CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009656	Pseudomonas aeruginosa PA7, complete sequence	4 crisprs	csa3,DEDDh,cas3,DinG,WYL	2	8	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009656_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009656_1

405902-406015

Orphan

Consensus_repeat	Method
GGCTAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009656_1

>merge|NC_009656|1|405902-406015|CRISPRCasFinder
GGCTAAAGAACTGGAGGGCAAGGTATGAGCCAGCACCACGTATTCTGCTCTTCATCCTGTTCAACAGGCTCTCCATCCAGAAGCGTGGCTAAAGAACTGGAGGGCAAGGTATGA

>NC_009656|1|1|405902-406015|CRISPRCasFinder
GGCTAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACCACGTATTCTGCTCTTCATCCTGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCTAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009656.1\|WP_012073931.1\|412852_413605_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012073921.1\|395832_397209_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_009656.1\|WP_012073928.1\|409561_410614_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_009656.1\|WP_003148631.1\|415685_416378_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_009656.1\|WP_074197244.1\|411813_412833_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_009656.1\|WP_003154592.1\|394515_395577_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_009656.1\|WP_012073924.1\|401190_402294_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_009656.1\|WP_079262150.1\|413653_414352_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NC_009656.1\|WP_012073925.1\|403866_405021_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NC_009656.1\|WP_003154588.1\|392749_393628_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NC_009656.1\|WP_012073929.1\|410592_411099_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012073932.1\|414367_414922_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_003084297.1\|399704_401075_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NC_009656.1\|WP_003148633.1\|415186_415681_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NC_009656.1\|WP_003154590.1\|393819_394455_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009656.1\|WP_012073922.1\|397487_398240_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NC_009656.1\|WP_012073923.1\|398280_399639_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_009656.1\|WP_012073926.1\|407063_409451_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NC_009656.1\|WP_049791992.1\|411203_411815_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NC_009656.1\|WP_003153285.1\|402712_403810_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NC_009656.1\|WP_012073921.1\|395832_397209_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	4.16841e-161
NC_009656.1\|WP_012073928.1\|409561_410614_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.28609e-31
NC_009656.1\|WP_003148631.1\|415685_416378_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.90861e-79
NC_009656.1\|WP_074197244.1\|411813_412833_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	7.41624e-54
NC_009656.1\|WP_003154592.1\|394515_395577_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.82817e-161
NC_009656.1\|WP_012073924.1\|401190_402294_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_009656.1\|WP_079262150.1\|413653_414352_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	5.37307e-72
NC_009656.1\|WP_012073925.1\|403866_405021_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NC_009656.1\|WP_003154588.1\|392749_393628_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_009656.1\|WP_003084297.1\|399704_401075_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NC_009656.1\|WP_003148633.1\|415186_415681_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	7.65081e-66
NC_009656.1\|WP_003154590.1\|393819_394455_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.44549e-08
NC_009656.1\|WP_012073922.1\|397487_398240_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	7.35084e-109
NC_009656.1\|WP_012073923.1\|398280_399639_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.44687e-157
NC_009656.1\|WP_012073926.1\|407063_409451_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NC_009656.1\|WP_049791992.1\|411203_411815_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00387561
NC_009656.1\|WP_003153285.1\|402712_403810_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0

>NC_009656.1|WP_012073925.1|403866_405021_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGSQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHPGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NC_009656.1|WP_003153285.1|402712_403810_+|polyamine-ABC-transporter-substrate-binding-protein
MQHPIGKTLLVATLAAAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKEYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAVPGARPLMDKSVSDSEEVYPPQAVLDKAYVSAVLPAKVLRLQTRTWTRIKTGK
>NC_009656.1|WP_012073924.1|401190_402294_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGTVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NC_009656.1|WP_003084297.1|399704_401075_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NC_009656.1|WP_012073923.1|398280_399639_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGRNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NC_009656.1|WP_012073922.1|397487_398240_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGELLDQATLLDSIDGLLFTGSPSNVEPRHYSGAASEPGTLHDPDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEAGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACGKRAGQR
>NC_009656.1|WP_012073921.1|395832_397209_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVEKFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLSNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NC_009656.1|WP_003154592.1|394515_395577_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSVLLFLAFAPWLAQAEETLRVYNWNDYIDPQVLEAFQKDTGIRVEYHTFATAEELDRALRSGEPIDVAVPSHDTLPALLKDNLLRPLDFARLPNRSHLDRQLLSKLAAVDPDNRHAIPYLWGAVGLAINTPQAEAAYGGPLPDSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAADALHGLRPNLRYVDSERYIADLEGGRLCVAMAWVGDALRAAKAGQPVSFTVPQEGSVLFIDNLVIPASAQHPQQALRFIDYLMQPQVAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLQPVLGEIWQAFRDAAH
>NC_009656.1|WP_003154590.1|393819_394455_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLERPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGTIDARLAEEGMRVFDAYLGLYLPPFLEKRSEP
>NC_009656.1|WP_003154588.1|392749_393628_-|N-carbamoylputrescine-amidase
MSRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAIIDADGSNLGIYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NC_009656.1|WP_012073926.1|407063_409451_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGAAWYLHAKQPVRSGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLSRGELAEVLGPRLVDTDRLFRTLRIRDHAAAYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPALTYVRDELGGDYLRIFDLDWHPQGVLTPSGALGAGDWQDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRSASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLIAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLESENPVLDAFYELNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSQGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDAQLADRSVKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREAVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDNLIATRAIDSALPRLAADADSPWWDDRRTERRESRADIVKAAWAASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQPLLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWPVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NC_009656.1|WP_012073928.1|409561_410614_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEAFDALGLDPTRVYRSVYRRTPLPPPVLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGDSARLILDINYLGHASLRQQIECLMLLFLKLLALISDDEFVAEHIEFRHPAPARLGEHRRLFGRLPLFSREHDALLFPAALLRRPSRNANPDMHALLTRHAEEQSRELSENRLLNRVRYLVELRLGEGYGMRQCAAELGLGAGALQRALAAGGASFRQVREEVRRQRAGEMLRAGSAIREVAKACGFAELSPFYRAFRRWYAAPPEQYRARLAREERDYSTSGT
>NC_009656.1|WP_012073929.1|410592_411099_-|hypothetical-protein
MSLRPTLALLAALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVTDDQASKLIDRVEELQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NC_009656.1|WP_049791992.1|411203_411815_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLTAYWWFEIRYIRPFSEQTTLFSGDSLRLPAGLAGPGPIRLVHFWDPACPCNVGNQQHLGELIERFAGQGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVNATHTLAVGCYCPWAGEKD
>NC_009656.1|WP_074197244.1|411813_412833_+|alpha/beta-hydrolase
MCSRAAEYPRVSPVARPPIVPSPESPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRARHPDLRARLGSMLVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELALPQPWHLCGQSTGGAILLDYLLHGGERPELGETILMAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPRFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGEADETVDWRHGLKVLREKFDEPRILLLDEARHHLANESEGLRRRYFDFLSDALGA
>NC_009656.1|WP_012073931.1|412852_413605_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDRRALNGLRENLPDSANPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRGLSDAELTQYVSFAESSAGRSYYQAALAALKAGLAVDQSVAQ
>NC_009656.1|WP_079262150.1|413653_414352_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHSGGTLEWTMHINVDHPLLQRIVDELVDQGWSHQSVFMPERLTTRLAEECRSRACAGELTPAAIGRGDGQVIREGIRGDLTQWLEPAESAACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPGRQLDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRDESPLLLP
>NC_009656.1|WP_012073932.1|414367_414922_-|hypothetical-protein
MFPTRSLLPYLLTSALLASGASQAAMEALDNHSLSQVTGQAGINLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCAKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGRQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLHIGENSIGRLELRDITDLRGTLKVRGH
>NC_009656.1|WP_003148633.1|415186_415681_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWQAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNQVLTVDGEDVSEAFLLGAEVAVQLVRRHDIRMAVLKARSPSCGNLENYDGRFNGSRIAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NC_009656.1|WP_003148631.1|415685_416378_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLVLGFSVAVVRVTKVPLVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NC_009656_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009656_2

602355-602459

Orphan

Consensus_repeat	Method
GGCGCGGGGCAGGCAATCGAGACTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009656_2

>merge|NC_009656|2|602355-602459|CRISPRCasFinder
GGCGCGGGGCAGGCAATCGAGACTGGCGGGAGTGCCCAGGTCCAGGCGCGCCGCCGAGAACTCCGCTGCGCGCAGCCCGGCGCGGGGCAGGCAGTCGAGACTGGC

>NC_009656|2|2|602355-602459|CRISPRCasFinder
GGCGCGGGGCAGGCAATCGAGACTGGC	GGGAGTGCCCAGGTCCAGGCGCGCCGCCGAGAACTCCGCTGCGCGCAGCCC
GGCGCGGGGCAGGCAGTCGAGACTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009656.1\|WP_012074053.1\|598944_599694_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_009656.1\|WP_012074062.1\|611018_611777_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NC_009656.1\|WP_012074063.1\|611844_612165_-\|YfiM-family-lipoprotein	unknown	unknown	gnl\|CDD\|182705
NC_009656.1\|WP_012074054.1\|600286_600856_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009656.1\|WP_012074050.1\|594766_597187_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NC_009656.1\|WP_012074049.1\|593739_594597_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_009656.1\|WP_012074061.1\|609982_610957_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974
NC_009656.1\|WP_012074057.1\|604712_606890_-\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NC_009656.1\|WP_012074047.1\|592064_592685_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198314
NC_009656.1\|WP_023442668.1\|599835_600237_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|224961
NC_009656.1\|WP_012074060.1\|608875_609772_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NC_009656.1\|WP_012074058.1\|607196_607640_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009656.1\|WP_012074059.1\|607671_608187_+\|glycine-cleavage-system-protein-R	unknown	unknown	gnl\|CDD\|225337
NC_009656.1\|WP_012074064.1\|612206_612932_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_009656.1\|WP_012074051.1\|597289_598261_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NC_009656.1\|WP_003152524.1\|603970_604447_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009656.1\|WP_012074046.1\|591916_592102_+\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012074052.1\|598257_598776_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183572
NC_009656.1\|WP_041025279.1\|602956_603883_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176157
NC_009656.1\|WP_012074048.1\|592703_593654_-\|lyase	unknown	unknown	gnl\|CDD\|226708

Protein	Function_ID	Function_description	E-value
NC_009656.1\|WP_012074053.1\|598944_599694_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.85659e-37
NC_009656.1\|WP_012074062.1\|611018_611777_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	3.6045e-58
NC_009656.1\|WP_012074063.1\|611844_612165_-\|YfiM-family-lipoprotein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	2.02599e-45
NC_009656.1\|WP_012074054.1\|600286_600856_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.81641e-06
NC_009656.1\|WP_012074050.1\|594766_597187_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NC_009656.1\|WP_012074049.1\|593739_594597_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	4.98904e-27
NC_009656.1\|WP_012074061.1\|609982_610957_-\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NC_009656.1\|WP_012074057.1\|604712_606890_-\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NC_009656.1\|WP_012074047.1\|592064_592685_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	3.03506e-42
NC_009656.1\|WP_023442668.1\|599835_600237_+\|PaaI-family-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	2.0834e-25
NC_009656.1\|WP_012074060.1\|608875_609772_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	1.57998e-113
NC_009656.1\|WP_012074058.1\|607196_607640_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.29789e-15
NC_009656.1\|WP_012074059.1\|607671_608187_+\|glycine-cleavage-system-protein-R	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	3.18184e-65
NC_009656.1\|WP_012074064.1\|612206_612932_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.36893e-62
NC_009656.1\|WP_012074051.1\|597289_598261_-\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.27169e-92
NC_009656.1\|WP_003152524.1\|603970_604447_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.27582e-14
NC_009656.1\|WP_012074052.1\|598257_598776_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|183572	PRK12523, PRK12523, RNA polymerase sigma factor; Reviewed.	9.57838e-107
NC_009656.1\|WP_041025279.1\|602956_603883_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176157	cd08468, PBP2_Pa0477, The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold. LysR-type transcriptional regulator Pa0477 is related to DntR, which controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.08924e-102
NC_009656.1\|WP_012074048.1\|592703_593654_-\|lyase	gnl\|CDD\|226708	COG4257, Vgb, Streptogramin lyase [Defense mechanisms].	1.13093e-135

>NC_009656.1|WP_012074054.1|600286_600856_+|TetR/AcrR-family-transcriptional-regulator
MPKKSNAAERIVHATASLLASRGYFGTGLSDIIARAEAPKGSLYHYFPQGKPQIASAAIGFVGAEVETFLDRAGATAPHARNVLREFTATLRGWLERSAFEEACPVFSTTLSIDAELAPVHAECRRALRAWHAGIERALRADGMAEKAAGSRAWLILAALEGAVGVARAERSVDALDAIEEELRALLPA
>NC_009656.1|WP_023442668.1|599835_600237_+|PaaI-family-thioesterase
MNVPEGFQPLFRSSPLLDLLGPFFCRRDAQRQLVVALRIEEKHCNHGGSAHGGLLSTLADVGLGYAMAFSREPPQPMVTVGLRLDFCGVARVGDWLEVHTRVDKLGQRMAFASARLHSGERLVASASGVFHLP
>NC_009656.1|WP_012074053.1|598944_599694_+|glutathione-S-transferase-family-protein
MAEPLLIIGSYLSPYVRKVLVLLELKGVAYRIDPIVPFFGDEAFERLSPLRQIPVLVDGDFVLNDSSVICQYLEERYPQPSLYPADLGQRAQARWLEEYADSRLGQVIIWQLFHQQVINRGIWKREPDQAVLQRTYDEDLPSVCAYLEGRTPERGWLLGELSIADVAIACLFRNAQLARYQVDGERWPRLARLLADAFALPVFQRLARFENASAQTPVAEQRKVLGEAGAPLSATSHGREQPVRGPMSR
>NC_009656.1|WP_012074052.1|598257_598776_-|RNA-polymerase-sigma-factor
MAAGEVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREPRAFLAKVARGLLIDHFRRAALEQAYLAELALVPEAEQPSAEERYLILEDLREIDRLLGTLSLKARSAFLYNRLDGMPHAEIAERLGVSVPRVRQYLAQGLRQCYIALYGEPR
>NC_009656.1|WP_012074051.1|597289_598261_-|FecR-family-protein
MNPDERQTAVHARVLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAWEQLGGLDRHLARAANGPARNALLSGNARFKRRLRRLGGSALGLLLALGVGLGVANRYVPVRYLLADAYSATGEQRELTLPDATHVRLNSRSAIDVRFDGERRQVVLLAGEILVETAHGDPRPFVVSSADGDMRALGTRFLVRREEPGTRLTVLQSAVAARAETLSEERVIKEGQQVLILPQGLQASAAAPALAGAWAQGMLVVENARLADLVAELGRYSPALLRVDPSIADLRVTGSFPLKDTRLALQALEPSLPVRSVRHNAWWFEVVPR
>NC_009656.1|WP_012074050.1|594766_597187_-|TonB-dependent-siderophore-receptor
MPRPTFRPGLLAIAIAIALAVPAPFLHAAPAEQASVRDYRIAAGPLAGTLNRIAAQAGLVLTLDPALAEGRSAHAVQGRFDAPGALREALRGSGLELVENAGGTYSLRKVPEDTLSLQAMTVSGAEEDPLGPTSGYVAKRSMTGTKTDTPILETPRSISVATRQQMADRAVHNLDDAVRYMPGVVASSFGSDTRSDWLKVRGFKPTQFLDGLPMAVGVYNNPKLETWNLERVALLRGPASSVYGQTPPGGMLDMVSLRPQNVASHEVKAEVGNYNHKQVSFDSTGPLDDEGRFLYRLSGVVRDSNTQVDHIDDKRYNIAPSLTWNIDDDTRLTFLGQFNRDDTAATSQFLPLRGTKYDAPFGKISHHKNLGDPDWDFYDRTYYWLGYSFERRINDVWQFRQNLRYLRNDLSFQTLTPTSSIDAASADGTLQRMTTSVDEDVSQFVVDNNFQADFETGALRHTLLLGIDHNRTRTDYTSIYNFTGVPPTNVNNPIYGQPIPKPSRSSAFYDYRQKTYQTGLYLQDQIALDNWRLTLGGREDWVHAGATFYNQNDATNTSRDKKFSANAALSYIFDNGLAPYLSYAESFQPSTGADDIGSNKMFKPTEGKQWELGVKYQPVGSDSLFTAAVYDLRQENVRVTDNINGTPTTSQAGEVKVSGIELEATSNVTENLKMIGAYSYTDTEVKKGQYAGNRLQQAPRNQASLWADYTWHEGALNGFSVGAGARYVGSTYGDQANTYDGYAGSYTLYDAAVRYDLGQLNGSLKGVSVAVNANNLFNKDYLASCDGYYCYYGDQRSVVGSVSYKW
>NC_009656.1|WP_012074049.1|593739_594597_+|protein-phosphatase-2C-domain-containing-protein
MPTVEILGAECRAGGAVNDDALGCTAQAAWVIDGATSIGRSVLGVESDARWLAQAVDRHLRLLLEVEPEQSSETLLRRLLNDIQGDFRAQSGRDWHDLEDMPAACLSLLRIRGGEVELLNIGDSRILVEGADGQVRSFGESALHELDRQSLAHFCRMREEHPQWDHAELFKASRPRVRQNRQLMNKPEGYWALDISDRWLGQVQRETLPLAALRSFVLMTDGFDRLVEPFRRYTDEQLLRRLEEVGVSALLDELRQIEQGDDQALAFPRFKIHDDASALWGRIAG
>NC_009656.1|WP_012074048.1|592703_593654_-|lyase
MRCLSSPLLGLLVGLSLNGAALAGEQYYPLDKGSAPYAVAPTAQGPVWFGAAGGHALGRLDPTSGASVQVPLGEGARPRAIVSDESGNAWVLDSGLDAILRVGGERLGSERFALPAKAAPVGLEAAAFDDDGRLWFTGSRGFHGRLDPQRRVVEVWPAPQGKAASGICVTPDGEVWYAQDDALVHVDPLDGSAERLPAPEGTKALRGLGADSIGRLWASDSGGARLYRYDPSDASWQSWPLPDSQARPDSLRVDAMDRVWLHDAASGALLRFDSEQATFRVLPSDRPAPGNALLGGRPGETWSAEPATDRLRVVRD
>NC_009656.1|WP_012074047.1|592064_592685_-|glutathione-S-transferase-family-protein
MNATHTLFYAAASPFVRKVLVLLHETGQRERVVLEEAMPTPVAPIRQLNASNPAGKIPALRLPDGQVLHDSRVICDYFDQQHVGEPLIPREGSARWRRLTIASLADAILDAAVLVRYEAFVRPEEKRWDAWLDAQREKIARSLAWLESDCIAELRARFDIAAIGVACALGYLDLRQPEWDWRGHYPQLAAWFAEVSQRPSMQATRA
>NC_009656.1|WP_012074046.1|591916_592102_+|hypothetical-protein
MNGYVGLRDDRRDGERLAARIGLLFPGPSAAWLQRAERLRRQQASAGPGVRRGSPASTGAG
>NC_009656.1|WP_041025279.1|602956_603883_-|LysR-family-transcriptional-regulator
MHPLLRRLDLNLLLVFDSLYRHRNVGTAAGELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAGAVAAALRALGEGLEEWRPFVPGQSQRTFVFATTDYTAFALLPPLMDRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAAQALAEAAGLALYPAPFDIPPYVLRLYSHVQHAGRDAHAWMIGQLKGLDISRTG
>NC_009656.1|WP_003152524.1|603970_604447_+|GNAT-family-N-acetyltransferase
MTLEIRPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLSEGRPIGYAVYFYSYSTWLGRNGIYLEDLYVTPECRGVGAGRRLLRELAREAVANDCGRLEWSVLDWNQPAIDFYRSIGALPQDEWVRYRLDGEALRRMAQ
>NC_009656.1|WP_012074057.1|604712_606890_-|malate-synthase-G
MTERVQVGGLQVAKVLFDFVNNEAIPGTGVSADSFWTGAEAVINDLAPKNKALLAKRDDLQAKINGWHQARAGQAHDAAAYKAFLEEIGYLLPEAEDFQAGTQNVDDEIARMAGPQLVVPVMNARFALNASNARWGSLYDALYGTDVISEEGGAEKGKGYNKVRGDKVIAFARAFLDEAAPLESGSHVDATSYSVKNGALVVALKNGSETGLKNAGQFLAFQGDAAKPQAVLLKHNGLHFEIQIDPSSPIGQTDAAGVKDVLMEAALTTIMDCEDSVAAVDADDKVVIYRNWLGLMKGNLAEEVSKGGTTFTRTMNPDRVYTGADGSELTLHGRSLLFVRNVGHLMTNDAILDKHGNEVPEGIQDGLFTSLIAIHNLNGNTSRKNSRTGSVYIVKPKMHGPEEAAFTNELFGRVEDVLGLPRNTLKVGIMDEERRTTVNLKACIKAAKDRVVFINTGFLDRTGDEIHTSMEAGAVVRKGAMKSEKWIGAYENNNVDVGLATGLQGKAQIGKGMWAMPDLMAAMLEQKIGHPLAGANTAWVPSPTAATLHALHYHKVDVFARQAELAKRTPASVDDILTIPLAPNTNWTAEEIKNEVDNNAQGILGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQLLANWLRHGVISQEQVVESLKRMAVVVDRQNASDPSYRPMAPDFDDNVAFQAALELVVEGTKQPNGYTEPVLHRRRREFKAKNGL
>NC_009656.1|WP_012074058.1|607196_607640_+|GNAT-family-N-acetyltransferase
MPVHAASLADLADLVPLFSAYLDFYEVPAPEEQVRAFLAERLRQGDSTLFLARDAEARALGFVQLYPLFASLALRPSWLLSDLFVRPEARRQGVGEALMNQARRFAESMGACGLQLETAKTNHAGQSLYERLGYVRDEQFYTYWLQL
>NC_009656.1|WP_012074059.1|607671_608187_+|glycine-cleavage-system-protein-R
MDHLVLTVIATDHPGLVERIAQCIASHGGNWLESRMSRMAGQFAGILRVAVPAEGYDELVEGLQGLSKHGIRVLLAESGIEPVCSWKPIRLDLVGNDRPGIVRDITRLLAEHGVNLESLATEVRPAPMSSEPLFHAEALLAVPLTLPLDTLRERLEDLADDLMVELVLEAS
>NC_009656.1|WP_012074060.1|608875_609772_-|EamA-family-transporter-RarD
MATANLRRGYVLGLTAYVIWGLFPLYFKLLERIPAVEIIVQRAVWSALFGAVLLLFWKHPGWWRELRQNPRRFVVLAASGLLIASNWMTYVWAVNNGHMLEASLGYYINPLINVMLGMLLLKERLRPLQWLAVALASLGVAQQVWQLGSLPWVSLVLALTFGFYGLIRKQAPVAALPGLVVETWLLLPLALVWLLLFADGPTSEAAFWSTPEALWVVAAGPVTLVPLVCFNAAARHLPYATLGFLQYLAPTLVLLQAILLFGEHLDSSRLTAFAFIWLALAVYSLDAWRSLRRLPQPG
>NC_009656.1|WP_012074061.1|609982_610957_-|serine/threonine-protein-kinase
MSHPFDSLTPDLVLDAVESLGYLSDARVLALNSYENRVYQVGIEDDEPLIAKFYRPDRWSDAAIREEHAFSAELAECEVPVVAPLTREGESLFGFAGFRFALFPRRGGRAPEPGNLDQLYRLGQLLGRLHAVGATRPFEHREALTVDNFGHASLATLLEGDFIPRSLLPAYESVARDLLRRVDALFAEVPYQPIRLHGDCHPGNLLCRDEVYHMVDLDDCRMGPALQDLWMMLAGERHERLAQIAELVDGYNEFHDFDPRQLPLLEGLRSLRLMHYSAWLARRWDDPAFPPSFPWFGSERYWGEQVLVLREQLAALDEEPLRLF
>NC_009656.1|WP_012074062.1|611018_611777_-|TOBE-domain-containing-protein
MSALSTLAQHVTRRPQRIALLAQIAELGSITRAAKAVGISYKGAWDAIDELNNLADRPLVERSVGGKGGGGARLTAEGERLLALYRRLEALQAQVLQAAEDAEDLNLIGRLMLRTSARNQLHGRVLSIHGEGFHDRIAIELPGQQRIEALITRTSTEQLELGRGRPVLALIKAGWLEVDLEPRDDQPNQLHGTLEEILAAKAGPSEVRIGLGSGLTLCALLSGERLASLGLKKGRKVVVSVDPAQVLLGTPL
>NC_009656.1|WP_012074063.1|611844_612165_-|YfiM-family-lipoprotein
MRALLVAACLSLGGCSHFAEDDWLGQDKALHFASSAALAAAGMQAAHERGLRGGRQARFGLSFSLAFGIGKELHDSRAAGSGWSWKDLAWDVAGSAAGYSLYRAAD
>NC_009656.1|WP_012074064.1|612206_612932_-|ComF-family-protein
MSLPLQYLPRWLAPAPACLLCAARSDQPPRPLCRACATELPWSRRQCRRCALPLPLDGQLCGECLRRPPAYEQVIAPWRYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPVRLLPVPLAPRRERRRGFNQARLLADWLAGELRLRCAPHLLRRVLDTPAQQGLDAALRRRNLRHAFALAPGKEVRGLHLALVDDVLTTGATAECLARLLRRAGAARVDVYCLARTPKPG

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Crispr_ID: NC_009656_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009656_3

1204501-1204829

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTAAGAAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAAA	CRT

5 spacers

The CRISPR arrays of NC_009656_3

>merge|NC_009656|3|1204501-1204829|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTAAGAAAACGACGACGGCCAGCAACAGCGTCACCCTCGGGTTCACTGCCGTATAGGCAGCTAAGAAAAGCGGCAACATCACCACCAGCGCGGACATCAGGTTCACTGCCGTATAGGCAGCTAAGAAAATGCGTTCAGAAGTCTTCATGCCGCAGTCCTCGTTCACTGCCGTATAGGCAGCTAAGAAAACGGTGTCGCCGCAGCTTTACGCCCTGGCGTTGTTCACTGCCGTATAGGCAGCTAAGAAAATCGTGATCAATGCCCGCCATGATTTCGCCGGGTTCACTGCCGTATAGGCAGCTAAGAAAT

>NC_009656|3|1|1204501-1204769|PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAAA	CGACGACGGCCAGCAACAGCGTCACCCTCGG
GTTCACTGCCGTATAGGCAGCTAAGAAAA	GCGGCAACATCACCACCAGCGCGGACATCAG
GTTCACTGCCGTATAGGCAGCTAAGAAAA	TGCGTTCAGAAGTCTTCATGCCGCAGTCCTC
GTTCACTGCCGTATAGGCAGCTAAGAAAA	CGGTGTCGCCGCAGCTTTACGCCCTGGCGTT
GTTCACTGCCGTATAGGCAGCTAAGAAAA

>NC_009656|3|3|1204501-1204828|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	ACGACGACGGCCAGCAACAGCGTCACCCTCGG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCGGCAACATCACCACCAGCGCGGACATCAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATGCGTTCAGAAGTCTTCATGCCGCAGTCCTC
GTTCACTGCCGTATAGGCAGCTAAGAAA	ACGGTGTCGCCGCAGCTTTACGCCCTGGCGTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATCGTGATCAATGCCCGCCATGATTTCGCCGG
GTTCACTGCCGTATAGGCAGCTAAGAAA

>NC_009656|3|1|1204501-1204829|CRT
GTTCACTGCCGTATAGGCAGCTAAGAAAA	CGACGACGGCCAGCAACAGCGTCACCCTCGG
GTTCACTGCCGTATAGGCAGCTAAGAAAA	GCGGCAACATCACCACCAGCGCGGACATCAG
GTTCACTGCCGTATAGGCAGCTAAGAAAA	TGCGTTCAGAAGTCTTCATGCCGCAGTCCTC
GTTCACTGCCGTATAGGCAGCTAAGAAAA	CGGTGTCGCCGCAGCTTTACGCCCTGGCGTT
GTTCACTGCCGTATAGGCAGCTAAGAAAA	TCGTGATCAATGCCCGCCATGATTTCGCCGG
GTTCACTGCCGTATAGGCAGCTAAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009656.1\|WP_003093020.1\|1200756_1201752_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_009656.1\|WP_012074492.1\|1215390_1215900_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NC_009656.1\|WP_012074491.1\|1214440_1215394_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NC_009656.1\|WP_003148589.1\|1201763_1202654_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NC_009656.1\|WP_012074488.1\|1207090_1209433_+\|ExeM/NucH-family-extracellular-endonuclease	unknown	unknown	gnl\|CDD\|225249
NC_009656.1\|WP_003156338.1\|1198310_1198763_+\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NC_009656.1\|WP_012074481.1\|1197575_1198058_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_009656.1\|WP_003156340.1\|1198054_1198306_+\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|224888
NC_009656.1\|WP_012074482.1\|1198864_1199422_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NC_009656.1\|WP_012074494.1\|1217007_1217910_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183067
NC_009656.1\|WP_041025294.1\|1205491_1207054_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NC_009656.1\|WP_012074483.1\|1199418_1200642_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_009656.1\|WP_033997657.1\|1203914_1204229_+\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012074489.1\|1209601_1211185_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_009656.1\|WP_012074490.1\|1211992_1214347_-\|TonB-dependent-receptor-family-protein	unknown	unknown	gnl\|CDD\|227113
NC_009656.1\|WP_003156809.1\|1211409_1211871_+\|inhibitor-of-vertebrate-lysozyme-family-protein	unknown	unknown	gnl\|CDD\|370137
NC_009656.1\|WP_012074495.1\|1217929_1218907_-\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NC_009656.1\|WP_012074493.1\|1216000_1216882_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_009656.1\|WP_012074484.1\|1202647_1203151_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NC_009656.1\|WP_012074480.1\|1195918_1197310_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787

Protein	Function_ID	Function_description	E-value
NC_009656.1\|WP_012074488.1\|1207090_1209433_+\|ExeM/NucH-family-extracellular-endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	0
NC_009656.1\|WP_012074492.1\|1215390_1215900_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.08454e-97
NC_009656.1\|WP_012074491.1\|1214440_1215394_-\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	6.64015e-97
NC_009656.1\|WP_003148589.1\|1201763_1202654_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	8.92851e-162
NC_009656.1\|WP_003093020.1\|1200756_1201752_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.14368e-105
NC_009656.1\|WP_003156338.1\|1198310_1198763_+\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	6.74555e-67
NC_009656.1\|WP_012074481.1\|1197575_1198058_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.51173e-99
NC_009656.1\|WP_003156340.1\|1198054_1198306_+\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	4.31738e-28
NC_009656.1\|WP_012074482.1\|1198864_1199422_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.42072e-105
NC_009656.1\|WP_012074494.1\|1217007_1217910_+\|DMT-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	3.48793e-15
NC_009656.1\|WP_041025294.1\|1205491_1207054_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NC_009656.1\|WP_012074483.1\|1199418_1200642_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.74382e-166
NC_009656.1\|WP_012074489.1\|1209601_1211185_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_009656.1\|WP_012074490.1\|1211992_1214347_-\|TonB-dependent-receptor-family-protein	gnl\|CDD\|227113	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism].	0
NC_009656.1\|WP_003156809.1\|1211409_1211871_+\|inhibitor-of-vertebrate-lysozyme-family-protein	gnl\|CDD\|370137	pfam08816, Ivy, Inhibitor of vertebrate lysozyme (Ivy). This bacterial family is a strong inhibitor of vertebrate lysozyme.	4.0039e-51
NC_009656.1\|WP_012074495.1\|1217929_1218907_-\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.43795e-150
NC_009656.1\|WP_012074493.1\|1216000_1216882_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.10494e-29
NC_009656.1\|WP_012074484.1\|1202647_1203151_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.28666e-61
NC_009656.1\|WP_012074480.1\|1195918_1197310_+\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0

>NC_009656.1|WP_033997657.1|1203914_1204229_+|hypothetical-protein
MAKPNDTSKPPVTEPSPRFIPLLPTSQANRFPHNATLYLDTQAPPGQLFESAKARLKSAINVLALTCLLDENEEPGDTLAYINGALLKLVSDALSEIDAAHPRQ
>NC_009656.1|WP_012074484.1|1202647_1203151_+|SCP2-domain-containing-protein
MLNRQRLLLGVAGRLLPLAAKVPRGLQHLVLQRVANRLFAQPLEEGAFDLLEGRWLRLEVRDLGVGWCVTRVPGGLRLVERPRASVTIRGDWRDFLLLASRQEDPDTLFFRRRLVIEGDTELGLAVKNLLDSLDPEHLPPWLWNAVESAGRAVQEERGEVVQGAQGA
>NC_009656.1|WP_003148589.1|1201763_1202654_+|U32-family-peptidase
MKLSLGPLLFYWDKRQIFDFYAEMASQPLDVIYLGETVCAKRRALSLNDWQALARELAQATRAELVLSGLALIEAASELSSLRRLCENGELRVEANDMAAVYYLSQRGVPFVGGPALNLYNGHALAELYSWGMRRWVPPVEVSGKLLRGVLDQAARLGLDQLQTEVFAYGHLPLAYSARCFTARAENRPKDDCQFCCQQYPEGIPLLSQEGEALFTLNGIQTLSGKVSNLLADYRSLEHSGADLLRLSPRAQGMAEVIAAFDRVRKGAAPPLAVEGCNGYWHGRPGMLRAEEAGLC
>NC_009656.1|WP_003093020.1|1200756_1201752_+|U32-family-peptidase
MQLVCPAGSLPALKSALRQGADAIYVGFRDDTNARHFAGLNLDERQLQEGLRRVHEAGRQLYVAVNTYSSAQGWERWQRAVDQAADLGVDALIAADVAVLGYAAKRHPRLNLHLSVQGSATNAAALALYHERYGIRRAVLPRVLSLAQVRQVAAGSPVPVEVFAFGSLCIMAEGRCHLSSYVTGESPNLCGVCSPARAVRWSEEPEGLTSRLNEVLIDRYAAGEAAGYPTLCKGRFLVNGQRFHALEEPTSLNTLDLVPQLAEIGVAAVKIEGRQRSPAYVEQVTRVWRQALDSYASAPGAYSVQPQWQRALAGLSEGHQTTLGAYHRSWQ
>NC_009656.1|WP_012074483.1|1199418_1200642_+|molybdopterin-molybdotransferase-MoeA
MSGCGCDGGQLRPLDEALAELLARAPCPPACETLPLERALGRVLGDDLPAPMDLPPWDNSAMDGYALCSADLPRSGGSLTVGARIAAGDTRGMSLPLGQAARIFTGAPLPTGADCVVPQELCTVDGERVQLPPVSAGQHVRRRGEELRRGAPVLRAGQRLRPQELGLLASLGVATVSVRRRLRIGLLSSGDELREPGQPLLAGQIYNANRYCIGALLRGLGFEVHDEEVLADELVASRDALSLAASEWDALVTSGGVSVGEEDHLKRAIAELGEVNLWRLAIQPGKPFAFGTVAGKPWLGLPGNPAAALVTALLLARPFLLRQQGLLEVLPRPLALPAAFDWAQPRTRRQYLRARLDERGRVAIHPQQGSAMLLAASWADGLAVIERGATLAAGDRIDFLPFSALLA
>NC_009656.1|WP_012074482.1|1198864_1199422_+|molybdenum-cofactor-biosynthesis-protein-B
MSHLATSAFQPLNIAILTVSDTRTLETDTSGQTLADALLAAGHRLHQRSLKTDDIYQIRAVVSAWIADPEVQVGLITGGTGFTVRDNTPQAVKPLFERDVEGFGELFRQVSQREIGTSTIQSRALAGLSNGTLVCCLPGSPGACRTAWNEILLAQLDSRTRPCNFVPHLKTPPATAPVTGCGCRS
>NC_009656.1|WP_003156338.1|1198310_1198763_+|molybdopterin-synthase-catalytic-subunit-MoaE
MAIRVQQAAFDPGRELNALHAQNVGIGAVVGFVGYVRDFNDGREVGGMFLEHYPGMTEKALGRIADEARQRWPLLRLEILHRIGRLEPGEPIVFVGCASAHRQAAFDACNFVMDYLKTRAPFWKKEDTAEGPRWVEGRCSDQAAAQRWEE
>NC_009656.1|WP_003156340.1|1198054_1198306_+|molybdopterin-converting-factor-subunit-1
MIRVQYFARYREALGIDGEQLNWEAGLATLGALRQLLVERGGAWERTLGEQNLMCARNQELCGLDEPLQDGDEVAFFPTVTGG
>NC_009656.1|WP_012074481.1|1197575_1198058_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MLTHLDSQGRANMVDVTEKAVTSREATAEAVVRMRPETLQLIQDGGHPKGDVFAVARIAGIQAAKRTHELIPLCHPLLLTSVKVELQAEAPDAVRIRARCRLAGQTGVEMEALTAASVAALTIYDMCKAVDRGMLIEQVQLLEKLGGKSGHYRKEEEGQA
>NC_009656.1|WP_012074480.1|1195918_1197310_+|PhoH-family-protein
MDDHGRSRPTQPTLYVLDTNVLIHDPNALLNFQEHRVAIPMTVLEELDKLKTGKHTIAAECRQAIRLIDQVLGEATPEQVEGGVPIQRGKNGPSGSLSILMSKRAEPITWLPEHLNDNKIINQLVELKSRHSGVRVVLVTKDINMRLKARACGVDAEDYHTDQLIDDVALLPRGYHSLAGSFWDRVSKVETRQDHGRTWHRVQLTDNLPAVHINEFIVDEQGFVGWIKGIHQDELTILDLHQEPLLHQEAWGLRPRDVYQSLALYALLDPDIHLVNLSGAAGSGKTILALAAAIEQTMVSKRYRRIIATRSVQGLDEDIGFLPGTEAEKMEPWLGAITDNLEALHMDDECTHGSVDYILSKVPLQFKSLNYIRGRSFQQSLILIDECQNLTPHQMKTIITRAGSGSKVICLGNLAQIDTPYLSATSSGLTYLTERFKDFPHGVHVTLQGVPRSVLAEYAEAHM
>NC_009656.1|WP_041025294.1|1205491_1207054_+|alkaline-phosphatase
MSAMDLKRRRVVQGLGAGLLLPALGAPAVIAAPNARPKLTDGVQSGDVHGDRALVWSRTDRPARMIVEWDTRSVFSEPRRLVSPITDERLDYTARIDLRGLPADQSIFYRVRFEDARDGSLSRPWFGHLRSAPGEARNIRFVWSGDTCGQGFGINPNIGGMRIYEAMRRRQPDFFLHSGDTIYADGPIPERIETEGGRIWRNRVTEAKSKVAETLDEFRGNYRYNLLDDNLRRFNAEVPQIWQWDDHETTNNWSSSKQLDERYRVKDIDLLAARARQAFLEYAPLRFQRQGRDGRIYRKVAYGPLLDVFVLDMRSYRGGNSANLQARRSGATDFLGREQLQWLKRELRGSRAQWKVIAADMPIGLCVPDGKDEHGRERWEAIANGNDGKALGRELEIADLLRFIQRAGVRNTVWLTADVHYCAAHHYSPERAAFKDFAAFWEFVAGPLNAGSFGPNALDGTFGPQVMFQKAPLVQNSSPFAGYQFFGEVEIDAQTRALTVTLRDLDGESVFSQELQPDGA
>NC_009656.1|WP_012074488.1|1207090_1209433_+|ExeM/NucH-family-extracellular-endonuclease
MHPLRNAALLGGLALLGLPVANAAELIISEYVEGSGNNKALEFYNSGSQVLDLSAYRVEFYFNGASAAGRSIELSGSLAPGRTFVLANGVADPALLALASQRVEGSWFNGNDAVLLRRRDGEVLDSLGQVGVNPGTAWGGGDVQTLDRTLVRKTDIRDGDSDPGDAFDPAAQWLGYPRDTFAHLGQHGDGQPGGGEEAGLRPIHEVQGAGAESPLVNQRVAIEGVVVGDFQNASELKGFYVQQEDATVDGDPATSEGLFVYDGGNGSDVKLGDRVRVSGQVREFNGLTELVGPLQVSVLASGVALPSPAGISLPLASADALERYEGMRVQIRQALTVNEVYNLGRYGEVLLSSGGRRMTPTNVVAPGEQARAMQARNDLDRIILDDGRSGQNPDPIRYPAPGLSAYNSLRVGDRTSAIDGVLDYSAGSYRIQPLQTPVFEAANPRPAQPVVEGRLRVASFNVLNYFNGDGKGGGFPTSRGASTAEEFQRQKAKIVAAILASKADIVGLMEIENDGYGEFAAIADLVDGLNAGLPQGQRYAFVNPNRTKLGSDEIAVGLIYRSDRVRTYGAAAVLDRTVNPEFDDSKNRPTLAQTFQEITGGERLTIAVNHLKSKGSACDGDPDTGDGQGNCNLTRARAAQALVDWLASDPTAAKDPDYLIIGDLNSYAKEDPVNVIRAAGYTDLVARQAGAGKGYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNLEFKTPRQQDSLYSAEPYRASDHDPVVIGIDLRRVAMKRHRR
>NC_009656.1|WP_012074489.1|1209601_1211185_-|peptide-chain-release-factor-3
MTTQAAEVAKRRTFAIISHPDAGKTTITEKLLLMGKAIAVAGTVKSRKSDRHATSDWMEMEKQRGISITTSVMQFPYREHMINLLDTPGHEDFSEDTYRTLTAVDSALMVLDGGKGVEPRTIALMEVCRLRDTPIVSFINKLDRDIRDPIELLDEIEAVLKIKAAPITWPIGCYKDFKGVYHLADDKIIVYVPGHGHERIETKIIDKLDSDEARAHLGDLYDNFVEQLELVQGACHTFDKDAFLKGEMTPVFFGTALGNFGVDQVLDCIVDWAPQPLSRATHERNVEPTEEKFSGFVFKIQANMDPKHRDRIAFMRICSGKYEKGMKMRHVRLGKDVKIADALTFFSSEREQLEEAYAGDIIGLHNHGTIQIGDTFSEGENFGFTGIPHFAPELFRRVRLKDPLKSKQLRQGLQELAEEGATQVFFPERNNDIILGAVGVLQFDVVASRLKEEYKVECAYEAINVWSARWIECDDEKKLKEFQDKAFENLSVDGGGHLTYLAPTRVNLSLMEERWPDIRFRATREHH
>NC_009656.1|WP_003156809.1|1211409_1211871_+|inhibitor-of-vertebrate-lysozyme-family-protein
MNGISRLLSLALLGASLHAVAVQAEEQPRLFELLGQPGYKATWHAMFKGENEVPKWVSEASGPSSPSTSLSLDGQPYVLADSCKPHDCGNNRLLVAFRGDKSAAYGLQVNLPDEPAEVMEKPSAYATYRWYGKPSKPVRELLMKQLESDPNWK
>NC_009656.1|WP_012074490.1|1211992_1214347_-|TonB-dependent-receptor-family-protein
MSPSRVLSPLSRALLLACLGGPALVTAEAAGAAEIRADARQYYRLPAEPLEQALNHLGRQAGVLIAFSPEQTAARRSQPLDGEYTLDEALAALLASSGLEARAQGGGAYILETLPVEDPASLQAVTVVGDWLADASAADVFEHPGARDVVRREQFQAQGAASTREVLERIPGVSAPLNNGTGSHDLALNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSIGNMDAVDVVRGGGAVRYGPQNVGGIVNFVTRAIPEDFATRLDVHSELSPSSSQDGLKTTHNVLIGGTGANGLGGALLYSGTRGGDWREHSDTRIDDLILKGRFQPSDEHAFSALTQYYDGEADMPGGLSAAAYRDDPYQSSRPYDKFWGRRTLASASYEYTPNASQKLNVTGFFTKTLRSGYLDQGRNLTLSPREYWVRGLETRFSQGFELGESRHEVGIGHRYVNEASHELRYWTRADSGQLPSTGSRNDRDTRGGTEANAFYIDDRIDIGNWTITPGIRYEKIDSQQKNLLKGSKDSGRYNASLPALNVIYHLTPSWNLYANTEGSFGTVQYSQMGKAVRSGDIEPEKARTWELGSRYDDGILRAELGAFLINFDNQYESNQQTDSVTARGKTRHKGIEAALAYDLADLDPLLSGFDVYASYAYVDASIREDGPNKGNQVPFSSKHKGTLGANYRTGAWSYNLDGSFQTSQYADNANTESESADGSTGRIAGWMVWSARGSYDFGPQLNDLKLGLGVKNLFDRRYYTRSFDDNNKGLYVGQPRTLYVQASVGF
>NC_009656.1|WP_012074491.1|1214440_1215394_-|FecR-family-protein
MSLPAAPKVPPQVAEQAVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWRHIEAVNQRLAGIGTPLALAVVNAPRSAQRRRALKTLLVMLAAGGGAWGLRENGSLQRWSADYATSVGERRRLALADGSRVELNSDTAVDVRFDAGERRLLLLRGEIQLSTGHDPRPLHVYSAEGRLRPVGTRFDVRQFAGRTRVAVHEGAVQVENRGGQGLLLPSGRQLDFDRERLGAPQPLPVGSGAWTDGMLVAAGMRLDEFLAEVSRYRPGRLGCDPRIGGLRISGSYPLDDSERILATLPTVLPVEVRRVTRYWVGVHPRE
>NC_009656.1|WP_012074492.1|1215390_1215900_-|sigma-70-family-RNA-polymerase-sigma-factor
MSSADLAHAAALHTLYSDHHHWLTGWLRRRLGCPQNAADLAQDTFVKVLVSRQATRIDEPRAFLTTIARRVLCNHYRRQDVERAYLEALASLPECELPSEETRAIVLETLVELDHLLDGLPPLAKETFLLARLDGLGYAEIATQLGISLSSVKRYMLKAAQRCYFFDLP
>NC_009656.1|WP_012074493.1|1216000_1216882_-|helix-turn-helix-transcriptional-regulator
MHQPSDFQVFRTLDRTSNARLLRSSTLSDGLALAHWYRDEAEILGYSDPGHHTLSLYLQGGWQTFRRDRPGLYGGPDRFCVMPAEHHSDWAVTRGLGFMHLYISPQRLAGAAVRTLDCEPRSLQLEERTYIQDAPLAALCRTLERQDWNEPAERLLCTSLAHQAVDHLLLTGCGRRTGVRWQGGLAAHVRRRLAEYIESHLEQPLELGSLAELAALSEYHFARMFRVSFGLPPHRYVLERRLARARELLAYSAQSLQEVSLACGFASQSHFIRRFREAHGATPGQYRTALKAS
>NC_009656.1|WP_012074494.1|1217007_1217910_+|DMT-family-transporter
MNLSLYLLTVLIWGTTWIAIKLQMGPVAITLSIAYRFALAALVLFAMLLLGRRLQRLDARGQRLCMAQGVCLFCLNFICFYTASQWIPSGLVAVVFSTATLWNALNARLWFGQRIASNVMAGGGLGLLGLGLLFWPELVGHQATPETFYGLGLALLGTLCFSTGNMLSSLQQRAGIRPLTGNAWSMLYGTLILLALCLVQGVPLNFDWSARYVGSLLYLAIPGSVIGFTAYLTLVGRMGPDRAAYCTVLFPVVALNISAFVEGYRWTAPALAGLALVMLGNVLVFRKPKAPALAAPARSA
>NC_009656.1|WP_012074495.1|1217929_1218907_-|D-glycerate-dehydrogenase
MKKNVFVFSRLAPEHLERLRRQFNVRLLEPKLGDIDAQYAAALPDTHGMIGVGRPLGARQLEQARQLEVISSVSVGYDNYDLDYLNQRGIALTNTPDVLTETTADLGFALLISAARRVAELDAWVKAGNWKRTVDTPQFGTDVHGKKLGILGLGRIGAAIARRGRFGFGMQVLYHGNSRKPELERELGARFLGFDELLGQADFVCVVVPLGPQTRQLIGARELGLMKPSAILVNVARGQVVDEAALVDALREKRILGAGLDVYAKEPLAESPLFALDNVVTLPHIGSATHETRRAMAERALDNFEAALRGERPLDLVNPQTWSRA

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Crispr_ID: NC_009656_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009656_4

2886935-2887202

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTAAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRT

4 spacers

The CRISPR arrays of NC_009656_4

>merge|NC_009656|4|2886935-2887202|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTAAGAAATAACTGTTTCGACAGTTCGCAATGCCAATGAAGTTCACTGCCGTATAGGCAGCTAAGAAAGTTGAAGCGCACCAGGCCCGACTCCTCACCGAGTTCACTGCCGTATAGGCAGCTAAGAAATCTCCGCCGTTACCAACGCCATGAACCACGCGGTTCACTGCCGTATAGGCAGCTAAGAAAATGCTCCTGCGCAACGAGTTGATCGACGTGCTGTTCACTGCCGTATAGGCAGCTAAGAAA

>NC_009656|4|2|2886935-2887202|PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	TAACTGTTTCGACAGTTCGCAATGCCAATGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTGAAGCGCACCAGGCCCGACTCCTCACCGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TCTCCGCCGTTACCAACGCCATGAACCACGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATGCTCCTGCGCAACGAGTTGATCGACGTGCT
GTTCACTGCCGTATAGGCAGCTAAGAAA

>NC_009656|4|4|2886935-2887202|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	TAACTGTTTCGACAGTTCGCAATGCCAATGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTGAAGCGCACCAGGCCCGACTCCTCACCGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TCTCCGCCGTTACCAACGCCATGAACCACGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATGCTCCTGCGCAACGAGTTGATCGACGTGCT
GTTCACTGCCGTATAGGCAGCTAAGAAA

>NC_009656|4|2|2886935-2887202|CRT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TAACTGTTTCGACAGTTCGCAATGCCAATGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTGAAGCGCACCAGGCCCGACTCCTCACCGA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TCTCCGCCGTTACCAACGCCATGAACCACGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	ATGCTCCTGCGCAACGAGTTGATCGACGTGCT
GTTCACTGCCGTATAGGCAGCTAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009656.1\|WP_012075650.1\|2894246_2895215_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
NC_009656.1\|WP_041025343.1\|2891020_2892439_-\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NC_009656.1\|WP_012075636.1\|2866798_2867713_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NC_009656.1\|WP_012075651.1\|2895218_2896904_-\|alpha,alpha-trehalase-TreA	unknown	unknown	gnl\|CDD\|183936
NC_009656.1\|WP_003156532.1\|2886026_2886539_-\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|226144
NC_009656.1\|WP_012075638.1\|2870157_2870922_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749
NC_009656.1\|WP_012075645.1\|2888737_2888911_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_041025342.1\|2885206_2885935_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009656.1\|WP_086008390.1\|2887237_2888400_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009656.1\|WP_012075649.1\|2893285_2894146_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_009656.1\|WP_012075646.1\|2889826_2889994_+\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012075639.1\|2871013_2884042_+\|pyoverdine-non-ribosomal-peptide-synthase/polyketide-synthase-PvdL	unknown	unknown	gnl\|CDD\|235564
NC_009656.1\|WP_003155282.1\|2897255_2897681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695
NC_009656.1\|WP_003156700.1\|2868960_2869524_-\|RNA-polymerase-factor-sigma-70	unknown	unknown	gnl\|CDD\|180803
NC_009656.1\|WP_003156704.1\|2866292_2866538_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012075637.1\|2867868_2868882_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_009656.1\|WP_003089647.1\|2892517_2893198_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NC_009656.1\|WP_171941869.1\|2884174_2884543_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012075641.1\|2884551_2884743_-\|hypothetical-protein	unknown	unknown	unknown
NC_009656.1\|WP_012075647.1\|2890065_2890986_-\|transporter	unknown	unknown	gnl\|CDD\|226763

Protein	Function_ID	Function_description	E-value
NC_009656.1\|WP_012075650.1\|2894246_2895215_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	9.96481e-101
NC_009656.1\|WP_041025343.1\|2891020_2892439_-\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.62248e-157
NC_009656.1\|WP_012075636.1\|2866798_2867713_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	1.66466e-155
NC_009656.1\|WP_012075651.1\|2895218_2896904_-\|alpha,alpha-trehalase-TreA	gnl\|CDD\|183936	PRK13272, treA, alpha,alpha-trehalase TreA.	0
NC_009656.1\|WP_003156532.1\|2886026_2886539_-\|Bro-N-domain-containing-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	4.84266e-39
NC_009656.1\|WP_012075638.1\|2870157_2870922_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.11834e-88
NC_009656.1\|WP_012075647.1\|2890065_2890986_-\|transporter	gnl\|CDD\|226763	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion].	1.20547e-126
NC_009656.1\|WP_041025342.1\|2885206_2885935_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.32091e-24
NC_009656.1\|WP_086008390.1\|2887237_2888400_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.96055e-86
NC_009656.1\|WP_012075649.1\|2893285_2894146_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.92935e-92
NC_009656.1\|WP_012075639.1\|2871013_2884042_+\|pyoverdine-non-ribosomal-peptide-synthase/polyketide-synthase-PvdL	gnl\|CDD\|235564	PRK05691, PRK05691, peptide synthase; Validated.	0
NC_009656.1\|WP_003156700.1\|2868960_2869524_-\|RNA-polymerase-factor-sigma-70	gnl\|CDD\|180803	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated.	2.49324e-104
NC_009656.1\|WP_012075637.1\|2867868_2868882_+\|acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.45551e-65
NC_009656.1\|WP_003089647.1\|2892517_2893198_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	4.87249e-56
NC_009656.1\|WP_003155282.1\|2897255_2897681_+\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	1.58191e-24

>NC_009656.1|WP_003156532.1|2886026_2886539_-|Bro-N-domain-containing-protein
MHGHTQLAPHYFFRQQRLLRALLIDDQAWFVLDDFSRLLDLPCPEQLLTRLDDDQARQEALHTERGEDEAQWLISESGAYAALIYYQQGDGGDLRRWLSGEVVPELRSAADDSDMPRHVKLRWERQVVHMLDWQGKLWVNFSEMPDLLQRRDGPTTPLDWRRWLRKLRPL
>NC_009656.1|WP_041025342.1|2885206_2885935_+|class-I-SAM-dependent-methyltransferase
MSQNIYDCDDFFAGYSQLPRSREGLVGAPEWPALRAMLPELTGKRVVDLGCGFGWFCRWVREQGAAEVLGIDVSQNMLGKARAMTDDPAIHYLRQDLETLELPAAAFDFAYSSLALHYIEDLRRLLGTLHAALRPGGGLVFSIEHPIYMAPSQPGWRQDGEGRRTWPLDGYSIEGPRSTDWLARGVIKHHRTLGTLLNLLLELGFRLTRVEEWSPSDAQLAARPELAEERERPMLLLVSALR
>NC_009656.1|WP_012075641.1|2884551_2884743_-|hypothetical-protein
MHFHDSEVFQYSKACVIRAESGILPEYRGSNQSISFLTRQVLRYKLLNPGKRLLFLDTLIHPS
>NC_009656.1|WP_171941869.1|2884174_2884543_-|hypothetical-protein
MDDVWPCHCDLESHHVTFLEHLIAQFSFKRSSNDPLVVDTGWTTTEADHERAHWATHSNPNVRFFLDRNPEYHKGNGLITVFPITLKNIFTATRRFKRSSSVKRKQHQRYNAASAKVGNIAL
>NC_009656.1|WP_012075639.1|2871013_2884042_+|pyoverdine-non-ribosomal-peptide-synthase/polyketide-synthase-PvdL
MMDAFELPTTLVQALRRRAVQEPERLALRFLAEDDGEGVVLSYRDLDLRARSIAAALQAHAQLGERAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLVLTSADLREPLLQMNAQLSAANAPQLLCVDQLDPAGAEAWQEPALRPEHIAFLQYTSGSTALPKGVQVSHGNLVANEVLIRRGFGIGADDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPRYFLERPVRWLEAISQYGGTVSGGPDFAFRLCSERVAESALQRLDLSGWRVAFSGSEPIRQDSLERFAGKFAASRFDASSFFACYGLAEATLFVTGGQRGQGIPALAVDGEALARNRIAEGEGSVLMCCGRSQPEHAVRIVDAASGEVLGDDSVGEIWAAGPSIAHGYWRNPEASAKTFVERDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDIERTVESEVPSARKGRVAAFAVKVDGEEGIGIAVEIGRGIQKSVPARELIDSIRQAVAEVCQEAPKVVALLNPGALPKTSSGKLQRSACRLRLEDGSLDSYAQFPGLEANEEHGATPDDDELLACIGEIWKAQLGVAQVAPRDHFFLLGGNSIGAAQVVAQVRDSLGVALNLRQLFEAPTLQGFSAVVARQLAEGAAEEAPIAHLPRGIDLPQSAAQQRLWLTWQIDPRGAAYNIPGGLRLRGELDEAALRASFQRLVERHEALRTRFLERDGVALQRIDERGEFAWQFIDLARLAEHERAAAAAQRREAEAQQPFDLEKGPLLRVSLVRLDEQEHQLWVTLHHIVADGWSLNLLLDEFSRLYAEACGGQPADLAPLELHYAEFAAWQRQWLDAGEGARQLAYWRERLGDAAPVLELATDHPRTARQASPAARYSLRVDEALARAIREAALDHEASVFMWLLAAFQALLHRHSGQGEIRIGVPSANRQRLETQGLVGFFINTLVLRGRPRARQPFAALLGEAREATLGAQANQDLPFDQVLAACGQGGQLFQVLFNHQQRDLSALRRLPGLLADELPWHSREAKFDLQLQSEEDARGRLTLNFDYAADLFDEASIRRFAAQYLELLRQVAEDPQRCLGDIALVDAEQAARLAEWGSAPCAPARAWLPVLLERQLAQSAERVALEWDGGSLGYAELHARANRLAHYLRDKGVGPDVRVAICAERSPQLLVGLLAIVKAGGAYVPLDPDYPSERLAYMLADSGVELLLTQAHLFERLPGAEGVTPICLDSLKLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDGDDVLMQKAPVSFDVSVWECFWPLLTGCRLVLAAPGEHRDPARLVELVRQFGVTTLHFVPPLLQLFIDEPGVAACGSLRRLFSGGEALPAELRNRVLQRLPAVALHNRYGPTETAINVTHWQCRAEDGERSPIGRPLGNVVCRVLDAEFNLLPAGVAGELCIGGQGLARGYLGRPALSAERFVADPFSADGERLYRTGDRARWNADGVLEYLGRLDQQVKLRGFRIEPEEIQARLLAQPGVAQAVVVIREGVAGSQLVGYYTGAAGAEAEAEQNQRLRAALQAELPEYMVPAQLMRLAQMPLGPSGKLDTRALPEPVWQQREHVEPQTELQRRIAAIWSEVLGLPRVGLRDDFFELGGHSLLATRIVSRTRQACDVDLPLRALFEASELEVFCEQVRAAQAAGRTDSHGAIRRIDREQPVPLSYSQQRMWFLWQLEPDSPAYNVGGLARLSGPLDVARFEAALQALVQRHETLRTTFPSVDGVPVQRVHGDGGLHMDWQDFSALDRDSRQQHLQTLADSEAHRPFDLESGPLLRVCLVKMAEREHYLVVTLHHIVTEGWAMDIFARELGALYEAFLDDRESPLEPLPVQYLDYSVWQREWLDSGERQRQLDYWKAQLGNEHPLLELPGDRPRPPVQSHRGDLYRFDLSPELAERVRRFNAARGLTMFMTMTATLAALLYRYSGQQDLRIGAPVANRIRPESEGLIGAFLNTQVLRCRLDGQMSVGELLEQVRQTVIDGQSHQDLPFDHLVEALQPPRSAAYNPLFQVMCNVQRWEFQQTRQLAGMTVEYIANDARATKFDLNLEVTDLDQRLGCCLTYSRDLFDEPRIARMAGHWQNLLEALLGDPQRRIAELPLFAAEEREQLLLAGTAGEAGLQDTLHGLFAARVAASPQAPALTFAGQTLSYAELDARSNRLARVLRRHGVGPEVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLQYMIEDSGVRLLLSHAALFEALGELPAGVARWCLEEDAAALDAEDPAPLAALSGPQHQAYLIYTSGSTGKPKGVAVSHGEIAMHCAAVIERFGMRADDCELHFYSINFDAASERLLAPLLCGARVVLRAQGQWGAEEICELIRAEGVSILGFTPSYGSQLAQWLEGQGRQLPVRMCITGGEALTAEHLQRIRQAFAPASFFNAYGPTETVVMPLACLAPECLEEGAASVPIGSVVGARVAYILDADLALVPQGATGELYVGGAGLARGYHERPALSAERFVPDPFAAEGGRLYRTGDLVRLCDNGLVEYVGRIDHQVKIRGFRIELGEIEARLLEHPQVREALVLALDSPSGKQLAGYVASAVAAQDEDAQAALREALKTHLKQQLPDYMVPAHLLLLASLPLTANGKLDRRALPAPDPALNRQAYEAPRSVLEQQLAGVWREVLNVERVGLGDNFFELGGDSILSIQVVSRARQLGIHFSPRDLFQHQTVQSLAAVARHSQASQAEQGPVQGDSALTPIQHWFFDLPLVRREHWNQSLLLQPRQAIDLGLLRKSLQRLVEQHDALRLAFRQVDGEWLAQHRPLREQELLWHVPVQSFDECAELFAKAQRSLDLEQGPLLRAVLVDGPAGEQRLLLAIHHLAVDGVSWRVLLEDLQQVYRQLAAGAEPSLPAKTSAFRDWAGRLQAYAGSESLREELGWWQARLGGQPAEWPCDRPQGDNREALAESLSLRLDPQRTRQLLQQAPAAYRTQVNDLLLTALARVLCRWSGQPSALVQLEGHGREALFDDIDLTRSVGWFTSAYPLRLTPAQSPGESIKAIKEQLRAVPHKGLGYGVLRYLADPAVRQAMAALPTAPITFNYLGQFDQSFTDALFQPLDQPTGPIHDEQAPLPNELSVDGQVYGGELVLRWTYSRERYDARTVNELAQAYLAELQALIEHCLEDGAGGLTPSDFPLAQLSQAQLDALAVPAGEIEDVYPLTPMQEGLLLHTLLEPGTGIYYMQDRYRIDSPLDPERFAAAWQAVVARHEALRASFVWNAGETMLQVIHKPGRTRIEFLDWGELPEDGHEERLQALHKREREAGFDLLEQPPFHLRLIRLGEARYWFMMSNHHILIDAWCRGLLMNDFFEIYGALGEGRTANLPTPPRYRDYIAWLQRQDLEQSRRWWSESLRGFERPTLVPSDRPFLREHAGESGGMIVGDRYTRLDAADGARLRELAQRYQLTVNTFAQAAWALTLRRFSGERDVLFGVTVAGRPVGMPEMQRTVGLFINSIPLRVRMPAAGQRCTVREWLNRLFERNLELREHEHLPLVVIQESSELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNASSDSGRTHTNFPLTVVCYPGDDLGLHLSYDQRYFEAPTIERLLGEFKRLLLALVDGFHGELEALPLLGEDERVFLLDGCNRSARDYPLEQGYVRLFEAQVAAHPQRIAASCLEQRWSYAELNRRANRLGHALRAAGVGIDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGHPTQRLTRIVELSRTPVLVCTQACREQALALFDELGCAARPRLLVWDEIQQGAGAEHDPQVYSGPQNLAYVIYTSGSTGLPKGVMVEQAGMLNNQLSKVPYLELDENDVIAQTASQSFDISVWQFLAAPLFGARVAIVPNAIAHDPQGLLAHVGEQGITVLESVPSLIQGMLAEERQALDGLRWMLPTGEAMPPELARQWLKRYPRIGLVNAYGPAECSDDVAFFRVDLASTESTYLPIGSPTDNNRLYLLGAGADDAFELVPLGAVGELCVAGTGVGRGYVGDPLRTAQAFVPHPFGAPGERLYRTGDLARRRADGVLEYVGRIDHQVKIRGFRIELGEIEARLHERADVREAAVAVQDGANGKYLVGYLVPGETPRSSADSPAGLMVEQGAWFERIKQQLRADLPDYMVPLHWLVLERMPLNANGKLDRKALPALDIGQMQNQAYQAPRNELEETLARIWAEVLKVERVGVFDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELASYIESLAPSEISEQKAERLNDLMSKLEML
>NC_009656.1|WP_012075638.1|2870157_2870922_+|thioesterase
MSPSASLQLFCLPYSGASAVLYNRWQSRLPAWIRLQPLELPGRGLRFAEALHNDAASLVAQLAGELPGLFENATPYAFFGHSLGGLLAFELAHAMRRRGLEEPLALFLSGVSAPAENDLSGYRRAREDAELVAALRDYRGTPEAVFNDPSLMQMLLPVVRADFLVTGSYRYQLRAPLAAALHVFGGREDRLRSAELLGWLREAGGEFSLDLLDGQHFFIREQEAQLLRHLRRYAGQHLLRWRQERVRESLRAAS
>NC_009656.1|WP_003156700.1|2868960_2869524_-|RNA-polymerase-factor-sigma-70
MSEQLSTRRCDTPLLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRNLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPEASHINYATLEHIADALTELPGRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVTAERQGDNLASLSARR
>NC_009656.1|WP_012075637.1|2867868_2868882_+|acetyltransferase
MPLLNSLTVLPLPGGQRLSGDETDSRLSLGLDGALLLRLRLERTDTEIRLALEELPGGDAEHALWAASYWLFARDPECQRLVWSLPWVPEKSLANGMLAGTAEAGTYVCERGRFWQLPWPWLPLAQSCYPQSMALTDGKRHPLRRPKPRGEVYRRFDARLECWVSLRTVDIERDLERFHRWQNSPRVAEFWQEDGSLEQHRERLRQLEADPHALGLIGCFDDEPFAYFEAYWAKEDRIAPFYAADDYDRGIHMLVGEEAHRGPHKVACWLSALVHYLFLDDPRSQRVVAEPRADNARMIGHMHNLCFHCEKEFDFPHKRAALMIIGRERFFERCRLA
>NC_009656.1|WP_012075636.1|2866798_2867713_+|polyphosphate-kinase-2
MDSYGDTSGRLGRDWLDRHDEELEQELLDDELNLDELFGPEQEDAPGELGRRRYFRELFRLQRELVKLQNWVVHTGHKVVILFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWYFQRYVSHLPAGGEIVLFDRSWYNRAGVERVMGFCNDEQYEEFFRSVPEFEKMLARSGIQLLKYWFSISDAEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEAYTKAKETMLERTHIPEAPWWVVQADDKKRARLNCIHHLLQQMPYREVPQPPVHLPERLRHADYVRHPTPGEIIIPEVY
>NC_009656.1|WP_003156704.1|2866292_2866538_-|hypothetical-protein
MQAFTRQQLIDALNAQSSDLATLQSLIVGLYLWIRDSHGQTSVDAAFQRAREEARQFRRQAGNQADERLILQLAEIIREQP
>NC_009656.1|WP_086008390.1|2887237_2888400_-|IS3-family-transposase
MSKQRRTFSAEFKREAAALVLEQGYSHIDACRSLGVVDSALRRWVKQLETERQGVTPKSKALTPEQQKIQELEARINRLEREKAIFKKGYRSLDVGRTRSYALIDQLSEQESVEVVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVLDLHTRRVIGWAFSAKPDAELVIKALGMAYEQRGRPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNSPMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG
>NC_009656.1|WP_012075645.1|2888737_2888911_-|hypothetical-protein
MFESAKACLKSAINVLALTCLLDENEEPGDTLAYINGALLKLVSDALSEIEAAHPRQ
>NC_009656.1|WP_012075646.1|2889826_2889994_+|hypothetical-protein
MSKTKHWSGQACPKTAAYGQHDDKDDSYAGAKHDRQVDKGETFPPSLNNHHFQEK
>NC_009656.1|WP_012075647.1|2890065_2890986_-|transporter
MRAALLPTLVALSTVLCLEARADAVALPPLALGNTSFMDGVSRPGMLFELPLQYVRANNASDAGGHSVPGRQRVRSTTLLPHFAYLSQNTLLGAHYGAEVLLPLVRLDLDIDGGPDGRRTRQGDLIVSPLMLQWGPATLFGRPYWQRLNFVFSLPTGDYDKDAAINTGSNTWIFNPHYAFTWELGERLELSGRLHYAWISRNDDPSPRLAADDIQPGQALHANFSVSYALDEHWRVGLAGYQLKQISADRIDGHRQADSRERVFGIGPGVMYSHGKQTLFANLYAESGARNRSEGSQLTLRYLLAF
>NC_009656.1|WP_041025343.1|2891020_2892439_-|OprD-family-porin
MPESFMKCGVSLCLALSTAPGAALADDSLGHRDNISTGLNQRQKAEMKVPPGFVEGSTLNGFIRNYYFARDNHDTPARRDQREWAQGFMLSFRSGYTDTPVGVGLDVHGFYGLRLDGGGGSGGSGVLPLDARGRPQDRFSAAGAALKLRGFDSLVKIGDQLLENPVIASGVSRMVPQSYRGVTLKNYHLQSLDFDAGFVEATRLRNQSGHSPLTTGYGNGTKGGIAADRESPHIAWLGANYSAPGGAVANLYSGRLADIWNQHYLGLSQPFRLSGRMTLTPWLHYYKTRDQGRSQLGRIDNDLYNAGLTLAGGGQSLSFSLQKVDGDTPFDFIAQNDRTFLYESNAMQYADFNGPGERSWKIQYQASLAFLAAPDWQFGAAYGRGEADLTRVDPHSAGYGYLYNPDGRNARHWERDLSLRYAFPAGPAKGLSVTLRWATHRPGEGYTAPGNTRGNSSSDEYRVVVDYPIRLL
>NC_009656.1|WP_003089647.1|2892517_2893198_-|hydrolase
MSAPANFNGQTPKIDPANAAMLLIDHQSGLFQTVKDMPMTELRANATTLAKVATLAKIPVITTASVPQGPNGPLIPEIHEAAPHAQYVARKGEINAWDNPEFVAAVKATGKKQLIIAGTITSVCMAFPSIAAVHDGYQVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTAAVCSEIQRTWNRDDAVQFAEAYSAVFPHYQLLIESYAKAQAVVTNHEQLDSQRK
>NC_009656.1|WP_012075649.1|2893285_2894146_-|pirin-family-protein
MKKVLGIYGNANRHWVGDGFPVRSLFSYNTLGQHISPFLLLDYAGPADFPPAQHRRGVGQHPHRGFETVTIVYQGEVEHHDSTGAGGHIGPGDVQWMTAASGILHEEYHSERFRTTGGTLEMVQLWVNLPSRDKMNPPRYQTLLDADIPRVGLPDRAGELRVIAGRHGRHQGPALTHSPLAVWDIQLNAGKHLGLDLPRGHTCAVVVLRGTLAVGDEIVREAQVALLDREDERLELEANNDVRLLVLSGEPLDEPIIGYGPFVMSSQAEIDQAIEDFENGRFIRAH
>NC_009656.1|WP_012075650.1|2894246_2895215_+|LysR-family-transcriptional-regulator
MSGEPVFDLNELFIYAKVVEHGGFAPAGRVLGIPKSTLSRKVAQLEARLGVRLLQRSTRQFQVTEIGQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGTVRLTCSTPLLHFGLASMLARFMAQYPSVELYVKTFNRRVDVIAEGYDLSLSLRFPPLEDSDLVMKVLARSPQLLVASPELLARYRPPELPADLSAMPYVGWERSRLDGSLRLVGPDGSSASLNLRPQLLSDDLGSLRQAVLEGVGIGGLPSCVVGRDLAERRLVRVLPYWTPVEGMVVAMFPSRRGLLPSVRALIDFLGEAFGEAHRRQVEITEGAMPEPALHG
>NC_009656.1|WP_012075651.1|2895218_2896904_-|alpha,alpha-trehalase-TreA
MPARTTLPRAMLAAWALLLLAACSQGPAPAPPASWGWQDASGERAIAPDQAYPELFQAVQESRLFSDQKHFVDALPLREPARIRADYLSEKERPGFDLRAFVARNFEESGSVETAPPEAGADLASHISDLWPALTRHYEQVPAHSSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESGQHQRVRDMVDNFAYLIDTYGHIPNGNRSYYLSRSQPPFFAYMVDLQARREGDAAYRRYLPQLQKEYAYWMQGSTGLRPNEARLRVVRLGDGSLLNRYWDNRDTPRQESYLEDRATAARAPQRPASEVYRDLRAGAESGWDFSSRWLDDGRELASIRTTAIVPVDLNALLYHLERTIAKACASSALEACERGYGTRAEKRRQAIEEHLWHPDGFYADYDWQRRRPIERINAATLFPLYTGLASAERAARTAGSVAANLLRPGGLATTTRASGQQWDEPNGWAPLQWVAVQGLRAYGRDRLAADIGRRFLAQVRQVYEREGKLVEKYDISGGQGGGGGGEYPLQDGFGWSNGVTLELLKLYGAATPAAAPTVGGTTAGAARAW
>NC_009656.1|WP_003155282.1|2897255_2897681_+|hypothetical-protein
MATALRFRPLDAFYNVLNPVPFGFFVAALVFDAAYFATAEVMWGKSAAWLITLGLLFAILPCVVDLLRVWLLRRAAVVAAARVASLLKFAGIVLAIFNAFVHSRDAYGVMPVGLWLSIATVLLLALGEALLAVSEEEVAHG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NC_009656.1	4612553-4612583	2	0.935
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_009656.1	4612552-4612583	2	0.938

1. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to position: 4612553-4612583, mismatch: 2, identity: 0.935

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggaaacatcacgaccagcgcggacatcag	Protospacer
**** ******** *****************

2. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to position: 4612552-4612583, mismatch: 2, identity: 0.938

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggaaacatcacgaccagcgcggacatcag	Protospacer
***** ******** *****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	37076-37106	0	1.0
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	33823-33853	0	1.0
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	11498-11528	0	1.0
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	50072-50102	0	1.0
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	25915-25945	0	1.0
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	46852-46882	0	1.0
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	38868-38898	0	1.0
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	37075-37106	0	1.0
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	33822-33853	0	1.0
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	11497-11528	0	1.0
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	25915-25946	0	1.0
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	50071-50102	0	1.0
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	46851-46882	0	1.0
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	38867-38898	0	1.0
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	JX403939	Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome	19996-20027	0	1.0
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	KU310943	Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome	35155-35186	0	1.0
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NC_016762	Pseudomonas phage phi297, complete genome	20315-20346	0	1.0
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP027175	Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1	16260-16290	1	0.968
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP015000	Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence	650-680	1	0.968
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP049162	Pseudomonas aeruginosa strain MS14403 plasmid pMS14403A, complete sequence	47802-47832	1	0.968
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP015000	Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence	650-681	1	0.969
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP027175	Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1	16259-16290	1	0.969
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP049162	Pseudomonas aeruginosa strain MS14403 plasmid pMS14403A, complete sequence	47802-47833	1	0.969
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	101193-101223	2	0.935
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	101193-101224	2	0.938
NC_009656_3	3.9\|1204769\|32\|NC_009656\|CRISPRCasFinder	1204769-1204800	32	MN096267	Pseudomonas phage vB_PaS_IME307, complete genome	12681-12712	2	0.938
NC_009656_3	3.10\|1204770\|31\|NC_009656\|CRT	1204770-1204800	31	MN096267	Pseudomonas phage vB_PaS_IME307, complete genome	12682-12712	2	0.935
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	AB910392	Pseudomonas phage KPP23 DNA, complete sequence	32085-32116	2	0.938
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	MK443266	UNVERIFIED: Pseudomonas phage RSP, complete genome	29415-29446	3	0.906
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	MK803322	Pseudomonas phage RSP, complete genome	44897-44928	3	0.906
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1917654-1917684	6	0.806
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP025992	Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence	4235-4265	6	0.806
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	175163-175193	6	0.806
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP025992	Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence	4235-4266	6	0.812
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	619687-619717	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	477202-477232	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	619696-619726	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	641883-641913	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	472989-473019	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	615317-615347	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	252647-252677	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	590125-590155	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	695011-695041	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	157380-157410	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1758086-1758116	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1758733-1758763	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1758109-1758139	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1758109-1758139	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1758109-1758139	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1758109-1758139	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	618782-618812	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1310914-1310944	7	0.774
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	590103-590133	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	113416-113446	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	76322-76352	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	290275-290305	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_KY433363	Proteus mirabilis strain R997 plasmid pR997, complete sequence	36404-36434	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	11604-11634	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	796223-796253	7	0.774
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NC_022533	Plautia stali symbiont plasmid pPstS1 DNA, complete genome	6448-6478	7	0.774
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1917654-1917685	7	0.781
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	113416-113447	7	0.781
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_022533	Plautia stali symbiont plasmid pPstS1 DNA, complete genome	6447-6478	7	0.781
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_KY433363	Proteus mirabilis strain R997 plasmid pR997, complete sequence	36404-36435	7	0.781
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	11604-11635	7	0.781
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	175163-175194	7	0.781
NC_009656_3	3.10\|1204770\|31\|NC_009656\|CRT	1204770-1204800	31	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	396616-396646	7	0.774
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	188181-188212	7	0.781
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	234789-234820	7	0.781
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	MT310895	Arthrobacter phage StevieBAY, complete genome	42359-42390	7	0.781
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	KU647629	Arthrobacter phage BarretLemon, complete genome	41812-41843	7	0.781
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	845651-845682	7	0.781
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	798760-798791	7	0.781
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	268724-268754	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	55361-55391	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1757901-1757931	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1319331-1319361	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	678701-678731	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	191567-191597	8	0.742
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	MF063068	Pseudomonas phage Noxifer, complete genome	44703-44733	8	0.742
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	226315-226345	8	0.742
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	206642-206672	8	0.742
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	619687-619718	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	477202-477233	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	252647-252678	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	619696-619727	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	590125-590156	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	641883-641914	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	472989-473020	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	615317-615348	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	123913-123944	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1319330-1319361	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	618782-618813	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1310914-1310945	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	590103-590134	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1758085-1758116	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1758732-1758763	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1758108-1758139	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1758108-1758139	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1758108-1758139	8	0.75
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1758108-1758139	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	76322-76353	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	290275-290306	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	796222-796253	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_AP022622	Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_1	62899-62930	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_021279	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 2, complete sequence	72280-72311	8	0.75
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	26175-26206	8	0.75
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NC_010683	Ralstonia pickettii 12J plasmid pRPIC01, complete sequence	21021-21052	8	0.75
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	440297-440328	8	0.75
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	524991-525022	8	0.75
NC_009656_3	3.1\|1204530\|31\|NC_009656\|PILER-CR,CRT	1204530-1204560	31	MN927226	Escherichia phage vB_EcoS_XY2, complete genome	40369-40399	9	0.71
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP054608	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence	35689-35719	9	0.71
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	AF151676	Bacteriophage P-EibE ORF-191E (orf-191E), immunoglobulin-binding protein EibE (eibE), and ORF-156E (orf-156E) genes, complete cds	2820-2850	9	0.71
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_CP019063	Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence	408134-408164	9	0.71
NC_009656_3	3.2\|1204590\|31\|NC_009656\|PILER-CR,CRT	1204590-1204620	31	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	106720-106750	9	0.71
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	268723-268754	9	0.719
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1757901-1757932	9	0.719
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	55360-55391	9	0.719
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	191566-191597	9	0.719
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	MF063068	Pseudomonas phage Noxifer, complete genome	44703-44734	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	106720-106751	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP019938	Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence	95023-95054	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_LT703509	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 5	18119-18150	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP015274	Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 2, complete sequence	34268-34299	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	487969-488000	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP019223	Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_2, complete sequence	39076-39107	9	0.719
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP045965	Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_02, complete sequence	25529-25560	9	0.719
NC_009656_3	3.9\|1204769\|32\|NC_009656\|CRISPRCasFinder	1204769-1204800	32	NC_022044	Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence	150017-150048	9	0.719
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	MG744354	Lactobacillus phage Satyr, complete genome	60277-60308	9	0.719
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	KY381600	Lactobacillus phage P2, complete genome	20606-20637	9	0.719
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	471377-471408	9	0.719
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	105934-105965	9	0.719
NC_009656_3	3.5\|1204529\|32\|NC_009656\|CRISPRCasFinder	1204529-1204560	32	MN927226	Escherichia phage vB_EcoS_XY2, complete genome	40369-40400	10	0.688
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	AF151676	Bacteriophage P-EibE ORF-191E (orf-191E), immunoglobulin-binding protein EibE (eibE), and ORF-156E (orf-156E) genes, complete cds	2820-2851	10	0.688
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NZ_CP019063	Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence	408134-408165	10	0.688
NC_009656_3	3.6\|1204589\|32\|NC_009656\|CRISPRCasFinder	1204589-1204620	32	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	29335-29366	10	0.688
NC_009656_4	4.3\|2887083\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887083-2887114	32	MN586022	Gordonia phage Chidiebere, complete genome	76314-76345	10	0.688
NC_009656_4	4.4\|2887143\|32\|NC_009656\|PILER-CR,CRISPRCasFinder,CRT	2887143-2887174	32	NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	146605-146636	10	0.688

1. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggccagcaacagcgtcaccctcgg	Protospacer
*******************************

2. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 0, identity: 1.0

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggccagcaacagcgtcaccctcgg	Protospacer
*******************************

3. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggccagcaacagcgtcaccctcgg	Protospacer
*******************************

4. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 0, identity: 1.0

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggccagcaacagcgtcaccctcgg	Protospacer
*******************************

5. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggccagcaacagcgtcaccctcgg	Protospacer
*******************************

6. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 0, identity: 1.0

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcaacatcaccaccagcgcggacatcag	Protospacer
*******************************

7. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcaacatcaccaccagcgcggacatcag	Protospacer
*******************************

8. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagcaacagcgtcaccctcgg	Protospacer
********************************

9. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 0, identity: 1.0

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagcaacagcgtcaccctcgg	Protospacer
********************************

10. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagcaacagcgtcaccctcgg	Protospacer
********************************

11. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagcaacagcgtcaccctcgg	Protospacer
********************************

12. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 0, identity: 1.0

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagcaacagcgtcaccctcgg	Protospacer
********************************

13. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 0, identity: 1.0

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcaccaccagcgcggacatcag	Protospacer
********************************

14. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcaccaccagcgcggacatcag	Protospacer
********************************

15. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to JX403939 (Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
atgctcctgcgcaacgagttgatcgacgtgct	Protospacer
********************************

16. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to KU310943 (Pseudomonas phage YMC11/07/P54_PAE_BP, complete genome) position: , mismatch: 0, identity: 1.0

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
atgctcctgcgcaacgagttgatcgacgtgct	Protospacer
********************************

17. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NC_016762 (Pseudomonas phage phi297, complete genome) position: , mismatch: 0, identity: 1.0

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
atgctcctgcgcaacgagttgatcgacgtgct	Protospacer
********************************

18. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP027175 (Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1) position: , mismatch: 1, identity: 0.968

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggcaagcaacagcgtcaccctcgg	Protospacer
********** ********************

19. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP015000 (Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence) position: , mismatch: 1, identity: 0.968

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggcaagcaacagcgtcaccctcgg	Protospacer
********** ********************

20. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP049162 (Pseudomonas aeruginosa strain MS14403 plasmid pMS14403A, complete sequence) position: , mismatch: 1, identity: 0.968

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggcaagcaacagcgtcaccctcgg	Protospacer
********** ********************

21. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP015000 (Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggcaagcaacagcgtcaccctcgg	Protospacer
*********** ********************

22. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP027175 (Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1) position: , mismatch: 1, identity: 0.969

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggcaagcaacagcgtcaccctcgg	Protospacer
*********** ********************

23. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP049162 (Pseudomonas aeruginosa strain MS14403 plasmid pMS14403A, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggcaagcaacagcgtcaccctcgg	Protospacer
*********** ********************

24. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 2, identity: 0.935

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggaaacatcacgaccagcgcggacatcag	Protospacer
**** ******** *****************

25. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 2, identity: 0.938

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggaaacatcacgaccagcgcggacatcag	Protospacer
***** ******** *****************

26. spacer 3.9|1204769|32|NC_009656|CRISPRCasFinder matches to MN096267 (Pseudomonas phage vB_PaS_IME307, complete genome) position: , mismatch: 2, identity: 0.938

atcgtgatcaatgcccgccatgatttcgccgg	CRISPR spacer
atcgtgatcaatgcccgccacgacttcgccgg	Protospacer
********************.**.********

27. spacer 3.10|1204770|31|NC_009656|CRT matches to MN096267 (Pseudomonas phage vB_PaS_IME307, complete genome) position: , mismatch: 2, identity: 0.935

tcgtgatcaatgcccgccatgatttcgccgg	CRISPR spacer
tcgtgatcaatgcccgccacgacttcgccgg	Protospacer
*******************.**.********

28. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to AB910392 (Pseudomonas phage KPP23 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

tctccgccgttaccaacgccatgaaccacgcg	CRISPR spacer
tctccgccattaccgacgccatgaaccacgcg	Protospacer
********.*****.*****************

29. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to MK443266 (UNVERIFIED: Pseudomonas phage RSP, complete genome) position: , mismatch: 3, identity: 0.906

tctccgccgttaccaacgccatgaaccacgcg	CRISPR spacer
tctccgccattaccgacgccatgaaccacgca	Protospacer
********.*****.****************.

30. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to MK803322 (Pseudomonas phage RSP, complete genome) position: , mismatch: 3, identity: 0.906

tctccgccgttaccaacgccatgaaccacgcg	CRISPR spacer
tctccgccattaccgacgccatgaaccacgca	Protospacer
********.*****.****************.

31. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.806

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cggtgagcgccagcaacagcgtcaacctggg	Protospacer
**..**  **************** *** **

32. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP025992 (Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence) position: , mismatch: 6, identity: 0.806

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcaacatcaccaccagcacgagcaataa	Protospacer
********************.**..** .*.

33. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

gcggcaac--atcaccaccagcgcggacatcag	CRISPR spacer
--ggccgccgatcaccaccagcgcggtcagcag	Protospacer
  *** .*  **************** ** ***

34. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP025992 (Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence) position: , mismatch: 6, identity: 0.812

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcaccaccagcacgagcaataa	Protospacer
*********************.**..** .*.

35. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

36. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

37. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

38. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

39. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

40. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

41. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

42. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

43. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
agacgacggccagcagcagcgtcgcgagcag	Protospacer
 **************.*******.*   *.*

44. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacaacggccagcaacagcgtgaaaagcgc	Protospacer
****.***************** *    **

45. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

46. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

47. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

48. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

49. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

50. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

51. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

52. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

53. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
caccgaaggccagcaaccgcgtcaccagcag	Protospacer
*. *** ********** ********  *.*

54. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP040453 (Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aggcgaacatcaccaccagcggtgacatcaa	Protospacer
. *  ****************  *******.

55. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcagcttcaccaccagcgcggcggccac	Protospacer
******.* ***************  ..**

56. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcgacatcaccaccagcgtggtgccgag	Protospacer
*****.***************.**   . **

57. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_KY433363 (Proteus mirabilis strain R997 plasmid pR997, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
actgctgcatcacctccagcgcgaacatcat	Protospacer
.* ** .******* ********.******

58. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag-	CRISPR spacer
tcggcagcatcaccaccagcccgg-cgtcgaa	Protospacer
 *****.************* *** *.**..

59. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
ccgtcgccatcaccagcggcgcggacatcac	Protospacer
 ** *. ******** *.************

60. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NC_022533 (Plautia stali symbiont plasmid pPstS1 DNA, complete genome) position: , mismatch: 7, identity: 0.774

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcaacatcaccaccacggcgaccagcgc	Protospacer
******************  ***. ** *.

61. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tcggtgagcgccagcaacagcgtcaacctggg	Protospacer
 **..**  **************** *** **

62. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP040453 (Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aaggcgaacatcaccaccagcggtgacatcaa	Protospacer
*. *  ****************  *******.

63. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_022533 (Plautia stali symbiont plasmid pPstS1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcaccaccacggcgaccagcgc	Protospacer
*******************  ***. ** *.

64. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_KY433363 (Proteus mirabilis strain R997 plasmid pR997, complete sequence) position: , mismatch: 7, identity: 0.781

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aactgctgcatcacctccagcgcgaacatcat	Protospacer
*.* ** .******* ********.******

65. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.781

agcggcaacatcaccaccagcgcggacatcag-	CRISPR spacer
atcggcagcatcaccaccagcccgg-cgtcgaa	Protospacer
* *****.************* *** *.**..

66. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

-agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aggccgccg-atcaccaccagcgcggtcagcag	Protospacer
 .** ** . **************** ** ***

67. spacer 3.10|1204770|31|NC_009656|CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 7, identity: 0.774

tcgtgatcaatgcccgccatgatttcgccgg	CRISPR spacer
cccagcacattgcccgccatgatttcgcctg	Protospacer
.*  *  ** ******************* *

68. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 7, identity: 0.781

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
ctgcacctgcgcaaggagttgatcgatcagtt	Protospacer
 *** ********* ***********.  *.*

69. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 7, identity: 0.781

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
ctgcacctgcgcaaggagttgatcgatcagtt	Protospacer
 *** ********* ***********.  *.*

70. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to MT310895 (Arthrobacter phage StevieBAY, complete genome) position: , mismatch: 7, identity: 0.781

-atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
cacac-cctgcacaacgagatgatcgacgtgac	Protospacer
 *..* *****.******* *********** .

71. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to KU647629 (Arthrobacter phage BarretLemon, complete genome) position: , mismatch: 7, identity: 0.781

-atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
cacac-cctgcacaacgagatgatcgacgtgac	Protospacer
 *..* *****.******* *********** .

72. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 7, identity: 0.781

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
acccgtccgcgcaacgcgttgctcgacgtgct	Protospacer
*. * .*.******** **** **********

73. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 7, identity: 0.781

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
acccgtccgcgcaacgcgttgctcgacgtgct	Protospacer
*. * .*.******** **** **********

74. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
agacgacggccagcatcagcatcaccgcacc	Protospacer
 ************** ****.***** .

75. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ggacgacggccagcagcagcggcacctggcc	Protospacer
 **************.***** ****.

76. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ggacgacggccagcagcagcggcacctggcc	Protospacer
 **************.***** ****.

77. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tcacgacggcgaacaacagcgtcaccgcaag	Protospacer
. ******** *.************* . .*

78. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg-----	CRISPR spacer
ggacgacgcccagcaacagcgtc-----tggtggac	Protospacer
 ******* **************     .**

79. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cgacgacggcccgcagcagcgtctgcttgtc	Protospacer
*********** ***.*******  *.*

80. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to MF063068 (Pseudomonas phage Noxifer, complete genome) position: , mismatch: 8, identity: 0.742

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
agcccacggctagcgacagcgtcaccctgca	Protospacer
 * * *****.***.*************  .

81. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.742

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aagagagggtcaccaccagtgcggacatcag	Protospacer
. *. *. .**********.***********

82. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
aagagagggtcaccaccagtgcggacatcag	Protospacer
. *. *. .**********.***********

83. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

84. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

85. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

86. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

87. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

88. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

89. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

90. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

91. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
acgacgacggccagtagcagcgtgagcacggc	Protospacer
**************.*.****** * * . *

92. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
atcacgacggcgaacaacagcgtcaccgcaag	Protospacer
*. ******** *.************* . .*

93. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

94. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

95. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

96. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

97. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

98. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

99. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

100. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

101. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ccaccgaaggccagcaaccgcgtcaccagcag	Protospacer
 *. *** ********** ********  *.*

102. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
ggcggcagcttcaccaccagcgcggcggccac	Protospacer
.******.* ***************  ..**

103. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
cgcggcgacatcaccaccagcgtggtgccgag	Protospacer
 *****.***************.**   . **

104. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
cccgtcgccatcaccagcggcgcggacatcac	Protospacer
  ** *. ******** *.************

105. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_AP022622 (Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_1) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcgccaccatcaccaccagcgccgccgacca	Protospacer
**** ** *************** * *. * .

106. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_021279 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcgccaccatcaccaccagcgccgccgacca	Protospacer
**** ** *************** * *. * .

107. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaccaccgccagcgccaagcacaa	Protospacer
**********.****.******* .*   **.

108. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NC_010683 (Ralstonia pickettii 12J plasmid pRPIC01, complete sequence) position: , mismatch: 8, identity: 0.75

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
gcgctcctgcgcaactacttgatcgactattt	Protospacer
..************* * *********   .*

109. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.75

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
gtcgacgtgcgcaacgacctgatcgacgtgat	Protospacer
.*   * ********** .*********** *

110. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 8, identity: 0.75

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
gtcgacgtgcgcaacgacctgatcgacgtgat	Protospacer
.*   * ********** .*********** *

111. spacer 3.1|1204530|31|NC_009656|PILER-CR,CRT matches to MN927226 (Escherichia phage vB_EcoS_XY2, complete genome) position: , mismatch: 9, identity: 0.71

cgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
ttacaacggcgagcaacagcgtcacttctgc	Protospacer
. **.***** **************....*

112. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP054608 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence) position: , mismatch: 9, identity: 0.71

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
tgtccaacatcaccatcagcgcggacgccgc	Protospacer
    ***********.**********..*.

113. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to AF151676 (Bacteriophage P-EibE ORF-191E (orf-191E), immunoglobulin-binding protein EibE (eibE), and ORF-156E (orf-156E) genes, complete cds) position: , mismatch: 9, identity: 0.71

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
atccaaacatcaccaccatctcggacatcgt	Protospacer
..   ************* * ********.

114. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
tgaaaaacagcaccaccagcgcggccataaa	Protospacer
  .. **** ************** *** *.

115. spacer 3.2|1204590|31|NC_009656|PILER-CR,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 9, identity: 0.71

gcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gcggcaacatcacccgcagcgcgtggttggc	Protospacer
**************  ******* .  * .

116. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tagacgacggccagcatcagcatcaccgcacc	Protospacer
  ************** ****.***** .

117. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tggacgacggccagcagcagcggcacctggcc	Protospacer
  **************.***** ****.

118. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tggacgacggccagcagcagcggcacctggcc	Protospacer
  **************.***** ****.

119. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
tcgacgacggcccgcagcagcgtctgcttgtc	Protospacer
 *********** ***.*******  *.*

120. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to MF063068 (Pseudomonas phage Noxifer, complete genome) position: , mismatch: 9, identity: 0.719

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
cagcccacggctagcgacagcgtcaccctgca	Protospacer
  * * *****.***.*************  .

121. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcacccgcagcgcgtggttggc	Protospacer
***************  ******* .  * .

122. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP019938 (Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcagcagcagcgccagaaagaa	Protospacer
************* ** ****** .. *  *.

123. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_LT703509 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 5) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaacaccagcagcgcagctggtat	Protospacer
********** ***** ******.* .. .*

124. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP015274 (Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaacaccagcagcgcagctggtat	Protospacer
********** ***** ******.* .. .*

125. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacatcacggccagcgcacgcgatgg	Protospacer
************** .*******. .*. ..*

126. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP019223 (Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_2, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaacaccagcagcgcagctggtat	Protospacer
********** ***** ******.* .. .*

127. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP045965 (Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_02, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaacaccagcagcgcagctggtat	Protospacer
********** ***** ******.* .. .*

128. spacer 3.9|1204769|32|NC_009656|CRISPRCasFinder matches to NC_022044 (Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence) position: , mismatch: 9, identity: 0.719

atcgtgatcaatgcccgccatgatttcgccgg	CRISPR spacer
atcgagatcaatgcccgccaagacgccacgcc	Protospacer
**** *************** **. .*.*

129. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to MG744354 (Lactobacillus phage Satyr, complete genome) position: , mismatch: 9, identity: 0.719

tctccg-----ccgttaccaacgccatgaaccacgcg	CRISPR spacer
-----gagaaccagttaccaacgccatgaacggcgcc	Protospacer
     *     * ****************** .***

130. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to KY381600 (Lactobacillus phage P2, complete genome) position: , mismatch: 9, identity: 0.719

tctccg-----ccgttaccaacgccatgaaccacgcg	CRISPR spacer
-----gagaaccagttaccaacgccatgaacggcgcc	Protospacer
     *     * ****************** .***

131. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 9, identity: 0.719

atgc-tcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
-cgcagccggcgcaacgagtggatcgacgccgg	Protospacer
 .**  ** *********** ********.

132. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 9, identity: 0.719

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
gagatcgtgcgcaacgagtggatcgaccggga	Protospacer
. * ** ************ *******  *

133. spacer 3.5|1204529|32|NC_009656|CRISPRCasFinder matches to MN927226 (Escherichia phage vB_EcoS_XY2, complete genome) position: , mismatch: 10, identity: 0.688

acgacgacggccagcaacagcgtcaccctcgg	CRISPR spacer
gttacaacggcgagcaacagcgtcacttctgc	Protospacer
.. **.***** **************....*

134. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to AF151676 (Bacteriophage P-EibE ORF-191E (orf-191E), immunoglobulin-binding protein EibE (eibE), and ORF-156E (orf-156E) genes, complete cds) position: , mismatch: 10, identity: 0.688

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
tatccaaacatcaccaccatctcggacatcgt	Protospacer
 ..   ************* * ********.

135. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
gtgaaaaacagcaccaccagcgcggccataaa	Protospacer
.  .. **** ************** *** *.

136. spacer 3.6|1204589|32|NC_009656|CRISPRCasFinder matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 10, identity: 0.688

agcggcaacatcaccaccagcgcggacatcag	CRISPR spacer
agcggcaacaccaccaacagcgcaccacctac	Protospacer
**********.***** ******.    ..*

137. spacer 4.3|2887083|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to MN586022 (Gordonia phage Chidiebere, complete genome) position: , mismatch: 10, identity: 0.688

tctccgccgttaccaacgccatgaaccacgcg	CRISPR spacer
ttgaggccgttaccaatgccgtgaaccaaagc	Protospacer
*.   ***********.***.******* .

138. spacer 4.4|2887143|32|NC_009656|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019949 (Methylocystis bryophila strain S285 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

atgctcctgcgcaacgagttgatcgacgtgct	CRISPR spacer
gcccgcctgcgcgacgagttgctcgacggaga	Protospacer
.. * *******.******** ****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19946 : 83269

Synechococcus_phage(20.0%)

tRNA,holin,transposase,integrase

attL 28073:28087|attR 83517:83531

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041025264.1\|19946_20891_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_011979050.1\|20943_21450_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.5e-18	41.0
WP_011979051.1\|21588_22614_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_011979052.1\|22748_23837_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	4.3e-23	36.0
WP_011979053.1\|23876_24434_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_011979054.1\|24444_25422_-	NADPH:quinone reductase	NA	NA	NA	NA
WP_011979055.1\|25613_26531_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_003156232.1\|26588_27413_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_011979056.1\|27524_28511_+	phospholipase	NA	NA	NA	NA
28073:28087	attL	NA	NA	NA	NA
WP_011979057.1\|28491_29778_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011979058.1\|29774_30377_+	hypothetical protein	NA	NA	NA	NA
WP_011979059.1\|30380_31934_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	9.2e-19	24.1
WP_011979060.1\|31938_32862_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003157288.1\|32879_34391_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_011979061.1\|34519_35419_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011979062.1\|35429_35807_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_011979063.1\|35785_36151_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_003111192.1\|36158_36782_-	response regulator transcription factor	NA	NA	NA	NA
WP_003157285.1\|36966_37773_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_011979064.1\|37769_38978_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_034080798.1\|39081_39969_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003157334.1\|40070_40286_+	dodecin family protein	NA	NA	NA	NA
WP_011979066.1\|40397_40625_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_011979067.1\|40917_42606_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_187152829.1\|53223_53757_+	hypothetical protein	NA	NA	NA	NA
WP_011979071.1\|53971_54355_+	hypothetical protein	NA	NA	NA	NA
WP_123809540.1\|54862_55075_+	hypothetical protein	NA	NA	NA	NA
WP_041025265.1\|55568_56261_+\|transposase	transposase	NA	NA	NA	NA
WP_071535402.1\|56383_56701_+	hypothetical protein	NA	NA	NA	NA
WP_003154008.1\|57147_58401_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_011979072.1\|58883_59570_+	CsgG/HfaB family protein	NA	NA	NA	NA
WP_011979073.1\|59600_59954_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_003154014.1\|59950_60616_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_003154016.1\|60630_61047_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171941870.1\|61422_62937_-	hypothetical protein	NA	NA	NA	NA
WP_011979075.1\|63618_64047_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011979076.1\|64299_64848_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	1.8e-33	41.0
WP_011979077.1\|64886_65393_-	DUF1993 family protein	NA	NA	NA	NA
WP_011979078.1\|65458_66379_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011979079.1\|66486_67374_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011979080.1\|67436_68138_+	DsbA family protein	NA	NA	NA	NA
WP_003118563.1\|68221_68677_+	OsmC family protein	NA	NA	NA	NA
WP_003157864.1\|68787_69021_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003157863.1\|69033_69471_-	hypothetical protein	NA	NA	NA	NA
WP_003157862.1\|69527_69944_-	hypothetical protein	NA	NA	NA	NA
WP_049792063.1\|70035_71163_+	aminopeptidase	NA	NA	NA	NA
WP_011979082.1\|71172_72159_-	hypothetical protein	NA	NA	NA	NA
WP_011979083.1\|72191_72857_-	HAD family hydrolase	NA	NA	NA	NA
WP_011979084.1\|72849_73392_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_011979085.1\|73469_75515_+	oligopeptidase A	A0A1V0SD92	Indivirus	1.7e-33	21.3
WP_011979086.1\|75511_75787_+	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_003152715.1\|75875_76139_+	hypothetical protein	NA	NA	NA	NA
WP_011979087.1\|76185_78540_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003152713.1\|78536_80639_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023083569.1\|80631_81576_+	hypothetical protein	NA	NA	NA	NA
WP_123789211.1\|81629_81959_+	hypothetical protein	NA	NA	NA	NA
WP_169311241.1\|81988_83269_+\|integrase	site-specific integrase	NA	NA	NA	NA
83517:83531	attR	NA	NA	NA	NA

DBSCAN-SWA_2

98023 : 139866

Erysipelothrix_phage(25.0%)

transposase,integrase

attL 94211:94238|attR 137376:137403

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
94211:94238	attL	NA	NA	NA	NA
WP_011914409.1\|98023_100189_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_079262147.1\|100185_101205_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_008567175.1\|101757_102174_-	hypothetical protein	NA	NA	NA	NA
WP_008567178.1\|102192_103875_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	5.3e-36	26.4
WP_008567179.1\|103907_104342_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_008567180.1\|104354_104630_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_008567181.1\|104643_104994_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_008567182.1\|105065_105476_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_008567186.1\|106039_106393_-	hypothetical protein	NA	NA	NA	NA
WP_019486123.1\|106464_107547_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041025267.1\|108298_109885_-	hypothetical protein	NA	NA	NA	NA
WP_010794485.1\|109925_111083_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011979105.1\|111180_111309_-	ultraviolet light resistance protein B	A0A218MNF2	uncultured_virus	6.0e-09	75.8
WP_034065824.1\|111308_111740_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.5e-24	44.7
WP_003131969.1\|111875_112310_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA
WP_003131974.1\|112381_112732_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_003131987.1\|112744_113020_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003158917.1\|113091_114777_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-40	29.3
WP_000995360.1\|114794_115160_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_003132004.1\|115156_115393_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_011979107.1\|115389_116391_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_003150544.1\|116394_117324_-	recombinase family protein	E5FFF9	Burkholderia_phage	1.9e-40	46.9
WP_003089107.1\|117525_117765_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_003150546.1\|117764_118175_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_003299771.1\|118178_121172_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003089113.1\|121184_121397_-	hypothetical protein	NA	NA	NA	NA
WP_003150552.1\|121404_121680_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089115.1\|121692_122043_-	mercury transporter MerT	NA	NA	NA	NA
WP_003089120.1\|122117_122516_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003464995.1\|122818_123664_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003464991.1\|123693_124212_-	DUF417 family protein	NA	NA	NA	NA
WP_004423958.1\|124954_126226_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005005993.1\|126587_126962_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_003464988.1\|127822_128089_-	hypothetical protein	NA	NA	NA	NA
WP_003464986.1\|128258_128540_-	DUF427 domain-containing protein	NA	NA	NA	NA
WP_005005995.1\|128607_128880_-	glutaredoxin 3	A0A1X7BZ88	Faustovirus	1.3e-08	42.6
WP_002118292.1\|129333_130080_-	ferredoxin reductase	NA	NA	NA	NA
WP_003464980.1\|130072_130675_-	sulfite oxidase-like oxidoreductase	NA	NA	NA	NA
WP_003464979.1\|131142_131613_+	hypothetical protein	NA	NA	NA	NA
WP_003464978.1\|131938_132232_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_005006001.1\|132290_132722_-	heme-binding protein	NA	NA	NA	NA
WP_002118279.1\|132794_133808_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_016487060.1\|133883_134051_+	hypothetical protein	NA	NA	NA	NA
WP_011979111.1\|134255_135224_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_003464969.1\|135220_135925_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_003464967.1\|136065_136605_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_003464965.1\|136606_137050_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011911830.1\|137570_138374_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	5.2e-34	36.2
137376:137403	attR	NA	NA	NA	NA
WP_116826081.1\|138366_139866_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

686459 : 806560

129

Pseudomonas_phage(57.89%)

plate,head,holin,terminase,tail,portal,lysis,capsid,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012074122.1\|686459_687581_-	Fic family protein	A0A1V0E025	Clostridioides_phage	3.7e-09	26.7
WP_012074123.1\|687842_687992_-	hypothetical protein	NA	NA	NA	NA
WP_128571712.1\|688551_689319_+	hypothetical protein	NA	NA	NA	NA
WP_012074125.1\|689347_690319_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	3.7e-167	92.0
WP_012074126.1\|690303_691002_-	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	1.9e-40	37.8
WP_012074127.1\|691001_691541_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	8.0e-95	100.0
WP_012074128.1\|691537_692458_-	hypothetical protein	A5X9J6	Aeromonas_virus	1.3e-17	34.5
WP_012074129.1\|692454_693165_-	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	4.7e-135	100.0
WP_012074130.1\|693178_695143_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	0.0e+00	99.8
WP_012074131.1\|695154_695679_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	5.7e-98	100.0
WP_012074132.1\|695671_696844_-\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	1.5e-223	100.0
WP_012074133.1\|696840_697161_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	4.2e-51	100.0
WP_012074134.1\|697157_699212_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	0.0e+00	100.0
WP_012074135.1\|699226_699367_-	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	2.2e-20	100.0
WP_012074136.1\|699390_699678_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	2.0e-44	100.0
WP_012074137.1\|699674_700160_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	4.2e-79	100.0
WP_012074138.1\|700156_700618_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	1.4e-79	100.0
WP_025297585.1\|700614_700920_-	hypothetical protein	A0A0H5AUD7	Pseudomonas_phage	7.6e-10	40.4
WP_012074140.1\|700919_701129_-	TraR/DksA family transcriptional regulator	A0A0U4IIN4	Pseudomonas_phage	5.2e-34	100.0
WP_029771257.1\|701128_701560_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	1.9e-75	100.0
WP_012074142.1\|701581_702697_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	5.0e-208	100.0
WP_012074143.1\|702708_703374_-	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	2.7e-121	100.0
WP_012074144.1\|703366_703804_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	8.5e-79	100.0
WP_012074145.1\|703805_704267_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	2.0e-78	96.7
WP_012074146.1\|704364_705102_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	4.1e-118	90.2
WP_012074147.1\|705098_706121_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.1e-193	100.0
WP_034019549.1\|706120_707074_-\|capsid	GPO family capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	6.0e-146	99.7
WP_012074149.1\|707231_709280_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	0.0e+00	99.4
WP_034019547.1\|709191_710046_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	7.8e-129	97.4
WP_023122741.1\|710091_710352_+	ogr/Delta-like zinc finger family protein	U3PB63	Vibrio_phage	2.1e-13	47.6
WP_012074151.1\|710327_710537_-	hypothetical protein	NA	NA	NA	NA
WP_012074152.1\|710895_711177_-	hypothetical protein	A0A0U4B0R1	Pseudomonas_phage	1.7e-32	75.3
WP_012074153.1\|711173_711404_-	hypothetical protein	NA	NA	NA	NA
WP_012074154.1\|711400_711616_-	hypothetical protein	NA	NA	NA	NA
WP_034019545.1\|711602_712016_-	hypothetical protein	NA	NA	NA	NA
WP_012074155.1\|712083_712440_-	hypothetical protein	A0A0U4JXA4	Pseudomonas_phage	6.3e-32	56.4
WP_012074156.1\|712455_712857_-	hypothetical protein	A0A0U4IIM6	Pseudomonas_phage	3.4e-50	72.9
WP_012074157.1\|712828_713029_-	hypothetical protein	NA	NA	NA	NA
WP_012074158.1\|713459_716153_-	toprim domain-containing protein	A0A0U3TH43	Pseudomonas_phage	4.0e-304	56.1
WP_012074159.1\|716163_716406_-	hypothetical protein	A0A0U4KLD7	Pseudomonas_phage	4.0e-14	56.2
WP_012074160.1\|716499_716736_+	helix-turn-helix transcriptional regulator	A0A0U4ISL7	Pseudomonas_phage	1.0e-17	57.7
WP_012074162.1\|717960_721698_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	1.6e-13	36.2
WP_012074163.1\|721804_723658_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_012074165.1\|723737_725729_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-72	37.0
WP_003085042.1\|725811_726261_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|726328_726544_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_012074166.1\|726744_727770_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.8e-108	58.1
WP_012074167.1\|727848_728418_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003149641.1\|728501_728855_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003149639.1\|728845_729388_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_012074168.1\|729360_730593_-	multifunctional CCA addition/repair protein	A0A1V0E714	Klebsiella_phage	5.3e-78	43.0
WP_012074169.1\|730635_731142_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_012074170.1\|731236_732790_-	SpoVR family protein	NA	NA	NA	NA
WP_012074171.1\|732786_734058_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_012074172.1\|734158_736081_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003149627.1\|736361_736694_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_012074174.1\|736737_737589_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	9.6e-10	30.9
WP_012074175.1\|737588_737969_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_012074176.1\|738005_738812_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_012074177.1\|738927_739914_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_012074178.1\|739910_741203_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003152145.1\|741183_743970_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_012074180.1\|744096_745113_+	phosphotransferase	NA	NA	NA	NA
WP_012074181.1\|745109_745784_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_012074182.1\|745785_746544_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012074183.1\|746544_747594_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_012074184.1\|747745_750145_+	PAS domain S-box protein	NA	NA	NA	NA
WP_012074185.1\|750187_750820_+	response regulator transcription factor	NA	NA	NA	NA
WP_012074186.1\|750948_751983_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012074187.1\|752216_753326_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-27	34.4
WP_012074188.1\|753381_754428_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012074189.1\|754539_755787_+	ABC transporter permease	NA	NA	NA	NA
WP_003152154.1\|755863_756694_+	ABC transporter permease	NA	NA	NA	NA
WP_012074190.1\|756817_757492_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_012074191.1\|757491_758310_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_012074192.1\|758382_759861_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003152158.1\|760145_760460_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_003152159.1\|760560_761331_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	3.0e-71	58.5
WP_003152160.1\|761788_761989_+	TraR/DksA C4-type zinc finger protein	Q9ZXI6	Pseudomonas_virus	1.0e-07	48.4
WP_003152161.1\|762034_762394_+	hypothetical protein	NA	NA	NA	NA
WP_003152162.1\|762848_763202_+\|holin	holin	B5TK61	Pseudomonas_phage	3.0e-26	51.7
WP_003152163.1\|763223_763739_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	6.8e-35	46.3
WP_012074193.1\|763735_764293_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.1e-46	54.3
WP_004366794.1\|764444_764771_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.7e-29	58.3
WP_004366796.1\|764767_765655_+\|plate	baseplate J/gp47 family protein	A0A1S6KZY6	Salmonella_phage	2.9e-86	58.0
WP_004366797.1\|765647_766262_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	9.2e-63	59.4
WP_033999491.1\|767455_767890_+	hypothetical protein	NA	NA	NA	NA
WP_004366801.1\|767938_769099_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.7e-174	78.2
WP_004366803.1\|769111_769615_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	6.1e-65	71.6
WP_004366805.1\|769629_769974_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012074196.1\|770146_772411_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_012074197.1\|772420_773290_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.2e-76	51.9
WP_004366813.1\|773264_773471_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.6e-17	61.2
WP_004366815.1\|773528_774524_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.1e-108	58.2
WP_012074198.1\|774548_775178_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.9e-85	77.5
WP_012074199.1\|775174_775537_+	hypothetical protein	H2BDA0	Pseudomonas_phage	8.7e-13	45.5
WP_012074200.1\|775533_775791_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	1.5e-19	67.1
WP_012074202.1\|776110_776605_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.1e-45	57.1
WP_003150143.1\|776616_776964_+\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_003150141.1\|776993_777248_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	8.3e-10	38.4
WP_012074203.1\|777294_779133_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	4.4e-28	35.8
WP_012074204.1\|779125_779467_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	5.0e-18	40.9
WP_012074205.1\|779474_780170_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	5.7e-69	49.8
WP_003150138.1\|780172_780943_+	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	5.0e-82	56.0
WP_003117974.1\|780997_781600_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	6.5e-53	57.3
WP_012074206.1\|781658_785324_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.0
WP_126593864.1\|785613_786318_+	hypothetical protein	NA	NA	NA	NA
WP_003150136.1\|786572_787622_+	hypothetical protein	A0A1B0YZW2	Pseudomonas_phage	1.1e-95	68.2
WP_041025284.1\|787621_787924_+	hypothetical protein	I6PBW9	Pseudomonas_phage	1.1e-40	81.0
WP_012074208.1\|787920_788145_+	hypothetical protein	A0A0S3UFY6	Pseudomonas_phage	2.2e-27	83.8
WP_003150133.1\|788550_789156_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.9e-73	64.7
WP_012074210.1\|789157_790207_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.4e-111	57.8
WP_012074211.1\|790203_791040_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.6e-71	56.9
WP_003085219.1\|792016_792439_+	OsmC family protein	NA	NA	NA	NA
WP_003150131.1\|792758_793553_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_012074213.1\|793617_794265_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_012074214.1\|794364_794703_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003150128.1\|794778_796260_+	AAA family ATPase	U5XJW0	Phormidium_phage	5.1e-67	33.9
WP_012074215.1\|796271_797072_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012074216.1\|797132_798200_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_012074217.1\|798321_799290_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003150125.1\|799305_799728_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_012074218.1\|800017_801052_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003150123.1\|801051_801771_+	hypothetical protein	NA	NA	NA	NA
WP_074197375.1\|801771_802194_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|802271_802622_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_034000208.1\|802671_803763_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_079262152.1\|803765_805076_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	1.0e-18	45.0
WP_012074222.1\|805360_806560_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_4

1540197 : 1549220

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074197311.1\|1540197_1540833_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.0e-40	51.7
WP_023442978.1\|1540878_1541772_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_034080333.1\|1541872_1542877_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-35	37.3
WP_003092272.1\|1543302_1543626_-	ferredoxin family protein	NA	NA	NA	NA
WP_003152354.1\|1543692_1546260_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_012074710.1\|1546385_1547393_-	TolB family protein	NA	NA	NA	NA
WP_003152358.1\|1547539_1548046_+	CinA family protein	B5TK85	Pseudomonas_phage	9.9e-55	73.4
WP_003092260.1\|1548179_1549220_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_5

2408131 : 2468596

Pseudomonas_phage(70.15%)

integrase,terminase,transposase,tail,tRNA

attL 2407655:2407670|attR 2429455:2429470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2407655:2407670	attL	NA	NA	NA	NA
WP_003152610.1\|2408131_2409316_+	SpoIIE family protein phosphatase	Q56AR1	Bacillus_thuringiensis_phage	1.9e-08	31.9
WP_003152612.1\|2409312_2409795_+	STAS domain-containing protein	NA	NA	NA	NA
WP_012075288.1\|2409878_2410802_-	transaldolase	A0A0E3FGE1	Synechococcus_phage	3.2e-11	29.1
WP_012075289.1\|2410880_2411885_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_012075290.1\|2411988_2413095_+\|integrase	tyrosine-type recombinase/integrase	L7TP61	Pseudomonas_virus	1.0e-213	99.5
WP_012075291.1\|2413104_2413389_-	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	3.0e-45	98.9
WP_025991793.1\|2413463_2413850_-	hypothetical protein	A0A2K8HZQ6	Pseudomonas_phage	2.1e-65	100.0
WP_187152835.1\|2413953_2415135_-	hypothetical protein	D6RRR7	Pseudomonas_phage	5.0e-41	91.9
WP_012075296.1\|2415232_2415739_-	hypothetical protein	L7TI83	Pseudomonas_virus	7.8e-84	93.5
WP_012075297.1\|2415735_2416101_-	hypothetical protein	H2BD40	Pseudomonas_phage	1.3e-59	93.7
WP_012075298.1\|2416097_2416670_-	hypothetical protein	H2BD41	Pseudomonas_phage	5.1e-100	92.6
WP_041025316.1\|2416666_2417305_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	3.4e-92	81.7
WP_012075300.1\|2417650_2418100_-	hypothetical protein	A0A2K8HVL6	Pseudomonas_phage	2.6e-75	97.2
WP_012075301.1\|2418096_2420007_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.3e-296	98.6
WP_012075302.1\|2420132_2421044_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_012075303.1\|2421084_2421942_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.0e-160	97.2
WP_012075304.1\|2422082_2423828_-	AAA family ATPase	H2BD46	Pseudomonas_phage	2.0e-243	78.3
WP_012075305.1\|2423831_2424596_-	hypothetical protein	J7I0T4	Pseudomonas_phage	2.3e-103	67.4
WP_003116739.1\|2424607_2424808_-	hypothetical protein	H2BD48	Pseudomonas_phage	4.3e-30	100.0
WP_012075306.1\|2424814_2425609_-	hypothetical protein	H2BD49	Pseudomonas_phage	1.4e-74	56.0
WP_041025317.1\|2425605_2426097_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	7.9e-33	45.9
WP_012075308.1\|2426105_2426909_-	PD-(D/E)XK nuclease family protein	H2BD50	Pseudomonas_phage	2.2e-149	96.3
WP_003116743.1\|2426916_2427054_-	hypothetical protein	J7I432	Pseudomonas_phage	8.3e-17	100.0
WP_041025318.1\|2427050_2427374_-	hypothetical protein	NA	NA	NA	NA
WP_012075309.1\|2427370_2427550_-	hypothetical protein	H2BD52	Pseudomonas_phage	3.2e-24	98.3
WP_003099037.1\|2427546_2427768_-	hypothetical protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
WP_012075310.1\|2427751_2427904_-	hypothetical protein	J7HXJ0	Pseudomonas_phage	2.6e-11	100.0
WP_012075311.1\|2428398_2428770_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	8.0e-62	97.6
WP_012075312.1\|2428804_2429017_-	hypothetical protein	L7TKR9	Pseudomonas_virus	2.0e-33	97.1
WP_086008389.1\|2429245_2430407_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.3e-85	53.2
2429455:2429470	attR	NA	NA	NA	NA
WP_041025320.1\|2431290_2431623_+	DUF1654 domain-containing protein	H2BD60	Pseudomonas_phage	1.1e-46	89.8
WP_079262168.1\|2432062_2433052_-	hypothetical protein	I6NRL3	Burkholderia_virus	9.0e-28	31.2
WP_012075316.1\|2433249_2433900_-	BRCT domain-containing protein	A0A0U4J8W4	Pseudomonas_phage	1.2e-121	97.7
WP_049792076.1\|2434033_2434606_-	LexA family transcriptional regulator	H2BD63	Pseudomonas_phage	4.8e-82	88.3
WP_003451709.1\|2434983_2435202_+	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	2.9e-19	64.7
WP_012075318.1\|2435233_2435806_+	hypothetical protein	H2BD67	Pseudomonas_phage	1.8e-100	97.9
WP_012075319.1\|2435808_2436771_+	hypothetical protein	A0A2H4JCW9	uncultured_Caudovirales_phage	1.6e-13	47.5
WP_012075320.1\|2436898_2437312_+	hypothetical protein	NA	NA	NA	NA
WP_012075321.1\|2437304_2437754_+	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	8.1e-77	97.3
WP_012075322.1\|2437782_2438652_+	hypothetical protein	J7HXH6	Pseudomonas_phage	1.1e-151	90.7
WP_012075324.1\|2439639_2439948_+	hypothetical protein	A0A125RNL3	Pseudomonas_phage	1.0e-17	55.0
WP_012075325.1\|2439950_2440247_+	hypothetical protein	A0A125RNL4	Pseudomonas_phage	7.1e-21	58.4
WP_138009451.1\|2440318_2440894_+	hypothetical protein	NA	NA	NA	NA
WP_012075326.1\|2441017_2441617_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	2.4e-44	57.1
WP_041025321.1\|2441600_2442896_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.1e-145	59.0
WP_003451684.1\|2442898_2444254_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	4.3e-97	46.0
WP_012075329.1\|2444250_2445330_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	5.7e-201	98.3
WP_003103389.1\|2445458_2446202_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	2.2e-87	75.5
WP_012075331.1\|2446211_2447183_+	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	5.4e-110	64.7
WP_012075332.1\|2447223_2447709_+	hypothetical protein	NA	NA	NA	NA
WP_012075333.1\|2447692_2448157_+	hypothetical protein	H9EB35	Vibrio_phage	5.2e-10	36.4
WP_041025322.1\|2448156_2448546_+	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	1.4e-32	54.3
WP_012075335.1\|2448549_2449224_+	hypothetical protein	A0A0S2SY81	Pseudomonas_phage	1.0e-115	96.0
WP_012075336.1\|2449220_2449631_+	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	1.9e-24	43.4
WP_012075337.1\|2449698_2450352_+\|tail	phage tail protein	A0A2H4IZV5	uncultured_Caudovirales_phage	7.7e-60	52.8
WP_003103406.1\|2450361_2450742_+\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	7.0e-29	51.2
WP_012075338.1\|2450804_2451068_+	DUF1799 domain-containing protein	A0A2R3UAE2	Siphoviridae_environmental_samples	1.4e-15	46.0
WP_012075339.1\|2451064_2454256_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	4.3e-156	41.2
WP_012075340.1\|2454261_2454600_+\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	3.1e-60	99.1
WP_012075341.1\|2454596_2455346_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	6.2e-146	98.0
WP_012075342.1\|2455348_2456143_+	C40 family peptidase	A0A0S2SY75	Pseudomonas_phage	5.9e-147	98.0
WP_041025323.1\|2456546_2456861_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_012075345.1\|2456957_2457104_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_138009469.1\|2457177_2458044_+	phage antirepressor N-terminal domain-containing protein	G9L6D8	Escherichia_phage	3.5e-36	42.9
WP_071536558.1\|2458191_2458596_+	hypothetical protein	NA	NA	NA	NA
WP_041025324.1\|2458646_2459258_+\|tail	tail assembly protein	A0A0S2SYS2	Pseudomonas_phage	2.2e-85	81.8
WP_138009452.1\|2459254_2459779_-	hypothetical protein	NA	NA	NA	NA
WP_012075348.1\|2459903_2463470_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	86.8
WP_004349473.1\|2463466_2463751_+	hypothetical protein	NA	NA	NA	NA
WP_071536557.1\|2463747_2464413_+	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	5.8e-55	44.4
WP_041025325.1\|2464431_2465223_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	8.0e-136	95.4
WP_012075349.1\|2465222_2465525_+	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	5.7e-50	99.0
WP_012075350.1\|2465521_2465749_+	hypothetical protein	A0A0S2SY98	Pseudomonas_phage	6.8e-32	94.7
WP_012075351.1\|2465815_2466445_+	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	5.6e-108	92.8
WP_012075352.1\|2466441_2466810_+	hypothetical protein	H2BDD6	Pseudomonas_virus	2.1e-30	62.3
WP_041025326.1\|2466806_2467070_+	hypothetical protein	H2BDD7	Pseudomonas_virus	5.0e-34	86.0
WP_012075354.1\|2467105_2467369_+	hypothetical protein	J7I447	Pseudomonas_phage	5.0e-42	92.0
WP_012075355.1\|2467350_2468043_-	SOS response-associated peptidase family protein	A0A2K8I970	Pseudomonas_phage	4.9e-121	90.0
WP_012075356.1\|2468083_2468596_-	hypothetical protein	A0A0U1VYP0	Pseudomonas_phage	1.0e-83	88.2

DBSCAN-SWA_6

2619448 : 2626340

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012075461.1\|2619448_2620729_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	44.9
WP_012075462.1\|2620730_2622128_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_012075463.1\|2622132_2623107_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_012075464.1\|2623192_2624176_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.2e-142	74.3
WP_003153616.1\|2624172_2624508_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-38	68.5
WP_003153615.1\|2624504_2624810_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_012075465.1\|2624809_2625169_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.2e-33	60.8
WP_012075466.1\|2625165_2625561_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.5e-45	69.8
WP_003153609.1\|2625671_2626340_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.3e-90	81.6

DBSCAN-SWA_7

2853820 : 2945706

Tupanvirus(27.27%)

protease,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012075627.1\|2853820_2855818_+\|protease	protease modulator HflK	NA	NA	NA	NA
WP_012075628.1\|2855829_2856849_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_012075629.1\|2856845_2857886_+\|protease	protease modulator HflK	NA	NA	NA	NA
WP_012075630.1\|2858033_2858468_+	hypothetical protein	NA	NA	NA	NA
WP_012075631.1\|2858496_2860479_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-45	29.9
WP_170323393.1\|2860565_2861021_+	DUF4946 domain-containing protein	NA	NA	NA	NA
WP_003156891.1\|2861173_2861443_-	hypothetical protein	NA	NA	NA	NA
WP_003156892.1\|2861559_2862474_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012075633.1\|2862874_2865049_+	FUSC family protein	NA	NA	NA	NA
WP_012075634.1\|2865038_2865248_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_012075635.1\|2865244_2866249_+	HlyD family secretion protein	NA	NA	NA	NA
WP_003156704.1\|2866292_2866538_-	hypothetical protein	NA	NA	NA	NA
WP_012075636.1\|2866798_2867713_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_012075637.1\|2867868_2868882_+	acetyltransferase	NA	NA	NA	NA
WP_003156700.1\|2868960_2869524_-	RNA polymerase factor sigma-70	NA	NA	NA	NA
WP_012075638.1\|2870157_2870922_+	thioesterase	NA	NA	NA	NA
WP_012075639.1\|2871013_2884042_+	pyoverdine non-ribosomal peptide synthase/polyketide synthase PvdL	A0A2K9KZV5	Tupanvirus	5.6e-93	23.9
WP_171941869.1\|2884174_2884543_-	hypothetical protein	NA	NA	NA	NA
WP_012075641.1\|2884551_2884743_-	hypothetical protein	NA	NA	NA	NA
WP_041025342.1\|2885206_2885935_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.9e-51	42.3
WP_003156532.1\|2886026_2886539_-	Bro-N domain-containing protein	G8I4Q8	Mycobacterium_phage	2.0e-07	31.4
WP_086008390.1\|2887237_2888400_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.8e-84	53.2
WP_012075645.1\|2888737_2888911_-	hypothetical protein	NA	NA	NA	NA
WP_012075646.1\|2889826_2889994_+	hypothetical protein	NA	NA	NA	NA
WP_012075647.1\|2890065_2890986_-	transporter	NA	NA	NA	NA
WP_041025343.1\|2891020_2892439_-	OprD family porin	NA	NA	NA	NA
WP_003089647.1\|2892517_2893198_-	hydrolase	NA	NA	NA	NA
WP_012075649.1\|2893285_2894146_-	pirin family protein	NA	NA	NA	NA
WP_012075650.1\|2894246_2895215_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012075651.1\|2895218_2896904_-	alpha,alpha-trehalase TreA	NA	NA	NA	NA
WP_003155282.1\|2897255_2897681_+	hypothetical protein	NA	NA	NA	NA
WP_012075652.1\|2897673_2898993_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_012075653.1\|2899177_2900587_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	5.8e-20	24.1
WP_003089636.1\|2900664_2900883_+	MbtH family protein	NA	NA	NA	NA
WP_012075654.1\|2900883_2901648_+	thioesterase	NA	NA	NA	NA
WP_012075655.1\|2901746_2902664_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012075656.1\|2902660_2903566_-	metal ABC transporter permease	NA	NA	NA	NA
WP_012075657.1\|2903562_2904318_-	metal ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-11	28.4
WP_012075658.1\|2904314_2905259_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012075659.1\|2905291_2905846_-	hypothetical protein	NA	NA	NA	NA
WP_012075660.1\|2905842_2906172_-	hypothetical protein	NA	NA	NA	NA
WP_003089621.1\|2906168_2906708_-	hypothetical protein	NA	NA	NA	NA
WP_012075661.1\|2906704_2907916_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_012075663.1\|2908233_2920644_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.0e-96	25.8
WP_161440564.1\|2920650_2935620_+	non-ribosomal peptide synthase/polyketide synthase	A0A2K9L3I8	Tupanvirus	1.7e-154	26.8
WP_012075665.1\|2935668_2936634_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012075666.1\|2936734_2939161_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_003148545.1\|2939333_2940986_-	cyclic peptide export ABC transporter	A0A1V0SD74	Indivirus	7.1e-09	29.4
WP_003148547.1\|2941278_2942106_+	pyoverdine synthetase F	NA	NA	NA	NA
WP_012075667.1\|2942173_2943025_-	formylglycine-generating enzyme family protein	A0A7H6	Microcystis_virus	1.4e-40	41.8
WP_003148549.1\|2943053_2944337_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_012075668.1\|2944359_2945706_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA

DBSCAN-SWA_8

3138805 : 3176454

Faustovirus(20.0%)

transposase,integrase

attL 3155257:3155272|attR 3173201:3173216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012075806.1\|3138805_3140650_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_161440562.1\|3140661_3141516_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_071535376.1\|3141524_3142682_+	TniQ family protein	NA	NA	NA	NA
WP_012075808.1\|3142655_3143531_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012075809.1\|3143691_3144792_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012075810.1\|3144879_3145755_+	DNA-binding protein	NA	NA	NA	NA
WP_171941853.1\|3146457_3148311_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_012075812.1\|3148300_3149419_+	hypothetical protein	NA	NA	NA	NA
WP_012075813.1\|3149411_3151307_+	hypothetical protein	NA	NA	NA	NA
WP_033986780.1\|3151312_3152359_+	hypothetical protein	NA	NA	NA	NA
WP_071535374.1\|3152387_3153455_+	hypothetical protein	NA	NA	NA	NA
WP_012075817.1\|3153456_3153969_-	NADAR family protein	A0A0H3TLU0	Faustovirus	2.0e-15	38.2
WP_012075818.1\|3154245_3154455_+	hypothetical protein	NA	NA	NA	NA
WP_012075819.1\|3154523_3154925_+	hypothetical protein	NA	NA	NA	NA
WP_012075820.1\|3154921_3155230_+	hypothetical protein	NA	NA	NA	NA
3155257:3155272	attL	NA	NA	NA	NA
WP_023435641.1\|3155317_3155509_+	hypothetical protein	NA	NA	NA	NA
WP_012075821.1\|3155960_3158651_+	AAA family ATPase	NA	NA	NA	NA
WP_012075822.1\|3158844_3162537_-	hypothetical protein	NA	NA	NA	NA
WP_010794183.1\|3162732_3163035_+	hypothetical protein	NA	NA	NA	NA
WP_010794184.1\|3163327_3164329_-	DNA-binding protein	NA	NA	NA	NA
WP_003111050.1\|3164509_3165481_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003111049.1\|3165510_3166254_+	phage Gp37/Gp68 family protein	A0A2P1A0W3	Gordonia_phage	1.8e-60	45.5
WP_003111048.1\|3166275_3167592_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_012075823.1\|3168003_3169413_+	homospermidine synthase	B2ZXX8	Ralstonia_phage	1.2e-94	39.1
WP_003111046.1\|3169428_3170157_+	hypothetical protein	NA	NA	NA	NA
WP_003120172.1\|3170153_3171059_+	EamA family transporter	NA	NA	NA	NA
WP_003120171.1\|3171066_3171531_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003111043.1\|3171710_3172073_-	hypothetical protein	NA	NA	NA	NA
WP_003111042.1\|3172069_3175084_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.7e-72	24.8
3173201:3173216	attR	NA	NA	NA	NA
WP_010794468.1\|3175227_3176454_-\|transposase	IS256-like element ISPa1328 family transposase	A0A218MNI5	uncultured_virus	8.0e-50	47.1

DBSCAN-SWA_9

5156125 : 5241655

Pseudomonas_phage(72.34%)

plate,integrase,head,terminase,tail,portal,lysis,capsid,tRNA,protease

attL 5155456:5155475|attR 5205363:5205382

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5155456:5155475	attL	NA	NA	NA	NA
WP_003094153.1\|5156125_5156533_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.7e-33	63.7
WP_003150418.1\|5156544_5157162_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_003150420.1\|5157246_5158029_-	cytochrome c1	NA	NA	NA	NA
WP_012077202.1\|5158028_5159240_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_003100631.1\|5159239_5159833_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_003150422.1\|5160083_5160476_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_003150423.1\|5160490_5160919_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_012077203.1\|5161164_5162202_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_003120905.1\|5162232_5163378_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_074197390.1\|5163631_5164531_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_003150429.1\|5164643_5165606_+	hypothetical protein	NA	NA	NA	NA
WP_003150430.1\|5165670_5166765_-	cell division protein ZapE	NA	NA	NA	NA
WP_012077204.1\|5166857_5168204_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003150434.1\|5168271_5168901_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003094304.1\|5169045_5169492_+	YhcB family protein	NA	NA	NA	NA
WP_012077205.1\|5169566_5171465_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.8e-32	26.2
WP_003094311.1\|5171476_5172394_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_003150436.1\|5172737_5173853_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_003150438.1\|5173827_5174586_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_012077206.1\|5174702_5175872_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	3.2e-08	28.9
WP_012077207.1\|5175918_5176974_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.1e-21	26.3
WP_012077208.1\|5176976_5178299_-	histidinol dehydrogenase	NA	NA	NA	NA
WP_012077209.1\|5178425_5179061_-	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_003155078.1\|5179077_5180343_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003094334.1\|5180365_5180605_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_003155080.1\|5180721_5181030_-	anti-sigma factor antagonist	NA	NA	NA	NA
WP_003155083.1\|5181026_5181674_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_003094339.1\|5181685_5182159_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_003155085.1\|5182159_5182957_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_003094343.1\|5182956_5183766_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.5e-24	33.0
WP_170870649.1\|5184175_5185156_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.6e-35	32.2
WP_012077212.1\|5185155_5185695_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	4.5e-29	51.5
WP_012077213.1\|5185703_5186276_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_012077214.1\|5186262_5186790_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_012077215.1\|5186789_5187515_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-22	26.5
WP_003155095.1\|5187741_5189235_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003155096.1\|5189312_5189621_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_003155098.1\|5189634_5190099_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003155100.1\|5190100_5190961_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	5.9e-07	31.6
WP_003155102.1\|5190990_5191263_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_012077216.1\|5191293_5192409_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4IBS1	Pseudomonas_phage	2.3e-120	60.2
WP_012077217.1\|5192413_5192650_-	helix-turn-helix domain-containing protein	A0A0U4ISL7	Pseudomonas_phage	1.7e-17	57.7
WP_012077218.1\|5192744_5192975_+	hypothetical protein	A0A0U4KLD7	Pseudomonas_phage	2.8e-25	84.2
WP_012077219.1\|5192985_5195679_+	toprim domain-containing protein	A0A0U3TH43	Pseudomonas_phage	2.0e-303	56.0
WP_012074157.1\|5196109_5196310_+	hypothetical protein	NA	NA	NA	NA
WP_012077220.1\|5196281_5196683_+	hypothetical protein	A0A0U4IIM6	Pseudomonas_phage	7.6e-50	72.2
WP_012074155.1\|5196698_5197055_+	hypothetical protein	A0A0U4JXA4	Pseudomonas_phage	6.3e-32	56.4
WP_025297579.1\|5197122_5197536_+	hypothetical protein	NA	NA	NA	NA
WP_012074154.1\|5197522_5197738_+	hypothetical protein	NA	NA	NA	NA
WP_012074153.1\|5197734_5197965_+	hypothetical protein	NA	NA	NA	NA
WP_012074152.1\|5197961_5198243_+	hypothetical protein	A0A0U4B0R1	Pseudomonas_phage	1.7e-32	75.3
WP_012074151.1\|5198601_5198811_+	hypothetical protein	NA	NA	NA	NA
WP_023122741.1\|5198786_5199047_-	ogr/Delta-like zinc finger family protein	U3PB63	Vibrio_phage	2.1e-13	47.6
WP_034019547.1\|5199092_5199947_-\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	7.8e-129	97.4
WP_012074149.1\|5199858_5201907_-\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	0.0e+00	99.4
WP_034019549.1\|5202064_5203018_+\|capsid	GPO family capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	6.0e-146	99.7
WP_012074147.1\|5203017_5204040_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.1e-193	100.0
WP_012077221.1\|5204036_5204774_+\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	3.8e-116	89.7
WP_012077222.1\|5204871_5205333_+\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	5.2e-79	97.4
WP_012077223.1\|5205334_5205772_+\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	2.0e-75	94.5
5205363:5205382	attR	NA	NA	NA	NA
WP_012077224.1\|5205764_5206430_+	virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	5.7e-119	98.2
WP_012074142.1\|5206441_5207557_+	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	5.0e-208	100.0
WP_029771257.1\|5207578_5208010_+	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	1.9e-75	100.0
WP_012074140.1\|5208009_5208219_+	TraR/DksA family transcriptional regulator	A0A0U4IIN4	Pseudomonas_phage	5.2e-34	100.0
WP_025297585.1\|5208218_5208524_+	hypothetical protein	A0A0H5AUD7	Pseudomonas_phage	7.6e-10	40.4
WP_012074138.1\|5208520_5208982_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	1.4e-79	100.0
WP_012074137.1\|5208978_5209464_+\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	4.2e-79	100.0
WP_012074136.1\|5209460_5209748_+	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	2.0e-44	100.0
WP_012074135.1\|5209771_5209912_+	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	2.2e-20	100.0
WP_012074134.1\|5209926_5211981_+\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	0.0e+00	100.0
WP_012074133.1\|5211977_5212298_+	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	4.2e-51	100.0
WP_012074132.1\|5212294_5213467_+\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	1.5e-223	100.0
WP_012074131.1\|5213459_5213984_+\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	5.7e-98	100.0
WP_012077225.1\|5213995_5215960_+\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	0.0e+00	99.7
WP_012074129.1\|5215973_5216684_+	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	4.7e-135	100.0
WP_012074128.1\|5216680_5217601_+	hypothetical protein	A5X9J6	Aeromonas_virus	1.3e-17	34.5
WP_012077226.1\|5217597_5218137_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	2.3e-94	99.4
WP_012077227.1\|5218136_5218829_+	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	1.5e-40	36.1
WP_012077228.1\|5218813_5219785_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	1.4e-182	100.0
WP_012077229.1\|5219827_5220232_-	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	4.2e-72	100.0
WP_071534354.1\|5220259_5220442_-	type II toxin-antitoxin system HicA family toxin	A0A0U4KLG1	Pseudomonas_phage	3.7e-28	100.0
WP_003155104.1\|5221149_5222052_-	ZIP family metal transporter	NA	NA	NA	NA
WP_012077233.1\|5222118_5222733_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.7e-83	73.8
WP_012077234.1\|5222745_5223195_-	hypothetical protein	NA	NA	NA	NA
WP_012077235.1\|5223223_5224600_-	class II fumarate hydratase	NA	NA	NA	NA
WP_003155111.1\|5224592_5224988_-	hypothetical protein	NA	NA	NA	NA
WP_012077236.1\|5225138_5226488_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_023443259.1\|5226508_5227111_+	ribosome-associated protein	NA	NA	NA	NA
WP_012077237.1\|5227141_5228584_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_003156636.1\|5228586_5229435_-	carbon-nitrogen hydrolase family protein	M1HKP1	Paramecium_bursaria_Chlorella_virus	7.1e-05	24.9
WP_012077239.1\|5229484_5233312_-	TIGR02099 family protein	NA	NA	NA	NA
WP_003156999.1\|5233326_5234784_-	ribonuclease G	NA	NA	NA	NA
WP_012077240.1\|5234817_5235423_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012077241.1\|5235509_5236004_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_071535372.1\|5236003_5237038_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003094393.1\|5237069_5238107_-	rod shape-determining protein	NA	NA	NA	NA
WP_003094397.1\|5238345_5238633_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_012077243.1\|5238648_5240103_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_012077244.1\|5240209_5241655_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA

DBSCAN-SWA_10

5284908 : 5305684

uncultured_Caudovirales_phage(20.0%)

head,integrase,transposase,terminase,tail,portal,capsid,protease

attL 5295061:5295107|attR 5305947:5305993

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086008395.1\|5284908_5286128_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	4.0e-17	43.6
WP_012077270.1\|5286234_5287398_-	type III PLP-dependent enzyme	NA	NA	NA	NA
WP_012077272.1\|5287868_5289890_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-34	38.2
WP_012077273.1\|5290078_5290915_-	regulatory signaling modulator protein AmpE	NA	NA	NA	NA
WP_012077274.1\|5290911_5291478_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A1B0T6G1	Thiobacimonas_phage	6.8e-12	31.4
WP_012077275.1\|5291627_5293877_-	DUF1631 domain-containing protein	NA	NA	NA	NA
WP_003152758.1\|5294161_5295010_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
5295061:5295107	attL	NA	NA	NA	NA
WP_012077277.1\|5295231_5296446_+\|integrase	site-specific integrase	G8C7K6	Escherichia_phage	2.5e-27	32.7
WP_041025519.1\|5296442_5296928_-	hypothetical protein	NA	NA	NA	NA
WP_012077278.1\|5297127_5297328_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012077279.1\|5297449_5297698_+	hypothetical protein	NA	NA	NA	NA
WP_041025406.1\|5297715_5297970_+	hypothetical protein	NA	NA	NA	NA
WP_034081339.1\|5298093_5298294_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171941867.1\|5298386_5298749_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041025407.1\|5299010_5299229_+	hypothetical protein	NA	NA	NA	NA
WP_012077284.1\|5299766_5300996_+\|capsid	phage major capsid protein	A0A2I5ARA4	Synechococcus_phage	7.3e-43	36.3
WP_012077285.1\|5300998_5301508_+\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	3.4e-31	46.4
WP_012077286.1\|5301504_5302743_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	2.3e-65	38.4
WP_012077287.1\|5302739_5303138_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	1.4e-08	46.4
WP_041025408.1\|5303143_5303608_+	hypothetical protein	NA	NA	NA	NA
WP_012077289.1\|5303604_5305101_+\|terminase	terminase large subunit	F1C585	Cronobacter_phage	1.3e-182	65.6
WP_012077290.1\|5305097_5305373_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_012077291.1\|5305369_5305684_+\|head	phage head closure protein	A0A2H4JCB1	uncultured_Caudovirales_phage	9.6e-08	31.4
5305947:5305993	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5455570 : 5540252

Pseudomonas_phage(37.5%)

coat,tRNA,transposase,integrase

attL 5528485:5528544|attR 5541336:5541417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003149934.1\|5455570_5456119_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_023442800.1\|5456149_5456683_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_049792051.1\|5456682_5457225_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003149928.1\|5457243_5458032_+	molecular chaperone	NA	NA	NA	NA
WP_012077377.1\|5458048_5460421_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012077378.1\|5460417_5461365_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_012077379.1\|5461366_5462740_-	MFS transporter	NA	NA	NA	NA
WP_003149922.1\|5463015_5464038_-	ferrochelatase	NA	NA	NA	NA
WP_012077380.1\|5464034_5464952_-	TIGR01777 family protein	NA	NA	NA	NA
WP_012077381.1\|5465359_5466343_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012077382.1\|5466494_5467451_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_012077383.1\|5467460_5468360_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.5e-16	33.0
WP_079262208.1\|5468356_5469805_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.6e-44	27.4
WP_003151671.1\|5469955_5470477_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.2e-60	71.1
WP_003151673.1\|5470610_5471408_-	glutamate racemase	NA	NA	NA	NA
WP_041025524.1\|5471397_5472156_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_012077386.1\|5472149_5472980_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003151675.1\|5472981_5474064_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	7.4e-07	46.6
WP_012077387.1\|5474081_5475350_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_074197235.1\|5475494_5477267_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012077389.1\|5477271_5477889_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_012077390.1\|5477890_5478739_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|5478905_5479847_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003151680.1\|5479964_5480579_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003151683.1\|5480620_5481205_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003151685.1\|5481248_5482349_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_012077391.1\|5482564_5483752_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.9e-73	39.6
WP_071535395.1\|5483738_5484467_+	hypothetical protein	NA	NA	NA	NA
WP_033989083.1\|5484538_5485117_+	hypothetical protein	NA	NA	NA	NA
WP_012077394.1\|5485154_5486138_+	ATP-binding protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	4.1e-12	29.8
WP_012077395.1\|5486147_5488637_+	S8 family peptidase	NA	NA	NA	NA
WP_012077396.1\|5488675_5489500_-	abortive infection family protein	NA	NA	NA	NA
WP_012077397.1\|5489508_5490336_-	hypothetical protein	NA	NA	NA	NA
WP_012077398.1\|5490370_5491540_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012077399.1\|5491532_5493596_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_012077400.1\|5493592_5494375_-	hypothetical protein	NA	NA	NA	NA
WP_012077401.1\|5494371_5497152_-	lactate dehydrogenase	Q6NE04	Leptospira_phage	2.5e-115	33.5
WP_001389365.1\|5497615_5498380_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_049792052.1\|5498424_5498871_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	9.0e-60	100.0
WP_001138014.1\|5498874_5501841_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001082319.1\|5503088_5503892_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|5503891_5504728_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_012077403.1\|5504837_5505416_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.8e-36	48.3
WP_012077404.1\|5505412_5508442_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_000946487.1\|5508934_5509786_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_012077405.1\|5509887_5510901_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	8.0e-72	45.8
WP_001389365.1\|5511720_5512485_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_041025414.1\|5512659_5513070_-	hypothetical protein	NA	NA	NA	NA
WP_041025415.1\|5513114_5513810_-	hypothetical protein	NA	NA	NA	NA
WP_012077409.1\|5513806_5514202_-	hypothetical protein	NA	NA	NA	NA
WP_012077410.1\|5514426_5515650_-	MobA/MobL family protein	NA	NA	NA	NA
WP_012077411.1\|5516179_5516653_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_116803195.1\|5516719_5519536_+	DotA/TraY family protein	NA	NA	NA	NA
WP_012077413.1\|5519541_5519988_+	hypothetical protein	NA	NA	NA	NA
WP_012077414.1\|5520112_5520718_+	hypothetical protein	NA	NA	NA	NA
WP_012077415.1\|5520717_5520957_+	hypothetical protein	NA	NA	NA	NA
WP_033976165.1\|5521126_5521432_+	hypothetical protein	NA	NA	NA	NA
WP_012077417.1\|5521655_5522297_-	DNA-binding protein	NA	NA	NA	NA
WP_116803194.1\|5523388_5524390_-	TrfA family protein	NA	NA	NA	NA
WP_012077419.1\|5524329_5524542_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_079262210.1\|5524870_5525920_-	lipase secretion chaperone	NA	NA	NA	NA
WP_012077421.1\|5526000_5526930_-	triacylglycerol lipase	NA	NA	NA	NA
WP_171941866.1\|5527199_5528309_+	AraC family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
5528485:5528544	attL	NA	NA	NA	NA
WP_041025417.1\|5528656_5529076_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_041025418.1\|5529072_5529318_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_012077425.1\|5529343_5530342_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	1.3e-77	47.4
WP_041025419.1\|5530338_5531631_-	hypothetical protein	Q56VN8	Pseudomonas_phage	7.4e-240	91.6
WP_012077427.1\|5531860_5533135_-	zonular occludens toxin family protein	Q56VN9	Pseudomonas_phage	1.3e-199	87.1
WP_003114150.1\|5533138_5533495_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_049792053.1\|5533499_5534858_-	hypothetical protein	Q56VP1	Pseudomonas_phage	5.0e-61	58.0
WP_012077430.1\|5535017_5535266_-\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	91.5
WP_003115979.1\|5535278_5535530_-	hypothetical protein	NA	NA	NA	NA
WP_012077431.1\|5535651_5536086_-	hypothetical protein	Q56VP5	Pseudomonas_phage	8.4e-63	99.3
WP_041025529.1\|5536624_5536912_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	1.8e-53	96.8
WP_004352675.1\|5536938_5537211_-	hypothetical protein	NA	NA	NA	NA
WP_071535397.1\|5537831_5538164_+	hypothetical protein	NA	NA	NA	NA
WP_138009465.1\|5538218_5538884_-	hypothetical protein	NA	NA	NA	NA
WP_012077433.1\|5538920_5540252_-	AAA family ATPase	Q7M293	Enterobacteria_phage	1.4e-36	34.6
5541336:5541417	attR	NA	NA	NA	NA

DBSCAN-SWA_12

6228704 : 6265278

Shigella_phage(33.33%)

transposase,integrase

attL 6241288:6241304|attR 6272856:6272872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004352797.1\|6228704_6229571_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.6e-60	47.3
WP_012077888.1\|6229567_6229861_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_086008398.1\|6229891_6231045_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.9e-85	53.9
WP_010794468.1\|6231218_6232445_+\|transposase	IS256-like element ISPa1328 family transposase	A0A218MNI5	uncultured_virus	8.0e-50	47.1
WP_021263740.1\|6232482_6235524_-	DEAD/DEAH box helicase	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	1.9e-28	26.4
WP_023096322.1\|6235524_6237537_-	hypothetical protein	NA	NA	NA	NA
WP_012077892.1\|6237533_6238298_-	OmpA family protein	NA	NA	NA	NA
WP_012077893.1\|6238297_6240424_-	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA
WP_012077894.1\|6240476_6241553_-	DUF91 domain-containing protein	NA	NA	NA	NA
6241288:6241304	attL	NA	NA	NA	NA
WP_012077895.1\|6241570_6243214_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012077896.1\|6243210_6244680_-	SAM-dependent DNA methyltransferase	J7I0U9	Acinetobacter_phage	7.9e-28	33.9
WP_012077897.1\|6244682_6245624_-	HNH endonuclease	NA	NA	NA	NA
WP_012077898.1\|6246040_6248407_-	DEAD/DEAH box helicase family protein	A0A2I5ARD8	Synechococcus_phage	1.8e-05	27.2
WP_012077900.1\|6248799_6249447_-	hypothetical protein	NA	NA	NA	NA
WP_025297754.1\|6249512_6249800_-	hypothetical protein	NA	NA	NA	NA
WP_012077903.1\|6251514_6252531_+	WYL domain-containing protein	NA	NA	NA	NA
WP_012077904.1\|6252589_6254302_+	dynamin family protein	NA	NA	NA	NA
WP_012077905.1\|6254315_6256559_+	dynamin family protein	NA	NA	NA	NA
WP_012077906.1\|6256555_6258646_+	hypothetical protein	NA	NA	NA	NA
WP_160328552.1\|6259555_6260371_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_153565776.1\|6260444_6260987_+	hypothetical protein	NA	NA	NA	NA
WP_169311248.1\|6261450_6262605_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_124083333.1\|6262820_6263330_-	hypothetical protein	NA	NA	NA	NA
WP_010794470.1\|6263313_6265278_-\|integrase	integrase	NA	NA	NA	NA
6272856:6272872	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009656

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection