CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_009664	Kineococcus radiotolerans SRS30216 = ATCC BAA-149, complete sequence	1 crisprs	WYL,DEDDh,DinG,cas3,csa3	0	0	2
NC_009660	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02, complete sequence	0 crisprs	NA	0	0	0
NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	1 crisprs	csa3,DEDDh	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009664_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009664_1

2324020-2324133

Orphan

Consensus_repeat	Method
TGATGTTCCACGTGAAACGGCTCCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009664_1

>merge|NC_009664|1|2324020-2324133|CRISPRCasFinder
TGATGTTCCACGTGAAACGCCTCCCCCTGCTTCCGTCCTGACGGCGGTGGAGGAGCCCGACGACGACGTGGTGGGCGACGACCTCGGCGCGGTTCCACGTGAAACGTCGCGTTC

>NC_009664|1|1|2324020-2324133|CRISPRCasFinder
TGATGTTCCACGTGAAACGCCTCCCCC	TGCTTCCGTCCTGACGGCGGTGGAGGAGCCCGACGACGACGTGGTGGGCGACGACCTCGG
CGCGGTTCCACGTGAAACGTCGCGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009664.2\|WP_157873867.1\|2333384_2334275_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NC_009664.2\|WP_041292033.1\|2326482_2327145_+\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NC_009664.2\|WP_012085706.1\|2329864_2330467_-\|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl\|CDD\|236604
NC_009664.2\|WP_012085694.1\|2320546_2320909_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|235126
NC_009664.2\|WP_012085703.1\|2327552_2328593_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_009664.2\|WP_012085700.1\|2325078_2326311_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_009664.2\|WP_012085693.1\|2320389_2320527_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NC_009664.2\|WP_012085708.1\|2330463_2332065_-\|coagulation-factor-5/8-type-domain-containing-protein	unknown	unknown	gnl\|CDD\|270875
NC_009664.2\|WP_012085692.1\|2318318_2319875_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|237605
NC_009664.2\|WP_157873866.1\|2321211_2322222_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234941
NC_009664.2\|WP_012085702.1\|2327199_2327526_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_009664.2\|WP_012085714.1\|2334653_2336366_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NC_009664.2\|WP_012085690.1\|2315384_2316299_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NC_009664.2\|WP_012085697.1\|2322264_2322861_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224760
NC_009664.2\|WP_012085705.1\|2328711_2329494_-\|hypothetical-protein	unknown	unknown	unknown
NC_009664.2\|WP_012085688.1\|2314201_2315377_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NC_009664.2\|WP_012085695.1\|2320901_2321177_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NC_009664.2\|WP_085956136.1\|2316357_2317485_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|236089
NC_009664.2\|WP_157873573.1\|2332250_2333270_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340413
NC_009664.2\|WP_012085698.1\|2322908_2323673_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637

Protein	Function_ID	Function_description	E-value
NC_009664.2\|WP_157873867.1\|2333384_2334275_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	5.53122e-32
NC_009664.2\|WP_157873573.1\|2332250_2333270_-\|hypothetical-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	4.35585e-13
NC_009664.2\|WP_012085694.1\|2320546_2320909_+\|ribonuclease-P-protein-component	gnl\|CDD\|235126	PRK03459, rnpA, ribonuclease P; Reviewed.	8.70423e-25
NC_009664.2\|WP_012085703.1\|2327552_2328593_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	6.52885e-157
NC_009664.2\|WP_012085700.1\|2325078_2326311_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.86485e-70
NC_009664.2\|WP_012085693.1\|2320389_2320527_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	6.16144e-09
NC_009664.2\|WP_012085708.1\|2330463_2332065_-\|coagulation-factor-5/8-type-domain-containing-protein	gnl\|CDD\|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	1.89477e-42
NC_009664.2\|WP_012085692.1\|2318318_2319875_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|237605	PRK14086, dnaA, chromosomal replication initiator protein DnaA.	0
NC_009664.2\|WP_157873866.1\|2321211_2322222_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234941	PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional.	2.74943e-137
NC_009664.2\|WP_012085702.1\|2327199_2327526_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.60744e-48
NC_009664.2\|WP_012085714.1\|2334653_2336366_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	8.59231e-96
NC_009664.2\|WP_012085690.1\|2315384_2316299_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	1.58914e-180
NC_009664.2\|WP_012085697.1\|2322264_2322861_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	3.80929e-38
NC_009664.2\|WP_012085706.1\|2329864_2330467_-\|RNA-polymerase-sigma-factor-SigM	gnl\|CDD\|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	1.49309e-76
NC_009664.2\|WP_012085688.1\|2314201_2315377_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	9.45861e-138
NC_009664.2\|WP_012085695.1\|2320901_2321177_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	8.09868e-36
NC_009664.2\|WP_085956136.1\|2316357_2317485_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	0
NC_009664.2\|WP_012085698.1\|2322908_2323673_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	5.8715e-65

>NC_009664.2|WP_012085698.1|2322908_2323673_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MPEGDGVPRETPSPSVVPESPVEVPVEAVARVFGDRADRAATYRELLATAGVERGLIGPREVPRLWDRHLLNCAYLGEVIDQGSSVIDLGSGAGLPGIPLALARPDLQIRLVEPLERRYTFLREAITELGLRDQVAVARGRAEDVRGEFSASVVTARAVAPLKTLYGWALPLVVTGGHLVAIKGRSASDEIAAAGETLRQMGVTAAPEVLSVGPDDGTGTTVVRVARGHGPLRAATAPAPPGAAKRRPGKGNRR
>NC_009664.2|WP_012085697.1|2322264_2322861_+|single-stranded-DNA-binding-protein
MNDTTEALEATPADETEATDAPSADEAPKRGTSKSRLEEEGDIAADYLEELLDIVDLDGDIDIDIENGRASVAIVADEPGTPALSRLVGPDGEVLEALQELTRLAVQAQTGDRTRLMLDVAGHRLTKRGALVRLAGEVVARVRTSGAAERLDPMPAFERKVVHDAVAAAGLLSESEGEEPHRRVVVLPAALDPQESSD
>NC_009664.2|WP_157873866.1|2321211_2322222_+|membrane-protein-insertase-YidC
MDFFYDLLYPIQWVVAWIMVRFHDALTFVGLDPAGGAAWSLSIVGLVVVIRILLIPLFVKQIKAMRGMQVIQPEMRKIQAKYKGKNDPASRQAMQQEMMALYRESGTNPMASCLPILLQSPIFLALFHTLNGIGKGETVGPLDRTLVDQADNATIFGSQLSDIFMKSWSTGEWNTIILTAVMIVLMSLSQFVTQKQLMAKNTSSASMEGNPFAQQQKMMLYILPVIFAVSGVNFPIGVLLYWLTTNVWSMGQQFFVIRRMPNPGSLAEKELQERKARRAARRGQVLTTDTSAPAVGTTAEHTTNAPARRQRQQPKRGASREQRRPGGPRSSQGPNR
>NC_009664.2|WP_012085695.1|2320901_2321177_+|membrane-protein-insertion-efficiency-factor-YidD
MADRRPWHPLRWPALLLVGLVRVYQLLVSPLLGPTCRFYPSCSAYAVEALRTRGALVGTWLAVRRLFRCHPWNPGGVDPVPPKGHSRVKAP
>NC_009664.2|WP_012085694.1|2320546_2320909_+|ribonuclease-P-protein-component
MLSAEHRLRHKDDFTVALKNGARAGTRRLVLHWAVTDRAHPTRVGFVVSKAVGGSVVRHRTQRRLRHVAAGRLTTLPALGGLLVVRALPAAGTATSAELAVDVDRGLRRLGLVATGAGDG
>NC_009664.2|WP_012085693.1|2320389_2320527_+|50S-ribosomal-protein-L34
MSKRTFQPNNRRRAKVHGFRLRMRTRAGRAILSARRTKGRAQISA
>NC_009664.2|WP_012085692.1|2318318_2319875_-|chromosomal-replication-initiator-protein-DnaA
METDGGDFPSVWERALAQLDDGVTQHQRAFVRLTRPLGLLDGTALLAVPNDLTKDVIEQKVREPLTRALSEAYGSPIRLAVTVDPSIGQVLTPERTGEHSGGVGSVPSVERERGSVLTGLDGDDGLHLDERRSGSLEEDSPLDDSDPDLLFTGYKVDRGPGTGRQPRRPTTRIENSRLNPKYIFETFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYAQNLYPGVQVRYVNSEEFTNDFINSIRDDKAQAFQRRHRDVDVLLIDDIQFLSNKVQTQEEFFHTFNTLHNASKQVVITSDLPPKQLSGFEERMRSRFEWGLITDVQPPDLETRIAILRKKAIGERLEVPDDVNEYIASKISSNIRELEGALIRVTAFASLNRQPVDMQLAEIVLRDLIPNEETPEITAAAIMGQTASYFSVTLEDLCGTSRSRTLVTARQIAMYLCRELTELSLPKIGQHFGGRDHTTVMHAERKIKQQMAERRSTYNQVTELTNRIKKQSGA
>NC_009664.2|WP_085956136.1|2316357_2317485_-|DNA-polymerase-III-subunit-beta
MELQVERDVLADAVAWAARALPSRPPVPVLAGVLLEATDEGTLKLSTFDYEVSARVELPADVRTAGRVLVSGRLLADISRSLPNRPVTLTTEGSKVVVTCGASRFTLLTMTVEEYPALPTLPDSSGELPGAEFTEAVAQVTVAASRDETLPILTGVRMEIEGDRLTLLATDRYRLAVRELRWNPSSPDISAVALVRARTLSDVARSLGSSSMLTMAMADGKSDLIGFQAGGRYSTSLLVDGEYPKVRALFPAESPTHAVVSTAALTEAVKRVALVAERNTPVRLRFEDGVLSLEAGQGEDAQATEALEAALVGESIAIAFNPQFLLDGLGALAAPFARLSFTQSTRPAVLTGQADLDGDDDDSYRYLLMPVRLAG
>NC_009664.2|WP_012085690.1|2315384_2316299_-|decarboxylating-6-phosphogluconate-dehydrogenase
MHIGLVGLGKMGGNMRSRLRDKGIEVTGYDPNPDVTDVPSLAALVEALPSPKIVWVMVPSGKITRDTVANLAPLLKDGDLVIDGGNSKWTDDEINSKLLAERGTGYMDCGVSGGVWGKDNGYGLMVGGSKGHVDLAMPIFDALRPEGPREEGFVHAGGVGAGHYSKMVHNGIEYGLMHAYAEGYELLEAKGIIHDVPAVFKAWTRGTVVRSWLLDLMVRALEEDPKLDNIRGYAQDSGEGRWTLEQAIENAVPMPVLAAALFARFSSRQEDSPSIKAVAALRNQFGGHAVAQAGPTSGTGSTNS
>NC_009664.2|WP_012085688.1|2314201_2315377_-|DNA-replication/repair-protein-RecF
MHVAHLSLVDYRSYPTLELDLRPGTTTFVGLNGQGKTNLVEAIGYVATLGSHRVSGDAPLVRQGAERAVVRAQLERGGRRALVELEITPGKANRARLNGNPVRRTRDVLGVLRTVLFAPEDLALVKGDPGERRRYLDELLVTRWPRIAGVRADYDRILRQRTALLKSAGSAMRSGRADTHTLDVWDEHLATTGAELLSARLALLADLRSPTDSAYRAVSGGQGDLELGYRSSLPLLAEGVATTPGGEAPTRDALREALLASMLEQRKSELDRGVCLVGPHRDDLVLTLGGMPAKGYASHGESWSVALGLRLASYRLLLADDEVDDPGGPVLVLDDVFAELDAGRRERLSEVVADAEQVLVTAAVPEDVPAALRGEHTDRVHVTSGAAVRGD
>NC_009664.2|WP_012085700.1|2325078_2326311_+|ParB/RepB/Spo0J-family-partition-protein
MSEKRRGLGRGLGALIPSSGPTTTSRGGLATIPPAMRTGGRPVDVFFDQRQELVDIPDTPEDVVEERLDDLAVVTTEGPDAEAPEVEALEVEVVAEATPTPAPAEDAAAATSVPEDAPAAPADDVTAAQPSAVDDGLVDVPGARFAEVPVTSIVPNPRQPRTVFDEDDLSELVHSIREIGVLQPVVVRAVEPAEDGVARFELVMGERRWRAATEAGLAAIPAIVRETADDDLLRDALLENLHRSQLNPLEEAAAYQQLLDDFGCTHEELASRIGRSRPQISNTLRLMKLPPLVQRRVAAGVISAGHARALLSLEDGAAMERLAQRIVAEGLSVRAVEEIIALGDADHEPRRRNPARPQPELDSRASTLADRLDTRVKISMGRTRGRVTVDFAGLEDLDRILRLLDATPAP
>NC_009664.2|WP_041292033.1|2326482_2327145_+|GNAT-family-N-acetyltransferase
MGRRMAPLTLDTVADLPKQSRQCVFWELDAVAAQRAAEAGYPDFEKEAWISSVLLQWGPCGRLVYVDDQPAGFVVYAPPVYVPRSTGFPTSPVSGDAVLLTTGWIEPPFRGEGLARMLLQGAAKDLTQRGVKAVEAFGGGPAAVGGDGRDDCAHDSDEACVLPAHLLESVGFTVVRPHHRYPRLRLELKTALSWREDVEAALERLLAGVRVQTLAGVAHP
>NC_009664.2|WP_012085702.1|2327199_2327526_-|thioredoxin
MSSTAPVTDDTFDAEVLQSDKPVLVDFWAPWCGPCRQVAPILEEIAAEHGDKITVVKVNTDENPRIAAKYGVTSIPTLNVYSGGEVVKTVIGARPKPVLLKELGDFIG
>NC_009664.2|WP_012085703.1|2327552_2328593_-|thioredoxin-disulfide-reductase
MSDVTTNEIRNVIVVGSGPSGYTAALYAARAELRPLVFEGSVTAGGALMNTTEVENFPGFPEGILGPDLMDNMRQQAERFGAELITDDVVDVRLEGDVKEVVTGGGETYRAHAVILALGSAYRQLGLPDEKRLSGRGVSWCATCDGFFFREQDIVVVGGGDSAVEEATFLTRFARTVTIVHRRDELRASRIMRKRAEDNPKIRFAWNSEVTGILGGDKVEGLTLRDTVTGETREIPATGLFIAIGHEPRTDLVKGQVDLDENGFVLVEGRSTRTNVPGVFAAGDVVDHEYMQAITAAGMGCSAALDAEKYLAARGDAGLDAQPAREETETPDVPDSETTDRPQPRA
>NC_009664.2|WP_012085705.1|2328711_2329494_-|hypothetical-protein
MSETFGGNAGDGAEEPLSPEEQRVRALLRAAADVGPVPDDVVARLDAALAAARADTPVASLAARRRRPRLPRLLTAAAGILVIGGGAVLAVQHEPSSDSASGSSAADSAAVDVAAPPEARVLVSGRDYTDAAAVEDLAEETLEEEAAEATGGGGRAPDATSGTDATAPGRTLLKAPSGEASATSDPAQRPVAERALACTKSLGVDPVSVLAVEIASWRTVPAALVVHRSGDGAEVVVVALDCVPGDAAYSRVDVPLPAGS
>NC_009664.2|WP_012085706.1|2329864_2330467_-|RNA-polymerase-sigma-factor-SigM
MTPAGPGAPVDPRSDAELLAAHVAGDPEAFGEVVRRHRDRLWAVALRTTGDREEAADALQDALVSALRAAGRFRGESAVTTWLHRIVVNACLDRARRRAVRPTRPLEEEVGPGGEESARTGAALAVAEDATPHVETALDVTSALARLPEAQRAALVLVDMYDVPVAEAAAILDVAVGTVKSRCSRGRAALAELLGGPGNR
>NC_009664.2|WP_012085708.1|2330463_2332065_-|coagulation-factor-5/8-type-domain-containing-protein
MADRYALDRELPVAAGSGTREFRGRDLTLDRPVRVRTLPAADPRAEEFLDAARRAAMLTDPRVPRILDAGTDAAQPGGTPTVFVVEEHVEGRSLGELLSTGPLKPAAVRALVGEVASALDVAARRGLHHTRLTPDDVVLGPDGVVRVRGVGVEAALEVDPPAVSPARAAALANRADAVGLVALVYAGLVARWPALEGTAPHDGLPQSPTADGKPLPPKDIRPDVPNDLDTLCSVTFGPHEDGPRDPAELALQLAPWTMAPWEETLRRMRGEAATREFRGRLKNRDEVVPEAEPPVPFTRPHPTARPPRDDSRFVLAIVGAVVVVGLVLALWQLSRISVPAIPGTAAASAPAATTPAPAPSSAPAPTATPSTPPPAPAVLPVAVVSALDPQGGGESSETAPRAVDGDPATAWESQRYNSAAFGGLKDGMGLLLDLGAEADVTGVQLTAGGEGGSVSLLTAPGPALEGSVPVATAAAGGVQALTPPQPVRSRYLVLWFTQLPTTDGVFRASVAEVAVTGTVAAPQAPTPPTPQAP
>NC_009664.2|WP_157873573.1|2332250_2333270_-|hypothetical-protein
MVDQTAELVTVRLLGLPLALRGRFLRYHEDLLRELALIQIGRERGPASTLPQRLLSLADELARVYAPFQAQPAAALDAAAAAGRASCDVAYTVPAEVAPLLRQVGDVLEEADDFCRAEQHLLTLPAPPEVVAYRRWVFGEFARQLAGEEPRPWRPADASAPPPPPPVPPPPPGEQAVAAGAAPGEPPGRLVGPALVLDPMAGAVSAARRHVRRAVAELHVPEVEESAELGVSELVTNALLHARTAFTITVRSMPTGTVRIEVSDSSPLPAQQRHLGLGATTGRGLRLVEAVSSAWGVDPLASGGVGKTVWFEPRPSTGEDPGSEVFAAEAWAEDLQQLL
>NC_009664.2|WP_157873867.1|2333384_2334275_-|hypothetical-protein
MSGGALAGGLGRALGTGDLSSLDDAARATRVAREVVADDTAAVAAATGARAGAAAAEEHLQRVRADRTAAQAAAATARERVTAALAEQESLLGAAGTALARAVAEEEERARRAALADAAREAAAAGVRDAAARAASTTAPTRPSTASTAASTAAASTAGSTGVADAQSAADAAAGTAAAAIAAARTREGMSYVWGATGPTTFDCSGLTQWAYRQAGTAIPRTSRQQYAGLPKVPLDRLQPGDLVFYASGSDPSSIHHVALYLGGGEVLHAPHTGDVVRVAGVAMPGLYGAVRPTAG
>NC_009664.2|WP_012085714.1|2334653_2336366_+|murein-biosynthesis-integral-membrane-protein-MurJ
MTRTAQASATIVGVSAPQDQQTARPDEPPAGDSLARSSALMASGTLVSRLLGFVRSAVQGAAIGGTTQVGAQVFDVANKAPNVFYMLLAGGVLNAVLVPQIVRALKLPDGGKEFVDRLITLALVIMAGATVVLTLAAPLVVRIYARFPADWMALTAAMAFWCLPQVFFYGLYTVLGQVLNAKGSFGPFMWAPVLNNVVAIAGLVAFMLLVPGAAELPVGEWQPWMIALLAGTATLGIVAQALVLFWPLRRAGFRYRPRWGFRGTGLRSAGRVAGWTFAAVVAGQLVFAFTTQTATRAGRQLSELGVNGASGASYTYAFLLFMLPHSLVAVSLVTALFTRLSSAAATGDTAAVRRDFSTGARTVTVAGALATAAFVALGPWIGAAMIPDGRPIGQVLVAMAAGLVPFSVNYLVSRVFYAYEDARTPFVTAVVNAVVTAIGNVVCWLVVPAQWTVVGIGVTMSVANVVAGTLGLVLLRRKLKSLDGRGIDGHLVLRTGVRVLLIAVLAGGVTAAAARRVGPLEGQVPNLAVVLAGGVVVLVVFVLLCRAMRVRELQDLAGPLLRRLPLPRRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

474919 : 487794

Mycobacterium_phage(38.46%)

portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011981638.1\|474919_475303_+	DUF3307 domain-containing protein	A0A159B6H1	Gordonia_phage	4.3e-34	58.3
WP_011981641.1\|475749_476058_+	hypothetical protein	NA	NA	NA	NA
WP_011981642.1\|476048_476228_+	hypothetical protein	E7EJQ8	Mycobacterium_phage	1.0e-14	65.4
WP_011981643.1\|476224_476416_+	hypothetical protein	NA	NA	NA	NA
WP_011981644.1\|476408_476771_+	hypothetical protein	A0A1B1SGG8	Mycobacterium_phage	5.6e-28	53.3
WP_011981645.1\|476767_477532_+	hypothetical protein	NA	NA	NA	NA
WP_011981646.1\|477515_478025_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011981647.1\|478280_478526_+	DUF3263 domain-containing protein	A0A142KAZ6	Gordonia_phage	2.4e-06	46.4
WP_011981648.1\|478522_478825_+	hypothetical protein	A0A2H4PD62	Mycobacterium_phage	8.9e-19	54.4
WP_011981649.1\|478821_479013_+	hypothetical protein	NA	NA	NA	NA
WP_011981650.1\|479170_479410_+	hypothetical protein	A0A1B3B218	Gordonia_phage	5.9e-26	69.0
WP_011981651.1\|479433_479832_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	4.3e-29	53.5
WP_011981652.1\|479809_481573_+	hypothetical protein	A0A159B6M5	Tsukamurella_phage	2.7e-224	68.1
WP_011981653.1\|481586_482963_+\|portal	phage portal protein	A0A286MQB4	Mycobacterium_phage	2.5e-92	44.2
WP_011981654.1\|482963_483932_+	hypothetical protein	A0A222YWD9	Mycobacterium_phage	4.9e-18	28.0
WP_011981655.1\|483960_484521_+	hypothetical protein	A0A291LIG3	Streptomyces_phage	7.9e-05	33.3
WP_011981656.1\|484590_485520_+	hypothetical protein	A0A2H5BLD0	Streptomyces_phage	1.2e-69	48.2
WP_011981657.1\|485550_486009_+	hypothetical protein	NA	NA	NA	NA
WP_011981658.1\|486005_486326_+	hypothetical protein	NA	NA	NA	NA
WP_011981659.1\|486325_486679_+	hypothetical protein	NA	NA	NA	NA
WP_011981660.1\|486675_487071_+	hypothetical protein	NA	NA	NA	NA
WP_011981661.1\|487131_487794_+	hypothetical protein	A0A2H4J3T5	uncultured_Caudovirales_phage	4.2e-21	31.6

DBSCAN-SWA_2

1971845 : 1983442

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049821138.1\|1971845_1974122_+	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	1.3e-08	36.9
WP_012085342.1\|1974118_1975108_+	D-2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_012085343.1\|1975104_1975983_+	diacylglycerol kinase	NA	NA	NA	NA
WP_012085344.1\|1976001_1976193_-	hypothetical protein	NA	NA	NA	NA
WP_041292965.1\|1976235_1977000_-	alpha/beta fold hydrolase	A0A1L7N183	Ralstonia_phage	1.7e-10	28.6
WP_157873555.1\|1977031_1978561_-	diguanylate cyclase	G3MA91	Bacillus_virus	6.7e-14	31.2
WP_012085347.1\|1978681_1979059_-	hypothetical protein	NA	NA	NA	NA
WP_012085348.1\|1979150_1980629_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	2.4e-16	30.4
WP_012085349.1\|1980644_1981025_+	response regulator	W8CYM9	Bacillus_phage	3.6e-09	37.9
WP_157873839.1\|1981099_1983442_+	glycosyltransferase	A0A1V0S9E5	Catovirus	1.8e-37	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009806

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009806_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009806_1

133626-134087

Orphan

Consensus_repeat	Method
GCTCGCACCCAGGCTCGC	CRT

8 spacers

The CRISPR arrays of NC_009806_1

>merge|NC_009806|1|133626-134087|CRT
GCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACCCAGGCTCGCACGCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCACCCAGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCACCCAGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGCGTCCCGGCTCGC

>NC_009806|1|1|133626-134087|CRT
GCTCGCACGCAGGCTCGC	ACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAGGCTCGCACGCAG
GCTCGCACCCAGGCTCGC	ACGCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAG
GCTCGCACCCAGGCTCGC	ACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAGGCTCGCACCCAG
GCTCGCACCCAGGCTCGC	ACCCAGGCTCGCACCCAG
GCTCGCACGCAGGCTCGC	ACGCAGGCTCGCGTCCCGGCTCGCGTCCCG
GCTCGCACCCAGGCTCGC	GTCCCGGCTCGCGTCCCG
GCTCGCACCCAGGCTCGC	GTCCCGGCTCGCGTCCCG
GCTCGCGTCCCGGCTCGC	GTCCCGGCTCGCGTCCCG
GCTCGCGTCCCGGCTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009806.1\|WP_012001922.1\|137867_138800_+\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001919.1\|140956_142315_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_009806.1\|WP_041293801.1\|136175_136508_+\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_157874022.1\|123684_125547_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NC_009806.1\|WP_012001926.1\|134250_135264_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_009806.1\|WP_012001921.1\|138873_139632_+\|SAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|378023
NC_009806.1\|WP_012001927.1\|132598_133618_+\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001932.1\|126014_129101_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|315512
NC_009806.1\|WP_157874023.1\|136936_137146_+\|MarR-family-transcriptional-regulator	unknown	unknown	unknown
NC_009806.1\|WP_012001930.1\|129996_130311_-\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001917.1\|143354_144272_+\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001928.1\|131697_132306_-\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001929.1\|130354_131704_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372237
NC_009806.1\|WP_012001918.1\|142311_143358_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|227300
NC_009806.1\|WP_012001920.1\|139631_140960_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_009806.1\|WP_012001935.1\|121258_122209_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_009806.1\|WP_012001923.1\|137289_137871_+\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_012001936.1\|120589_121156_-\|hypothetical-protein	unknown	unknown	unknown
NC_009806.1\|WP_157874036.1\|122445_123555_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NC_009806.1\|WP_012001931.1\|129109_130000_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009806.1\|WP_012001920.1\|139631_140960_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00201343
NC_009806.1\|WP_012001919.1\|140956_142315_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	5.75272e-63
NC_009806.1\|WP_012001929.1\|130354_131704_-\|hypothetical-protein	gnl\|CDD\|372237	pfam12642, TpcC, Conjugative transposon protein TcpC. This family of proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologs from Tn916, Tn5397, and CW459tet. This family of proteins is found in bacteria. Proteins in this family are typically between 302 and 351 amino acids in length.	2.19798e-14
NC_009806.1\|WP_012001926.1\|134250_135264_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.4846e-29
NC_009806.1\|WP_157874022.1\|123684_125547_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	8.58186e-09
NC_009806.1\|WP_012001918.1\|142311_143358_+\|type-II-secretion-system-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.08086e-10
NC_009806.1\|WP_012001921.1\|138873_139632_+\|SAF-domain-containing-protein	gnl\|CDD\|378023	pfam08666, SAF, SAF domain. This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.	4.33473e-08
NC_009806.1\|WP_012001935.1\|121258_122209_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.23764e-05
NC_009806.1\|WP_012001932.1\|126014_129101_-\|ATP-binding-protein	gnl\|CDD\|315512	pfam12846, AAA_10, AAA-like domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	1.37194e-35
NC_009806.1\|WP_157874036.1\|122445_123555_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.81388e-23

>NC_009806.1|WP_012001927.1|132598_133618_+|hypothetical-protein
MSSTPLLSRSSASRGLLPCSCQQGSRAAYTRSYSARLQVCAALNREWDAILEAGQHNEQVARWSRGPLRHTSAAGVGSVQDLEQACRDAAGSANDTLLLALLRAYQDGEAFAGRVLLQLFLGKIVRMGLPGRTGSTAEEYESDALEAFWTVMSTYPCDRRPRSVAANLALDTLHQVRVRPQTIERLDWDLWSWELHNHEERAKEHDPTSSVLVLIRDGLQAGAISDGEAQLLAMTYAPSSVPITGVEMSMQLGISAATLRQRTSRAVARLSAFVHEDTSAPQRRLSPTCPAKTLVTDLSHWTDECELLELMGATGTASSVHRRRDMGQQASRHVGSHER
>NC_009806.1|WP_012001928.1|131697_132306_-|hypothetical-protein
MTENEPAPDICPTDTSHELTPSALAARSCTAPASAEGQNGDAPEVVGELLFATAEAYDGMQTLRARLSTLQSQPFDLAAATAVVELLSSARWQRARSSWHVLQGAQVRGDEELAGTDEASDEGIEDRLAVADAASTRLSDSLAPERAPTTVLPTGTDRGSAPRGTQRVSDLLLELGTVYGWSGIRRIATGPGHITGIGGQPC
>NC_009806.1|WP_012001929.1|130354_131704_-|hypothetical-protein
MLTASRRTAARSANAPASIDSEVTGLRARLNRGANRVGANRSSSKGRQGDTSQDAPQAARTMGWTSGAAHGAGLVRLLLLLALLAGPAALLLWWQAGIRVSTQVPASTAAQQDPGEVAAVGNFAEEFVTAWLTTPAGNEQALSFYLQTSNGFRLPSTVSRIQNVAVADVTHVQDYAAAPSAPAANTDQSAAGEAGAETEQQDGVAGPSTAWQVTVAADVEEPDSTGARVMVRRYFAVPVLAQVGTTNGMSTAAAGASRSASAAAPTAVTGPTAGAASSMPVRQMRALLLPTPVAGPVSGEGAELAYNQQVNITGGLGTSISQFLAAYATGSGDVTRYVTPGHVIKAITPAPYLSVQVQSVLAREDDPTSDAPSDGQHAQVLVTAVFGNRDQQPGSTQYALDLTARGGRWEISSIAPGPALTLPTAAGTAHPASSAANASPAASTAAQHP
>NC_009806.1|WP_012001930.1|129996_130311_-|hypothetical-protein
MDIFNRIDQMTGSAETTVKGFAILIGFWVVGSTLNWFKTITLGRVVLAVVIAAVVVVVVRKPDLLADDVEKTVALPAVQQTPGVHADAIDLDSGRVTTTSAVQL
>NC_009806.1|WP_012001931.1|129109_130000_-|hypothetical-protein
MNSATAGGVEVTLPPGHRITRFYTLARRFPTLIGRLPNGSDIPYGPYTVGQFVTAVCLLVVGYRTMPLWGGGRGLFVNGPLLLGLTAAVIIVMRKVPWRGRGPVPVLRGMLGSYSATEGTYRGKPLPARQATPVMSTIVIADETTMIAAEALLQQRHPSPVPPTPAVEAAPVLVSSTSRPRAARRGGLLGIAQTGAQAIVPASAANRQDVTAPNEVTGPLTGPLTGPLTGPLTGPLTGPLTGPLTGPLTGPLTGPLTGVQRLRQQARAKATSTAAADSTTGSPARPLTATGSTGRH
>NC_009806.1|WP_012001932.1|126014_129101_-|ATP-binding-protein
MEHPIQNLCGHLLFSRDGTVWATWRLQGQAYGRRAVAEKEQIRVLHQMLYRSLGGESLHLGFEVDTDPVQVIRDMLRGLNHPLEELPEWAAEVEATTERLETDLPLSERTYWLSVPLRNSGASRLSEPLRAGTTSLLNKLGAPRGVPATAILADRLQQAAEIQALIPGPFNARPATAAETVWLYRHAQTRGLGQHDTWLPPAPSTDELKAAADMTEHELAAVQHMASPGRIGRLILDEAAVSDVPADGWRKGFRARLRRLLPSQRKVLKIVDTDDDTLVSYQSLAVLAGTPTAGAVFPGTEWLGKAEDSGVPVDWAVRMRNTAREEVLSRNQRAVKNLNDQYMQREGEISTGSHELDTVAAALTEYQALLAKDKLEVELQTITFFATSAATREQALINGATLARFYNAFGHPLERPLGEQQDAWWAMLPGTAWPKKFNDLTQISLSEGFSAAVPNVSSALGDGRGALWAVNETTLATSVVMVDLFATILANFSAAVAVAGELGSGKSYALKSLAGALVDRGARLVSIDRSSTGEYVPFGRSLGSCTVAAVLDNLDAGVYLEWSLDPLRMFPGDEGSRLAQRLLTPLLSIVPDSDVELALTYTTDPAYRAKHDIDSLQTLTEHLLDPARHDLPGANELGRKLRGLRTKSYARVLFDQTLPALDLWSSRALIFTTHGLQLPTRAELLNEHLFRKMDPEKHFGRAMYALLMSLARAVAFADPDELVFFVCDECHHITASIEGEQELEIFVREGRKVGAAAGLGSQDCENDFGSPTLRGLIPYRLVMRLTDENLARKALEWIGLEPTQEHLDEITGDLSPRDPADPDGKVDPERRGEGIFRDSYRRIGRVRILGPALEARRIAYSTTPRASSSKLLKQPTSPSTAAATPPATRPATRSDATRPATSALEPGTRTGRTTSRVTPPSTTSPSTTSPSTTSPSTTSPATPIRRPQRTSTASTGTAAAVLDKPTRVRNQAQAADVTAAAAPEASSAPGAALPPSRRKKASPRRSAAPTSTSHQPEGEPQDRDEDQG
>NC_009806.1|WP_157874022.1|123684_125547_-|hypothetical-protein
MAPLDAADTHELSIGKYQLSVDTGGVTNAMKLITNGVLLSGMWEAYRWTVGAAVAMINLALQMEWVQWLVEAIKPVALTLQNDVIAKLGLRGLALVVMGLWVGCIIASGRFAKGLVQLLVSTTIAVLAAGALANPVALITGPHGVLYGARDAGQAVATVITSDGKSATPDPGLIEQKTGGAMVDTFVRLPHQMINYGRVIDGTSCQSAYDKALAGGPYDSDDDSARSAVGDCDEKLKDWADDPGWTGVGAIAILTPAGGALAALGIVLVVLIFLATLMVIFFAVKLIIDVILAILPGERSGLWSSVAGLLGAVLTVAGLIILLALYCVFLRGVLTTKTNTDMLVRFFIVDAMVISFIVVTVVARKRISERARRMAEKAAAFSGGGKARPAQMPKLSQARQAIGQAAAMRAAGGRALGGSGASSGGAVGGAAAAGGGNAAQRILQRVTSNRVVKAGVTAASLAGGVAGVAAKATIGAPVYVPRATRIVKAAARSRAAAARGVVQRKVGQGKAFAGEYRDGLATAARPAVAIGKAAGRAAAPAVTAAAIGLSTPKGAGSSAAPTAGMSSTRTGARPGASPRRTAAAARNRQAGRVEAARATAPPRPAAGSRMPRFRFGKKSA
>NC_009806.1|WP_157874036.1|122445_123555_-|hypothetical-protein
MMLAVVAAVAVLLLVVVSALSGGGGGVSGLAPSSVPGVNAVLLDAFGKAAAATPTVAPKCTGMRWSILAGIAQVESNLAAGRQISPTGDITPHIIGPALNGSGVGGNRTAIYDTDGGRWDGDTVYDRAVGAVQFIPTSWVAYGRDGNGDGVADPHNAYDVTLGAVVHLCGTSAKDLSNREQLSTALYGYNRSQTYVAKVLANIDTFDQIGVAAGGAAVPEASGRAAVVIAAARQWTGTPYSWGGGSGRPGPGGTVIGGPSRGFGRGANTVGFDCSGLTQYAYAVAGIQLPRVSSQQSLQGQRIPRSAGLEAVAPGDLIFFGSNPGAGTGIYHVAIYLGGGQMINAPRTGTFVREEAVWMSSYAGAVHFP
>NC_009806.1|WP_012001935.1|121258_122209_-|hypothetical-protein
MQPITARTDRRRTRPLAASDPDPDDFPDASSPNASASDARRLESDDLLAELPEDDLSDEDDRDDGDGGHDGDDVEGPERAVPGRSVLLPSCAAALLAVVGALCLLPVPLPWEAPTPAATSTTATERQATTPPTGNVEGGSASSPAPPALTTTAGAPHPVLPPAASTTDSVAPSPPTPAAGEDASSIPTPEDTLAGPVSDQVLQDLLNSSLPRDRAITDPALLGSTDGQELLEVAWQALASDVEAGGWTQPHQQAHAVLRTGRDDTQDLPIVVDVVVMWAALDGQGERTERELSTVRVSKGSGSWAPGKITTASDGS
>NC_009806.1|WP_012001936.1|120589_121156_-|hypothetical-protein
MSEDPETHDSPLADPFGSEPRNGKAGHIGKESVESPAAPLAEARRGGRYNPDRSTGLRAHSHYTPKELEERAKNAWYWTQLEVDGFNTKSELVIAGMTLMCELLEEQYNDGQLFPPAPEQTRRGPSPAGSARQSQAMRAYWNRRRTPDQEPQGGADPAPAASASPLTIEGSLGSSAGGEEPPSAALGA
>NC_009806.1|WP_012001926.1|134250_135264_+|ParA-family-protein
MATPTIDRDGLGRALAFSNIKGGVGKTFATAQCAGLLASVPDYRVLAVDLDIQGNLDEDFGLGDRSDGGQGLLQAVMTGTAPQPLMDVRPGLDVICGGEYLADLADVIDAQAKRQRDPNRAYNALATCLSPLAADYDWLLFDCPPGNETLLQMALGAARWVVIPTRTDDSSRKGLRKVARRFVEARAVRGPEAPLDLLGIFLSAVNSSAKTLRREARDAIIGDLGPAGEQLMLNTVIRYAESSASGARNRGLLVHELEQQVATAEPWWQAAREGRPVVSQPGAASAAGLASDFQSLVQELLARISAAESTDGAAHSQEVNDDVDAYVQAALRQDASA
>NC_009806.1|WP_041293801.1|136175_136508_+|hypothetical-protein
MAYVPAATRDLLARLRGDRGRTLGELVLKALNAQHAQLAELMQQRRPQVVEGPLFSMAPPPSQVPTVQIAMRLSQAHWDVLDTLVEQYGAANRGELIDAVVQAEYGSTSA
>NC_009806.1|WP_157874023.1|136936_137146_+|MarR-family-transcriptional-regulator
MVEPSRTDWWLLEDVAVFLGSSKSTVTAYRSRGQLPAADTTFGRSPAWRPQTIRDWAARRPGQGWRKTT
>NC_009806.1|WP_012001923.1|137289_137871_+|hypothetical-protein
MQRFTTSRLAAASAAVAVLLLAGCGNNDDIDFGSDPQQGSSSTSSPTPSVDTEQLEQQKVLEGYNAYWTTYDATAAQPSPDKAVVSQALTPVAVDPALDTSVNDIVNAALAGQKAYGNYVVDPKTPVFQNEEHTEALVTDCIDSSQSGWEDATTGQKLTVGVPAVSSKATLVKGDDGTWRMSQVTFDDTVTCS
>NC_009806.1|WP_012001922.1|137867_138800_+|hypothetical-protein
MSAVGRRRGLTAAAALVSTLVVLPSAVADDGVPPVVVSNSHGGVGTTVHQTGTPGGSGKAANGAQTVRARGAGSTCSYNDTVVTSTGGTAVTPAGAGRANENAGTGLVGDSTQGRFVTRFCGGASTVIWVPNGAVAGPAGVPTVTPEMLAQDARNLLPIPVPAYATNGWGPGASLVNMPTWWWVTNASGSLTQRTSLGAVWAEVTATPLTSTWTPNTPTDNPVTCTGMGIAWRDGMSEEQAGHCAVTYTTASFRRLAGADQAFNSQLSVTWRVTWVGSGGTGGTLAPLSMDADIPMQVYERQILNKPPTP
>NC_009806.1|WP_012001921.1|138873_139632_+|SAF-domain-containing-protein
MSLTKAAQKTPNGTPTATAAALKDASTTPTKGASIRARKSDGTPARSRPQTKSSSQAKTNRPMAALAVLIIVGSATAGAVLYSSAGDRHDVLALARDVPAGQKITAEDLRVAEVNGSGFSAVIKEHADQVVGSTAISSLPEGALLTNKMYQDDPIPEPGNVIVGASLKPGSVPSDAQPGRRVAVWKVGVVNGNAPVADAEQIVESALVTEVSTDVAGGNTLLSLDLPRDSAAAYTSAAAAGTVAVSVLPVGS
>NC_009806.1|WP_012001920.1|139631_140960_+|hypothetical-protein
MALIVLGAAKGAPGVTTTTAALAAVWPTPALLVEADPSGSDLQLLARGDNGRHLQGGQRGAGVLGLASHGGNRSTLLKEPITQSCDLGVPVIIGPPHPRAAQAMGPAWNQVGNALAQLSREGEFDVLVDIGRLDDESVALPLISRADVVVLVTRRNLRGIAHTRRVAAIVEEQLRLNSAAAAGATPRLLIVDDLDTPKRVETQWPLAARGLTHSWSMLPPITWDAAGARDLFDATAAQRDTSAFLTSVRTIATELHDIARHFAAPAGGDAALGAAPELPSQSVAPSPQAVTSSTTSSGSSTPAAAAEALGTTKDLGGHPASPDTAGLSPLQVGAVGPPVPAGVVWPPLPPSRRGTAAGSHASDFGTDLDASLEERDPAKTGENPDSASATEEDPDSASATGPSTDPSTDPSTARDEETAPDPVTVTHPHRDPQLTSSGAGQR
>NC_009806.1|WP_012001919.1|140956_142315_+|CpaF-family-protein
MTLQPLTSGIEQLPDTSQVVDFALVQRLRTTVAAGLNAERRRRADDEQLREMTSQDELLFADSLITRSIAAEKQDQMQLGHRLTGEDELRAALRAAIFGLGRLQPLVDNPALSDIAINGCDQVWVKTLSGQKLRGPAVAESDEELIQWVRDTATYNGLSSRPFDPANPYLQMRLPGNHRLTAQMSTSERPVVSIRLYRLQSVRMHELHARGMFTDRIGAFLHAAVRAKKAIMLVGETGSGKTTLLRALANEIPARERIITIEHFLELGLPPELHPDLVAFEERPANAEGLGAVTMEDLVMNSRRMDPDRVILGECIGPEVVALLDSITQGNAGGLSTIHAPTAHAAIDKIALYAVKAPTPLTMEAANMLTSIGLDLLVLVKKTELPDGTVRRHVASIVEVGKYDGQQVITNELFRAPTGAVQALPKAALSDELRESLKAAGYDDKQWAQDAR
>NC_009806.1|WP_012001918.1|142311_143358_+|type-II-secretion-system-protein
MIDQTFLLVTLAGLVFGLGVVLLVLALRGQGAGVRPPRALQLGHWPRETRIRWGVAVAGGLLTLLITRWITVALAIAVIAVMWPRLFGGARSQARQIRKLEALASWVESLRDTISTGQALPEALPASALTAAPEIAEPLANLLDRMRARQSLDQALLLLADDLDDPEADSVIGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAGRASMRRGVTFVIITTCTLVIGMTVFNRDYVEPYSTVTGQIVLAIVIGLFTAGLFWLRRLADFETRRRFLVTPQTTSQAAAQSLQPVPSAQSGERADVRGAGEVDVASSLDLPSAPTLAPAGVTSAPTSASTSASGGTR
>NC_009806.1|WP_012001917.1|143354_144272_+|hypothetical-protein
MTAMVLVAMLLAAGLLLLVRALRPSQPSLGEQLARLGAQTSYDERYRAAASTARSHTSKAHRWLARRLAGTPVMTSTIDDKLSRDLSLLNVDAAAFTATRVAMVAAGFLLAPVLCFIALAVTGGSTPAVVVLTVTLLVTLVAYVVPARRVHSTAESRRADFRAAITSYMDLVAMRAASGAGASEALADAARIGRGWPFARVRLALADARISGYTPARALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLAVAQGKAGERSQTMVIAQLLLALGFMLFVLYPPVSNFMTAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806.1	135426-135455	2	0.933
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806.1	150968-151045	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806.1	150980-151057	18	0.769

1. spacer 1.5|133932|30|NC_009806|CRT matches to position: 135426-135455, mismatch: 2, identity: 0.933

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acgcaggctcgcatcccggctcgcatcccg	Protospacer
************.***********.*****

2. spacer 1.1|133644|78|NC_009806|CRT matches to position: 150968-151045, mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

3. spacer 1.1|133644|78|NC_009806|CRT matches to position: 150980-151057, mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133752-133805	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133764-133817	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133776-133829	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133788-133841	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133800-133853	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133812-133865	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133824-133877	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133836-133889	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133848-133901	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133860-133913	0	1.0
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133932-133961	0	1.0
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133728-133781	1	0.981
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133740-133793	1	0.981
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133872-133925	1	0.981
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133968-133997	1	0.967
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134004-134033	1	0.967
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133716-133769	2	0.963
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133884-133937	2	0.963
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	135426-135455	2	0.933
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134016-134045	4	0.867
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134028-134057	4	0.867
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134040-134069	4	0.867
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134052-134081	4	0.867
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	134088-134117	4	0.867
NC_009806_1	1.3\|133824\|54\|NC_009806\|CRT	133824-133877	54	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133896-133949	5	0.907
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	135402-135431	5	0.833
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	135438-135467	5	0.833
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	135450-135479	5	0.833
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	28611-28640	5	0.833
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133740-133805	6	0.909
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133716-133781	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133752-133817	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133764-133829	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133776-133841	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133788-133853	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133800-133865	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133812-133877	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133824-133889	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133836-133901	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133848-133913	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133860-133925	7	0.894
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133704-133769	8	0.879
NC_009806_1	1.2\|133740\|66\|NC_009806\|CRT	133740-133805	66	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133728-133793	8	0.879
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NZ_CP015733	Arthrobacter sp. U41 plasmid unnamed1, complete sequence	94783-94812	9	0.7
NC_009806_1	1.5\|133932\|30\|NC_009806\|CRT	133932-133961	30	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	48542-48571	9	0.7
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133632-133709	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133644-133721	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	150968-151045	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	150980-151057	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133656-133733	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133668-133745	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	150992-151069	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	151004-151081	18	0.769
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133680-133757	19	0.756
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	150956-151033	22	0.718
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133620-133697	23	0.705
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	150944-151021	27	0.654
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	135342-135419	28	0.641
NC_009806_1	1.1\|133644\|78\|NC_009806\|CRT	133644-133721	78	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	133608-133685	29	0.628

1. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

2. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

3. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

4. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

5. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

6. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

7. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

8. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

9. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

10. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
******************************************************

11. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 0, identity: 1.0

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acgcaggctcgcgtcccggctcgcgtcccg	Protospacer
******************************

12. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 1, identity: 0.981

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacgcaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
************** ***************************************

13. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 1, identity: 0.981

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	Protospacer
** ***************************************************

14. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 1, identity: 0.981

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacgcag	Protospacer
************************************************** ***

15. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 1, identity: 0.967

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acccaggctcgcgtcccggctcgcgtcccg	Protospacer
** ***************************

16. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 1, identity: 0.967

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acccaggctcgcgtcccggctcgcgtcccg	Protospacer
** ***************************

17. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 2, identity: 0.963

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acgcaggctcgcacccaggctcgcacgcaggctcgcacccaggctcgcacccag	Protospacer
** *********************** ***************************

18. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 2, identity: 0.963

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacgcaggctcgcacgcag	Protospacer
************************************** *********** ***

19. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 2, identity: 0.933

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acgcaggctcgcatcccggctcgcatcccg	Protospacer
************.***********.*****

20. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 4, identity: 0.867

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
gtcccggctcgcgtcccggctcgcgtcccg	Protospacer
.. * *************************

21. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 4, identity: 0.867

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
gtcccggctcgcgtcccggctcgcgtcccg	Protospacer
.. * *************************

22. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 4, identity: 0.867

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
gtcccggctcgcgtcccggctcgcgtcccg	Protospacer
.. * *************************

23. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 4, identity: 0.867

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
gtcccggctcgcgtcccggctcgcgtcccg	Protospacer
.. * *************************

24. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 4, identity: 0.867

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acgcaggctcgcgtcccggctcgcacggcg	Protospacer
************************..  **

25. spacer 1.3|133824|54|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 5, identity: 0.907

acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccag	CRISPR spacer
acccaggctcgcacccaggctcgcacgcaggctcgcacgcaggctcgcgtcccg	Protospacer
************************** *********** *********..** *

26. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 5, identity: 0.833

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
acgcaggctcgcatcccggctcgcacgcag	Protospacer
************.***********.. * *

27. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 5, identity: 0.833

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
atcccggctcgcatcccggctcgcatcccg	Protospacer
*. * *******.***********.*****

28. spacer 1.5|133932|30|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 5, identity: 0.833

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
atcccggctcgcatcccggctcgcatcccg	Protospacer
*. * *******.***********.*****

29. spacer 1.5|133932|30|NC_009806|CRT matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 5, identity: 0.833

acgcag-gctcgcgtcccggctcgcgtcccg	CRISPR spacer
-cgccgtcctcgcgtaccggctcgcgtcctg	Protospacer
 *** *  ******* *************.*

30. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 6, identity: 0.909

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
************************************************************

31. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acgcaggctcgcacccaggctcgcacgcaggctcgcacccaggctcgcacccaggctcgc	Protospacer
************************** *********************************

32. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

33. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

34. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

35. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

36. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

37. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

38. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

39. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

40. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

41. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.894

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********************************************************

42. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 8, identity: 0.879

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacccaggctcgcacgcaggctcgcacccaggctcgc	Protospacer
************** *********************** *********************

43. spacer 1.2|133740|66|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 8, identity: 0.879

acgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	CRISPR spacer
acccaggctcgcacgcaggctcgcacccaggctcgcacccaggctcgcacccaggctcgc	Protospacer
** *********** *********************************************

44. spacer 1.5|133932|30|NC_009806|CRT matches to NZ_CP015733 (Arthrobacter sp. U41 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
tggcaggctcccggcccggctcgcgcttgc	Protospacer
  ******** ** ***********...

45. spacer 1.5|133932|30|NC_009806|CRT matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 9, identity: 0.7

acgcaggctcgcgtcccggctcgcgtcccg	CRISPR spacer
cggcaggcgcgcgtcccggcacgcgcggaa	Protospacer
  ****** *********** ****.   .

46. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

47. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

48. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

49. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

50. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

51. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

52. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

53. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 18, identity: 0.769

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
************************************************************

54. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 19, identity: 0.756

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacccaggctcgc	Protospacer
************************************************** *********

55. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 22, identity: 0.718

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
ccaacggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
 *.  *******************************************************

56. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 23, identity: 0.705

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
gcagtagctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
.*.  .******************************************************

57. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 27, identity: 0.654

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
accccggcgaccccaacggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
** * ***   * *.  *******************************************

58. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 28, identity: 0.641

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
gctgtagctgagacgtcggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
.*   .*** . ***. *******************************************

59. spacer 1.1|133644|78|NC_009806|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 29, identity: 0.628

acgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	CRISPR spacer
acgagcgctgatgcagtagctcgcacgcaggctcgcacgcaggctcgcacgcaggctcgc	Protospacer
*** . *** ...*.  .******************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009664

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009806

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection