CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009665	Shewanella baltica OS185, complete genome	2 crisprs	cas3,csa3,WYL,DinG,DEDDh,RT,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	38	13	0
NC_009661	Shewanella baltica OS185 plasmid pS18501, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009665_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009665_1

3801381-3801490

Orphan

Consensus_repeat	Method
AGTCGCTGACTAATCCCCTATCGCTGCAAGCGAATGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009665_1

>merge|NC_009665|1|3801381-3801490|CRISPRCasFinder
AGTCGCTGACTAATCCCCTATCGCTGCAAGCGAATGATAAGAAGGTTATCTGAGTGTTGTGGGTGCTGAAGAGTCGCAGACTAATCCCCTATCGCTGCAAGCGAATGATA

>NC_009665|1|1|3801381-3801490|CRISPRCasFinder
AGTCGCTGACTAATCCCCTATCGCTGCAAGCGAATGATA	AGAAGGTTATCTGAGTGTTGTGGGTGCTGAAG
AGTCGCAGACTAATCCCCTATCGCTGCAAGCGAATGATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009665.1\|WP_012089839.1\|3787753_3788227_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_009665.1\|WP_012089853.1\|3812969_3813503_-\|sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NC_009665.1\|WP_012089842.1\|3789733_3792040_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_009665.1\|WP_012089846.1\|3798826_3799714_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_009665.1\|WP_006082674.1\|3807654_3808497_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NC_009665.1\|WP_006082671.1\|3803939_3804920_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NC_009665.1\|WP_012089845.1\|3796461_3797700_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_009665.1\|WP_012089841.1\|3788778_3789648_-\|DUF3034-family-protein	unknown	unknown	gnl\|CDD\|378607
NC_009665.1\|WP_012089850.1\|3806067_3807561_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_009665.1\|WP_006082676.1\|3810211_3810463_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|235941
NC_009665.1\|WP_012089843.1\|3792029_3792707_-\|methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|259883
NC_009665.1\|WP_012089847.1\|3799804_3800239_+\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NC_009665.1\|WP_006082669.1\|3801492_3802383_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_009665.1\|WP_012089851.1\|3808839_3810207_+\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NC_009665.1\|WP_006082670.1\|3802523_3803780_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|197875
NC_009665.1\|WP_012089840.1\|3788305_3788782_-\|group-1-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381253
NC_009665.1\|WP_012089844.1\|3793289_3796448_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|334294
NC_009665.1\|WP_012089849.1\|3805306_3805738_+\|thioesterase	unknown	unknown	gnl\|CDD\|274304
NC_009665.1\|WP_011847480.1\|3798093_3798717_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009665.1\|WP_012089852.1\|3810961_3812851_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173790

Protein	Function_ID	Function_description	E-value
NC_009665.1\|WP_012089839.1\|3787753_3788227_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.08212e-50
NC_009665.1\|WP_012089853.1\|3812969_3813503_-\|sterol-binding-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.40465e-34
NC_009665.1\|WP_012089842.1\|3789733_3792040_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.39319e-97
NC_009665.1\|WP_012089846.1\|3798826_3799714_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.50164e-37
NC_009665.1\|WP_006082674.1\|3807654_3808497_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	2.46746e-34
NC_009665.1\|WP_006082671.1\|3803939_3804920_-\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.35549e-44
NC_009665.1\|WP_012089845.1\|3796461_3797700_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.23574e-68
NC_009665.1\|WP_012089841.1\|3788778_3789648_-\|DUF3034-family-protein	gnl\|CDD\|378607	pfam11231, DUF3034, Protein of unknown function (DUF3034). This family of proteins with unknown function appears to be restricted to Proteobacteria.	3.05918e-139
NC_009665.1\|WP_012089850.1\|3806067_3807561_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.25504e-96
NC_009665.1\|WP_006082676.1\|3810211_3810463_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	3.16252e-08
NC_009665.1\|WP_012089843.1\|3792029_3792707_-\|methylamine-utilization-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	1.78435e-26
NC_009665.1\|WP_012089847.1\|3799804_3800239_+\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	4.07763e-33
NC_009665.1\|WP_006082669.1\|3801492_3802383_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.61959e-39
NC_009665.1\|WP_012089851.1\|3808839_3810207_+\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NC_009665.1\|WP_006082670.1\|3802523_3803780_+\|adenylosuccinate-synthase	gnl\|CDD\|197875	smart00788, Adenylsucc_synt, Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein.	0
NC_009665.1\|WP_012089840.1\|3788305_3788782_-\|group-1-truncated-hemoglobin	gnl\|CDD\|381253	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). Typical of the TrHb1s (N) group is a protein matrix tunnel. It includes a Mycobacterium tuberculosis TrHb1, Mt-trHbN, which is encoded by the glbN gene. Mt-trHbN is expressed during the Mycobacterium stationary phase, and plays a specific defense role against nitrosative stress. The cyanobacterium Synechococcus sp. PCC 7002 TrHb1 GlbN, is constitutively expressed, and likely also protects cells from reactive nitrogen species.	9.48736e-39
NC_009665.1\|WP_012089844.1\|3793289_3796448_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|334294	pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.	0
NC_009665.1\|WP_012089849.1\|3805306_3805738_+\|thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	6.44055e-27
NC_009665.1\|WP_011847480.1\|3798093_3798717_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.31879e-11
NC_009665.1\|WP_012089852.1\|3810961_3812851_+\|S8-family-peptidase	gnl\|CDD\|173790	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.	3.67812e-138

>NC_009665.1|WP_012089847.1|3799804_3800239_+|PACE-efflux-transporter
MKTTERIFNALLFEAIALAIIIPVSALISGKGTSELVIVGIALSLYTVVWNYFYNLGFDRVFGANREQRTLKTRILHTFGFEGGLIFISIPTIAWFLQIGWLAAMGLEAVFLIFFFFYSTLFHWCYDKYQPYKTWFTMQATKIK
>NC_009665.1|WP_012089846.1|3798826_3799714_-|LysR-family-transcriptional-regulator
MFSLEQLEAFMETVESGSFSNAARQLKKAQSVISQHVMNLEIDCGVELFDRSGRYPVLTAEGSKLLPYARATILQHRRLKHTALSLFGRQSSEVCLAMDEGIPIQRISEIIQLLESDFPNIELEFLSASSIDIIDMVHSGRASTGLIFSELSMPSSIDFESIGVIEFDLYVASSHPLAKSVAPNMDSLRLYRQLCIRSRNTKTSSFQQAFSPDVWYADNYYVLLELALQGHGWCLLPEHMASSSVSSGNLTRVPIEFEQIGWYANVDVIQHQDKSSLPLLKRLRQLFRELLVGQK
>NC_009665.1|WP_011847480.1|3798093_3798717_+|TetR/AcrR-family-transcriptional-regulator
MMSTVTQTPCVGRPRAFDTDDALAKALEVFWRKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFFYPALEQKTAYLVVESMLLGAASSLVDKSHPQGCLIVQGALTCSEAGQAIKDTLINRRRDGEIALCERLQRAKDEGDLPADAEPLLLARYVGTVLQGMAVQATSGICPNELRKVAELVLANFPRNDES
>NC_009665.1|WP_012089845.1|3796461_3797700_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKSNKPLRIMMLTAVAAFVLSACGEQTAQQGPAPSAPMVDVAQVLHERVTEWDEFTGRLQAPESVTLIPRVSGYIDSVNFKEGALVKKGDVLFRIDPSVFEVEVARLKADLASALSAEQLATNDFERAHKLFDQKAVSAELLDTRESNKRQTAAAVASVKAALMRAELDLAYTQVQAPIDGRVSYANVTAGNYVTAGQSVLTSLVSTASMYAYFDVDEQTYLKYVKLTAEKKRNDPRAGDNPVYMALANERDYQHIGMVDFVDNAMDKQTGTIRVRATFDNEDNSLLPGLFARLRTAGSGAYEGILIDDKAVGTDLNNKFVLVVGADGLVEYRGVTLGEKVQGLRIVTQGLMAEDKIVVNGMQRVRPKMQIDPHMVEMVDSDKLEALRQAQLILDKNQDTLTAQAVETASRG
>NC_009665.1|WP_012089844.1|3793289_3796448_-|multidrug-efflux-RND-transporter-permease-subunit
MLSQFFIKRPIFAAVLSLLFFITGAIAVWQLPITEYPEVVPPTVVVTANYPGANPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVDRAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGVGAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQLLINVKGRLTELSEFEDIIIKVGQNGEVNRLKDVARIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIVYDPTVFVRGSIEAVMKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDAPKDGLTRLMDKLLGGWLFTPFNRLFSRASDGYGWLVRKVIRFGGIIGLVYLGMVALTGVQFAHTPTGYVPGQDKQYLVAFAQLPDAASLERTDTVIKKMSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALDDFELRKSPELSANAIAGQLNKEFAGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGIFSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQADEAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVSTGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKEKQDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTVFGLILTPLFYYALAKRGSKKVEEHKELTVS
>NC_009665.1|WP_012089843.1|3792029_3792707_-|methylamine-utilization-protein
MILNRALFALVLSVSASLTPQIMAAELNIKLVDLQQQAIADTVVELIPAVMPDKALPVGHYEMSQKNRTFIPFVLAVPKGAKVDFPNLDRTRHHVYSFSEAKPFELKLYVGQAEAPILFDKPGLVALGCNIHDYMQAFIYVADSPIVAVTDEKGEIQFKDLAAGQYKVKLWHPWQKAASEPTELMLTTGANQLSLSLDIERQAKPSAPPSGFGHYDAQGKPLHAK
>NC_009665.1|WP_012089842.1|3789733_3792040_-|EAL-domain-containing-protein
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADFGFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVLQPVKAPTLIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGSIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKHELSGAMVLLDIKHFRHINDIIGFANADTLLLLFARRLELLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLKQAIKQLVAWQQRGMQLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPSDT
>NC_009665.1|WP_012089841.1|3788778_3789648_-|DUF3034-family-protein
MNALKLNSLAWNYVKALPCLCLLLGTVPAFAEGSRVVATGGGTTIEGSAGGGIVPWAVINGYGSSDEWSATAMATGVYVDDFTLKVIGASLSFDNRFELSVARQTFDLDTMGGELGQDIFGVKYKLAGELLYTAMPQITLGAQYKRVDDFAIPLAVGARDDWGLDVYIAASKVFFDAVAGCNLLLNGTVRATKANQTGLLGFGTQASNDYQFVLEASAAVLLTDNVALGIEYRQKPNELAFAREDDWQDVFLAWFINKHLSVVTAYANLGSIAGFADQQGWYVSVEGTL
>NC_009665.1|WP_012089840.1|3788305_3788782_-|group-1-truncated-hemoglobin
MSRLLLKLLPVAALLFFTGCAVQTAETSAPQVNSNNDTSSQQTLYQALGGEAGLSAIVDGLLARIATDPRIVHHFQETDIALFRERAIEHFCLIADGGCVYHGENMALSHQGLNITQADFDALVGHLIESMKEQHIPLSTRNALLKRLAPMYSDITYH
>NC_009665.1|WP_012089839.1|3787753_3788227_+|NYN-domain-containing-protein
MKKIALFVDVQNIYYTCREAYGRQFNYRKLWQHLGYEGDIALAVAYAIHKGDDGQLKFQDALKHIGFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDTVILLSGDGDFDLLLQKIHQKYGVETQVYGVPTLTAKSLRDAASQFHPIDAALLL
>NC_009665.1|WP_006082669.1|3801492_3802383_-|LysR-family-transcriptional-regulator
MLDIHWLKTFVTLAEHKHFGKAATALHMTQPNVSLHIKQLEQSTRVKLIDRNPFRLTQAGFRLLESSQKTLMELQICQADLNAINDLSQGTLTIAASDIISRLLLIQPFQLFKAEFPGIDFSLLNTTSSQASELVKNAEADLGFVIAQKESQPLHFTELQQIKWCAIGDNLQQWQQANLSVDTPLAEQPTLILLGHDTRTRELLDPALPSLNLPNYRIMEVGSVDAQIDWAEAGFGVAIVPEFSVYTKANLTTKVTPLPQFPTTSLGYIVRQNQILSKAIKQLLYWVNQEIIRSQR
>NC_009665.1|WP_006082670.1|3802523_3803780_+|adenylosuccinate-synthase
MPSIVVVGANWGDEGKGRIVDYLAADAAASIRFQGGNNAGHTVVNDYGTFKLHQLPSGIFNPNCIAVLGPGMVISPEKLSIEIAEVQATGVDVKLCISDRATLCLPLHALEDTLEEQRLGDLAYGSTRQGIAPAYGDRVMKKGILVGWLNQPEVLQERIQFMLDWKMPQLKALYPSCDFNQTAAEMTAWLLEVTAPWRPFICNVTEPLKALQKQDASLLFEAQLGAGRDLVYGEYPYTTSSNVTAAYAGIGSGLPALRPERVIAVAKAFSSSVGTGTLVTAMEEQDAFRENANEFGATTGRPRDMGYFDAVATRNGVELQAATEIALTKIDCLSGMKDLKICVAYEGEHTENPIWPQTAALSPVYEQMPSWSEDITGCRTFESLPVAAQHYVERIEALMGVRVSMVSVGPERDQMIIR
>NC_009665.1|WP_006082671.1|3803939_3804920_-|chemotaxis-protein-CheV
MSEIKKSEILTESGTNELEIIEFHLHKILPNGGHKVCHYGINVAKVREVIRVPETSDYPNAQPHMVGVFSLREKLIPLVDLAGWLGISTPEDLTHKVVIVTDFNKMINGFLIDSVRSIHRVSWEQVESPSQFLEAGENDCVVAVVRRDGMLIMILDFEKIIADINPELSMDKYDVTLDRSVLINDKMLAKREAKTILIVDDSAFIRKMIENTLRSAGYNIITAKDGGDALEMLMEFESLAEQDNASISDFVSAVITDVEMPRMDGMHLVKRLRESKAYQQMPIVMFSSLMSEDNRTKAMALGANDTITKPEIGRMVGMIDKYVFEE
>NC_009665.1|WP_012089849.1|3805306_3805738_+|thioesterase
MLQFSPTFSFPVQIYYEDTDFSGVVYHPNFLKYFERAREHVIGAERLSALWQQNQLGFAVYRSDMLCHEGVEFADIIDVRTKFYFESKYRTVWQQEIWRPQGKKPAVTATIEMVCMNQARQLAPMPADLIAVLSQGFVSSEQN
>NC_009665.1|WP_012089850.1|3806067_3807561_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQEFAPIYHTLNELLKALPASAGKDKLTGLVNRVGLKRTLTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLNTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALIRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQEKWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKPMRAAELEMNWARLHNAM
>NC_009665.1|WP_006082674.1|3807654_3808497_-|HDOD-domain-containing-protein
MSTEHLLLVSLLKKLKDDALVLPTLPEVAMRVQEVVGRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGVPAESINSAVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACAMLQMYNKRHSTSRLNFDTLTLAGLVHNIGALPVLTEAEAQPHLFTSIDQLRALVRKMQGPLGRAVLKSWDFSTEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAGTELEQRLGVFVARGLPVTTDDLASDEFMEKFHSIRESYQ
>NC_009665.1|WP_012089851.1|3808839_3810207_+|tRNA-5-hydroxyuridine-modification-protein-YegQ
MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNDFKMENLATGIQEAHALGKKLYVVSNIAPHNAKLKTYIKDMEPVVAMKPDALIMSDPGLIMMVREAFPDQVVHLSVQANAINWASVKFWQTQGIKRVILSRELSLDEIEEIRQRCPDIELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWKYDVHEAQQNDSGDIIAMPNAVQIETPTTLGAGAPTDQIYLLQEANRPGEYMPAFEDEHGTYIMNSKDLRAIQHVERLTKMGIDSLKIEGRTKSFYYVARTAQLYRRSIEDASSGKDFDRSLMNQLEGLAHRGYTEGFLRRHVHDEYQNYDYGYSVSDTQQFVGELTGKRNLAGLAEIEVKNKFSVGDSVELMTPQGNISLTIEQLENRKAEAVAAGLGSGHTVYLPVPKEVDLSHGILLRNLPQGQDTRNPHELG
>NC_009665.1|WP_006082676.1|3810211_3810463_+|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALLIDDSCINCDMCEPECPNQAITMGEEIYEIDPDRCTECVGHYDKPTCVSVCPIDCIDPDPNRVESNDELLVKFAVLTQKA
>NC_009665.1|WP_012089852.1|3810961_3812851_+|S8-family-peptidase
MHKKHLIAVAVATGLAYFPVNANEYQATMVSVPQSKAIKDTYIVVFNTPSVLNLSNNNTIAEFAVQQAESLVNQYDVRVMKNFGNVLNGVLINASAQQVKALLKDPNVKYVEQDQVMSVTPMMEANADQPSPTWGIDRIDQRNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFVGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGSTYGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSNDSRSSFSNYGTCLDIYAPGSSITSSWYTSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVTDAKTGSPNKLLFSLENDDGGCGNDCPVDETQLQNNVGIAISGATGSATYYYIDVPANAASLGINLAGGSGDADIYVSQGQKPTTTSYQCRPYQNGNNESCNFTAPTAGRWYVMVQGYSNYANAQLTASYNLNGGGNCTDANCLSNGVPVTNLSGATGTEALYKIVVPANSQLSITTSGGTGDVDLYVKAGTVPTTTSYDCRPYKNGNNESCSITVTQAGTYHVMLRGYANYSGVQLSASY
>NC_009665.1|WP_012089853.1|3812969_3813503_-|sterol-binding-domain-containing-protein
MSAVFSAKIAQQLLEFTPKAIGFPLAKLPFSFKAKAISQLLGLLLAEQAADDELGFLTDKWVAIQVEDLNLAFEVSFNGKWQVRALTDAQVTFSANSAELILVAAAKEDPDTLFFQRKLSIEGDTELGLEVKNLLLSIEFASMPTPIRLSTAKLAAVIERLQIEAKPTVILAKSPSY

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Crispr_ID: NC_009665_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009665_2

3860833-3865826

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRISPRCasFinder
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CRT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	PILER-CR

83 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NC_009665_2

>merge|NC_009665|2|3860833-3865826|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TTTATGAACAGCCTGTATGGCATTGAACAATCGCATACTGATGAATCTCTGAGCTGCCTGTGCGGCGGTGAACCCTCATTTAAACGAGTTTCTAACCGCCAGCCGTTTCTAAGCCGCCTGCGCGGCGGTGAACTTGTGAAATGCTGTTTGTTACAAAGCCTGTCATTTCTAAGCCGCCTGTGCGGCGGTGAACTGCTTTGATGCCTTTTAGCATCTCCGCTAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACTCTTGGATAATTGGTTTTCCACGGCGCAGCATTTTCTAAGCCGCCTGTGCGGCGGTGAACACGCTGCTTCTGCGTTTAGCGGTACTTGGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACGTAAGCCCTAGCTATGCTGGGGCTTTTTTTATTTTCTAAGCCGCCTGTGCGGCGGTGAACAGCTATTAGCGGATAGCGCAATTGATATCGATTTTCTAAGCCGCCTGTGCGGCGGTGAACCATTGCAAACGCCTTAAGCTGTAGTCCTTACATTTCTAAGCCGCCTGTGCGGCGGTGAACTACAAGGTCTTGCTGGCCTAGATGGTCAGGATTTTCTAAGCCGCCTGTGCGGCGGTGAACAAACAGTACCAAACACAGTACTAATTTGGGCTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAAAACACAAAAAACTGCGTATGGTGCGACTGTTTCTAAGCCGCCTGTGCGGCGGTGAACTTTGATTATTGGGTTTGCTGGTTTGTTTTATTTTTCTAAGCCGCCTGTGCGGCGGTGAACACTAATACGGCTATGATGAACATCTTCGGCAATTTCTAAGCCGCCTGTGCGGCGGTGAACTAACCAAAGGGTCTGTTACGGTAGTCGGTGAATTTCTAAGCCGCCTGTGCGGCGGTGAACACGACGAGGGTTTGTTAACTTAGCCGTCAGCATTTCTAAGCCGCCTGTGCGGCGGTGAACACGGTGTGCCAAATATCAACGCTCTAAAGTGGTTTCTAAGCCGCCTGTGCGGCGGTGAACGCCCTGGTTCGGTTTTACTGGTTTGAGATACATTTCTAAGCCGCCTGTGCGGCGGTGAACTGATGGGTTATACCTCTGTGGGTATTGCGGCGTTTCTAAGCCGCCTGTGCGGCGGTGAACATGGAGTCGTAGAATCTTTCATCTGGTCTTCTTTTCTAAGCCGCCTGTGCGGCGGTGAACATTCTCTTTTGCAGCAAATGAATTCTTTATTGTTTCTAAGCCGCCTGTGCGGCGGTGAACCTGTTGCATTCCCACGTATATATGACGATAAATTTCTAAGCCGCCTGTGCGGCGGTGAACGCCAGTGCAGTCGTTAACGGATTGCGTTGATTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTTGATGATGTTTTTGGCGTAGCTGGTTGGCATTTCTAAGCCGCCTGTGCGGCGGTGAACGGGAACGGTTCTCAAGAGAAGTCTCGGTAACATTTCTAAGCCGCCTGTGCGGCGGTGAACGGTTTGCATACCGCATCGGCAATTTGGCTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTTACCGTGGTGCGCGGCGAAACCTCCGCCAACTTTCTAAGCCGCCTGTGCGGCGGTGAACGATGACGGCGCGACATTTAGCCTATTTTCAGATTTCTAAGCCGCCTGTGCGGCGGTGAACCAGAAATATCGCGCGCGCGGTATCGGCGTTCTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTTTGCGGAGGTCGAAATCGAAATTGACGTAATTTCTAAGCCGCCTGTGCGGCGGTGAACGTACCAGCGACTTGCTATTGGTTTTTGTTGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTAAATACTCTTCGACGATTGGCAGCCATTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTTGAAGATTTAGCCGTCGAGCAAGGCTGCGTATTTCTAAGCCGCCTGTGCAGCGGTGAACTATTTTAATAAGTTCCTCATGCTCTTCATTGATTTCTAAGCCGCCTGTGCGGCGGTGAACTAGTAGAACAACGGATACTCTTTCTTGCCTAATTTCTAAGCCGCCTGTGCGGCGGTGAACATTATTCGCAGTGTACTTTTCTATCTTGCCATTTTCTAAGCCGCCTGTGCGGCGGTGAACTGGCTAGTGACGCTTGCCCGATTTGCTCAGTATTTCTAAGCCGCCTGTGCGGCGGTGAACTGTTAATGTGTCTTTTTGTTGCTTAACTTCTGTTTCTAAGCCGCCTGTGCGGCGGTGAACATCCAGTACAGGTTCAAATCCCTCTAGCTGAATTTCTAAGCCGCCTGTGCGGCGGTGAACGCATTAGCTTAATAACTCCATGACTTCGACACTTTCTAAGCCGCCTGTGCGGCGGTGAACGACGGTGATTTCTTTCGGGCTGTTGTACGGACTTTCTAAGCCGCCTGTGCGGCGGTGAACCTGGCCGTTTAACACTGGATTTTGTGCTTGAATTTCTAAGCCGCCTGTGCGGCGGTGAACATAATGCTGCAATGTTTCCTGACCGAAAACTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGGTCGCGGTGCGTTGCATCACTTTATCAAACTTTTCTAAGCCGCCTGTGCGGCGGTGAACCGCGATTTGCGCCCCGCGTTGGCTTAGATAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTAATTGCAATTCGTGATAGCGGCGACCGATTTTTCTAAGCCGCCTGTGCGGCGGTGAACATTCTATTTCATTGGCCTTATCGTAAACCGTATTTCTAAGCCGCCTGTGCGGCGGTGAACACAGTTTTAAATCTTATGATTGTCGTAATTCTTTTCTAAGCCGCCTGTGCGGCGGTGAACAACAGAGAGCAAAGCCATGGTTGCACTAAATATTTCTAAGCCGCCTGTGCGGCGGTGAACTTACGGCCAATGCGTTTTATTCCATTCTTATGTTTCTAAGCCGCCTGTGCGGCGGTGAACCCCAAAAGCAGCTCGAAAAAGTCAGGTTAACATTTCTAAGCCGCCTGTGCGGCGGTGAACGACAAAGTCCTCATGAAATGGTATCTCTATACTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAAGAACCAACAAAGTGGCAGGACATAGTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTGACGAACTTCTAACCTGCCTCGCTAGAAAAGTTTCTAAGCCGCCTGTGCGGCGGTGAACTACATAACCGGTCGAATTTGGAGCATAATATCTTTCTAAGCCGCCTGTGCGGCGGTGAACATTTAACAGGTGATTTATATGCCGAGCTATGATTTCTAAGCCGCCTGTGCGGCGGTGAACACATCGATACTAGGTGAGTTTTTGACCCGCCTTTTCTAAGCCGCCTGTGCGGCGGTGAACCCGCAATACCAATGTATTTGGTGTTCACCGTATTTCTAAGCCGCCTGTGCGGCGGTGAACAGAGAATTATCGGGTTGCTGAACAACGCATAATTTCTAAGCCGCCTGTGCGGCGGTGAACCCACGCGAAACGCATGATTTTGTTCCTAGAGATTTCTAAGCCGCCTGTGCGGCGGTGAACAACATCGCACCAGGCGGGTCAAAAACTCACTTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTTACCTTCAATCGGTACTGTTCGACGATATTTTTCTAAGCCGCCTGTGCGGCGGTGAACGTGGATATAACAACATCGACAACGTAAGGGGCTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTTGGAAGTTTGTACCGCGCTTGCCCTTAGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCTGAGATTAACGTCATATCGCAACCTACAGAGTTTCTAAGCCGCCTGTGCGGCGGTGAACATTTCTCATTCGAATCGCGCGCGACTTCCATCTTTCTAAGCCGCCTGTGCGGCGGTGAACATAAAGCTGAGTTTGTCGGGGTGTTTGATATATTTCTAAGCCGCCTGTGCGGCGGTGAACACTTCCTGCATTTCAAGACGCAACCGTACAAATTTCTAAGCCGCCTGTGCGGCGGTGAACTTATTAGCGGAACTGAAAAGGCCACCGCTTGGTTTCTAAGCCGCCTGTGCGGCGGTGAACACCTTACACCTCTGAACTCTGTCACTTTATATTTTCTAAGCCGCCTGTGCGGCGGTGAACTCCCACCAGTTTGGATGTCTCAATCGATGGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAATATTTACGGGTACAGTAATATCAACAAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAACAGCGTTAGAGCCTATCCTCGCACTGATTTTCTAAGCCGCCTGTGCGGCGGTGAACGCCCCAATCAATGCGATAATTGCAAAGAAAAGTTTCTAAGCCGCCTGTGCGGCGGTGAACTTTGTTGGCGCTGCATTAAAAAATCCGTGTTTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTATGCCATTGGCGCAGAGTTTTGACTCTGTATTTCTAAGCCGCCTGTGCGGCGGTGAACGCAAGGACAGAAGAGCGCTCTCAAGCACTGGATTTCTAAGCCGCCTGTGCGGCGGTGAACATATCCGCGCGCCAGCTAGGGCTATGCTTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTCACGCATGGTCGGCAGACCACTTTGATAGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACATTTATCAGTTTATGTGGTTGTGGTAATTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTCAATCGCAATCACTGCGATGTGCTTCCACTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAAGATATTGAAGCCGCCAAACGATTGATGGCTTTCTAAGCCGCCTGTGCGGCGGTGAACTTGAGCGGTCACAGTGTTCAGTTCAGCGTATTTTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009665|2|2|3860833-3865826|CRISPRCasFinder
TTTATGAACAGCCTGTATGGCATTGAAC	AATCGCATACTGATGAA
TCTCTGAGCTGCCTGTGCGGCGGTGAAC	CCTCATTTAAACGAGTTTCTAACCGCCAGCCG
TTTCTAAGCCGCCTGCGCGGCGGTGAAC	TTGTGAAATGCTGTTTGTTACAAAGCCTGTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCTTTGATGCCTTTTAGCATCTCCGCTAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCTTGGATAATTGGTTTTCCACGGCGCAGCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGCTGCTTCTGCGTTTAGCGGTACTTGGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAGCCCTAGCTATGCTGGGGCTTTTTTTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGCTATTAGCGGATAGCGCAATTGATATCGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATTGCAAACGCCTTAAGCTGTAGTCCTTACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACAAGGTCTTGCTGGCCTAGATGGTCAGGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAACAGTACCAAACACAGTACTAATTTGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAAACACAAAAAACTGCGTATGGTGCGACTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGATTATTGGGTTTGCTGGTTTGTTTTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTAATACGGCTATGATGAACATCTTCGGCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAACCAAAGGGTCTGTTACGGTAGTCGGTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGACGAGGGTTTGTTAACTTAGCCGTCAGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGGTGTGCCAAATATCAACGCTCTAAAGTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCTGGTTCGGTTTTACTGGTTTGAGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGATGGGTTATACCTCTGTGGGTATTGCGGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGAGTCGTAGAATCTTTCATCTGGTCTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTCTTTTGCAGCAAATGAATTCTTTATTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTGCATTCCCACGTATATATGACGATAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAGTGCAGTCGTTAACGGATTGCGTTGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGATGATGTTTTTGGCGTAGCTGGTTGGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGGAACGGTTCTCAAGAGAAGTCTCGGTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTTTGCATACCGCATCGGCAATTTGGCTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACCGTGGTGCGCGGCGAAACCTCCGCCAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATGACGGCGCGACATTTAGCCTATTTTCAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGAAATATCGCGCGCGCGGTATCGGCGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTGCGGAGGTCGAAATCGAAATTGACGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTACCAGCGACTTGCTATTGGTTTTTGTTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAATACTCTTCGACGATTGGCAGCCATTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAAGATTTAGCCGTCGAGCAAGGCTGCGTA
TTTCTAAGCCGCCTGTGCAGCGGTGAAC	TATTTTAATAAGTTCCTCATGCTCTTCATTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGTAGAACAACGGATACTCTTTCTTGCCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTATTCGCAGTGTACTTTTCTATCTTGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGCTAGTGACGCTTGCCCGATTTGCTCAGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGTTAATGTGTCTTTTTGTTGCTTAACTTCTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCCAGTACAGGTTCAAATCCCTCTAGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATTAGCTTAATAACTCCATGACTTCGACAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACGGTGATTTCTTTCGGGCTGTTGTACGGAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGGCCGTTTAACACTGGATTTTGTGCTTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAATGCTGCAATGTTTCCTGACCGAAAACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTCGCGGTGCGTTGCATCACTTTATCAAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCGATTTGCGCCCCGCGTTGGCTTAGATAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTAATTGCAATTCGTGATAGCGGCGACCGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTATTTCATTGGCCTTATCGTAAACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGTTTTAAATCTTATGATTGTCGTAATTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAGAGAGCAAAGCCATGGTTGCACTAAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGGCCAATGCGTTTTATTCCATTCTTATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCCAAAAGCAGCTCGAAAAAGTCAGGTTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACAAAGTCCTCATGAAATGGTATCTCTATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAAGAACCAACAAAGTGGCAGGACATAGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGACGAACTTCTAACCTGCCTCGCTAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACATAACCGGTCGAATTTGGAGCATAATATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTAACAGGTGATTTATATGCCGAGCTATGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACATCGATACTAGGTGAGTTTTTGACCCGCCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGCAATACCAATGTATTTGGTGTTCACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGAGAATTATCGGGTTGCTGAACAACGCATAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACGCGAAACGCATGATTTTGTTCCTAGAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACATCGCACCAGGCGGGTCAAAAACTCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACCTTCAATCGGTACTGTTCGACGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGATATAACAACATCGACAACGTAAGGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGGAAGTTTGTACCGCGCTTGCCCTTAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGAGATTAACGTCATATCGCAACCTACAGAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTCTCATTCGAATCGCGCGCGACTTCCATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAAGCTGAGTTTGTCGGGGTGTTTGATATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTTCCTGCATTTCAAGACGCAACCGTACAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATTAGCGGAACTGAAAAGGCCACCGCTTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCTTACACCTCTGAACTCTGTCACTTTATAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCCCACCAGTTTGGATGTCTCAATCGATGGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAATATTTACGGGTACAGTAATATCAACAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAACAGCGTTAGAGCCTATCCTCGCACTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCCAATCAATGCGATAATTGCAAAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGTTGGCGCTGCATTAAAAAATCCGTGTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATGCCATTGGCGCAGAGTTTTGACTCTGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAAGGACAGAAGAGCGCTCTCAAGCACTGGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATATCCGCGCGCCAGCTAGGGCTATGCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCACGCATGGTCGGCAGACCACTTTGATAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATCAGTTTATGTGGTTGTGGTAATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAATCGCAATCACTGCGATGTGCTTCCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAGATATTGAAGCCGCCAAACGATTGATGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009665|2|1|3860878-3865826|CRT
TCTCTGAGCTGCCTGTGCGGCGGTGAAC	CCTCATTTAAACGAGTTTCTAACCGCCAGCCG
TTTCTAAGCCGCCTGCGCGGCGGTGAAC	TTGTGAAATGCTGTTTGTTACAAAGCCTGTCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGCTTTGATGCCTTTTAGCATCTCCGCTAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCTTGGATAATTGGTTTTCCACGGCGCAGCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGCTGCTTCTGCGTTTAGCGGTACTTGGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTAAGCCCTAGCTATGCTGGGGCTTTTTTTAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGCTATTAGCGGATAGCGCAATTGATATCGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CATTGCAAACGCCTTAAGCTGTAGTCCTTACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACAAGGTCTTGCTGGCCTAGATGGTCAGGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAACAGTACCAAACACAGTACTAATTTGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAAACACAAAAAACTGCGTATGGTGCGACTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGATTATTGGGTTTGCTGGTTTGTTTTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTAATACGGCTATGATGAACATCTTCGGCAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAACCAAAGGGTCTGTTACGGTAGTCGGTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGACGAGGGTTTGTTAACTTAGCCGTCAGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACGGTGTGCCAAATATCAACGCTCTAAAGTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCTGGTTCGGTTTTACTGGTTTGAGATACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGATGGGTTATACCTCTGTGGGTATTGCGGCG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATGGAGTCGTAGAATCTTTCATCTGGTCTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTCTTTTGCAGCAAATGAATTCTTTATTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGTTGCATTCCCACGTATATATGACGATAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAGTGCAGTCGTTAACGGATTGCGTTGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGATGATGTTTTTGGCGTAGCTGGTTGGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGGAACGGTTCTCAAGAGAAGTCTCGGTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTTTGCATACCGCATCGGCAATTTGGCTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACCGTGGTGCGCGGCGAAACCTCCGCCAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATGACGGCGCGACATTTAGCCTATTTTCAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGAAATATCGCGCGCGCGGTATCGGCGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTGCGGAGGTCGAAATCGAAATTGACGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTACCAGCGACTTGCTATTGGTTTTTGTTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAATACTCTTCGACGATTGGCAGCCATTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAAGATTTAGCCGTCGAGCAAGGCTGCGTA
TTTCTAAGCCGCCTGTGCAGCGGTGAAC	TATTTTAATAAGTTCCTCATGCTCTTCATTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGTAGAACAACGGATACTCTTTCTTGCCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTATTCGCAGTGTACTTTTCTATCTTGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGCTAGTGACGCTTGCCCGATTTGCTCAGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGTTAATGTGTCTTTTTGTTGCTTAACTTCTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCCAGTACAGGTTCAAATCCCTCTAGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATTAGCTTAATAACTCCATGACTTCGACAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACGGTGATTTCTTTCGGGCTGTTGTACGGAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGGCCGTTTAACACTGGATTTTGTGCTTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAATGCTGCAATGTTTCCTGACCGAAAACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTCGCGGTGCGTTGCATCACTTTATCAAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCGATTTGCGCCCCGCGTTGGCTTAGATAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTAATTGCAATTCGTGATAGCGGCGACCGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTATTTCATTGGCCTTATCGTAAACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGTTTTAAATCTTATGATTGTCGTAATTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAGAGAGCAAAGCCATGGTTGCACTAAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGGCCAATGCGTTTTATTCCATTCTTATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCCAAAAGCAGCTCGAAAAAGTCAGGTTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACAAAGTCCTCATGAAATGGTATCTCTATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAAGAACCAACAAAGTGGCAGGACATAGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGACGAACTTCTAACCTGCCTCGCTAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACATAACCGGTCGAATTTGGAGCATAATATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTAACAGGTGATTTATATGCCGAGCTATGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACATCGATACTAGGTGAGTTTTTGACCCGCCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGCAATACCAATGTATTTGGTGTTCACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGAGAATTATCGGGTTGCTGAACAACGCATAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACGCGAAACGCATGATTTTGTTCCTAGAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACATCGCACCAGGCGGGTCAAAAACTCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACCTTCAATCGGTACTGTTCGACGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGATATAACAACATCGACAACGTAAGGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGGAAGTTTGTACCGCGCTTGCCCTTAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGAGATTAACGTCATATCGCAACCTACAGAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTCTCATTCGAATCGCGCGCGACTTCCATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAAGCTGAGTTTGTCGGGGTGTTTGATATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTTCCTGCATTTCAAGACGCAACCGTACAAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATTAGCGGAACTGAAAAGGCCACCGCTTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCTTACACCTCTGAACTCTGTCACTTTATAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCCCACCAGTTTGGATGTCTCAATCGATGGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAATATTTACGGGTACAGTAATATCAACAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAACAGCGTTAGAGCCTATCCTCGCACTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCCAATCAATGCGATAATTGCAAAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGTTGGCGCTGCATTAAAAAATCCGTGTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATGCCATTGGCGCAGAGTTTTGACTCTGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAAGGACAGAAGAGCGCTCTCAAGCACTGGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATATCCGCGCGCCAGCTAGGGCTATGCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCACGCATGGTCGGCAGACCACTTTGATAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATCAGTTTATGTGGTTGTGGTAATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAATCGCAATCACTGCGATGTGCTTCCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAGATATTGAAGCCGCCAAACGATTGATGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009665|2|1|3862138-3865826|PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCAGTGCAGTCGTTAACGGATTGCGTTGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGATGATGTTTTTGGCGTAGCTGGTTGGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGGAACGGTTCTCAAGAGAAGTCTCGGTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTTTGCATACCGCATCGGCAATTTGGCTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACCGTGGTGCGCGGCGAAACCTCCGCCAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATGACGGCGCGACATTTAGCCTATTTTCAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGAAATATCGCGCGCGCGGTATCGGCGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTGCGGAGGTCGAAATCGAAATTGACGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTACCAGCGACTTGCTATTGGTTTTTGTTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAATACTCTTCGACGATTGGCAGCCATTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAAGATTTAGCCGTCGAGCAAGGCTGCGTA
TTTCTAAGCCGCCTGTGCAGCGGTGAAC	TATTTTAATAAGTTCCTCATGCTCTTCATTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGTAGAACAACGGATACTCTTTCTTGCCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTATTCGCAGTGTACTTTTCTATCTTGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGCTAGTGACGCTTGCCCGATTTGCTCAGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGTTAATGTGTCTTTTTGTTGCTTAACTTCTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCCAGTACAGGTTCAAATCCCTCTAGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATTAGCTTAATAACTCCATGACTTCGACAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACGGTGATTTCTTTCGGGCTGTTGTACGGAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGGCCGTTTAACACTGGATTTTGTGCTTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAATGCTGCAATGTTTCCTGACCGAAAACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTCGCGGTGCGTTGCATCACTTTATCAAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCGATTTGCGCCCCGCGTTGGCTTAGATAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTAATTGCAATTCGTGATAGCGGCGACCGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTATTTCATTGGCCTTATCGTAAACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGTTTTAAATCTTATGATTGTCGTAATTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAGAGAGCAAAGCCATGGTTGCACTAAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGGCCAATGCGTTTTATTCCATTCTTATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCCAAAAGCAGCTCGAAAAAGTCAGGTTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACAAAGTCCTCATGAAATGGTATCTCTATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAAGAACCAACAAAGTGGCAGGACATAGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGACGAACTTCTAACCTGCCTCGCTAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACATAACCGGTCGAATTTGGAGCATAATATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTAACAGGTGATTTATATGCCGAGCTATGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACATCGATACTAGGTGAGTTTTTGACCCGCCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGCAATACCAATGTATTTGGTGTTCACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGAGAATTATCGGGTTGCTGAACAACGCATAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACGCGAAACGCATGATTTTGTTCCTAGAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACATCGCACCAGGCGGGTCAAAAACTCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACCTTCAATCGGTACTGTTCGACGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGATATAACAACATCGACAACGTAAGGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGGAAGTTTGTACCGCGCTTGCCCTTAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGAGATTAACGTCATATCGCAACCTACAGAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTCTCATTCGAATCGCGCGCGACTTCCATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAAGCTGAGTTTGTCGGGGTGTTTGATATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTTCCTGCATTTCAAGACGCAACCGTACAAATTTCTAAGCCGCCTGTGCGGCGGTGAACTTATTAGCGGAACTGAAAAGGCCACCGCTTGGTTTCTAAGCCGCCTGTGCGGCGGTGAACACCTTACACCTCTGAACTCTGTCACTTTATATTTTCTAAGCCGCCTGTGCGGCGGTGAACTCCCACCAGTTTGGATGTCTCAATCGATGGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAATATTTACGGGTACAGTAATATCAACAAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAACAGCGTTAGAGCCTATCCTCGCACTGATTTTCTAAGCCGCCTGTGCGGCGGTGAACGCCCCAATCAATGCGATAATTGCAAAGAAAAGTTTCTAAGCCGCCTGTGCGGCGGTGAACTTTGTTGGCGCTGCATTAAAAAATCCGTGTTTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTATGCCATTGGCGCAGAGTTTTGACTCTGTATTTCTAAGCCGCCTGTGCGGCGGTGAACGCAAGGACAGAAGAGCGCTCTCAAGCACTGGATTTCTAAGCCGCCTGTGCGGCGGTGAACATATCCGCGCGCCAGCTAGGGCTATGCTTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTCACGCATGGTCGGCAGACCACTTTGATAGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACATTTATCAGTTTATGTGGTTGTGGTAATTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTCAATCGCAATCACTGCGATGTGCTTCCACTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAAGATATTGAAGCCGCCAAACGATTGATGGCTTTCTAAGCCGCCTGTGCGGCGGTGAACTTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
	TTATTAGCGGAACTGAAAAGGCCACCGCTTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCTTACACCTCTGAACTCTGTCACTTTATAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCCCACCAGTTTGGATGTCTCAATCGATGGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAATATTTACGGGTACAGTAATATCAACAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAACAGCGTTAGAGCCTATCCTCGCACTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCCAATCAATGCGATAATTGCAAAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGTTGGCGCTGCATTAAAAAATCCGTGTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATGCCATTGGCGCAGAGTTTTGACTCTGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAAGGACAGAAGAGCGCTCTCAAGCACTGGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATATCCGCGCGCCAGCTAGGGCTATGCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCACGCATGGTCGGCAGACCACTTTGATAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATCAGTTTATGTGGTTGTGGTAATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAATCGCAATCACTGCGATGTGCTTCCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAGATATTGAAGCCGCCAAACGATTGATGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

>NC_009665|2|2|3864899-3865826|PILER-CR
	GCCAGTGCAGTCGTTAACGGATTGCGTTGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGATGATGTTTTTGGCGTAGCTGGTTGGCA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGGAACGGTTCTCAAGAGAAGTCTCGGTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTTTGCATACCGCATCGGCAATTTGGCTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACCGTGGTGCGCGGCGAAACCTCCGCCAAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GATGACGGCGCGACATTTAGCCTATTTTCAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAGAAATATCGCGCGCGCGGTATCGGCGTTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTTGCGGAGGTCGAAATCGAAATTGACGTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTACCAGCGACTTGCTATTGGTTTTTGTTGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTAAATACTCTTCGACGATTGGCAGCCATTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAAGATTTAGCCGTCGAGCAAGGCTGCGTA
TTTCTAAGCCGCCTGTGCAGCGGTGAAC	TATTTTAATAAGTTCCTCATGCTCTTCATTGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TAGTAGAACAACGGATACTCTTTCTTGCCTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTATTCGCAGTGTACTTTTCTATCTTGCCAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGGCTAGTGACGCTTGCCCGATTTGCTCAGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGTTAATGTGTCTTTTTGTTGCTTAACTTCTG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATCCAGTACAGGTTCAAATCCCTCTAGCTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCATTAGCTTAATAACTCCATGACTTCGACAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACGGTGATTTCTTTCGGGCTGTTGTACGGAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGGCCGTTTAACACTGGATTTTGTGCTTGAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAATGCTGCAATGTTTCCTGACCGAAAACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GGTCGCGGTGCGTTGCATCACTTTATCAAACT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CGCGATTTGCGCCCCGCGTTGGCTTAGATAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTAATTGCAATTCGTGATAGCGGCGACCGATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTCTATTTCATTGGCCTTATCGTAAACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACAGTTTTAAATCTTATGATTGTCGTAATTCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACAGAGAGCAAAGCCATGGTTGCACTAAATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTACGGCCAATGCGTTTTATTCCATTCTTATG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCCAAAAGCAGCTCGAAAAAGTCAGGTTAACA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GACAAAGTCCTCATGAAATGGTATCTCTATAC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAAGAACCAACAAAGTGGCAGGACATAGTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TGACGAACTTCTAACCTGCCTCGCTAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TACATAACCGGTCGAATTTGGAGCATAATATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTAACAGGTGATTTATATGCCGAGCTATGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACATCGATACTAGGTGAGTTTTTGACCCGCCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCGCAATACCAATGTATTTGGTGTTCACCGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AGAGAATTATCGGGTTGCTGAACAACGCATAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CCACGCGAAACGCATGATTTTGTTCCTAGAGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AACATCGCACCAGGCGGGTCAAAAACTCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTACCTTCAATCGGTACTGTTCGACGATATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GTGGATATAACAACATCGACAACGTAAGGGGCT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTTGGAAGTTTGTACCGCGCTTGCCCTTAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CTGAGATTAACGTCATATCGCAACCTACAGAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTCTCATTCGAATCGCGCGCGACTTCCATC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATAAAGCTGAGTTTGTCGGGGTGTTTGATATA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACTTCCTGCATTTCAAGACGCAACCGTACAAATTTCTAAGCCGCCTGTGCGGCGGTGAACTTATTAGCGGAACTGAAAAGGCCACCGCTTGGTTTCTAAGCCGCCTGTGCGGCGGTGAACACCTTACACCTCTGAACTCTGTCACTTTATATTTTCTAAGCCGCCTGTGCGGCGGTGAACTCCCACCAGTTTGGATGTCTCAATCGATGGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACAAATATTTACGGGTACAGTAATATCAACAAGTTTTCTAAGCCGCCTGTGCGGCGGTGAACCAAACAGCGTTAGAGCCTATCCTCGCACTGATTTTCTAAGCCGCCTGTGCGGCGGTGAACGCCCCAATCAATGCGATAATTGCAAAGAAAAGTTTCTAAGCCGCCTGTGCGGCGGTGAACTTTGTTGGCGCTGCATTAAAAAATCCGTGTTTTTTCTAAGCCGCCTGTGCGGCGGTGAACTTATGCCATTGGCGCAGAGTTTTGACTCTGTATTTCTAAGCCGCCTGTGCGGCGGTGAACGCAAGGACAGAAGAGCGCTCTCAAGCACTGGATTTCTAAGCCGCCTGTGCGGCGGTGAACATATCCGCGCGCCAGCTAGGGCTATGCTTTAATTTCTAAGCCGCCTGTGCGGCGGTGAACTCACGCATGGTCGGCAGACCACTTTGATAGGTTTTCTAAGCCGCCTGTGCGGCGGTGAACATTTATCAGTTTATGTGGTTGTGGTAATTTTATTTCTAAGCCGCCTGTGCGGCGGTGAACTCAATCGCAATCACTGCGATGTGCTTCCACTTTTTCTAAGCCGCCTGTGCGGCGGTGAACGAAGATATTGAAGCCGCCAAACGATTGATGGCTTTCTAAGCCGCCTGTGCGGCGGTGAACTTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
	TTATTAGCGGAACTGAAAAGGCCACCGCTTGG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ACCTTACACCTCTGAACTCTGTCACTTTATAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCCCACCAGTTTGGATGTCTCAATCGATGGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	AAATATTTACGGGTACAGTAATATCAACAAGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	CAAACAGCGTTAGAGCCTATCCTCGCACTGAT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCCCCAATCAATGCGATAATTGCAAAGAAAAG
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTTGTTGGCGCTGCATTAAAAAATCCGTGTTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTATGCCATTGGCGCAGAGTTTTGACTCTGTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GCAAGGACAGAAGAGCGCTCTCAAGCACTGGA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATATCCGCGCGCCAGCTAGGGCTATGCTTTAA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCACGCATGGTCGGCAGACCACTTTGATAGGT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	ATTTATCAGTTTATGTGGTTGTGGTAATTTTA
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TCAATCGCAATCACTGCGATGTGCTTCCACTT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	GAAGATATTGAAGCCGCCAAACGATTGATGGC
TTTCTAAGCCGCCTGTGCGGCGGTGAAC	TTGAGCGGTCACAGTGTTCAGTTCAGCGTATT
TTTCTAAGCCGCCTGTGCGGCGGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009665.1\|WP_012089878.1\|3855397_3856255_-\|membrane-protein	unknown	unknown	gnl\|CDD\|367531
NC_009665.1\|WP_006086929.1\|3850667_3851378_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NC_009665.1\|WP_012089887.1\|3873296_3874274_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_009665.1\|WP_012089882.1\|3865956_3866541_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NC_009665.1\|WP_006086931.1\|3854209_3854980_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NC_009665.1\|WP_012089889.1\|3880304_3880745_+\|response-regulator	unknown	unknown	gnl\|CDD\|214668
NC_009665.1\|WP_012089885.1\|3868551_3869913_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_009665.1\|WP_012089888.1\|3876968_3880292_+\|hypothetical-protein	unknown	unknown	unknown
NC_009665.1\|WP_080514481.1\|3882224_3883046_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157
NC_009665.1\|WP_086014146.1\|3849393_3850622_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009665.1\|WP_012089876.1\|3851469_3852684_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_009665.1\|WP_012089880.1\|3858818_3859022_-\|hypothetical-protein	unknown	unknown	unknown
NC_009665.1\|WP_012089877.1\|3852693_3854025_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NC_009665.1\|WP_012089884.1\|3867554_3868550_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
NC_009665.1\|WP_012089890.1\|3880745_3881906_+\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NC_009665.1\|WP_006086933.1\|3856607_3857867_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NC_009665.1\|WP_086014148.1\|3858043_3858847_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NC_009665.1\|WP_012089881.1\|3859112_3860684_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_009665.1\|WP_012089886.1\|3869903_3873284_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_009665.1\|WP_012089883.1\|3866550_3867534_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222

Protein	Function_ID	Function_description	E-value
NC_009665.1\|WP_012089878.1\|3855397_3856255_-\|membrane-protein	gnl\|CDD\|367531	pfam03502, Channel_Tsx, Nucleoside-specific channel-forming protein, Tsx.	4.7011e-92
NC_009665.1\|WP_006086929.1\|3850667_3851378_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.60714e-164
NC_009665.1\|WP_012089887.1\|3873296_3874274_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	4.9226e-173
NC_009665.1\|WP_006086931.1\|3854209_3854980_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	5.07211e-176
NC_009665.1\|WP_012089877.1\|3852693_3854025_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NC_009665.1\|WP_012089885.1\|3868551_3869913_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.08531e-173
NC_009665.1\|WP_012089884.1\|3867554_3868550_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.39541e-126
NC_009665.1\|WP_086014146.1\|3849393_3850622_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.52444e-31
NC_009665.1\|WP_012089876.1\|3851469_3852684_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_009665.1\|WP_012089883.1\|3866550_3867534_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_009665.1\|WP_012089886.1\|3869903_3873284_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_009665.1\|WP_080514481.1\|3882224_3883046_+\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	1.2313e-12
NC_009665.1\|WP_012089882.1\|3865956_3866541_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.77562e-69
NC_009665.1\|WP_012089890.1\|3880745_3881906_+\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	0.000182356
NC_009665.1\|WP_006086933.1\|3856607_3857867_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NC_009665.1\|WP_086014148.1\|3858043_3858847_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.22197e-97
NC_009665.1\|WP_012089881.1\|3859112_3860684_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_009665.1\|WP_012089889.1\|3880304_3880745_+\|response-regulator	gnl\|CDD\|214668	smart00448, REC, cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.	5.11505e-06

>NC_009665.1|WP_012089881.1|3859112_3860684_-|peptide-chain-release-factor-3
MSIEINKRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTVKGKKSGQHAKSDWMEMEKDRGISITTSVMQFPYGGALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDSAKGVEERTIKLMEVTRLRDTPIVTFMNKLDRDIRDPIDLMDEVESVLNIACAPITWPIGSGKEFKGIYHILRDEVVLYQGGMGHTIQERRVIKGINNPDLEKAIGSYAADLRDEMELVRGASHEFDHAAFLKGELTPVFFGTALGNFGVDHILDGIVEWAPKPLPRESDTRVIMPDEEKFTGFVFKIQANMDPKHRDRVAFMRVCSGRYEQGMKMHHVRIGKDVNVSDALTFMAGDRERAEEAYPGDIIGLHNHGTIRIGDTFTQGEKFRFTGVPNFAPEMFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPIDTNDLIVGAVGVLQFEVVVGRLKSEYNVEAIYEGISVSTARWVYCKDERKLEEFRRKCSQNLALDGGDNLTYIAPTMVNLNLSMERYPDIEFAKTREH
>NC_009665.1|WP_012089880.1|3858818_3859022_-|hypothetical-protein
MMANWITKTWQVYIQWCDRMGLTPENRRCCMPRLEDPPLAVKCAKPTTADETALPPEAHANGQSTAE
>NC_009665.1|WP_086014148.1|3858043_3858847_-|TatD-family-hydrolase
MQTANRPQSEVFAVIDTHAHLDFAEFDLDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGIHPWFCPEDVDAAILALTSKVAALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAKSVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVEIAQEYIKLGFKLGIGGLIMNPNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLISEHLMSNAVQLFDL
>NC_009665.1|WP_006086933.1|3856607_3857867_-|NupC/NupG-family-nucleoside-CNT-transporter
MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKGMSDAVSSVIGYAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRIIGGALQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMSDLPEDPDKPANVLDAAAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYVFMPLAFLIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGMVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVIAGSLANLMSATLAGLFLAM
>NC_009665.1|WP_012089878.1|3855397_3856255_-|membrane-protein
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPESPAAGDQHNYLEMEFGGRSGVFDLYGYVDVFNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGNVGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPVVENGPLVKGKSTNGGNVFFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
>NC_009665.1|WP_006086931.1|3854209_3854980_-|deoxyribose-phosphate-aldolase
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLLHTLELADAPKPTQGY
>NC_009665.1|WP_012089877.1|3852693_3854025_-|thymidine-phosphorylase
MFLAQEIIRKKRNGLALSSEEIQFFVQGITTNSVSEGQIAALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGPMAAACGGYVPMISGRGLGHTGGTLDKFDAIQGYQTEPSSELFRKVVKEVGVAIIGQTGDLVPADKRFYSIRDNTATVESISLITASILSKKLACNLDALAMDVKVGSGAFMPTYEASEELARSIAAVANGAGTKTTALLTDMNQVLASCAGNAVEVKEAIDFLTGAYRNPRLYEVTMGLCAEMLLLGGLASNEADARAKLNRVLDNGRAAELFGKMVSGLGGPVDFVENYSKYLPQSQIIRPVFADMQGYAYSMDTRELGLAVVTLGGGRRKPGDALDYSVGLTQVCALGDKVDSSTPIAVIHAQSEAAFAEAELAVKKAIHIGETAPEKTPEIYAYIRASDL
>NC_009665.1|WP_012089876.1|3851469_3852684_-|phosphopentomutase
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTVLDKLKEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYGESFL
>NC_009665.1|WP_006086929.1|3850667_3851378_-|purine-nucleoside-phosphorylase
MATPHINAVEGAFAETMLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGKRISVMGSGMGIPSCSIYATELIRDYGVKNLIRVGTCGAISTDVKVRDVIIGMGACTDSAVNRLRFKGQDFAAIANYELMNAVIESAKVRGTKVRVGNIFSADLFYTPDPQMFDVMEKMGVLGVEMEAAGLYGVAHEFGARALCVVTVSDHIRTGEKTSAEERQTTFNDMIIMTLEAAITL
>NC_009665.1|WP_086014146.1|3849393_3850622_+|IS3-family-transposase
MTTSSNSSRKRTQRDYTLAFKLGVVERVEKGEMTYKQAQTRFGIQGKTTVLVWLRKHGKLDWSKPFQHPLMPHSKETPAETIKRLERELAEAKLRNQILNGMVDIMDNEYGAGLRKKLLIRYLWQAKTQSKINLAVACRAVGISRQGIYQAVARMASRRAELSVIKDWVQYWRNYMPRLGTRKLYSLIQPKLVEHDIKLGRDGFFTYLRNEGLLVKPKRSFTKTTFSKHWMKKHPNLLKEEGLHDAEHVLVSDITYLETDQGVHYLSLVTDAASRKIVGHHLSTDMKAESVVKALKMAVKDKRYSANAVHHSDRGSQYCSAVYQDELQANHIQPSMTDGYDCYQNALAERVNGILKQEFLLYRCKTLEELKRLVRESIAIYNEMRPHLSLDMETPNQVHNRKGQLLELA
>NC_009665.1|WP_012089882.1|3865956_3866541_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNHYLDITLLPNEEVGHYFLWEKLYHQMHLALVEHKNRVGQFEIAAAFPQFNEMDNNLGSKLRLLATQPQHLEDLKVSNWLRHFTDYLHISSIRPVPDKIEVYVAYSRPAIRANKAREIARRMKRHNETLVQATAHFEGFKPKKTKAPFVYMQSYTKDSRFPLFIQQTHSAVVKEGNVSFDSYGLSSRGYLPKF
>NC_009665.1|WP_012089883.1|3866550_3867534_-|type-I-F-CRISPR-associated-protein-Csy3
MADIKLSTPSVLAFEAKLLPSDALMFAGNWDENVWQPIIVGEKAVRGTISNRLKAATANDPAKLDAEVSKANLQTVDIAALPHHTDTLKLVFTLRILSDLHIPSTCNDPAYQEALAAKVKQYQIETQFSELAKRYAQNIANGRFLWRNRVGAQAVKIVVTANNQHFTFDSYDFNLRDFADDQQINELAKIIQFGLMEKHALIKVEAYSQLGQGQAVFPSQELVMGGGKGDKSKFLYQLDGQAAMHSQKIGNALRTIDTWHPDFEEIGPIAVEPYGSVTNRGAAYRQPKEKNDFYNLLDAWMLKDKIPSIEQQHYVMAMLIRGGVFGE
>NC_009665.1|WP_012089884.1|3867554_3868550_-|type-I-F-CRISPR-associated-protein-Csy2
MSQYLLIKKLDVQNANAIAGLTYGFPAITNFLGFAHALSRKLSRELDVSLGGVCVVSHKNRVHARQPKGWGDYVFALTRNPLTQQGNTAPINEEGRMNLQVSLLIEIKGLIQGDNQTEQMLIDQINALLPAMRLAGGQITHYGQIEILSDHEQQQKALRRLMPGFILIDRSDYLASHVNGLQQEVVHGAKPSLFDAWCDFATLNYQATRLDTEPEISGPSDTIKADWHYVPKPQAGYLVPIATGYCAISPVYEAGQVANVRDKSVPVAFAETAYSVGEWLSIHRLIDISAGIWRYSYQHPWYLAKTEPFQVDIPSIADVDAALTSFNLDDY
>NC_009665.1|WP_012089885.1|3868551_3869913_-|type-I-F-CRISPR-associated-protein-Csy1
MELTLSDALADYIAQRKQTKLEPLQKARDKMLEKTQEPIEIATANREYAEAAAPIEADFNPVNWLTDAAKRAKQISLATHAAKFTHSDAKASSILVADTAPESQTYLNTASLANKAIDAVGNAAALDVAKLLKISVNGESLIKQLQAQHVDALTAFTQDTELLKEWQLGFARALADEKLTGHTLTKQLYFPVSTVLNGDESQHYHLLCPLFSSSLAHELYHHVTSTRFGDEPKAIREARKKGHYHASLEKIFPATAVQNFGGSKPQNISQLNSERYGQSFLLNCAPPHYQAQSKPPLTSASIFSRQLRFKTAGFIREFKAFLAGVTAQENNFKARYQRDYGFVLPIIDVLLNEAAIIQNMTEFAGWATSAECQLKTAHGLWLDVANPEPRFQQERAKGDWQDIIANDFATWLLAQLQNKERYVLGDIEHQYVKKLCLVQLKTFERHTPKHGDA
>NC_009665.1|WP_012089886.1|3869903_3873284_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKNALKKTRRVLDAFANRIGDNTWQTLITEDGLLTVKKMLKQTASRSTAVSCHWIRSRSRTQLLWIVGNRLKFNEQGIVPVNRTQLNLEHKEWEQGWHLNEVIVLASSIAGLFHDFGKANDLFQLKLKGLTESKGEPYRHEWVSLRLFEAFANGLADKDWLEKLANIDKNSTEIEQQVLSRLFKEDSGYQRPFDQLAPFAKLVAWLIVSHHRLPLAHVGSVHTKEIDSWLSHCFSCHWNSANAENMTAIDTDLIRQNWQFSQGTPLLSRPWQHKARNLAERALNCPLIFTEQVWLEQRFVGHMARLSLMLADHYYSSLLAEKSKVQWRDKTYNAFANTDHKRLPQAGNALKQQLDEHNIGVAVNAQRFAQNLPALKYTLPAIAQHKLFSQNATNAKYRWQDKAFAQAKLIAKGSERQGFFGVNMASTGCGKTIANARIMYGLADEREGCRFSVALGLRTLTLQTGDAYRDLLKLGDDELAVLIGSQAVSTLHQLNNATPQHKQIGSESAEDLFEQLFISYQGQIYDGRLKHWLAASPKLEQLVSAPILVSTIDHLMPATESLRGGKQIAPMLRLLTSDLILDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPSLIKTLFDAYHAGRQHFNQAHFATTEQPPIWCAWFDEYKSETLEISNSRSYIEQHKIFVSKRVKKLACQQVVRRGELVKLELASPTTFDECVAATLHRCLHQLHDMHHVVHPSGRKVSLGVVRMANINPMIAVAKLLINMSPQADYSIHYCVYHSQFPLAHRSYKESRLDNALSRHDEANLWRQPEIQQALSMTNTSNNIFIVLGTSVVEVGRDHDYDWAIAEPSSLRALIQLAGRIQRHRQQVPKTANLLVLNKNIRALKNEHPAYCKPGFESAALPLLQHDLTQLLTTELDAISAIPRIMEPVPSANGSEFQYSDLHKKQHAQAVNSFWGQEHRALQLALGPVGKDKAGVIFYRSYKEANLWWKHDVAWSGEFIRQTAFRQSQPQEAFLLRLPEDEILTWCQLDTTHKPYQYPTLNHRFNSEIVPLAKGCFWWFKPSTEQIYQDLADLLDSSITKVSEQFGEINLRMANKDQPALVWAWHEQLGVYECKDNKDSPWN
>NC_009665.1|WP_012089887.1|3873296_3874274_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKTILHSKRANVYYLEYCRVMQKDGRVLYLTEAKNENQYFNIPIANTTVLLLGNGTSITQAAMRMLAQAGVLVGFCGGGGTPLYMTCEVEWLTPQSEYRPTEYLHGWMQFWFDDEKRLLAAKTFQQARIQFIEQVWQRDRELKTEGFIFKDPAIQAALETFHARTEVATKQSDLLLTEAQLTKVLYKHAANNTQLKDFTRQHQSTDIANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQVLQAFTDHKALDFMFNTVKAVALQDYSAEQIAAQGL
>NC_009665.1|WP_012089888.1|3876968_3880292_+|hypothetical-protein
MVKAKRAVKRTKGRNQANVTRNNLKASFVEEINGLKKIKSLEAFKSALDKKLLNPNFQANFFYTPDLFRENFRKESFALKSSDLLKELHISIVKINKSKNVINKFAKIKLDFERFVLSGQIEQAAECLESVRDLYGLSYWYIENKLAILVRQGSKSLITDFYDEVSTEKLRPVEKRDFDLLFDKSLETIPADRIDFSLDSIIEGLSPDSTDYSTIDFLFRFNPAKVSDFEAILRYYGSCNIIDIYLTTTRIFYTHYANKLINDEMLDLIYSVIGIEDGKWLNFISLLKEDFKITDREESFLEICDEYIKGNFIKVITLSELTLRKWPEMVAIYEFYANSLYNTGAKCQLNSSGLLFQLIDTALIYIAARGDLDINTLNKIFYQHTTIDACQFINLIKSKSNILTQKKTSETIYRFMDVSSTSVNPFRQNSFNDGSFCHKLLTNEHSDEVIESLPEYRALKRKADQFFEQKDYKDASLLYEKITTPPLHFKDELIIKKILCSLKSGNIERATIELCEKYFSKDINMRRFPCKEFLQELENFPEELPCLIQITIAIYILTKVTNGDMHTVALYFDDYMDDKSISFPSEIIPDTVEKRFLLEFALNTDVLEGIHICRKIYDGSSHLMFDRVLILSSLLDSEHDEQKKELFKNEISFLGHQYAKNFSLKDLSPGKIEVDRAVLTSMALESNKDLFSIILDSLKSEPPLPDFDETGTFKGNEKTSHRGSFTFAYQLLLDIRDLYTLDGYYGLDYSLNTDIRHNGIVPVIRSVFEKHNLISNKVDGEYTDNVEFEIRYKRGLSPYYYEQFQNELKEFSAFIDLRINNLKTRAIKIITNDNDDKERVFKFIILEEDVNKLLCLISAGSSYEDCIKWCFDHLENLTEKSMAVGRALILDGLDSEFTGKLTKLSQSLNSIGRGNKDFLERISLVKNDLKNTLTEVSDWLAFSKKTGKDFTLDFPIYEAKLFVEKIFPKVKINISIENNDVSALYDGRSLKSFIKVFIMLIENAAKRRLYDSKVNVVVDIFQEGQSVVINTSNPTKKIDEEIINNINKNINGLDIVSEANREKGSGLYKVKKIFDIDLKIENEIKIITQARKFTVSIKYLNNSLLVG
>NC_009665.1|WP_012089889.1|3880304_3880745_+|response-regulator
MKVLIAEDNELKLKSILGFLERDHFIVDSDITVVMTPDDAIFKIKEKSFDFFILDMSLPAFEQDMKKIRSLSGKKVLMTMKHKRLKTKTVVLTQWDVFGHHDGRVSLSNLKSELLDSYSSFLLDVIFWEPSSNEWEEKISLYIKGL
>NC_009665.1|WP_012089890.1|3880745_3881906_+|response-regulator
MIDFLVIEDNESKFKQIDSLLKKRVGSVFVKRVMSVDSGIEQLKTRQYSFVILDLNLPLMEDGKAVTDGGIKLLKWIKINQKKRKCKVPSNIIGLTEFPNLIEEFSSELNSCRVFAYEYKLNDEGWKNQLTECIKEYSLKLDQEMVKVATKKIIYSVHGIETNGEWQKELSKNLNLDSNEYIHIPHEYNFFPLLSFLIPPLRWIEVRRFKKELEFMAEKHPGCCITLIGHSFGTYLIAKSLKNISQTSTPYFDRIILCGSVLKASYDWDEIIRRHNIKSILNDCALNDRPLVMSQAFAVGLGMAGRVGFKRKHGQLIENRFFNGGHSDFFNSQVFGHWERFIKKGDVVKVNQKQPVTIIDSLCETIILYSPWIIFIILILSICYYY
>NC_009665.1|WP_080514481.1|3882224_3883046_+|HNH-endonuclease
MVVVVNQVERAARAWPVLINRARKKSTITYGELGHAIGVHHRAVRYVLGVIQDYCLEVNLPPLTILIVNSSGLPGSGFIAFDLDSFDEGLQKVYDFDWESITNPFGFSESGDSYESIIAELIHDPSSAGDVYTRIKARGVKQILFREALLKAYSRRCAFTDISALVTLEACHIVPWSQASNAERLDVRNGLLLNSFHHKLFDRGHITLNTDHRIVYYDPHGEEKKYSDLELQLTAGLHGKLIHVPHKLELRPSVECIAKHHQLAGWEIEELDI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009665_2	2.10\|3861386\|32\|NC_009665\|CRISPRCasFinder,CRT	3861386-3861417	32	NC_009038	Shewanella baltica OS155 plasmid pSbal04, complete sequence	4918-4949	0	1.0
NC_009665_2	2.25\|3862286\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862286-3862317	32	NC_009038	Shewanella baltica OS155 plasmid pSbal04, complete sequence	558-589	1	0.969
NC_009665_2	2.35\|3862886\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862886-3862917	32	MH648987	Siphoviridae sp. isolate ctcj11, complete genome	10350-10381	1	0.969
NC_009665_2	2.3\|3860966\|32\|NC_009665\|CRISPRCasFinder,CRT	3860966-3860997	32	NC_011665	Shewanella baltica OS223 plasmid pS22303, complete sequence	40437-40468	2	0.938
NC_009665_2	2.69\|3864927\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864927-3864958	32	MG592561	Vibrio phage 1.191.O._10N.286.52.B4, partial genome	37621-37652	3	0.906
NC_009665_2	2.41\|3863246\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863246-3863277	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	24566-24597	4	0.875
NC_009665_2	2.42\|3863306\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863306-3863337	32	MN855786	Bacteriophage sp. isolate 70, complete genome	19153-19184	5	0.844
NC_009665_2	2.48\|3863666\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863666-3863697	32	NC_041884	Acinetobacter phage vB_AbaM_ME3, complete genome	131403-131434	6	0.812
NC_009665_2	2.7\|3861206\|32\|NC_009665\|CRISPRCasFinder,CRT	3861206-3861237	32	HQ634187	Cyanophage KBS-S-2A genomic sequence	33685-33716	7	0.781
NC_009665_2	2.7\|3861206\|32\|NC_009665\|CRISPRCasFinder,CRT	3861206-3861237	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	620530-620561	7	0.781
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	92401-92432	7	0.781
NC_009665_2	2.24\|3862226\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862226-3862257	32	NZ_CP038263	Acinetobacter baumannii strain LEV1449/17Ec plasmid pEC_gr13, complete sequence	3153-3184	7	0.781
NC_009665_2	2.38\|3863066\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863066-3863097	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	30208-30239	7	0.781
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	NZ_CP014769	Hymenobacter sp. PAMC 26554 plasmid unnamed1, complete sequence	169642-169673	8	0.75
NC_009665_2	2.24\|3862226\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862226-3862257	32	CP033546	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence	131387-131418	8	0.75
NC_009665_2	2.25\|3862286\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862286-3862317	32	MG770379	Klebsiella virus vB_KpnM_KpS110, complete genome	154010-154041	8	0.75
NC_009665_2	2.34\|3862826\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862826-3862857	32	MN693111	Marine virus AFVG_25M354, complete genome	7007-7038	8	0.75
NC_009665_2	2.35\|3862886\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862886-3862917	32	NC_024792	Bacillus phage Bobb, complete genome	61472-61503	8	0.75
NC_009665_2	2.38\|3863066\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863066-3863097	32	MN693032	Marine virus AFVG_117M42, complete genome	27022-27053	8	0.75
NC_009665_2	2.45\|3863486\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863486-3863517	32	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	272615-272646	8	0.75
NC_009665_2	2.48\|3863666\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863666-3863697	32	HQ331142	Salmonella phage S16, complete genome	101495-101526	8	0.75
NC_009665_2	2.48\|3863666\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863666-3863697	32	KJ000058	Salmonella phage STP4-a, complete genome	102580-102611	8	0.75
NC_009665_2	2.48\|3863666\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863666-3863697	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	75205-75236	8	0.75
NC_009665_2	2.58\|3864266\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864266-3864297	32	NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	164459-164490	8	0.75
NC_009665_2	2.72\|3865107\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865107-3865138	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	59758-59789	8	0.75
NC_009665_2	2.79\|3865527\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865527-3865558	32	NZ_CP047896	Sphingomonas sp. C33 plasmid pC33, complete sequence	5261-5292	8	0.75
NC_009665_2	2.80\|3865587\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865587-3865618	32	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	79506-79537	8	0.75
NC_009665_2	2.81\|3865647\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865647-3865678	32	NZ_LR134431	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 22	6831-6862	8	0.75
NC_009665_2	2.82\|3865707\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865707-3865738	32	MK368614	Vibrio phage 2 TSL-2019, complete genome	204975-205006	8	0.75
NC_009665_2	2.4\|3861026\|32\|NC_009665\|CRISPRCasFinder,CRT	3861026-3861057	32	NC_015271	Salmonella phage Vi06 complete sequence	26156-26187	9	0.719
NC_009665_2	2.13\|3861566\|32\|NC_009665\|CRISPRCasFinder,CRT	3861566-3861597	32	KY775453	Salmonella phage Stp1 contig.00003 genomic sequence	29489-29520	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	MN038176	Bacillus phage Phireball, complete genome	151373-151404	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	NC_031006	Bacillus phage DIGNKC, complete genome	150624-150655	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	KJ489399	Bacillus phage Hakuna, complete genome	149996-150027	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	KX349902	Bacillus phage Kida, complete genome	151432-151463	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	MF288917	Bacillus phage PPIsBest, complete genome	151620-151651	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	MN038179	Bacillus phage ALPS, complete genome	151126-151157	9	0.719
NC_009665_2	2.14\|3861626\|32\|NC_009665\|CRISPRCasFinder,CRT	3861626-3861657	32	KU737351	Bacillus phage NotTheCreek, complete genome	151255-151286	9	0.719
NC_009665_2	2.21\|3862046\|32\|NC_009665\|CRISPRCasFinder,CRT	3862046-3862077	32	MT774392	CrAssphage cr128_1, complete genome	83246-83277	9	0.719
NC_009665_2	2.26\|3862346\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862346-3862377	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1716479-1716510	9	0.719
NC_009665_2	2.27\|3862406\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862406-3862437	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	130609-130640	9	0.719
NC_009665_2	2.29\|3862526\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862526-3862557	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1740070-1740101	9	0.719
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	227036-227067	9	0.719
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	209996-210027	9	0.719
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	167652-167683	9	0.719
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	556357-556388	9	0.719
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	167317-167348	9	0.719
NC_009665_2	2.55\|3864086\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864086-3864117	32	MG945466	UNVERIFIED: Microviridae sp. isolate 243-1711, complete genome	4946-4977	9	0.719
NC_009665_2	2.58\|3864266\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864266-3864297	32	MF001361	Enterococcus phage EF5, partial genome	7424-7455	9	0.719
NC_009665_2	2.58\|3864266\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864266-3864297	32	MF001358	Enterococcus phage EF1, partial genome	109891-109922	9	0.719
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	6654-6686	9	0.727
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	26034-26066	9	0.727
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011265	Borrelia duttonii Ly plasmid pl27, complete sequence	6691-6723	9	0.727
NC_009665_2	2.66\|3864747\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864747-3864778	32	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	603904-603935	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581091	Vibrio phage Cla, complete genome	2484-2515	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581096	Vibrio phage pVa-5, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	MK672804	Vibrio phage Va_178/90_p41, complete genome	41024-41055	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658673	Vibrio phage H2 PGK-2017, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581093	Vibrio phage Pel, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581097	Vibrio phage pVa-6, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658677	Vibrio phage P3, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581098	Vibrio phage VaK, complete genome	2493-2524	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658674	Vibrio phage H8, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658676	Vibrio phage P2, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581090	Vibrio phage Her, complete genome	2484-2515	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658678	Vibrio phage pVa-3, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658679	Vibrio phage pVa-4, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	MK672800	Vibrio phage Va_90-11-287_p41_Ba35, complete genome	15699-15730	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	MK672799	Vibrio phage Va_90-11-287_p41, complete genome	15699-15730	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581092	Vibrio phage Len, complete genome	2484-2515	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581094	Vibrio phage pVa-2, complete genome	2484-2515	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	MK672803	Vibrio phage Va_91-7-154_p41, complete genome	51282-51313	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658680	Vibrio phage pVa-8, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KY658675	Vibrio phage H20, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	AJ312240	Bacteriophage PSA complete genome	16245-16276	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581095	Vibrio phage pVa-1, complete genome	2485-2516	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581099	Vibrio phage Strym, complete genome	2484-2515	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	MK672801	Vibrio phage Va_90-11-287_p41_T265, complete genome	15699-15730	9	0.719
NC_009665_2	2.74\|3865227\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865227-3865258	32	KX581100	Vibrio phage pVa-7, complete genome	2485-2516	9	0.719
NC_009665_2	2.77\|3865407\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865407-3865438	32	MK814760	Gordonia phage Forza, complete genome	91105-91136	9	0.719
NC_009665_2	2.77\|3865407\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865407-3865438	32	MK894436	Gordonia phage Boopy, complete genome	91188-91219	9	0.719
NC_009665_2	2.4\|3861026\|32\|NC_009665\|CRISPRCasFinder,CRT	3861026-3861057	32	MN481366	Escherichia phage vB_EcoP_PHB20, complete genome	27944-27975	10	0.688
NC_009665_2	2.4\|3861026\|32\|NC_009665\|CRISPRCasFinder,CRT	3861026-3861057	32	NC_048082	Enterobacteria phage vB_EcoP_IME390, complete genome	27090-27121	10	0.688
NC_009665_2	2.27\|3862406\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862406-3862437	32	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	42729-42760	10	0.688
NC_009665_2	2.27\|3862406\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862406-3862437	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	44006-44037	10	0.688
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	7768-7799	10	0.688
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	612659-612690	10	0.688
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	441217-441248	10	0.688
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	499519-499550	10	0.688
NC_009665_2	2.31\|3862646\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862646-3862677	32	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	101264-101295	10	0.688
NC_009665_2	2.41\|3863246\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863246-3863277	32	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	358855-358886	10	0.688
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	117238-117269	10	0.688
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	117522-117553	10	0.688
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	128238-128269	10	0.688
NC_009665_2	2.50\|3863786\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3863786-3863817	32	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	162675-162706	10	0.688
NC_009665_2	2.58\|3864266\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864266-3864297	32	KU160494	Vibrio phage vB_VmeM-32, complete genome	110186-110217	10	0.688
NC_009665_2	2.59\|3864326\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864326-3864357	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1408276-1408307	10	0.688
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	11974-12006	10	0.697
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	23973-24005	10	0.697
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	31155-31187	10	0.697
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	21132-21164	10	0.697
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	28349-28381	10	0.697
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_008442	Borrelia duttonii plasmid DNA, complete sequence, strain: Ly	30420-30452	10	0.697
NC_009665_2	2.65\|3864687\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864687-3864718	32	NZ_CP024852	Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence	165394-165425	10	0.688
NC_009665_2	2.65\|3864687\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864687-3864718	32	NC_025139	Escherichia coli plasmid pH2291-144, complete sequence	68603-68634	10	0.688
NC_009665_2	2.65\|3864687\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864687-3864718	32	NZ_CP011630	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-49, complete sequence	44255-44286	10	0.688
NC_009665_2	2.65\|3864687\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864687-3864718	32	NC_014615	Escherichia coli plasmid pETN48, complete sequence	103689-103720	10	0.688
NC_009665_2	2.75\|3865287\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865287-3865318	32	MT774386	CrAssphage cr110_1, complete genome	81815-81846	10	0.688
NC_009665_2	2.82\|3865707\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865707-3865738	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	295945-295976	10	0.688
NC_009665_2	2.83\|3865767\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865767-3865798	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1933553-1933584	10	0.688
NC_009665_2	2.83\|3865767\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3865767-3865798	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	191886-191917	10	0.688
NC_009665_2	2.30\|3862586\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3862586-3862617	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	491189-491220	11	0.656
NC_009665_2	2.59\|3864326\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864326-3864357	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	124159-124190	11	0.656
NC_009665_2	2.59\|3864326\|32\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864326-3864357	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	394483-394514	11	0.656
NC_009665_2	2.63\|3864566\|33\|NC_009665\|CRISPRCasFinder,CRT,PILER-CR	3864566-3864598	33	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	7730-7762	11	0.667

1. spacer 2.10|3861386|32|NC_009665|CRISPRCasFinder,CRT matches to NC_009038 (Shewanella baltica OS155 plasmid pSbal04, complete sequence) position: , mismatch: 0, identity: 1.0

tacaaggtcttgctggcctagatggtcaggat	CRISPR spacer
tacaaggtcttgctggcctagatggtcaggat	Protospacer
********************************

2. spacer 2.25|3862286|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_009038 (Shewanella baltica OS155 plasmid pSbal04, complete sequence) position: , mismatch: 1, identity: 0.969

gggaacggttctcaagagaagtctcggtaaca	CRISPR spacer
gggaacggttctcgagagaagtctcggtaaca	Protospacer
*************.******************

3. spacer 2.35|3862886|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 1, identity: 0.969

tagtagaacaacggatactctttcttgcctaa	CRISPR spacer
tagtagaacaacggataatctttcttgcctaa	Protospacer
***************** **************

4. spacer 2.3|3860966|32|NC_009665|CRISPRCasFinder,CRT matches to NC_011665 (Shewanella baltica OS223 plasmid pS22303, complete sequence) position: , mismatch: 2, identity: 0.938

ttgtgaaatgctgtttgttacaaagcctgtca	CRISPR spacer
tcgtgacatgctgtttgttacaaagcctgtca	Protospacer
*.**** *************************

5. spacer 2.69|3864927|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MG592561 (Vibrio phage 1.191.O._10N.286.52.B4, partial genome) position: , mismatch: 3, identity: 0.906

ttattagcggaactgaaaaggccaccgcttgg	CRISPR spacer
tgattagcggaactgaaaaggcgatcgcttgg	Protospacer
* ******************** *.*******

6. spacer 2.41|3863246|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 4, identity: 0.875

gacggtgatttctttcgggctgttgtacggac	CRISPR spacer
tacggtaatttcttttgggctgttgtacgggc	Protospacer
 *****.********.**************.*

7. spacer 2.42|3863306|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MN855786 (Bacteriophage sp. isolate 70, complete genome) position: , mismatch: 5, identity: 0.844

-ctggccgtttaacactggattttgtgcttgaa	CRISPR spacer
acctgcc-tttaacactgcattttgtgcttgta	Protospacer
 *. *** ********** ************ *

8. spacer 2.48|3863666|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_041884 (Acinetobacter phage vB_AbaM_ME3, complete genome) position: , mismatch: 6, identity: 0.812

acagttttaaatcttatgattgtcgtaattct----	CRISPR spacer
acagtcttaaatcttatgatcgt----attcttgta	Protospacer
*****.**************.**    *****

9. spacer 2.7|3861206|32|NC_009665|CRISPRCasFinder,CRT matches to HQ634187 (Cyanophage KBS-S-2A genomic sequence) position: , mismatch: 7, identity: 0.781

gtaagccctagctatgctggggctttttttat	CRISPR spacer
acgagccctagcattgctggggcttttttact	Protospacer
...*********  ***************  *

10. spacer 2.7|3861206|32|NC_009665|CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 7, identity: 0.781

gtaagccctagctatgctggggctttttttat	CRISPR spacer
taaagccccagctatgcaggggcttttgtatt	Protospacer
  ******.******** ********* *  *

11. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 7, identity: 0.781

-actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
cgcttgt-cggcagtgatgaacatcttcggcag	Protospacer
 .** .* **** .******************.

12. spacer 2.24|3862226|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038263 (Acinetobacter baumannii strain LEV1449/17Ec plasmid pEC_gr13, complete sequence) position: , mismatch: 7, identity: 0.781

cttgatgatgtttttggcgtagctggttggca	CRISPR spacer
cttgctgacgtttttggcgtagctcatccgct	Protospacer
**** ***.*************** .*. **

13. spacer 2.38|3863066|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 7, identity: 0.781

tgttaatgtgtctttttgttgcttaacttctg	CRISPR spacer
tataaagttgtctatttcttgcttaacttcta	Protospacer
*.* **  ***** *** *************.

14. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to NZ_CP014769 (Hymenobacter sp. PAMC 26554 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
aacggcaccggtatgatgaacatcttcggcga	Protospacer
* ....** * *******************.*

15. spacer 2.24|3862226|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to CP033546 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence) position: , mismatch: 8, identity: 0.75

cttgatgatgtttttggcgtagctggttggca	CRISPR spacer
cttgctgacgtttttggcgtagcccatccgct	Protospacer
**** ***.**************. .*. **

16. spacer 2.25|3862286|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MG770379 (Klebsiella virus vB_KpnM_KpS110, complete genome) position: , mismatch: 8, identity: 0.75

gggaacggttctcaagagaagtct----cggtaaca	CRISPR spacer
tggaaaggttctcaacagaagtctgcgcctgt----	Protospacer
 **** ********* ********    * **

17. spacer 2.34|3862826|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MN693111 (Marine virus AFVG_25M354, complete genome) position: , mismatch: 8, identity: 0.75

tattttaataagttcctcatgctcttcattga	CRISPR spacer
ctttgcgataagttcttcatgctctccattta	Protospacer
. ** ..********.*********.**** *

18. spacer 2.35|3862886|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_024792 (Bacillus phage Bobb, complete genome) position: , mismatch: 8, identity: 0.75

tagtagaacaacggatactctttcttgcctaa	CRISPR spacer
tcatagaggaacggatactctttctttgcttc	Protospacer
* .****. *****************  **

19. spacer 2.38|3863066|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MN693032 (Marine virus AFVG_117M42, complete genome) position: , mismatch: 8, identity: 0.75

tgttaatgtgtctttttgttgcttaacttctg	CRISPR spacer
acttcacctgtctttttgttgcttattttctc	Protospacer
  ** *. ***************** .****

20. spacer 2.45|3863486|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcgatttgcgccccgcgttggcttagatagt	CRISPR spacer
ggacggttgcgccccacgttggctcagatagg	Protospacer
 *  . *********.********.******

21. spacer 2.48|3863666|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to HQ331142 (Salmonella phage S16, complete genome) position: , mismatch: 8, identity: 0.75

acagttttaaatcttatgattgtcgtaattct	CRISPR spacer
tgaaactaaaatcttttgattgtcgtaattca	Protospacer
  *. .* ******* ***************

22. spacer 2.48|3863666|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KJ000058 (Salmonella phage STP4-a, complete genome) position: , mismatch: 8, identity: 0.75

acagttttaaatcttatgattgtcgtaattct	CRISPR spacer
tgaaactaaaatcttttgattgtcgtaattca	Protospacer
  *. .* ******* ***************

23. spacer 2.48|3863666|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 8, identity: 0.75

acagttttaaatcttatgattgtcgtaattct	CRISPR spacer
ctacttttaaatcttatgagtgttgtaactaa	Protospacer
 .* *************** ***.****.*

24. spacer 2.58|3864266|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045340 (Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcaataccaatgtatttggtgttcaccgta	CRISPR spacer
ttttgatatcaatgtatttggtgttcaacgtc	Protospacer
.. ..***.****************** ***

25. spacer 2.72|3865107|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 8, identity: 0.75

aaatatttacgggtacagtaatatcaacaagt	CRISPR spacer
atatatttactggtactgtaatatctaggatg	Protospacer
* ******** ***** ******** * .*

26. spacer 2.79|3865527|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047896 (Sphingomonas sp. C33 plasmid pC33, complete sequence) position: , mismatch: 8, identity: 0.75

tcacgcatggtcggcagaccactttgataggt	CRISPR spacer
ttttgattggtcggcaggccacttcgatagtt	Protospacer
*. .*  **********.******.***** *

27. spacer 2.80|3865587|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 8, identity: 0.75

atttatcagtttatgtggttgtggtaatttta	CRISPR spacer
ttacacaactttaagtgcttgtggtaatttta	Protospacer
 * .*. * **** *** **************

28. spacer 2.81|3865647|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134431 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 22) position: , mismatch: 8, identity: 0.75

tcaatcgcaatcactgcgatgtgcttccactt	CRISPR spacer
ataaagaaaagcactgcgatgtgcttctactt	Protospacer
 .**  . ** ****************.****

29. spacer 2.82|3865707|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK368614 (Vibrio phage 2 TSL-2019, complete genome) position: , mismatch: 8, identity: 0.75

gaagatattgaagccgccaaacgattgatggc	CRISPR spacer
aaggttattgaagccgcaaaacgtttgacaga	Protospacer
.*.* ************ ***** ****..*

30. spacer 2.4|3861026|32|NC_009665|CRISPRCasFinder,CRT matches to NC_015271 (Salmonella phage Vi06 complete sequence) position: , mismatch: 9, identity: 0.719

tgctttgatgccttttagcatctccgctaact	CRISPR spacer
tgctttgatgccttggagcatctcccacgcag	Protospacer
**************  *********  ..

31. spacer 2.13|3861566|32|NC_009665|CRISPRCasFinder,CRT matches to KY775453 (Salmonella phage Stp1 contig.00003 genomic sequence) position: , mismatch: 9, identity: 0.719

tttgattattgggtttgctggtttgttttatt	CRISPR spacer
cgccgtttttggttttgctggtttgtttgctt	Protospacer
. . .** **** ***************  **

32. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to MN038176 (Bacillus phage Phireball, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

33. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to NC_031006 (Bacillus phage DIGNKC, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

34. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

35. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

36. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to MF288917 (Bacillus phage PPIsBest, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

37. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

38. spacer 2.14|3861626|32|NC_009665|CRISPRCasFinder,CRT matches to KU737351 (Bacillus phage NotTheCreek, complete genome) position: , mismatch: 9, identity: 0.719

actaatacggctatgatgaacatcttcggcaa	CRISPR spacer
acttatacggctattatgaacatgtccatatt	Protospacer
*** ********** ******** *.*.

39. spacer 2.21|3862046|32|NC_009665|CRISPRCasFinder,CRT matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 9, identity: 0.719

attctcttttgcagcaaatgaattctttattg	CRISPR spacer
attctcttctggagcaaatgaataaggtcagg	Protospacer
********.** ***********    *   *

40. spacer 2.26|3862346|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

ggtttgcataccgcatcggcaatttggcttaa	CRISPR spacer
ttcttgcgtaccgcatcggcaatctggttgcc	Protospacer
  .****.***************.***.*

41. spacer 2.27|3862406|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 9, identity: 0.719

ttaccgtggtgcgcggcgaaacctccgccaac	CRISPR spacer
cggtcgtggtgcgcgccgacacctccggcgat	Protospacer
. ..*********** *** ******* *.*.

42. spacer 2.29|3862526|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.719

cagaaatatcgcgcgcgcggtatcggcgttct	CRISPR spacer
cgtcagcgccgcgcgcgcggtaacggggttct	Protospacer
*.  *....************* *** *****

43. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
ttatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.* ***** ******* *********  *...

44. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
ttatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.* ***** ******* *********  *...

45. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
acgcgtccaatgcgtttcattccattcggact	Protospacer
 ..** ***********.*********  *.

46. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
acgcgtccaatgcgtttcattccattcggact	Protospacer
 ..** ***********.*********  *.

47. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
acgcgtccaatgcgtttcattccattcggact	Protospacer
 ..** ***********.*********  *.

48. spacer 2.55|3864086|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MG945466 (UNVERIFIED: Microviridae sp. isolate 243-1711, complete genome) position: , mismatch: 9, identity: 0.719

tacataaccggtcgaatttggagcataatatc	CRISPR spacer
agaagaaccgggcgaattttgagcataagaat	Protospacer
 . * ****** ******* ******** * .

49. spacer 2.58|3864266|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MF001361 (Enterococcus phage EF5, partial genome) position: , mismatch: 9, identity: 0.719

ccgcaataccaatgtatttggtgttcaccgta	CRISPR spacer
tagcaataccaatgtatttagttttactatta	Protospacer
. *****************.** **  .  **

50. spacer 2.58|3864266|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MF001358 (Enterococcus phage EF1, partial genome) position: , mismatch: 9, identity: 0.719

ccgcaataccaatgtatttggtgttcaccgta	CRISPR spacer
tagcaataccaatgtatttagttttactatta	Protospacer
. *****************.** **  .  **

51. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.727

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
acttaaataacaaaatcgacaaagtaagggacg	Protospacer
..  * ******* ******** *******.*

52. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 9, identity: 0.727

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
acttaaataacaaaatcgacaaagtaagggacg	Protospacer
..  * ******* ******** *******.*

53. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011265 (Borrelia duttonii Ly plasmid pl27, complete sequence) position: , mismatch: 9, identity: 0.727

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
acttaaataacaaaatcgacaaagtaagggacg	Protospacer
..  * ******* ******** *******.*

54. spacer 2.66|3864747|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 9, identity: 0.719

atttctcattcgaatcgcgcgcgacttccatc	CRISPR spacer
gcgacacattcgcatcgcgcgcgacatccttg	Protospacer
..  * ****** ************ *** *

55. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581091 (Vibrio phage Cla, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

56. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581096 (Vibrio phage pVa-5, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

57. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK672804 (Vibrio phage Va_178/90_p41, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

58. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658673 (Vibrio phage H2 PGK-2017, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

59. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581093 (Vibrio phage Pel, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

60. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581097 (Vibrio phage pVa-6, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

61. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658677 (Vibrio phage P3, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

62. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581098 (Vibrio phage VaK, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

63. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658674 (Vibrio phage H8, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

64. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658676 (Vibrio phage P2, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

65. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581090 (Vibrio phage Her, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

66. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658678 (Vibrio phage pVa-3, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

67. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658679 (Vibrio phage pVa-4, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

68. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK672800 (Vibrio phage Va_90-11-287_p41_Ba35, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

69. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK672799 (Vibrio phage Va_90-11-287_p41, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

70. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581092 (Vibrio phage Len, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

71. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581094 (Vibrio phage pVa-2, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

72. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK672803 (Vibrio phage Va_91-7-154_p41, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

73. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658680 (Vibrio phage pVa-8, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

74. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KY658675 (Vibrio phage H20, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

75. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
gcccctatcaatccgataattgctactgtcac	Protospacer
***** ****** ********** *  .  *

76. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581095 (Vibrio phage pVa-1, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

77. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581099 (Vibrio phage Strym, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

78. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK672801 (Vibrio phage Va_90-11-287_p41_T265, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

79. spacer 2.74|3865227|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KX581100 (Vibrio phage pVa-7, complete genome) position: , mismatch: 9, identity: 0.719

gccccaatcaatgcgataattgcaaagaaaag	CRISPR spacer
tttcagaccactgcgataaatgcaaagaaaaa	Protospacer
 ..* .*.** ******** ***********.

80. spacer 2.77|3865407|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK814760 (Gordonia phage Forza, complete genome) position: , mismatch: 9, identity: 0.719

gcaaggacagaagagcgctctcaagcactgga	CRISPR spacer
gaggatgcagaacagcgctctcgagcactggc	Protospacer
* ... .***** *********.********

81. spacer 2.77|3865407|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MK894436 (Gordonia phage Boopy, complete genome) position: , mismatch: 9, identity: 0.719

gcaaggacagaagagcgctctcaagcactgga	CRISPR spacer
gaggatgcagaacagcgctctcgagcactggc	Protospacer
* ... .***** *********.********

82. spacer 2.4|3861026|32|NC_009665|CRISPRCasFinder,CRT matches to MN481366 (Escherichia phage vB_EcoP_PHB20, complete genome) position: , mismatch: 10, identity: 0.688

tgctttgatgccttttagcatctccgctaact	CRISPR spacer
agctttgatgccttgaagcatctcccacgcag	Protospacer
 *************  *********  ..

83. spacer 2.4|3861026|32|NC_009665|CRISPRCasFinder,CRT matches to NC_048082 (Enterobacteria phage vB_EcoP_IME390, complete genome) position: , mismatch: 10, identity: 0.688

tgctttgatgccttttagcatctccgctaact	CRISPR spacer
agctttgatgccttgaagcatctcccacgcag	Protospacer
 *************  *********  ..

84. spacer 2.27|3862406|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttaccgtggtgcgcggcgaaacctccgccaac	CRISPR spacer
cggccgtgctgcgcggcgaaaccgccttctgg	Protospacer
. .***** ************** ** .* .

85. spacer 2.27|3862406|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 10, identity: 0.688

ttaccgtggtgcgcggcgaaacctccgccaac	CRISPR spacer
cccgggtggcgcgcggcgaaacccccgcgccc	Protospacer
..   ****.*************.****   *

86. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
tgatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.  ***** ******* *********  *...

87. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
tgatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.  ***** ******* *********  *...

88. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 10, identity: 0.688

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
tgatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.  ***** ******* *********  *...

89. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 10, identity: 0.688

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
tgatgcggtggtcgaattcgaaattgtagcgg	Protospacer
.  ***** ******* *********  *...

90. spacer 2.31|3862646|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 10, identity: 0.688

gtaccagcgacttgctattggtttttgttggt	CRISPR spacer
tggctcattacttgctattggttttggctggt	Protospacer
  .*. .. **************** *.****

91. spacer 2.41|3863246|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 10, identity: 0.688

gacggtgatttctttcgggctgttgtacggac	CRISPR spacer
gacggtgatttctttggggccgtcacttcccc	Protospacer
*************** ****.**... .   *

92. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 10, identity: 0.688

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
ctttttccaatgacttttattccattcttcat	Protospacer
.* .  ******  ***************

93. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
ctttttccaatgacttttattccattcttcat	Protospacer
.* .  ******  ***************

94. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
ctttttccaatgacttttattccattcttcat	Protospacer
.* .  ******  ***************

95. spacer 2.50|3863786|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 10, identity: 0.688

ttacggccaatgcgttttattccattcttatg	CRISPR spacer
ctttttccaatgacttttattccattcttcat	Protospacer
.* .  ******  ***************

96. spacer 2.58|3864266|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to KU160494 (Vibrio phage vB_VmeM-32, complete genome) position: , mismatch: 10, identity: 0.688

ccgcaataccaatgtatttggtgttcaccgta	CRISPR spacer
tgagaataccaagctatttggtgttcattcaa	Protospacer
. . ********  *************..  *

97. spacer 2.59|3864326|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 10, identity: 0.688

agagaattatcgggttgctgaacaacgcataa	CRISPR spacer
ctctgattatcggcttcctgaacaacgcactg	Protospacer
    .******** ** ************. .

98. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011245 (Borrelia duttonii Ly plasmid pl28, complete sequence) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

99. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

100. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

101. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011262 (Borrelia duttonii Ly plasmid pl31, complete sequence) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

102. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011262 (Borrelia duttonii Ly plasmid pl31, complete sequence) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

103. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_008442 (Borrelia duttonii plasmid DNA, complete sequence, strain: Ly) position: , mismatch: 10, identity: 0.697

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggacg	Protospacer
.     ******* ******** *******.*

104. spacer 2.65|3864687|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024852 (Escherichia coli strain AR_0006 plasmid tig00000164, complete sequence) position: , mismatch: 10, identity: 0.688

ctgagattaacgtcatatcgcaacctacagag	CRISPR spacer
tgctactcaacgtcatatcgcaacagacagaa	Protospacer
.   . *.****************  *****.

105. spacer 2.65|3864687|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_025139 (Escherichia coli plasmid pH2291-144, complete sequence) position: , mismatch: 10, identity: 0.688

ctgagattaacgtcatatcgcaacctacagag	CRISPR spacer
tgctactcaacgtcatatcgcaacagacagaa	Protospacer
.   . *.****************  *****.

106. spacer 2.65|3864687|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011630 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-49, complete sequence) position: , mismatch: 10, identity: 0.688

ctgagattaacgtcatatcgcaacctacagag	CRISPR spacer
cgttaccaaacgtcatatcgccaccgacagaa	Protospacer
*   . . ************* *** *****.

107. spacer 2.65|3864687|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_014615 (Escherichia coli plasmid pETN48, complete sequence) position: , mismatch: 10, identity: 0.688

ctgagattaacgtcatatcgcaacctacagag	CRISPR spacer
tgctactcaacgtcatatcgcaacagacagaa	Protospacer
.   . *.****************  *****.

108. spacer 2.75|3865287|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 10, identity: 0.688

tttgttggcgctgcattaaaaaatccgtgttt	CRISPR spacer
gttgttggcgctgcattaggaaataacactaa	Protospacer
 *****************..****     *

109. spacer 2.82|3865707|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 10, identity: 0.688

gaagatattgaagccgccaaacgattgatggc	CRISPR spacer
tcgtccatggaagccgccgaacgattgatgct	Protospacer
  .  .** *********.*********** .

110. spacer 2.83|3865767|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 10, identity: 0.688

ttgagcggtcacagtgttcagttcagcgtatt	CRISPR spacer
gcgcgcggtcacggtgttcaggtcagcaccgc	Protospacer
 .* ********.******** *****..  .

111. spacer 2.83|3865767|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.688

ttgagcggtcacagtgttcagttcagcgtatt	CRISPR spacer
gcgcgcggtcacggtgttcaggtcagcaccgc	Protospacer
 .* ********.******** *****..  .

112. spacer 2.30|3862586|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 11, identity: 0.656

ctttgcggaggtcgaaatcgaaattgacgtaa	CRISPR spacer
tgatgcggtggtcgaattcgaaattgtaacgg	Protospacer
.  ***** ******* *********  ....

113. spacer 2.59|3864326|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

agagaattatcgggttgctgaacaacgcataa	CRISPR spacer
ccctcatcatcggggtgctgaacaacgccctg	Protospacer
     **.****** ************* . .

114. spacer 2.59|3864326|32|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 11, identity: 0.656

agagaattatcgggttgctgaacaacgcataa	CRISPR spacer
ccctcatcatcggggtgctgaacaacgcgctg	Protospacer
     **.****** *************.. .

115. spacer 2.63|3864566|33|NC_009665|CRISPRCasFinder,CRT,PILER-CR matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 11, identity: 0.667

gtggatataacaacatcgacaacgtaaggggct	CRISPR spacer
aacttgataacaaaatcgacaaagtaagggaag	Protospacer
.     ******* ******** *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

642270 : 710347

Cedratvirus(33.33%)

integrase,transposase

attL 633047:633061|attR 692218:692232

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
633047:633061	attL	NA	NA	NA	NA
WP_006083191.1\|642270_643593_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_006083190.1\|643576_645130_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_006083189.1\|645122_647204_+	hypothetical protein	NA	NA	NA	NA
WP_006083188.1\|647203_647731_+	hypothetical protein	NA	NA	NA	NA
WP_006083187.1\|647810_648248_+	hypothetical protein	NA	NA	NA	NA
WP_006083186.1\|648244_650398_+	AAA family ATPase	A0A285PXL3	Cedratvirus	1.3e-26	27.7
WP_006083185.1\|651162_651441_+	hypothetical protein	NA	NA	NA	NA
WP_006079577.1\|651437_652547_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083183.1\|658563_659733_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	1.6e-79	41.6
WP_006083178.1\|660387_661497_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083180.1\|661751_662429_+	hypothetical protein	NA	NA	NA	NA
WP_006083179.1\|662548_663406_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_006083178.1\|663513_664623_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083177.1\|665080_665335_-	hypothetical protein	NA	NA	NA	NA
WP_006083176.1\|665666_666068_+	DUF4354 family protein	NA	NA	NA	NA
WP_086012034.1\|666131_666293_+	thyroid hormone receptor interactor 11-like protein	NA	NA	NA	NA
WP_006083175.1\|666440_668729_+	hypothetical protein	NA	NA	NA	NA
WP_006083174.1\|669782_676373_+	insecticidal toxin complex/plasmid virulence protein	NA	NA	NA	NA
WP_006083173.1\|676465_681088_+	hypothetical protein	NA	NA	NA	NA
WP_006083172.1\|681392_684269_+	RHS repeat protein	NA	NA	NA	NA
WP_006083171.1\|685086_687951_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_006083170.1\|688114_688675_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.8e-31	41.4
WP_006083169.1\|692086_692533_-	hypothetical protein	NA	NA	NA	NA
692218:692232	attR	NA	NA	NA	NA
WP_006083168.1\|692519_693143_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012088171.1\|693477_696420_-	hypothetical protein	NA	NA	NA	NA
WP_012088172.1\|697295_700202_+	hypothetical protein	NA	NA	NA	NA
WP_006087485.1\|701548_702118_+	hypothetical protein	NA	NA	NA	NA
WP_006083164.1\|702181_702631_+	hypothetical protein	NA	NA	NA	NA
WP_006083163.1\|702633_705480_+	pilus assembly protein PapC	NA	NA	NA	NA
WP_006083162.1\|705472_706207_+	hypothetical protein	NA	NA	NA	NA
WP_006083161.1\|706208_707216_+	hypothetical protein	NA	NA	NA	NA
WP_006083160.1\|708058_708610_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_006083112.1\|709246_710347_-\|transposase	ISAs1-like element ISSba1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

841255 : 891901

Vibrio_phage(20.0%)

integrase,protease,terminase,transposase,portal

attL 837615:837630|attR 891592:891607

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
837615:837630	attL	NA	NA	NA	NA
WP_006083055.1\|841255_842608_-\|protease	DegQ family serine endoprotease	A0A1B1IRD3	uncultured_Mediterranean_phage	4.4e-09	27.6
WP_012088238.1\|843021_844134_+	cell division protein ZapE	NA	NA	NA	NA
WP_012088240.1\|844424_844853_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_006083052.1\|844867_845260_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_006083051.1\|845413_845602_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_012088242.1\|845674_846970_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	1.9e-65	36.7
WP_012088243.1\|847094_847751_+	sel1 repeat family protein	NA	NA	NA	NA
WP_006083048.1\|847790_850214_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.1e-62	32.3
WP_006083047.1\|850214_850955_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012088244.1\|851099_852542_-	MFS transporter	NA	NA	NA	NA
WP_012088245.1\|852779_853523_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_006083044.1\|853736_854132_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_006083043.1\|854140_854446_+	primosomal replication protein N	NA	NA	NA	NA
WP_006083042.1\|854458_854686_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_006086059.1\|854722_855175_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_012088246.1\|855428_857627_-	S46 family peptidase	NA	NA	NA	NA
WP_006083039.1\|857752_859159_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	2.1e-179	70.8
WP_012088247.1\|859262_860339_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	9.2e-26	28.4
WP_012088248.1\|860605_861043_+\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	1.6e-21	40.0
WP_006083037.1\|861500_861965_-	chemotaxis protein CheX	NA	NA	NA	NA
WP_012088249.1\|862815_865008_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_006086056.1\|865108_865783_+	PKHD-type hydroxylase	A0A127KM56	Cyanophage	2.1e-15	32.5
WP_012088251.1\|866220_866706_+	hypothetical protein	NA	NA	NA	NA
WP_041411001.1\|866836_867301_+	hypothetical protein	NA	NA	NA	NA
WP_011847802.1\|867499_867769_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_012088252.1\|867765_868296_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012088253.1\|868851_869625_+	hypothetical protein	NA	NA	NA	NA
WP_012088254.1\|869614_870019_+	hypothetical protein	NA	NA	NA	NA
WP_041411002.1\|870306_870600_-	hypothetical protein	A0A067ZIA5	Vibrio_phage	6.0e-12	38.8
WP_012088256.1\|870596_870917_-	hypothetical protein	K7PKY8	Enterobacterial_phage	1.3e-12	38.3
WP_012088257.1\|870913_871522_-	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	8.3e-08	37.9
WP_012088258.1\|871518_871749_-	hypothetical protein	NA	NA	NA	NA
WP_012088259.1\|871745_872024_-	hypothetical protein	NA	NA	NA	NA
WP_012088260.1\|872024_872318_-	hypothetical protein	NA	NA	NA	NA
WP_006082041.1\|872348_872696_-	hypothetical protein	NA	NA	NA	NA
WP_012088261.1\|872721_872982_-	hypothetical protein	NA	NA	NA	NA
WP_012088262.1\|872978_873332_-	hypothetical protein	NA	NA	NA	NA
WP_012088263.1\|873942_874230_+	hypothetical protein	NA	NA	NA	NA
WP_012088264.1\|874351_874777_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041411004.1\|874916_875333_+	hypothetical protein	NA	NA	NA	NA
WP_012088265.1\|875504_876422_+	hypothetical protein	NA	NA	NA	NA
WP_041411005.1\|876504_877104_+	hypothetical protein	NA	NA	NA	NA
WP_041411387.1\|877505_878201_-	helix-turn-helix transcriptional regulator	R9TNM0	Vibrio_phage	2.3e-62	49.8
WP_012088268.1\|878287_878491_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_012088269.1\|878522_879131_+	hypothetical protein	NA	NA	NA	NA
WP_012088270.1\|879295_880045_+	transcriptional regulator	Q8HA96	Salmonella_phage	8.4e-34	46.1
WP_012088271.1\|880041_880728_+	replication protein P	I6PBN0	Cronobacter_phage	2.0e-10	28.5
WP_012088272.1\|880717_881974_+\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	5.0e-47	33.9
WP_012088273.1\|882029_882248_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012088274.1\|882234_882588_+	hypothetical protein	NA	NA	NA	NA
WP_012088275.1\|882596_883211_+	oligoribonuclease	M4M9I5	Vibrio_phage	3.7e-64	63.0
WP_012088276.1\|884131_884656_+	lysozyme	A0A1S5R1I9	Pseudomonas_phage	1.0e-22	38.6
WP_012088277.1\|884645_885149_+	hypothetical protein	NA	NA	NA	NA
WP_012088278.1\|885259_885595_+	hypothetical protein	NA	NA	NA	NA
WP_012088279.1\|885548_886082_+	DNA packaging protein	O64316	Escherichia_phage	3.1e-35	49.1
WP_012088280.1\|886056_888054_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	2.6e-191	49.8
WP_012088281.1\|888083_888290_+	hypothetical protein	NA	NA	NA	NA
WP_012088282.1\|888339_889914_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	4.4e-125	48.2
WP_012088283.1\|889885_891901_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	4.0e-208	60.4
891592:891607	attR	NA	NA	NA	NA

DBSCAN-SWA_3

896353 : 908180

Vibrio_phage(62.5%)

integrase

attL 905980:905992|attR 910453:910465

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012088292.1\|896353_900274_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	2.0e-38	36.6
WP_012088293.1\|900312_900684_+	hypothetical protein	A0A2I7QS24	Vibrio_phage	6.6e-24	50.5
WP_012088294.1\|900691_903130_+	hypothetical protein	A0A2I7QXQ4	Vibrio_phage	6.0e-299	63.7
WP_012088295.1\|903142_904087_+	hypothetical protein	A0A2I7S8P4	Vibrio_phage	9.5e-51	36.1
WP_012088296.1\|904079_904385_+	hypothetical protein	A0A2I7QRU3	Vibrio_phage	7.9e-07	36.4
WP_012088297.1\|904381_906142_+	hypothetical protein	A0A088C4B7	Shewanella_sp._phage	4.0e-143	59.4
905980:905992	attL	NA	NA	NA	NA
WP_011847761.1\|906167_906380_+	hypothetical protein	A0A088C533	Shewanella_sp._phage	3.2e-15	64.3
WP_012088298.1\|906414_907065_+	hypothetical protein	NA	NA	NA	NA
WP_012088299.1\|907115_908180_-\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	1.9e-116	57.5
910453:910465	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2029675 : 2040835

Escherichia_phage(33.33%)

integrase,transposase

attL 2036893:2036907|attR 2049798:2049812

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041411108.1\|2029675_2030371_+\|integrase	integrase	A0A2D1GLL1	Escherichia_phage	7.0e-19	32.0
WP_012088860.1\|2030740_2031700_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	3.2e-54	40.4
WP_012088861.1\|2031988_2032852_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012088862.1\|2032830_2033949_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_080514487.1\|2034120_2034300_+	hypothetical protein	NA	NA	NA	NA
WP_012088863.1\|2034300_2034567_+	hypothetical protein	NA	NA	NA	NA
WP_012088864.1\|2034688_2034967_+	hypothetical protein	NA	NA	NA	NA
WP_012088865.1\|2035047_2035497_+	hypothetical protein	NA	NA	NA	NA
WP_049770353.1\|2035471_2035981_+	hypothetical protein	NA	NA	NA	NA
WP_012088867.1\|2036039_2036648_+	hypothetical protein	NA	NA	NA	NA
WP_041411110.1\|2036663_2037092_+	DUF4844 domain-containing protein	NA	NA	NA	NA
2036893:2036907	attL	NA	NA	NA	NA
WP_012088869.1\|2037194_2037560_+	hypothetical protein	NA	NA	NA	NA
WP_012088870.1\|2037621_2037912_+	hypothetical protein	NA	NA	NA	NA
WP_157600318.1\|2038031_2038616_+	DUF998 domain-containing protein	NA	NA	NA	NA
WP_012088872.1\|2038862_2039948_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_012088873.1\|2039944_2040835_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.5e-23	29.9
2049798:2049812	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2204584 : 2219768

Vibrio_phage(25.0%)

integrase,transposase

attL 2200055:2200068|attR 2217103:2217116

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2200055:2200068	attL	NA	NA	NA	NA
WP_012088950.1\|2204584_2205532_+	DNA ligase	A0A1X9VNU1	Mimivirus	2.1e-29	31.9
WP_006086382.1\|2205576_2206647_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.0e-69	41.0
WP_086012318.1\|2206837_2207996_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.2
WP_012088951.1\|2208568_2209753_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	2.5e-69	39.9
WP_012088952.1\|2209742_2209973_-	excisionase	NA	NA	NA	NA
WP_012088953.1\|2209969_2210326_-	hypothetical protein	A0A2D0YGQ8	Vibrio_phage	1.2e-22	52.6
WP_012088954.1\|2210504_2210819_-	hypothetical protein	NA	NA	NA	NA
WP_012088955.1\|2210815_2211136_-	hypothetical protein	K7PKY8	Enterobacterial_phage	1.9e-11	38.3
WP_012088956.1\|2211132_2211363_-	hypothetical protein	NA	NA	NA	NA
WP_012088957.1\|2211359_2211638_-	hypothetical protein	NA	NA	NA	NA
WP_012088958.1\|2211638_2211917_-	hypothetical protein	NA	NA	NA	NA
WP_012088959.1\|2211913_2212978_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.7e-29	38.2
WP_012088960.1\|2212974_2213604_-	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	1.4e-29	37.8
WP_012088961.1\|2213634_2213982_-	hypothetical protein	NA	NA	NA	NA
WP_012088962.1\|2214108_2214471_-	hypothetical protein	NA	NA	NA	NA
WP_012088963.1\|2215126_2215792_-	LexA family transcriptional regulator	A0A1V0E8B5	Vibrio_phage	7.3e-66	55.6
WP_012088964.1\|2215904_2216195_+	helix-turn-helix transcriptional regulator	A0A1V0E8C7	Vibrio_phage	8.5e-19	64.2
WP_012088965.1\|2216226_2216850_+	hypothetical protein	NA	NA	NA	NA
WP_012088966.1\|2216855_2217182_+	hypothetical protein	NA	NA	NA	NA
2217103:2217116	attR	NA	NA	NA	NA
WP_012088967.1\|2217345_2218083_+	hypothetical protein	NA	NA	NA	NA
WP_012088968.1\|2218227_2219085_+	transcriptional regulator	A5LH71	Enterobacteria_phage	8.6e-35	46.2
WP_012088969.1\|2219081_2219768_+	replication protein P	I6PBN0	Cronobacter_phage	2.6e-10	28.5

DBSCAN-SWA_6

2332794 : 2338025

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012089038.1\|2332794_2334087_-	DUF3596 domain-containing protein	A0A2H4JGM5	uncultured_Caudovirales_phage	2.7e-56	36.2
WP_012089039.1\|2334086_2334299_-	DNA-binding protein	NA	NA	NA	NA
WP_012089040.1\|2334402_2334750_-	hypothetical protein	Q7Y3W7	Yersinia_phage	7.1e-12	37.1
WP_012089042.1\|2334746_2335355_-	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	8.3e-08	37.9
WP_012089043.1\|2335351_2335582_-	hypothetical protein	NA	NA	NA	NA
WP_011847799.1\|2335578_2335857_-	hypothetical protein	NA	NA	NA	NA
WP_012089044.1\|2335857_2336151_-	hypothetical protein	NA	NA	NA	NA
WP_012089045.1\|2336362_2337013_-	hypothetical protein	H2BDG4	Pseudomonas_virus	9.5e-34	40.2
WP_012089046.1\|2337009_2337399_-	hypothetical protein	A0A1I9SEY3	Klebsiella_phage	3.3e-26	53.4
WP_012089047.1\|2337395_2338025_-	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	3.0e-29	37.8

DBSCAN-SWA_7

2487971 : 2499131

Shigella_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012089140.1\|2487971_2488592_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	1.9e-15	39.2
WP_012089141.1\|2488584_2489040_+	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	1.2e-14	39.0
WP_012089142.1\|2489086_2489617_+	hypothetical protein	NA	NA	NA	NA
WP_041411146.1\|2489664_2490102_+	hypothetical protein	NA	NA	NA	NA
WP_012089144.1\|2490148_2490877_-	hypothetical protein	NA	NA	NA	NA
WP_086014179.1\|2491060_2491339_+	hypothetical protein	NA	NA	NA	NA
WP_012089146.1\|2491328_2491895_+	lysozyme	A0A0A1I5L5	Burkholderia_phage	1.9e-22	41.8
WP_012089147.1\|2491891_2492476_+	hypothetical protein	NA	NA	NA	NA
WP_012089148.1\|2492572_2492797_+	hypothetical protein	NA	NA	NA	NA
WP_012089149.1\|2492793_2493129_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_012089150.1\|2493128_2493425_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	5.1e-19	53.1
WP_012089151.1\|2493427_2493997_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	4.5e-48	58.1
WP_012089152.1\|2494141_2495782_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.0e-164	63.0
WP_012089153.1\|2495781_2497368_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	2.3e-118	44.9
WP_012089154.1\|2497360_2498674_+	phage morphogenesis protein	A0A0C4UQY9	Shigella_phage	5.7e-94	41.7
WP_012089155.1\|2498678_2499131_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	3.9e-18	46.8

DBSCAN-SWA_8

2629685 : 2641230

uncultured_Caudovirales_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012089234.1\|2629685_2630957_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.3e-15	24.8
WP_011846842.1\|2631072_2631975_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006081638.1\|2632392_2633052_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	5.6e-34	43.9
WP_012089235.1\|2633121_2633511_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.8e-19	40.2
WP_012089236.1\|2633525_2633882_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_006081641.1\|2633881_2634163_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_006081642.1\|2634156_2634495_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_006081643.1\|2634639_2634762_-	hypothetical protein	NA	NA	NA	NA
WP_006087497.1\|2634781_2636068_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.8e-100	46.0
WP_006081645.1\|2636086_2636461_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	7.9e-09	37.4
WP_012089237.1\|2636453_2637785_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.4e-78	39.0
WP_011846837.1\|2637793_2638420_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012089238.1\|2638476_2641230_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-83	48.5

DBSCAN-SWA_9

2832864 : 2843166

Yellowstone_lake_phycodnavirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012089339.1\|2832864_2834583_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.5e-57	29.0
WP_006081846.1\|2834582_2835077_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_006081847.1\|2835178_2835622_-	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	3.7e-21	51.5
WP_006081848.1\|2835984_2836416_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_006081849.1\|2836614_2836782_-	hypothetical protein	NA	NA	NA	NA
WP_006081850.1\|2836999_2837197_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006081851.1\|2837310_2838216_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_006081852.1\|2838374_2838713_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_012089340.1\|2838721_2840584_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.8e-102	38.2
WP_012089341.1\|2840651_2841176_-	co-chaperone HscB	NA	NA	NA	NA
WP_006081855.1\|2841192_2841516_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	46.3
WP_006081856.1\|2841530_2841914_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.2e-51	76.6
WP_006081857.1\|2841951_2843166_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.7e-32	31.8

DBSCAN-SWA_10

3724374 : 3735495

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012089805.1\|3724374_3726999_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.8e-78	39.1
WP_012089806.1\|3727341_3727755_-	regulatory protein RecX	NA	NA	NA	NA
WP_011847432.1\|3727829_3728897_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.4e-111	61.9
WP_012089807.1\|3729281_3731852_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.9e-30	23.1
WP_006086853.1\|3732055_3733036_-	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	8.4e-34	32.7
WP_012089808.1\|3733116_3734013_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_006082610.1\|3734113_3734749_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.4e-34	49.4
WP_006086855.1\|3734745_3735495_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-71	52.2

DBSCAN-SWA_11

3764669 : 3772436

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006082639.1\|3764669_3765149_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	47.0
WP_012089823.1\|3765279_3766383_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.4e-68	39.7
WP_012089824.1\|3766706_3767363_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.1e-27	34.5
WP_086014191.1\|3767374_3768517_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.0e-51	36.0
WP_006082643.1\|3768675_3769125_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012089826.1\|3769325_3770579_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.9e-102	54.6
WP_006086878.1\|3770768_3772436_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.9e-39	28.0

DBSCAN-SWA_12

3889913 : 3901814

Escherichia_phage(27.27%)

integrase

attL 3884949:3884962|attR 3906865:3906878

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3884949:3884962	attL	NA	NA	NA	NA
WP_012089898.1\|3889913_3891182_-\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	5.2e-44	33.3
WP_012089899.1\|3891182_3891407_-	hypothetical protein	NA	NA	NA	NA
WP_012089900.1\|3891396_3892080_-	replication protein P	I6PBN0	Cronobacter_phage	2.6e-10	28.9
WP_012089901.1\|3892076_3892913_-	transcriptional regulator	Q8HA96	Salmonella_phage	2.5e-31	44.6
WP_012089902.1\|3893056_3893809_-	hypothetical protein	NA	NA	NA	NA
WP_012089903.1\|3893972_3894299_-	hypothetical protein	G8CTB7	Vibrio_phage	6.4e-07	38.4
WP_012089904.1\|3894304_3894928_-	hypothetical protein	NA	NA	NA	NA
WP_041411477.1\|3895258_3895489_-	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	5.3e-24	75.0
WP_157600330.1\|3895638_3896322_+	helix-turn-helix domain-containing protein	A0A2D1GM27	Escherichia_phage	3.4e-90	70.2
WP_012089907.1\|3896671_3897034_+	hypothetical protein	NA	NA	NA	NA
WP_012089908.1\|3897160_3897508_+	hypothetical protein	NA	NA	NA	NA
WP_012089909.1\|3897538_3898168_+	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	8.0e-30	37.8
WP_012089910.1\|3898164_3898554_+	hypothetical protein	A0A1I9SEY3	Klebsiella_phage	1.1e-24	51.7
WP_012088958.1\|3898550_3898829_+	hypothetical protein	NA	NA	NA	NA
WP_012089912.1\|3898829_3899108_+	hypothetical protein	NA	NA	NA	NA
WP_012089913.1\|3899104_3899335_+	hypothetical protein	NA	NA	NA	NA
WP_012089914.1\|3899331_3899940_+	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	2.2e-08	39.7
WP_012089915.1\|3899936_3900257_+	hypothetical protein	K7PKY8	Enterobacterial_phage	7.7e-13	38.3
WP_041411478.1\|3900378_3900606_+	hypothetical protein	NA	NA	NA	NA
WP_012089917.1\|3900608_3901814_-\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	2.1e-119	51.1
3906865:3906878	attR	NA	NA	NA	NA

DBSCAN-SWA_13

5010688 : 5024425

Bacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012090568.1\|5010688_5015566_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.2e-66	26.1
WP_006079507.1\|5015924_5016650_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.7e-31	34.7
WP_012090569.1\|5016692_5018009_+	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	1.5e-09	24.0
WP_012090570.1\|5018138_5020121_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.7e-14	35.8
WP_006079504.1\|5020198_5020672_-	peroxiredoxin	M1I839	Pelagibacter_phage	5.5e-23	47.4
WP_012090571.1\|5020752_5021721_-	GlyGly-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_012090572.1\|5022079_5022370_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_012090573.1\|5022372_5023068_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	1.1e-06	26.5
WP_012090574.1\|5023060_5024425_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	8.4e-08	23.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009661

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4416 : 28979

Acinetobacter_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080514264.1\|4416_4836_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_011979485.1\|5102_5477_-	hypothetical protein	NA	NA	NA	NA
WP_011839979.1\|5473_6043_-	ParA family protein	A0A1B3B0Z9	Gordonia_phage	3.5e-08	45.1
WP_086012318.1\|7425_8584_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.2
WP_157600332.1\|10309_10588_+	hypothetical protein	NA	NA	NA	NA
WP_011979489.1\|10734_11355_+	DUF2913 family protein	NA	NA	NA	NA
WP_011979490.1\|11447_11720_+	hypothetical protein	NA	NA	NA	NA
WP_011979491.1\|12046_12289_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	8.4e-20	60.0
WP_011979492.1\|12278_12563_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.2e-30	67.0
WP_086012320.1\|12672_12786_-	hypothetical protein	NA	NA	NA	NA
WP_011979493.1\|12761_13685_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.3e-148	81.8
WP_150102366.1\|13644_13890_-	hypothetical protein	NA	NA	NA	NA
WP_011979494.1\|13888_14917_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086012321.1\|15140_16318_-\|transposase	IS3-like element ISSba5 family transposase	Q716C2	Shigella_phage	1.2e-119	65.5
WP_148228718.1\|17967_18861_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-40	37.1
WP_011979498.1\|18997_20953_+	hypothetical protein	NA	NA	NA	NA
WP_011979499.1\|21806_22499_+\|transposase	IS6-like element ISSba18 family transposase	A0A077SL39	Escherichia_phage	4.7e-39	43.7
WP_011979500.1\|22660_23524_+	hypothetical protein	NA	NA	NA	NA
WP_011979501.1\|23757_24366_+	resolvase	A0A1V0E035	Clostridioides_phage	1.2e-09	31.9
WP_157600333.1\|25340_26087_+	hypothetical protein	NA	NA	NA	NA
WP_041411646.1\|26258_26456_+	hypothetical protein	NA	NA	NA	NA
WP_011979504.1\|26458_26947_+	hypothetical protein	NA	NA	NA	NA
WP_086012318.1\|27820_28979_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009665

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009661

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection