATTTATTACTTTGTCTATAAATTTGCCATATACTTAAATTTAATAAATCTCTTTCTATCTGCTTATAGATATTAATTATAGGGCTATTATCTAAATATTTTTCGTTATGTTTAAATATATTAGTTGTATATTCCCTATCTAAATATCTATTATTATATTTAAATATAGATCTTATAGCTTGCCTATATAAATACCCATTGATACTTTTATCTATAAATTTAAATACATCTTTATAAAAATATTTTTTATTATGGTCTTTGCATATTTCTTTATGTGCTATTTTATTTAATGCATTTTTAATTCTATATTTTTCTATATCCTTTAGAGCTATATTATACATTAACATAGTTTTATAATTTCTATCTATATCTTTTAAATCTAATATTTTTAAATTATTTATACTTGTATCTATATCTATTCCAATTATAATATCTTTGTTTAACATTGTTTTATTACTTATTTTAGCCACTTCTTTTAAATTGGATCTATCTATAAATCTATATTTATTTTTATTTATATTTTTAAATCCATGTTTCTCAGCAAACTTCAATTTATCTATATCTATTTCCTTGCAATAGATTCTATAAAGATAATATCCAATATTCTTTTCTATATTTATATACTTCTCTAGTTTTAAATTTTGTAAAGATTCACCTTTAAATATTTCTTTTTCTACTATTAGATCTGTATATATACTTTTGAATTTATTCAGTTGTAGATTTTCTCTATCTATAGATAAATTTATTAAATTATTAGCTTTATTTAGTTGTAGAATTTCTCTTACCAATAACTTATTGTTATAACATATAGATATATCTGTATTTTTTCTTACATCAAGTTCCTTACTTGTTATTCTATTTATACTTATATATTTTATTTTATCTAAAGATATAGTATTGTTTTTATTTACTTCTTTATTTCTTAATTCTAACTCTTTTTCAAATTCTTTTTTTATATCAGTAATTTTCTTGGATATATATTTATTCTTTTCTTTCTCTATATTATCTTTAGGTTCTTTATAAAATAATTTATCTCCTTTAATTTTATCTATTTCACCCATTGTTTCTTTGTAAAATAATTTTTCTGTAGTCTTTACTACTTTTTCTGTAGTATCGTATATAAAAGTTCCACTAGAAAAAGCATTGTCCCCTACATATTCAAAACTACATAGGGGTATTTTATGTAGGGGCATTTATACCACCTCTCTTATTTAGTTGTTTTATAACATCTAATAGCAACACAATAATTTATATTAGCACTATTGTTTAAGAAACAATATGGCGCAGTAATTTTAAATTTCTTATAATATTCTTCCTCTTCTGTATCTTTCTTATATGCTAATCTATCTGTATCGTTTATTGCACTGGCATCACCTACAAGTACATTAATCATTTTACCTCTTTCCATATCAACTGGATGTACAAGTGTTATATCTGAGAATTGATGTTTTTTATGATTATATCTACTACCTTCTACATTACATTTATCCATAAAAGGATTAGTAGCATAAAAAGCTGGATAATGTGGTTGATATGGCATACCTATTTTATTAGCTATCATACAAACATCTGTTACTCCTGTTGCAGTTCTTTCTCCATAAACCTTTGAATAATTTGGTTCTATATCAGAAGATACAGTTATACCAAAATTATATTTATCATCTGTATAAGCTGAATCCTCTACTGGTTTTAAAGCTCCAATATAAGCATAAGATGTAAGATAGTTTTCATAAGGATGAACATCCGCAGATGGATCTCCACATAATACTAAGTTTATACTATCTTTAGTTACATTTATCCAATATTGAACGGGTAAAAAGTCTTTTATTTCTGGTTGTAATTTTCTATACCATGCTAATCTATAATTATATTCAGCTTGTATATTTTTAGATATACCTAGATCTGTTTTATCTGCGTTTAATTTATCTGATATTTGCAATTTTATATTGTTTATAGAATTGCTTTTAGTCATAGCACTGACATAAACATCATAATCACCACTTTTACTCCATCTATCAGAAACTCCAGCCATCATTTCTAATACTTGTGCATCTGTTCTACTAAAACTATCCCCATTGCCGTTATAATAAGTATGCAACTTATTAAAGTCAATTAATGCCTTTTTTTCTTCTTTTGTTAAGTCCGCTTCTTCTCTATCTATTTTTACATAAAACTCTTTTCCATAGGTTGTTGTTGCTTTTATAATACACTTATCATTTTGAGAACCTACTGTAAATACAGTATCTACTTTATCTGTCTTAGAGTTATCTTTTATAAGATTTATTGTACTTCCTTCTCCTGCTGACCCTATTTTATTTATGCTATCTGGATAAACTAAATCCCATTTATATATACCTGAATTTTGTGTTATTTCAGCTGCTAATGTTTTTACTAAGTTTTTTACACTTGTATTTCCTTCAACAAAATAAAAATTATCTGTAGCCATTTTATCTACCTCCTGTTATCAATTATTTATTTAAATTTGTTATTTTTAAAGTATTTAAGTCCATTATAAATATATCTTTTAAATCTCTATTTGTATCTAAATTCACATTAAATTTTTTAAGTAGTTTATTACCATAAGGTCTATATTGATATATTTCCAAAGTTACAGGTTCTTTTAGTTCTACTCCATTAAAATTCTTTATACTTATAAGAAGCTTTTTATTTTTGTACCCTTTAACACTTATTATTTCAGGATTTTTGTTTGTTTTATGACTTGTATAATCAAAATTAAGATAAAATCCATCATAGGATTTATTCCCATACCAAACTTTTTTATCATCTATCTTGCCATGTAAATCTATATCTGCATCTGTATTTTCTTCCCAATTCATTACTACTGCTATATCCCATTCATTATCTATATCCTCTATGCCTGGTGGTGGCTCTACTGTAATACTAGAATCTTCTCCATCTATATACTCTAAATCCACAATTATCTGTCTACTATTGCCGCTTAAATTATGAAAAACAAAAGAAATAGGCGTATTAGCATTTACTTTATAGAATGTATTAAAGTATTTATGCTCTCCTATTTCCTTAGTTGTTACATTATCTATTATTTTAATTTTATTAATTTCTAAGCTATATTTATCTTCCTTTTTCCAGCCTGTTTGATTAAAATGCAATCCTGTAATATATACATCTTTATCAAATTTAAATTGTTCTTTGTAATCATTTTGTATTGCTGGGATATCTAATAATATACCTTTCACCTTTTGAATGCCTTCAATTTTTCTGTATATAAAGGCATCAATTTTTTTCTTTAATCCTTCATATTGTACACTTGGCAATAAATTCTTTAATTGTTGTAGTAAATCTTGTATATTGTTGGTATTTATCTCTGGATAATTAGTTCTTATATTATCATCTATCAGACTTAATAAATGATTTTTTAAATCCTCTGTAAGCTCTTCAAAATTAATTATATACTTAGGTAGGCTCAAATTAAGCACCTTCTTTATATTCAAAGATTGAACTTGTATCATTTCTTGGATAAACTTGAGCTGTTTGTGTTATCTTTAAATAAGGATTTTTAATATTAAATTCATCATAAAAATGTAATACACTTTGATATAATTCTTCCAAAGTTACAATTCTATTTTTATCTTTATCAGATTTTTTAGTTTTAATGCTTTGTGTTAATGCCCATGTAAAAGCTCCTGAAGGATTAGGATTTCCATTATATCCAGCGCTCAAGTCACCGGATGTTTCTGACCCTGCACTAGCTGTTAAAACCTTATATCCTTGTTTATTTAATGTTTTGTCTATACTTCTAAGTTTCTCCTCCACTACAGCTAATGTATATGCAAAATTTTTATCTATAGCAAGTCCACTGTGGCAAGTATCAATAAATATTACCTTAGTGCCTTTTATATCATCCAGTATTGTTTGTAATTCATATACTGTTATTATGTTATCTTTTGCTACTAAAGCAAACTTATCTTCATATACAGTACCATGTCCAGACCAAAACAAATAACTAATATCATTATCTTGTGCATCTTGAAAAGTGTTTTTTATTAAATTTAATGCTTCTGATTTAGTTTTATTTTTTGCAACTATATTTTTTGTAAATTTAGCACTTTCTTTATGCTCTTTAAATAAATTAGATATATTGTCAGCATCATATGTGCAACCCATAAGGTTATTAGCGCCTTGTAAAGTATATTCACTTTCTCCTATAGCTAAAAATCTATAGTTTTTTTCACTAGTGGTAGGTATAGTAGGTGTAGGTAAATTACTATTTTCTAATATATTAAAATCTACCCATAAAACTTTACTAGTTCCACTAATATTATTGTAAATAAATTTGACTGTACCATTTATAGGATAAAATACATTTAAAAATTTATGTTCACCATATTCTTTAGTGCGTACACTTTCAAATAATTTATCATTACCTACTTGTAAATCCCAGCTATCTTCAAATCTCCAACTAGATTGAGAATATGTTATACCTGTTATTTGTCCATTTCCCTTAAATTCTATTATATGCTGTCCTTTTACTGCAGGAATCTCTAGCATTTTCCCATAAATTTTCTGTGTGCCTGATATACCTAAATTTCCACTTAAATTATCTAACTTTACACCTAAAGCATTTAACGCATTTATTAAATCATTATAATCTACACCTTGTATTTTATCTTTAATTTCTGATAATAAATTTTCCATATCTTTGGTAGAAAAATTTATATTGCCTATGTCAACTTTCACACCATTTTGTAAATAATCTTTAATAAGATCTGATAGTTCATCAAAGTTGACTACATAGGAAGGTAATCCCATATTATTGCCACCTCCTATACATAATCTATTGTTTCTAATTTACCATGATTATCTTTAATTAATTGTATTGTTTTATTTGTATTATTAGGGTACGTTGTTTTAATTCTATATACCTTACCTTCTGCATTTCTAATTAGTTCTTCTTGCCATTGCATATCTGTTCCACTAGCATATATAAATTTATATGCCTTATTATTACTATCTCTAATTATTCTACATGGATATTCGGGTAATTCCCCAGCATATTTTGAATCTTCATTTGTATTTATTTGATTTTTGAAATTTCTTTTTCTTAATTCTTGATTTAAAATATATACTACTGGCTCCCTAAAATTTTTATATCCCATATGTGCCATTTTAATCACCTACTATTGTTTCAATCTTCCACTGCCTATTTGGATACATTGGTCATACACTTTTGTTTTATCTCGCATACCTTGTAATTGCAATGTATCTACATATGTGTCAGCATTTATTTCTGTACTTATTCCTACAATTAAATACCAGCCATTACCTCTTTGATTATTTACTAATTTAACTACTTGTCCTAAATCAATATTAGGTATTCCAGTTACTGGTACTACATTTAAAGCAGTACTCTCCCTCCACATATCTAAAAATTTATATCCTGCTACCTTTTGTTTTAATAATGGAGTACTAGCTAATGGATTATCAATTATATCTACCCATCTTTCACCATTTAAATAACTAGTCATAGCTTTGGATTCAAAAATAGAATATTTATCATTACAACAAATCTTTAATATATTTCTCATTAAACTAGAATCTCTACTGGCAGTTTCACTAGATAAATTAGTATCAACAGATAAAACATAATCATGGTGATTTGCTTCATGATTTGATTCATTATAAGCAGGATATTGCTCTTCTAATATTATTGTACCGTTTTTGTTTGCCCTTATTCTGGCATACATAGTTTCTACCAAATTACTAATTATATCATTATACATAGTACCTATTTCACATTCTAATTTAGGCACAGTATAATTATTTCCTCCACCTCTTTGAAAACTACATTTTGCATCGGATACAACAGTAGAAATTATATCTGCTGCGGTTTTATTATAAAATTTTAATTCCTTATCACATAAATTTAACATTCTATAATACATATCATGACAAGTAATTTCTATTGTTTTATCAAGTGTATTATAATCGTATTTTTTAATTACACCTGTAAATTGAAGTACATCCTCTATATAAATTTTTATCTGTGCAAAATTATCTATTACACCTTGCGTTCCTCCTGCAAAAATAGCTGTGGGTAGATTCTCATATTGTGCTGTAACAGTAGCTTCAGCAGTAGGTGTAGTTAAAGTTCTATTTATTTTAACTGACACTAAACAATGTTCTAAGGTTATTTTATTAGCATCACCATTTTCAAAGGCTTGATAGCCATTTTTTTTATAAAATTCTACTTTACATTTTGCCATTATCTTTCACCCATCCACTAGCTTCATGATTACATAAAAGCTCTAAATTTATATAATATATATCACCTTCGATAGGAGTATCTATCTCAAACTTATTTTGTAAATATCCTTTATATTGAATTCCAAATTCATCTACAAATATGAATCTACCTGAATAACTTTTTCTAAAGTCTAAAAACTTAGTTATATTACTTTGTGTTTCCTCATCATTTTCTCCTTTTATATTAAAAGCAACTGTAAACTCAATAATACAGTCACTTTTAACACTTTTTTCAAAATATGTGTATCCTTGTACTGTTCTAATACCCTTACGAAAATAAGCAGGACGAGGTGGCTTATAATTAGTTATTACGCCACCTGTATTTTTTCTATCTTCATAAAGCAAATCTACTTTAAAATCTTTTATTCTATTTAAGTCCATATAAGCCACCCCCTAATCTCTCAATACATCATTCATAAATAATCCTGTCATAACATTTTTCATAGAACTTTCTGTCATTTGTTTAAATTCATTAGCTATCTTATTAGCCCCTTCTTTATCTGCATTTGGTATAGTTACATACATTTTTATATCCTGTGTAAGTCCCATACTTTTATTCATGTTATTAGGTCCATATGGAGATGCATAAGTACCACCATATGCTCCACTAAGTGACATATTATTTAATCCATTAAAATTTGGTCTTACATTTCCTAATCCTTTAATTTTATTAGCTATACCTTTAAATTTATTATTTATGGCGCTTTCTTGATTATCTATACCTTGTATAAGACCTTCTCCAATAAAATTACCATAATCAGCAAATACACGTGATGGAGAGTTTATTCCTAACATTTTCTTAAATCTACTAGATATTTCACTAGCTAGATTTCCTATTACCTGTCCTACTCTTCCAAACATAGCTCTTATACCATTTATAAGACCTTCAACTATATTTCTGCCTATGTTGAAAAGTGCTCCTGCTAAATTACCTAATCCTCGAAATATATTAATCCAACCTTGTACAATTCCATGTAATATAGTTCCAACACCTCGAAATATTGCTATACATCCGTTTATTATGTTGTGTACCATTCCACCTACCCATTGAAGGATTCTAATAAATCCTTGAAATGCATGAATAGCCCCCTGTATAATTGAATTTATAACTCTACCTATTCCTTTAAATATATTTGCTATGAAATTTCCAAACCGGGTAGCATATTTTTTCAAAGTATCCCAATGTTTAATCACTTCATATACTATAAGTCCTATTGCTGCAATAGCAACTAAAATTAGAAGTGTTTTTGAAGTTATTATGGTCTTTAATAATCCAAATATCCCTCCAGCTTTCTTTAATTTACCAAATATACCTATCACATTATTTATAGTACCTACTAATTTGCTAAGTACCGTAAATGTTTTAGCAACTCCAGCTATTGACACAATTATTATTGCAATAGCGTTTTTCACAGGATTAGGCAATTTATTAAATGAATTCATTAATTCTACTGCTTTATTAGCTAGCTTTGTAAATATTGGGATTAATTTATTATTCAATATAGGTACTAATTGATTATTAAATATAGGTATCAACTGTTTTACTATAGATGTTTGTAATTGTGCAAAAGAATCTTGTACTTTTTTTATGGAAGCTTGTATATCTTTTTGAATTTTATCATAATTGCCCTTTGCAATATTAGCAGGACCCTTTTTGGGGTTCTTACTCTTTGTCTCTTCAGCAAGAGTATTTTTCATCCCAGTTTTAAGAAGATTTTGTGCCGCAGCACTAGGTTTTTCCATAGATTTTCCTATTTTGCTTAAAGTTCCTGCTTCTTTGGCTAATGCTTCTTGTAATTTTTCAATTCTAGTTTTTTCTTTCTCAACTTTATGCACAAATATTTCTAAGTCTTTTCCAGCTCCATTAAGTGCTTTTTTAAATTCACTAGTATCTAATGTTAAATGGGCAACTGCCTCTCCTACATTTACTGCCATGTTGTTTCTCACCTCCCACCTTTGGGAATAAAAAGTTTTCTAACTTCATTTAAATAATAATTTAAATTTAAAAATCTATTTTCTATTATTAGCATTTAACCATTGAATCACATCTTCATTATTAGCTTTATTTATTCTATCTCCATCTATAAACTTAGGCTCTCTAGCATCTTCTTTACTAATCTCATTTAATATATAAACGCAGGCCTCATCAAAACAAAAAGCCTCATAATCATTAGTCAACCCTATAATTTCACTGGGCCTTTGTCTATATTGTTTACTTATTGATATTACACTCAGTATTCTCTGACTCTTCACGAAAGGAGTCTAATTCACTTACACCTTCCTGTGTATAATTAAACAATGCTACTATTTGTTCATCTGTAAGCTCTAATCCTACACTTTTTAAATCTTCTATGGAAGGTTCTACAAGTGCATTTTCGGCCATAATATACATAACATCTGTCATTTGTGCTAAATCAACATTCTCTTTTGAACTCTGTTTACCATAAAATAGTTCCTCTGCTGCACTTAATAATTTGTTAGGCACTACTCCTTTTCTTACCAAATTTAAAAGAGATACTCTTTTAACTCTAGCATTAAAAGGTATCCCTTGGCTAAATTGTGGCAACTGAATTACTTCATCTTGAGCTGCTTTTTTTAAATCTTCTATATTAGTTACCTTTAAATCCATTTTATTATCCCCTCACTATCTAATCTTTATTGTTTTAAATTCTGTGGATAATGCTGTGGTTTTACCACTTCCATCTAATTTGTTTATTTCTTTAGCTTCAGCAATATAAACTGTATCTATTGCTAAAGAATCAGGTACAAATGTTACTATTTTCTTAGTATCATCTATAGTTACATTTCCATTTACTCTAGAATTATCAGATTTTCTCTTTATAATAAAGTTTTCTAGGTTAACATCATCTTGATTAATTTTATTTGAAAAACTCCACACTACCCTGTTAGTTATACTTACCCCTACATCTGGATTTTTATTTTCTACTTCTCCACCTTCTACTCCTATATCTTCAATTGGAGTAGATTCTCCTGGCTTTTCTCCATTATTATTCTCTTGTAATTTATTTAAAAATTCTATTTCTACAGGTTTCTCATTTCTAAATGGTATACTTTCAGCCTCATATGAAGACACTAAGAATTTTCCATCTTGAATTTTATATTTAGCTGGCTTACCTTTACAATGCTTATACACGAATTTAACATAGCCTGTGGTTCTAGAATAGTCTTTTTCTTCTGTGAATATTTCCATAGTGAATGGATGTCTTTCTACTGCTATACCTACTTCTGTTCCACAATATTTATTATCTTGTATAGTTCCTCCATCTATTAAAGCCATAGTTTCTATATTAAATAGATTGTCCTTCATTTTTAACTTGTAACCTATAACAATATCATCTGTTTCATTTATTCCATAAATTTTATTTTTAATCCTTAATATATCTCTTTTGCCCTTACTGTTTATAGGTTCTATATCTATTTCATTGCTTGTTTCTATTGTATGTTTTGTATTTGTTACCTCATCAATAAAATTAACTTTCACAACATTAACTAAAGTTTTTCCGCTTGTCATTAAATTACCTCCTTAAACTTTTAAATTGTTGATATTCTATGCTTGTAGTGTAAGCTTGTACATCGTAATCTATAACGCTTGGTGTTTCATTCCCTGTAGGCCTAAGATCTTCTATTTTTTTTAAAGCTTCTTTTATATTCTCTACATAAAATTCTATAGTGGAATATTGATCCATAGGGCTATAGACTATAATATCAAATAGTTTATAACCAGATATATTTCCAACTAAGGCATGTACACCATTTTCCTTTATAACTACATAGCTTTCTGTACATTTGTTTCTCTTTTGTCCAGGAGCATACACATTATATCCTAATTTTTTTAAATATAAATATACATTTTGCCATAAAGTTTCTGGTATAACATTATTAATTATATCTTGCTGTATGCAATCCCCTGGAACCTTGTAATTAAATTTAGACATTTACATCACTTCCCAAATAAATTACTCATCCCCTTAAGTATTTGTGGACTCAGTTTATCTATAGTTGGTTTTAATATTGCATATTTTTTATCATTACATAACTCTAAAGACGGATAGTAATCCTCATTTCCAGTAATATAAATATTACACCTATCGCCTTTCCACTGTTTTCCACCTTTAATTGTTTCAATATCCATATCTAATTGATCCTTCCAAGGTGCATTCTTTTTAGCATCTTCTTCTAGCTTCTTTGCGGCAATATCTGCATACCCACTTATAGCAGTTTTAGATTGCATCTCAAATTCAGATAATCCATCAATAACACTATCTATATTTACTTCAAATTCCCTCATATCATCACACCCTGTTTAATATCATATCAAATACTAGGTTTTGAATATTTCCTGTGTCAACTATTTCATACTTAGTTCCATCTAATATAAAATAATCATCCTTTTGTATTTTAGAGCTTATATCATTATAGATAATTAATAATTTATCATTATATAAATTATTAAATTCCAGTCCTTCCATAGAAGTTGTAATTATATTACTATTATTTCTATAATAATATCCCCTTATAGTGCATACATACACTTCATCTAGTTTTTCTTCAAAAGCATTTTTACCTATTCTTAATATTTTTATTTCTCTTAATAAGTCTTTTTTTTCTAGATGTTCATATATATTTTTACTTATTTTTGCCCTATTTATATTATTCATTAATGTTCATCAACTCTTTCCATAGAAGTTTGATTCTTTAGAATCTTTTGCTCTTCTTTGAAATGCTCTGCTAGAGTTAACCAATAGGCTCTATTACTTTGTAACTTTATATCTGCAACTTCTATTCCATCATCTGCAATTGCTTTTAGAATACACCCTTTATAACTTGCTTTTTCTACATCATTATTATTGATTTCTAGTAGCAATTCTAGCTCTTTATCCTCAAAATAAGGATACTGTTTTTCTTGTAAATTAAATTTCAAAATCTCTAAAGGTGTTCTCACTTTTTCTCACCTTCCTTAGTTAAATTTTATTTGTTTAAGGTTACTAATTTTTCTGCAAATATTTTCAATAATAGTTTAATCATTTATTTAGTCAGTCTATTACATAACCTCAAATCATCCTCATTATGATAAATTATTGAATATAGCTCACCTCCTATGCTTACTGTACAACCTTTAAGTTTTCTTGAAATGAATAAGCATTAGATTTTATAAAAGCCTTAATTTATAACTTTATTTATAAGAAGTTATAAGAATTAAAACTTATTTTGCAAATCTAATGCATTATTTACGAATAATAAAATTTTTAGTTCAAATTATTCAGTTTTTTAGCTTACTCTTAAAAGCTGTAAATTTTAATTTGATTTCATAATATTCATTTATTTTTTAATGAATACTTTACAGTTGTTTTATATAATAAAACCTCTGCTATTTTTATAATACTATTATATTTCATTTGAATACTTTATTTATCCCAACTTTGTCTCATTTTTGTCCCAAAATATTTTTATCAGATGACTACCCGCTCTAATACTCCCATCTTTTTCAAAGTGAGAGTAAAGAGCGGGTACGTCCCTGGATAACGATTTCCCCTAAAGGATAACGACTTCTAAGGAGTAAAACTCCTAAGAATTCTGTTAATAAGCTTTAGAGGGAGTAAAAACTCCCTCTGAAGCCAAGAACTCTGTTTATACTATAAGGTTATTCAATTGTGCTACATGTTCTACTAATTCATTCTTTTTTCTATAAGCTGTACTCCTTGCTCTTCCAAACATTTCTACGGCTATCCAATCTACACTTTTATTTTCTCCATACTTCAACTCTATAAATTTTTTATTTTCTTCATTTAGTGATGAAATATTATCTTCCATTACTGATATTTCTTCTTCTATTTCTCTTATTTTATATTCTACTTTCCCTTTCTTCTTAATTTTTTCTCCTAGTTCTATCTCTAATCTTTCTATTTGTCTTATTAGCTCTTTCTCTGCATAGCCTGTTCCATTGCTAGAGGTTTGTACTATTTCATCATATGTTCTACTTCTAGACTCTTCTTCTAATGTTACATCATTATTTTTAATTTTATCCATTATAATTTCTATTCTATTAGAAAGATGCTTGGCTCTATTTTTTAGCTTATTCAATTCTTTTTTACTTCTAAAATGCCTATATAATCTTTCTTCTGTTTTTATATATAATTTTTTATCCAACATATCTAACCTCCTATAATAATTCTTTAATATATTTTCTTATAACTATAATGTTACTTTTTGATATCTTTAAAGGCCTTTAGAAATGCCTTTTGGTTTGAATTTTATATACTTTTTTACATTTCTTTATTATTTTTATTTAACTCATATATCATTATTTCTTTTCCCACAATATCTAAAAATCTTTTATTGTAAAGTAATGCTTAACCACTTCGTCCGTCCATCTATTTTTTGCAACTCTTAAAAATTCTAATTCCTCTTGATATTTGTCTAATAAATTTATACTTTCCTTTAATAATTTCTCATAATCTATGCTTTTCTTTACATACTCCTTTAATAAAATCTTTAATACTACATTTTCTTTTCTAAATGACTCTATCTCTTCAAAATATTTATTTTCTATTTCTTTAACTAATACAATTGACATCTTATGCCTCCATCATACTTAATTTTCTATTATATTACTAAAGACAATCAATATTCTTATTTCAATAATTCTTTTAATATTTCTGTTTTCTCTTTAGCTTTTTCTTCCCTTATATTTTTACCATCATTTAAAATAGGAGTACACATTTCTAAAATTCTATAGTATGTCCTCTTTTCATATCTATTTTTAAGTTCTATAAGAGATAAATTTGTTGTAATTATAAGTGGTAATCCATTCCTATATCTACTATCTAAAATATTATAGATTTTAGTTCTAGTCCATTCTGTATCCTGTTCTGTTCCCAAATCATCTATTATCAATAGATCTGCATTATCTAATCCTCTCAATATATCTTCTTCTACTTCTTTTCCAGATTTTTTATATGTGTCTTTAATTCTATTTAATAAGCTATCTGCATTTACACATATAACTGGTAACATTTTCTCTATAAGAAAGTTTGCTATACATGCCACAGTATAGGTTTTACCATTTCCCGGAGAACCATATAATAAAAGTCCTACAGATTCTTTTTTCATGTTTTCAAATTTTTTAGTATATTTATTAGCTATTTTATACATTTTGTCATTACCTTTAGTAAAATCCCAATTTTTAAATTTACTATTTCTAAATTTTTCATCTATTAAACTATTTTTAATAATCTTTTTTAATCTTAATTGCTTTTCTTTATTTATTTTTTCTTTCTCTTTTGCCATTAGAGCTTCTCTTTTGCACTTGCACATTACAGGACCTTTTATATACCTATTTAACCCTGGAATATAAGTAATCTTTTCAATAGCTTCTCCACATACAGAACATATTTCAACTCTTTCATTTTCACCAGTAATATTATAATCCAATTCCCTGCTTTTTAAGGTCTTCTCCAAAGCTTGTCCTACTTGTTTCATATACCTCGCCTTCTCTCCATTTCTTACTTATCTCGTTTCTCTTTACATCTTGTGGTAATTTATATCCTTTATTTATCCAGCTTTCGAAGATTGACATTGTATATTTAAATCCTTTTATTTTGCCCTGTTCCTGTTCTCTTTTTTTTGTAATATCTAATGCATATATTAATAAATCAGTATAATCTTCTTTAGCCATGACTTTTAATACTTGATTTAAATAAGTGGCACTTATTTGCCTATAAAAGGTATTAAAATATGCTTCATTAATTTTATCTAAATTTTTTCTAATATCACTCTTTCTATCTTCTTTTATTTCTATATCTATATCTTCTATATCTATATCTCTGCCGTTACTTAACGTTTCATGTAACATTATATTTTTTTATTGTCATTATTTTTGCAACTTTGTCTTTTAGTTTCTTCTAATAGTTCTTTTTTCTTAGCTCTATGTTTAGCTACCCTTTCCCTTGTTTGTTGTCTAACTTTCTCCATACCTTCTATATTTTGATGTTTGGACCAGTTAGCTATTTTTATTAATTTATCTTCTTGTATCTGTATCATGCCAAAATCTCTAAGTACTTTTAATGCAAACCTTAAACTATTTAATGGCCTATTAAAAATTGTACTTAACATTTCTTCTGTATATGGAACATTATCATTTAGAAAAATATATCCATTTGAATTTGTTTTACCTGCTTGAACTAAAAGTCTCATCCAAATATAATGAACAGTATCTCTTTCTGGCATAGCATCTATTAATTTTATTTTTTCGTCATCAAACATATTTGTTGTTATCTTTATCCACTTAACTTCTGCCAACATATCACCACTTTCTTTTTTATCCATAGTATACAAAATAAAATATTGCTATAATTAAATCAATCCATAATTTATATATAGTTTTTCTATACTTCTTTAATAATTATTGATTTACTATGTTTACCACCACCTCCATAGTTCTTGATCTATCAATTCATTAGGTGTAATTTTCAATATTTTGCATAGATTACAAATAACCTTTAGCCCTGGATTTTCATATTTACCTTCCTCTAATTCTGTAATATAACTTCTAGCTATTTTACTTTTGTAACTCAATTTTGAAATAGATAAGTTTCTTATTCTTCTATATTCTTTTGTTTTTATTACTGCCACTTGAGGATTCCTCCTTAGGATTTATTCCTCTCAATATTAAACTATAAATTTTTAAGTATTCCTAAAGTTGACCATTTCTTTTAAAAAAAAGTTCGTCTATGGTAGTATCAAAAAAATCTGATATAATCTTAGCCTCATTTAAAGTAAAAGACTTCTTACCATTTTCTTTAAAATTATAAGTATTTAGAGATACCCCTATTAGTCTTGCTATATCCTCTTGCTTTGCTCCTCTTAAGCATCTATAAGCTTTTAATTTTTTTGCTGTTGTCATAAAGCTCACCCCTTAATAACTATTTTTAAGTAAACTATAAGAATACTATTTATATTTTTATTATAGTCAACATTAAGAATACTTTCAACTGTATTTTATCATTTTTCTGAAAAAATATTCCTATAGTTTACATTAGTTTTAAAAAGTCAACATATGGTTTATAATATAGTATAAATAGAGGGGTGAAAAAGTTGGCAGAAATAAAAGATAGGTTAAAATGTGAAAGATTAAGAAAAGATTTAAATCAAACTGAATTGGCAAAATTTTTAAATGTATCAAAACAAACAGTTTCCAATTGGGAAAATGGTAACAGAATTCCTGATACCCTTACCTTATCTAAGTTAGCTGACTTCTTTAATTGCTCCGTAGATTATATTTTAGGAAGATCTGAAAATAGAAATGGCATAATTTCTAAAGCTAATATAGATGGAAGTAATTACGAATTTGAATTAGATAAGAGTATATTTCCAAATGGCATAACTAGAGAACAAATGATAAATTATATTAAGGAACTAGAAGATAGAAATAAAGAATTAGAAAAAGAAGCTGAGATATCTAGAAAATTAAAAGAAGCTGGCTTCGATTTCAATCCCGATAAATAA

Protein sequences of DBSCAN-SWA_5

>NC_009698|3084525:3103405|3102593_3102803_-|WP_012099500.1|DBSCAN-SWA
MTTAKKLKAYRCLRGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDELFFKRNGQL
>NC_009698|3084525:3103405|3092400_3092742_-|WP_012048051.1|DBSCAN-SWA
MAHMGYKNFREPVVYILNQELRKRNFKNQINTNEDSKYAGELPEYPCRIIRDSNNKAYKFIYASGTDMQWQEELIRNAEGKVYRIKTTYPNNTNKTIQLIKDNHGKLETIDYV
>NC_009698|3084525:3103405|3086892_3088788_-|WP_012048047.1|DBSCAN-SWA
MPLHKIPLCSFEYVGDNAFSSGTFIYDTTEKVVKTTEKLFYKETMGEIDKIKGDKLFYKEPKDNIEKEKNKYISKKITDIKKEFEKELELRNKEVNKNNTISLDKIKYISINRITSKELDVRKNTDISICYNNKLLVREILQLNKANNLINLSIDRENLQLNKFKSIYTDLIVEKEIFKGESLQNLKLEKYINIEKNIGYYLYRIYCKEIDIDKLKFAEKHGFKNINKNKYRFIDRSNLKEVAKISNKTMLNKDIIIGIDIDTSINNLKILDLKDIDRNYKTMLMYNIALKDIEKYRIKNALNKIAHKEICKDHNKKYFYKDVFKFIDKSINGYLYRQAIRSIFKYNNRYLDREYTTNIFKHNEKYLDNSPIINIYKQIERDLLNLSIWQIYRQSNKYLNNGAIRQIYTPNKNKFIEMTKRWWWLKPTNPTDRLIVPNKDYIYNNDLLNNLDYEYLRFNNHPIEWGKDWGVDYNIPPMTISIEIMLDLINILIMIWHKNTQAWLNCTGKESIQFIMELIYDWYTLDTSSPNADYIRAYRWIRWEAEKVYFLNTENGLQAIGLLIANLIDYLKQHHFNLVPIWHNPKAMDIERKFNKVATNGDIMKDLDKLKGKRNYMIETQNFEKKNIFGR
>NC_009698|3084525:3103405|3096524_3097412_-|WP_012048056.1|DBSCAN-SWA
MTSGKTLVNVVKVNFIDEVTNTKHTIETSNEIDIEPINSKGKRDILRIKNKIYGINETDDIVIGYKLKMKDNLFNIETMALIDGGTIQDNKYCGTEVGIAVERHPFTMEIFTEEKDYSRTTGYVKFVYKHCKGKPAKYKIQDGKFLVSSYEAESIPFRNEKPVEIEFLNKLQENNNGEKPGESTPIEDIGVEGGEVENKNPDVGVSITNRVVWSFSNKINQDDVNLENFIIKRKSDNSRVNGNVTIDDTKKIVTFVPDSLAIDTVYIAEAKEINKLDGSGKTTALSTEFKTIKIR
>NC_009698|3084525:3103405|3084525_3085611_-|WP_012048045.1|DBSCAN-SWA
MSEFFNVTLDKDIILDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLVAYSEETGKFTTIDGIDAGEIVGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVLRYDTENTQDLISVKNEFTNDESNDFIDDRMMTFDGKAHLETNHISDFEVVQDTESFTEYSVNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGNNIRIVCSVDSGNTWKTFSGEKWVNVNLTVDDVRKSGMNIATFNAINDVFWNELITTKKIRFAYLFSMDSITDIEEIDKLDLQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGNIKINY
>NC_009698|3084525:3103405|3092754_3093840_-|WP_003403529.1|DBSCAN-SWA
MAKCKVEFYKKNGYQAFENGDANKITLEHCLVSVKINRTLTTPTAEATVTAQYENLPTAIFAGGTQGVIDNFAQIKIYIEDVLQFTGVIKKYDYNTLDKTIEITCHDMYYRMLNLCDKELKFYNKTAADIISTVVSDAKCSFQRGGGNNYTVPKLECEIGTMYNDIISNLVETMYARIRANKNGTIILEEQYPAYNESNHEANHHDYVLSVDTNLSSETASRDSSLMRNILKICCNDKYSIFESKAMTSYLNGERWVDIIDNPLASTPLLKQKVAGYKFLDMWRESTALNVVPVTGIPNIDLGQVVKLVNNQRGNGWYLIVGISTEINADTYVDTLQLQGMRDKTKVYDQCIQIGSGRLKQ
>NC_009698|3084525:3103405|3098558_3098843_-|WP_012048060.1|DBSCAN-SWA
MRTPLEILKFNLQEKQYPYFEDKELELLLEINNNDVEKASYKGCILKAIADDGIEVADIKLQSNRAYWLTLAEHFKEEQKILKNQTSMERVDEH
>NC_009698|3084525:3103405|3093826_3094261_-|WP_012099497.1|DBSCAN-SWA
MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKSVKSDCIIEFTVAFNIKGENDEETQSNITKFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGDIYYINLELLCNHEASGWVKDNGKM
>NC_009698|3084525:3103405|3099529_3100051_-|WP_012048061.1|DBSCAN-SWA
MLDKKLYIKTEERLYRHFRSKKELNKLKNRAKHLSNRIEIIMDKIKNNDVTLEEESRSRTYDEIVQTSSNGTGYAEKELIRQIERLEIELGEKIKKKGKVEYKIREIEEEISVMEDNISSLNEENKKFIELKYGENKSVDWIAVEMFGRARSTAYRKKNELVEHVAQLNNLIV
>NC_009698|3084525:3103405|3094273_3095815_-|WP_012048053.1|DBSCAN-SWA
MAVNVGEAVAHLTLDTSEFKKALNGAGKDLEIFVHKVEKEKTRIEKLQEALAKEAGTLSKIGKSMEKPSAAAQNLLKTGMKNTLAEETKSKNPKKGPANIAKGNYDKIQKDIQASIKKVQDSFAQLQTSIVKQLIPIFNNQLVPILNNKLIPIFTKLANKAVELMNSFNKLPNPVKNAIAIIIVSIAGVAKTFTVLSKLVGTINNVIGIFGKLKKAGGIFGLLKTIITSKTLLILVAIAAIGLIVYEVIKHWDTLKKYATRFGNFIANIFKGIGRVINSIIQGAIHAFQGFIRILQWVGGMVHNIINGCIAIFRGVGTILHGIVQGWINIFRGLGNLAGALFNIGRNIVEGLINGIRAMFGRVGQVIGNLASEISSRFKKMLGINSPSRVFADYGNFIGEGLIQGIDNQESAINNKFKGIANKIKGLGNVRPNFNGLNNMSLSGAYGGTYASPYGPNNMNKSMGLTQDIKMYVTIPNADKEGANKIANEFKQMTESSMKNVMTGLFMNDVLRD
>NC_009698|3084525:3103405|3102994_3103405_+|WP_012048067.1|DBSCAN-SWA
MAEIKDRLKCERLRKDLNQTELAKFLNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKELEDRNKELEKEAEISRKLKEAGFDFNPDK
>NC_009698|3084525:3103405|3090063_3091044_-|WP_012048049.1|DBSCAN-SWA
MSLPKYIINFEELTEDLKNHLLSLIDDNIRTNYPEINTNNIQDLLQQLKNLLPSVQYEGLKKKIDAFIYRKIEGIQKVKGILLDIPAIQNDYKEQFKFDKDVYITGLHFNQTGWKKEDKYSLEINKIKIIDNVTTKEIGEHKYFNTFYKVNANTPISFVFHNLSGNSRQIIVDLEYIDGEDSSITVEPPPGIEDIDNEWDIAVVMNWEENTDADIDLHGKIDDKKVWYGNKSYDGFYLNFDYTSHKTNKNPEIISVKGYKNKKLLISIKNFNGVELKEPVTLEIYQYRPYGNKLLKKFNVNLDTNRDLKDIFIMDLNTLKITNLNK
>NC_009698|3084525:3103405|3085622_3086621_-|WP_012048046.1|DBSCAN-SWA
MKLIQVKNGLLEAENFFLASSFADFAGESNITRDIKTGKLKLISNNKIERKFNYKEFVIEVEKENFNDIKDMDYSMLYLGNSDHIFGIKDLKSNEQNRYWKILKKDNYIQAYSSNDGKNYTNMGGMEFAEPLTKQGFMKYSDEDFILNNYKVYANPYVTIQNFPENTLCELYDLDNNLIKTRLFNSDMECKVFIDSKISGYFTFKDRDGKVIYTSDALQLQYGDMWVFSPYNFEIIYHGNVVTNVSPAMLQDLEELITIKNIGDKDYNNIKIGTETPSNDLIQLSFDGINYADSLTIDSIKQRESKGIYVKITKNAENHNFAVRDFHLVISE
>NC_009698|3084525:3103405|3095890_3096058_-|WP_003393374.1|DBSCAN-SWA
MTNDYEAFCFDEACVYILNEISKEDAREPKFIDGDRINKANNEDVIQWLNANNRK
>NC_009698|3084525:3103405|3097416_3097836_-|WP_012048057.1|DBSCAN-SWA
MSKFNYKVPGDCIQQDIINNVIPETLWQNVYLYLKKLGYNVYAPGQKRNKCTESYVVIKENGVHALVGNISGYKLFDIIVYSPMDQYSTIEFYVENIKEALKKIEDLRPTGNETPSVIDYDVQAYTTSIEYQQFKSLRR
>NC_009698|3084525:3103405|3096092_3096509_-|WP_012048055.1|DBSCAN-SWA
MDLKVTNIEDLKKAAQDEVIQLPQFSQGIPFNARVKRVSLLNLVRKGVVPNKLLSAAEELFYGKQSSKENVDLAQMTDVMYIMAENALVEPSIEDLKSVGLELTDEQIVALFNYTQEGVSELDSFREESENTECNINK
>NC_009698|3084525:3103405|3097841_3098189_-|WP_012048058.1|DBSCAN-SWA
MREFEVNIDSVIDGLSEFEMQSKTAISGYADIAAKKLEEDAKKNAPWKDQLDMDIETIKGGKQWKGDRCNIYITGNEDYYPSLELCNDKKYAILKPTIDKLSPQILKGMSNLFGK
>NC_009698|3084525:3103405|3100531_3101332_-|WP_012099498.1|DBSCAN-SWA
MDYNITGENERVEICSVCGEAIEKITYIPGLNRYIKGPVMCKCKREALMAKEKEKINKEKQLRLKKIIKNSLIDEKFRNSKFKNWDFTKGNDKMYKIANKYTKKFENMKKESVGLLLYGSPGNGKTYTVACIANFLIEKMLPVICVNADSLLNRIKDTYKKSGKEVEEDILRGLDNADLLIIDDLGTEQDTEWTRTKIYNILDSRYRNGLPLIITTNLSLIELKNRYEKRTYYRILEMCTPILNDGKNIREEKAKEKTEILKELLK
>NC_009698|3084525:3103405|3098193_3098559_-|WP_012048059.1|DBSCAN-SWA
MNNINRAKISKNIYEHLEKKDLLREIKILRIGKNAFEEKLDEVYVCTIRGYYYRNNSNIITTSMEGLEFNNLYNDKLLIIYNDISSKIQKDDYFILDGTKYEIVDTGNIQNLVFDMILNRV
>NC_009698|3084525:3103405|3088802_3090041_-|WP_012048048.1|DBSCAN-SWA
MATDNFYFVEGNTSVKNLVKTLAAEITQNSGIYKWDLVYPDSINKIGSAGEGSTINLIKDNSKTDKVDTVFTVGSQNDKCIIKATTTYGKEFYVKIDREEADLTKEEKKALIDFNKLHTYYNGNGDSFSRTDAQVLEMMAGVSDRWSKSGDYDVYVSAMTKSNSINNIKLQISDKLNADKTDLGISKNIQAEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLCGDPSADVHPYENYLTSYAYIGALKPVEDSAYTDDKYNFGITVSSDIEPNYSKVYGERTATGVTDVCMIANKIGMPYQPHYPAFYATNPFMDKCNVEGSRYNHKKHQFSDITLVHPVDMERGKMINVLVGDASAINDTDRLAYKKDTEEEEYYKKFKITAPYCFLNNSANINYCVAIRCYKTTK
>NC_009698|3084525:3103405|3091045_3092386_-|WP_012099496.1|DBSCAN-SWA
MGLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLINALNALGVKLDNLSGNLGISGTQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRFEDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPINGTVKFIYNNISGTSKVLWVDFNILENSNLPTPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNISNLFKEHKESAKFTKNIVAKNKTKSEALNLIKNTFQDAQDNDISYLFWSGHGTVYEDKFALVAKDNIITVYELQTILDDIKGTKVIFIDTCHSGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAGSETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNRIVTLEELYQSVLHFYDEFNIKNPYLKITQTAQVYPRNDTSSIFEYKEGA
>NC_009698|3084525:3103405|3102319_3102532_-|WP_003384849.1|DBSCAN-SWA
MAVIKTKEYRRIRNLSISKLSYKSKIARSYITELEEGKYENPGLKVICNLCKILKITPNELIDQELWRWW
>NC_009698|3084525:3103405|3086632_3086887_-|WP_003360052.1|DBSCAN-SWA
MLTSTIDFKKTRQKMWGILKNKTLAQLPYGHETDKNGSEITSYATNCYEDALEEAHTLLANGIGTKDIQIVEFVPYDYIMQPRV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012048045.1|3084525_3085611_-	hypothetical protein	A0A0A7RU66	Clostridium_phage	1.1e-140	69.5
WP_012048046.1|3085622_3086621_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	4.0e-140	72.3
WP_003360052.1|3086632_3086887_-	hypothetical protein	A0A0A7S0T0	Clostridium_phage	1.1e-33	81.0
WP_012048047.1|3086892_3088788_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	3.3e-119	52.9
WP_012048048.1|3088802_3090041_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	1.3e-196	81.1
WP_012048049.1|3090063_3091044_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	3.2e-110	61.6
WP_012099496.1|3091045_3092386_-	caspase family protein	A0A0A7RW86	Clostridium_phage	2.1e-75	74.6
WP_012048051.1|3092400_3092742_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	7.9e-16	54.3
WP_003403529.1|3092754_3093840_-	hypothetical protein	NA	NA	NA	NA
WP_012099497.1|3093826_3094261_-	hypothetical protein	NA	NA	NA	NA
WP_012048053.1|3094273_3095815_-	membrane protein	A0A0A7RU22	Clostridium_phage	5.8e-05	42.4
WP_003393374.1|3095890_3096058_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	1.1e-15	68.5
WP_012048055.1|3096092_3096509_-	hypothetical protein	A0A0A7S0S0	Clostridium_phage	7.6e-45	70.5
WP_012048056.1|3096524_3097412_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	3.1e-120	75.3
WP_012048057.1|3097416_3097836_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	3.9e-57	71.9
WP_012048058.1|3097841_3098189_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	1.1e-33	58.9
WP_012048059.1|3098193_3098559_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	5.0e-32	56.2
WP_012048060.1|3098558_3098843_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	1.0e-24	60.2
WP_012048061.1|3099529_3100051_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	3.1e-35	49.4
WP_012099498.1|3100531_3101332_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	9.9e-33	34.8
WP_003384849.1|3102319_3102532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012099500.1|3102593_3102803_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012048067.1|3102994_3103405_+	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2