CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_009671	Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence	0 crisprs	csa3	1
NC_009668	Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence	1 crisprs	csa3,RT,cas3	1
NC_009669	Ochrobactrum anthropi ATCC 49188 plasmid pOANT01, complete sequence	0 crisprs	RT	0
NC_009670	Ochrobactrum anthropi ATCC 49188 plasmid pOANT02, complete sequence	0 crisprs	NA	1
NC_009667	Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence	1 crisprs	csa3,DEDDh,WYL,RT	7
NC_009672	Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

235 : 53444

Salmonella_phage(23.53%)

transposase,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011983025.1\|235_1267_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.2e-07	28.4
WP_086000526.1\|1379_2140_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.1e-12	38.8
WP_080514381.1\|3265_4420_+	ferredoxin reductase family protein	NA	NA	NA	NA
WP_148209300.1\|4781_5994_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	5.6e-64	48.1
WP_011983030.1\|6082_6781_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011983031.1\|7126_8560_+	YfcC family protein	NA	NA	NA	NA
WP_011983032.1\|8573_9800_+	arginine deiminase	NA	NA	NA	NA
WP_011983033.1\|9810_10812_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_011983034.1\|10813_11722_+	carbamate kinase	NA	NA	NA	NA
WP_086000527.1\|11828_12588_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.1e-12	38.8
WP_011983025.1\|12701_13733_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.2e-07	28.4
WP_011983036.1\|14049_14772_+	ABC transporter permease	NA	NA	NA	NA
WP_040128197.1\|15117_16290_+	acetate/propionate family kinase	NA	NA	NA	NA
WP_011983038.1\|16318_18706_+	phosphoketolase family protein	NA	NA	NA	NA
WP_011983039.1\|18743_19736_-\|transposase	IS5-like element ISOcan1 family transposase	A0A1B0VFY5	Salmonella_phage	4.3e-46	35.6
WP_040128237.1\|19877_21722_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-58	28.1
WP_011983041.1\|21832_22528_-	VIT family protein	NA	NA	NA	NA
WP_011983042.1\|22754_24053_+	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_011983043.1\|24043_24391_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011983044.1\|24423_25206_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_080514382.1\|26220_26550_-	divalent metal cation transporter	NA	NA	NA	NA
WP_011983045.1\|26585_27179_-	recombinase family protein	A0A219Y912	Aeromonas_phage	9.9e-22	35.2
WP_011982975.1\|27544_28768_-	chromate efflux transporter	NA	NA	NA	NA
WP_011982976.1\|28764_29067_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011982977.1\|29208_29985_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011982978.1\|30161_30665_+	protein-tyrosine-phosphatase	NA	NA	NA	NA
WP_011982979.1\|30710_31280_-	recombinase family protein	A0A219YA40	Aeromonas_phage	4.1e-33	48.9
WP_011983046.1\|31423_34390_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.8e-212	41.9
WP_011983048.1\|35301_36495_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	2.3e-118	55.2
WP_011983049.1\|36498_37542_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	4.9e-56	36.6
WP_011983050.1\|37696_38920_+	replication initiation protein RepC	NA	NA	NA	NA
WP_011983051.1\|39021_39447_+	DUF5086 domain-containing protein	NA	NA	NA	NA
WP_011983052.1\|39461_39842_+	DUF2195 family protein	NA	NA	NA	NA
WP_011983053.1\|40095_40725_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_011983054.1\|40886_41168_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	2.4e-10	39.1
WP_011983055.1\|41180_41477_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	5.1e-11	41.5
WP_011983057.1\|41855_42368_+	hypothetical protein	NA	NA	NA	NA
WP_011983059.1\|43739_44378_+	hypothetical protein	NA	NA	NA	NA
WP_040128186.1\|44472_44790_+	hypothetical protein	NA	NA	NA	NA
WP_011983060.1\|45874_48841_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-216	40.4
WP_011983061.1\|49004_49586_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.4e-44	52.7
WP_011983062.1\|49744_51319_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.0e-77	37.1
WP_011983063.1\|51367_51724_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011983064.1\|51720_52179_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011983065.1\|52207_52924_-	molecular chaperone	NA	NA	NA	NA
WP_011983066.1\|52946_53444_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009668

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CRISPR-Cas detection and classification

Crispr_ID: NC_009668_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009668_1

330053-330154

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009668_1

>merge|NC_009668|1|330053-330154|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCACCCGCACCGCTTTGCGGTGCGAGCTTATTACCTGATGGGCGTGCTTTATGGACTTCTTAGAAGTCCATGCCGCC

>NC_009668|1|1|330053-330154|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCC	ACCCGCACCGCTTTGCGGTGCGAGCTTATTACCTGATGGGCGTGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009668.1\|WP_011982747.1\|335472_336462_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_009668.1\|WP_040128759.1\|328373_328631_-\|hypothetical-protein	unknown	unknown	unknown
NC_009668.1\|WP_011982748.1\|336562_337423_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NC_009668.1\|WP_011982749.1\|337729_340642_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NC_009668.1\|WP_011982751.1\|341790_342357_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_009668.1\|WP_010660990.1\|329368_329764_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_009668.1\|WP_010660989.1\|328724_329285_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_009668.1\|WP_011982742.1\|326314_326716_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_009668.1\|WP_011982740.1\|325059_325755_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NC_009668.1\|WP_115179315.1\|325821_326232_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_009668.1\|WP_011982739.1\|323932_325063_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NC_009668.1\|WP_010660993.1\|334582_335431_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NC_009668.1\|WP_040128440.1\|342353_342827_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_009668.1\|WP_011982737.1\|321605_322223_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_009668.1\|WP_011982738.1\|322334_323924_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NC_009668.1\|WP_011982753.1\|343017_344748_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_009668.1\|WP_011982743.1\|326818_328210_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_009668.1\|WP_006472506.1\|331884_332181_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_009668.1\|WP_011982750.1\|340896_341571_+\|hypothetical-protein	unknown	unknown	unknown
NC_009668.1\|WP_011982746.1\|332421_334239_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296

Protein	Function_ID	Function_description	E-value
NC_009668.1\|WP_011982747.1\|335472_336462_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.24464e-153
NC_009668.1\|WP_040128440.1\|342353_342827_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.91178e-63
NC_009668.1\|WP_011982748.1\|336562_337423_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	1.85241e-73
NC_009668.1\|WP_011982749.1\|337729_340642_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NC_009668.1\|WP_011982751.1\|341790_342357_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	2.48333e-47
NC_009668.1\|WP_011982738.1\|322334_323924_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	7.14674e-149
NC_009668.1\|WP_010660989.1\|328724_329285_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.7538e-33
NC_009668.1\|WP_011982742.1\|326314_326716_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	7.86627e-22
NC_009668.1\|WP_011982740.1\|325059_325755_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	3.6031e-133
NC_009668.1\|WP_115179315.1\|325821_326232_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.20549e-25
NC_009668.1\|WP_011982739.1\|323932_325063_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	4.01631e-158
NC_009668.1\|WP_010660993.1\|334582_335431_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.00478e-94
NC_009668.1\|WP_011982737.1\|321605_322223_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.57845e-43
NC_009668.1\|WP_010660990.1\|329368_329764_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.17064e-41
NC_009668.1\|WP_011982753.1\|343017_344748_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.40895e-81
NC_009668.1\|WP_011982743.1\|326818_328210_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_009668.1\|WP_006472506.1\|331884_332181_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	8.43261e-53
NC_009668.1\|WP_011982746.1\|332421_334239_-\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	5.33504e-13

>NC_009668.1|WP_010660990.1|329368_329764_+|helix-turn-helix-transcriptional-regulator
MKPGDFKETSACRTVADILSRVGDKWTVLVVSYLGNHPMRFNELRRSVDGISQKMLTTTLRNLERDGFVTRTIFPTIPPKVEYELTEMGSDLLRPVRALGEWAIANEAKVMMARARYDASISGKAQIDAAE
>NC_009668.1|WP_010660989.1|328724_329285_-|NAD(P)H-dependent-oxidoreductase
MSKLKVAVIVGSTREQRFAPVPAQWIAKLVAERPELDVEILDVADYPMGFYGDTSTTTAQAETADKWKNKLREFDAYILTAAEYNHAPTAVLKNAIDYGDWIQKPMGFVGYGGVGGARAVEQLRMIAVEMSSMSVKTGVHILFPDYLAVVKGENKLDDFPHLAEAAKNMLDQLVWWGKALKSARAV
>NC_009668.1|WP_040128759.1|328373_328631_-|hypothetical-protein
MRKELPIASAPKDGRKITVVWTDEDDQRNESIAQYRTLAQLQAGGGQWDETDTGWWTFTDSKTQRKIEPTAWISETDNGDEEDDA
>NC_009668.1|WP_011982743.1|326818_328210_-|class-II-fumarate-hydratase
MTATRTETDTFGPIDVPADRYWGAQTQRSLQNFKIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDEHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPVHPNDHVNMSQSSNDSFPTAIHVATAVEAVNRLYPAVEHLTKALQAKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRIEQSLADVFLLAQGGTAVGTGLNAPIGFDTGFAEAVSEITGLPFKTAPNKFEALASHGAILNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEALTMVTTQVFGNQTTITVAASQGHFELNVFKPVIAYNVLQSIRILSDAMVSFADHCVEGIEPNLNRIKELLDRSLMLVTALAPAIGYDNAAKIAKTAHKNGTTLREEALASGLVSAEDYERLVRAERMIAPE
>NC_009668.1|WP_011982742.1|326314_326716_-|DoxX-family-protein
MSSITPQSNGAVTLIARIFLSILFILAGYGKLTAISGTAGYFAGLGLPVPTVTAVIVGLVEFVGGLAILVGFQTRIAAAIVGLFTIGATLVAHMDFSQGMNAMMAQKNLAIAGGLFILALHGAGSLSIDAKRR
>NC_009668.1|WP_115179315.1|325821_326232_+|GFA-family-protein
MNSVRKLIGRCTCEAVRFTVTDEFEYALNCHCSLCRRATGSAFKAFGGIKTHALEETNSKSSLMLVGNEIDHDVRCASCASFLYSIVRGGEYVHVNYGVLAEEPKLKPSAHIFVGSKAPWYDILDDLPQFEENPPF
>NC_009668.1|WP_011982740.1|325059_325755_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEQTLAVLDKAGYKVILPDDSRNYRARVEGETDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHSEERVAIEAELGFGHADVVVAVPEVWRDVTSMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGVILRSQACLVSARRARENARVTEVATRIRKGLGG
>NC_009668.1|WP_011982739.1|323932_325063_+|ATP-phosphoribosyltransferase-regulatory-subunit
MAGSSSSGVFNSLRATLDMREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQHRDGAAEFLQAGIEDLGASDEAASDARSIADALSCVRAAAPEAELEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDANSMEQVLAELTGAQRRDPLPETLAGLVAEGDESGLARMLEAEMLEAGISPSAGRSPAEIARRLIEKEDLAATRFPASALDLLKQFLETRVTLDSAAVTLRAFASEHALDLAAVLQKFEARSEAIANAGIATKDIIYDASFGRPLDYYTGLVYEIRAPGVEKEGVLAGGGRYDRLLTMLGASENIPGVGFSIWLDRLQMLVGEKK
>NC_009668.1|WP_011982738.1|322334_323924_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARFVAENYESLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTMERLGISRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGEGRLDESGDFTKGANLDDEQIKRMMNFITVAARDYDDISQRKAIDPVFPYFSPEGGEPIGKTLLQAIRESDFNKSSIMLEGLKELEDIRDLAIAAGYDDGRIIIDPSCVRGLEYYTGPVFEAELQFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGISIGVSRLMTALKNLGKLDVSDVVGPVVVLVMDRDTESLGRYQKMVSDLRQASIRAEMYVGGSGMKAQMKYADRREAPCVIIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITAKENGLIDAVREILVSQARDRAEQSK
>NC_009668.1|WP_011982737.1|321605_322223_+|LysE-family-translocator
MDLVSLLAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAIWLSLAVWGLAALANTFHTAFLILKYVGVAYLIYLSWKMWIAPVDEVADENAIPRQGEAGKLFLSALAITLGNPKIMVFYLAILPTVVDITHVSLVGWAELLVVMFAVLAAVDTAWVVLAAQARRFLRSPRMMRIANRTSAGMMAGAAVAIATR
>NC_009668.1|WP_006472506.1|331884_332181_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEIVAVGAGARDEAGKLIALEVKAGDKVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NC_009668.1|WP_011982746.1|332421_334239_-|hypothetical-protein
MSLRFAKDERGNFAMIMALVLVPLLLAGMVAVDSANLMRVRNNVQASLDAAALAVGRRFSTGESQTVVQVYGAQVFTANLTALSADAVNFDVAFPKDKTTDQQIQATAGFTYKSLFGVIASRLTGDDWDQNQYTLSSSVRLKNTIEVALVLDNSRSMDETRSGSTKKRIDLLKEAASQLVETMAAQSTLITHVENPVQFSLVPFAGSVNVGPQYLNAAWMDPEGRSPVNLENFTLPVTIDSTRKIEEKPVGSGRYYKSGTGWGERNNKPYSRAELYADLSLRSKETWLPWQGCVESRPGTYALDVTPPSDNNPDTLFVPMFGPAEYYNTDSRGNVTSTVLNSWWQDDTSLAYSPRQSDLKKYYLRDSLDKIYRGGRSNDGGPNYSCTSSPLTPLTDVTTEQGMKTIQTAIKAMVPSGGTNVPEAMAWGWRTIVRGAPFTEARPSTERGNDKVVIVLTDGANTYYKYDGLAGSGPDRAANFSYYSAHGYTARITKHYSQARLFQESGVSVSQNNSTYTKAMNARFAKLCDNAKSANIIVMTVALDLSETNSTEKAQIDLLRSCSSNSRVRTESGRPAKLFWNSTGGELSETFRQIGDELSNLRIVD
>NC_009668.1|WP_010660993.1|334582_335431_+|TIGR01459-family-HAD-type-hydrolase
MKQLERLDDLTDQYDVLFCDVWGVVHNGEAAYPAAIEALKRARAKGVTVILVTNSPRPHPDVEKQMLGLGVPADAYDRVVTSGDVTRDLIAEGPRKVFHIGCERELTIYDGLDVELVEEFEASGVVCTGLYDDESETPDDYKELLVRLRSRNLPFICANPDIMVERGTRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRFAEEIRGETVEKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYTTDGTVDIARMEAFLQKHGNRPVAALNALV
>NC_009668.1|WP_011982747.1|335472_336462_+|bifunctional-riboflavin-kinase/FAD-synthetase
MTPSSFQRLSGTDSLPERLQNCVVAIGNFDGVHRGHQAVLERALEIAEKSDLPAVVLTFEPHPRSFFKPDAPIDRLTAAAKKAEILRLMGFDAVVEQPFTGEFSSRSAEDFVEHILVERLQASCVVTGYDFHFGKGRRGTPEFLQKAGEKAGFTVTLVDAFSDEGDNLVSSTRIRNLLCEGDVVQAAGLLGYRYMACGKVIHGKKLGRTLGFPTANMQIDAQAGLKHGIYAVRFRRENGDLYDGVASFGRRPTVDSDGTPLLETFLFDFSGDLYGEIACVSFFGFLRGEIKFDGLDPLIDQMKRDDAEARALLASAKPLSELDRLLSFE
>NC_009668.1|WP_011982748.1|336562_337423_+|MipA/OmpV-family-protein
MLEFNVARIVPLALVAGAAFLTSSSLAFSADVQQTDIYAAETVQPARKHFWSGDWYLKVGAAGLVAPKFEGSNKYRFSAQPLISLGRQGQATRFSSRNDNVSFALIDNDRFRVGLAGKLLFERDDDIHGLKDTKFGGEAGAFVDVYPTDWLRVRGEVRHGIRAHNGVVADIAADAFYDVTPTVRVSGGPRATFASKDYFKTYFGVDAEEAVASGLSEYSPGGGFKSAGVGGAITWKTTDKIDTSLFGEYSRLQGSAKDSSIVKERGSPDQFMVGVSATYRFDFSLD
>NC_009668.1|WP_011982749.1|337729_340642_+|isoleucine--tRNA-ligase
MTETTKIDYSKTLYLPQTEFPMRAGLPQREPLFVERWEGMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAEGKNKDEVPINEFRRECREFATNWIKVQTEEFKRLAILGDFENPYTTMNFHAESRIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDVESDMIWVKFPVAGQNDLSGSDVVIWTTTPWTIPGNRAVSYSSRIEYGLYEVTEAENDFGPRPGEKLIFADKLAEESFAKAKLQFKRLRGISADELGKIVLDHPLKGFGGGYEFIVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMNNARELEARGIDPSIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKSVVDQLIARDKLFARGRLKHSYPHSWRSKKQVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDDTRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRILDAFEAEGADAWFAEGARERFLGSRANEGWTQVRDILDVWFDSGSTHTFTLEDRPDMKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDKGENLPYANLPELERLMLHRLTELDEVVRSGYDAFDFKRIARTLIDFMNVELSAFYFDIRKDALYCDAPSSVRRKAALQTVREIFDHLTTWLAPMLPFTMEEAWLDRYPQSVSVHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPLVYISDKSLTDSLEGLDFAEICITSGISLSDAAVPEDAFTLSDVKGVAVVPVRAEGEKCARSWRYTTDVGSDPEFPDVSARDAAALRELKALGKLEA
>NC_009668.1|WP_011982750.1|340896_341571_+|hypothetical-protein
MKIEGRVLVLMTAIAGVSLSGCVSSPTYGTDKTAGAQLFDDVSNMASFGQGKNKKERIDYKPRPDLVRPAPGDKGQLPAPQQSVVSANDPNWPESPEQRRKRLRDEITANRDDPNFVSPVVQDGPVASNIQAALPRGNSRREDYESRTPTFDPAKVAAYKAARQQQVQGSSTTRRYLSEPPLTYREPASTAAVGELGTDEAQKERERKKASGKSKGWRDYLPWN
>NC_009668.1|WP_011982751.1|341790_342357_+|cytochrome-b
MNDTNTIWDTPSGYGLISRSLHWLMALLFLWQFASAVLRVVAKDTTIYNIFWSAHYQLGFALLVLVLLRGVWGLLNSGRRPHKSGHVGKLAKLGHLVIYGLMFAVPALALLRTYGGGRGFSFLGIRIFEQTDVKNAALTAPGSALHGLLGWGLLVIIAGHVLMALIHHFMLRDNTLRYMAGHKALSRS
>NC_009668.1|WP_040128440.1|342353_342827_-|nucleoside-deaminase
MNKSAKIPDPKMATPMEIALAEARAAGSRGEVPIGAVIVHQGTIIARAGNRTREFNDVTAHAEVLAIREAGKALQSERLVDCDLYVTLEPCAMCATAISFARIRRLYYGASDPKGGGVEHGPRFYTQPTCHHVPEIYAGFSEGDSQKILRDFFRDKR
>NC_009668.1|WP_011982753.1|343017_344748_+|pseudouridine-synthase
MTKDDDNKDGKRPHGRGGRSDRPARPDRDTRPRRDDGGRDKPRKFGPRDAEGQEDTGERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLKQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPAEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQVQLDELKNGIAVDGVFYGSIEATLEREQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRILRDQLGDKLIEDSGADFDAPVLNEFSNAAVQGRTRRDVEDEGEEGERRRGPREREWISSSPQRRRGRDDKGAEKVEPRRRGNANVWMAPGARPKGENAAAKPARVERQVPHRSAKFSGDLQMRPRRAGDEEQGRDEGGERRYNKRPEGRFDKDARPQRPRPEGNRSEEGRPERREQREDGRKERRPGKRERAELRDAEGRTVEHGKGGFEGRKTGKPGGPRGEGRFGASDRDTRSGPRSSGPGNKSRRFDDGSKDGPRRGPGNKPGGKPGGKPGGSKSGGGRTGGGGADRRR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1846682 : 1855564

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010660578.1\|1846682_1848119_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.9e-83	40.3
WP_172488820.1\|1848138_1849962_-	glycosyltransferase	M1HYN2	Paramecium_bursaria_Chlorella_virus	1.3e-75	37.1
WP_012093688.1\|1849985_1850972_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.6e-45	36.4
WP_080514364.1\|1850968_1851937_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.8e-90	49.5
WP_029928696.1\|1852378_1853083_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012093691.1\|1853240_1853972_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_010660572.1\|1854059_1854782_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.0e-09	24.0
WP_012093692.1\|1854784_1855564_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-15	26.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_009670

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46524 : 92111

Salmonella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011982980.1\|46524_49491_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.0e-212	41.9
WP_011982982.1\|50161_50785_-	hypothetical protein	NA	NA	NA	NA
WP_011982983.1\|51181_51505_+	hypothetical protein	NA	NA	NA	NA
WP_011982984.1\|51546_52131_+	hypothetical protein	NA	NA	NA	NA
WP_011982985.1\|52459_53530_-	response regulator	NA	NA	NA	NA
WP_011982986.1\|53526_54105_-	chemotaxis protein CheB	NA	NA	NA	NA
WP_011982987.1\|54101_54941_-	chemotaxis protein CheR	NA	NA	NA	NA
WP_011982988.1\|54937_58363_-	response regulator	A0A1V0SGX0	Hokovirus	5.7e-37	29.3
WP_011982989.1\|59447_59822_+\|transposase	transposase	NA	NA	NA	NA
WP_011982990.1\|59818_60166_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.9e-26	54.3
WP_041545003.1\|60229_61852_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-104	40.2
WP_011982993.1\|62344_64459_-	catalase	A0A2K9L0T1	Tupanvirus	9.3e-139	48.5
WP_011982994.1\|64529_65027_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_147284763.1\|65593_65797_-	hypothetical protein	NA	NA	NA	NA
WP_041545837.1\|66582_66864_-	hypothetical protein	NA	NA	NA	NA
WP_158304338.1\|66918_67374_-	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	1.3e-26	41.5
WP_011982997.1\|67613_70589_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	37.6
WP_049768476.1\|70678_71596_+	ABC transporter permease	NA	NA	NA	NA
WP_172488833.1\|71555_72497_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011983000.1\|72493_74191_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-19	31.7
WP_011983001.1\|74330_75869_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.1e-47	37.1
WP_024899799.1\|75867_77607_+	recombinase family protein	NA	NA	NA	NA
WP_011983003.1\|78366_79443_+	catalase family protein	NA	NA	NA	NA
WP_011983004.1\|79476_80175_+	hypothetical protein	NA	NA	NA	NA
WP_011983005.1\|80174_81551_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_011983006.1\|81602_82457_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_035228312.1\|82521_83121_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011983008.1\|83187_85167_-	oleate hydratase	NA	NA	NA	NA
WP_011983009.1\|85260_86364_-	ABC transporter permease	NA	NA	NA	NA
WP_011983010.1\|86360_87569_-	ABC transporter permease	NA	NA	NA	NA
WP_011983011.1\|87571_88564_-	HlyD family secretion protein	NA	NA	NA	NA
WP_041545839.1\|88637_89309_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011983013.1\|89410_90610_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_024899803.1\|90727_91045_-	ABC transporter permease	NA	NA	NA	NA
WP_011983014.1\|91019_92111_-\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	2.8e-14	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_009667

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009667_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009667_1

521447-521524

Orphan

Consensus_repeat	Method
AAGCGCATCCCGAAAAGTGTGAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_009667_1

>merge|NC_009667|1|521447-521524|CRISPRCasFinder
AAGCGCATCCCGAAAAGTGTGAAACGGTTTTCGGATAAGATGCGCGGGAAAATCAAAGCGCATCCCGAAAAGTGCGAA

>NC_009667|1|1|521447-521524|CRISPRCasFinder
AAGCGCATCCCGAAAAGTGTGAA	ACGGTTTTCGGATAAGATGCGCGGGAAAATCA
AAGCGCATCCCGAAAAGTGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009667.1\|WP_012090773.1\|523126_523819_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924
NC_009667.1\|WP_012090778.1\|527561_527984_-\|hypothetical-protein	unknown	unknown	unknown
NC_009667.1\|WP_012090769.1\|518298_519549_+\|peptide-antibiotic-transporter-SbmA	unknown	unknown	gnl\|CDD\|182960
NC_009667.1\|WP_012090772.1\|521624_523076_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_009667.1\|WP_012090766.1\|516074_516401_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_009667.1\|WP_012090771.1\|520756_521440_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226996
NC_009667.1\|WP_012090770.1\|519557_520553_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200598
NC_009667.1\|WP_012090779.1\|528129_528792_+\|TenA-family-protein	unknown	unknown	gnl\|CDD\|381693
NC_009667.1\|WP_012090780.1\|528792_529203_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226278
NC_009667.1\|WP_012090776.1\|525410_526733_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_009667.1\|WP_012090774.1\|523975_524578_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_009667.1\|WP_012090781.1\|529437_529830_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_009667.1\|WP_012090777.1\|526751_527435_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_009667.1\|WP_041545281.1\|517033_518215_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NC_009667.1\|WP_012090763.1\|514001_515045_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NC_009667.1\|WP_012090765.1\|515718_516078_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226353
NC_009667.1\|WP_012090767.1\|516463_516832_-\|hypothetical-protein	unknown	unknown	unknown
NC_009667.1\|WP_040129836.1\|524587_525061_-\|hypothetical-protein	unknown	unknown	unknown
NC_009667.1\|WP_012090762.1\|513599_513950_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NC_009667.1\|WP_012090764.1\|515067_515676_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955

Protein	Function_ID	Function_description	E-value
NC_009667.1\|WP_012090773.1\|523126_523819_-\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	1.65932e-18
NC_009667.1\|WP_012090769.1\|518298_519549_+\|peptide-antibiotic-transporter-SbmA	gnl\|CDD\|182960	PRK11098, PRK11098, peptide antibiotic transporter SbmA.	0
NC_009667.1\|WP_012090772.1\|521624_523076_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_009667.1\|WP_012090766.1\|516074_516401_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.97402e-18
NC_009667.1\|WP_012090771.1\|520756_521440_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226996	COG4649, COG4649, Uncharacterized protein conserved in bacteria [Function unknown].	2.19933e-105
NC_009667.1\|WP_012090763.1\|514001_515045_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.78746e-55
NC_009667.1\|WP_012090779.1\|528129_528792_+\|TenA-family-protein	gnl\|CDD\|381693	cd19358, TenA_E_Spr0628-like, TenA_E proteins similar to Streptococcus pneumoniae Spr0628 and Saccharomyces cerevisiae S288C PET18. This family of TenA proteins belongs to the TenA_E class, and lacks the conserved active site Cys residue of the TenA_C class; most have a pair of structurally conserved Glu residues in the active site. TenA_C proteins (EC 3.5.99.2; aminopyrimidine aminohydrolase, also known as thiaminase II) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway; the role of TenA_E proteins is less clear. Arabidopsis thaliana TenA_E (not belonging to this family) hydrolyzes amino-HMP to AMP, and the N-formyl derivative of amino-HMP to amino-HMP. Members of this family include the putative thiaminase Streptococcus pneumoniae Spr0628, and Saccharomyces cerevisiae S288C PET18, a protein of unknown function whose expression is induced in the absence of thiamin. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect. Many proteins in this family have yet to be characterized.	4.24757e-94
NC_009667.1\|WP_012090780.1\|528792_529203_-\|DUF1311-domain-containing-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	2.59228e-23
NC_009667.1\|WP_012090776.1\|525410_526733_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	3.90176e-180
NC_009667.1\|WP_012090774.1\|523975_524578_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.46341e-43
NC_009667.1\|WP_012090781.1\|529437_529830_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	8.13556e-42
NC_009667.1\|WP_012090777.1\|526751_527435_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.5871e-21
NC_009667.1\|WP_041545281.1\|517033_518215_+\|MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	5.80355e-89
NC_009667.1\|WP_012090770.1\|519557_520553_-\|polysaccharide-deacetylase	gnl\|CDD\|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	2.49836e-160
NC_009667.1\|WP_012090765.1\|515718_516078_-\|hypothetical-protein	gnl\|CDD\|226353	COG3832, COG3832, Uncharacterized conserved protein [Function unknown].	1.24881e-08
NC_009667.1\|WP_012090762.1\|513599_513950_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	4.1302e-64
NC_009667.1\|WP_012090764.1\|515067_515676_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.05735e-138

>NC_009667.1|WP_012090771.1|520756_521440_+|tetratricopeptide-repeat-protein
MADDSFIREVNEEIRSERAKQIWRNFGPLLIGGAVAIVLGTAGWVGYQHWVDSKASASGDKFLAALDLASEGKNDEALTALDDLEKTGYGSYPVLARLRAASVIADKGDAAGAVKAFDEVAADNAVPAPLRDVARLRAGYLLVDSGSYDDVAKHVETLSADGNPMRSSAREALGLAAWKAERFDDAVKLFQQIANDSLAPANIRQRANTMLDLMRSAGVNVPDAQST
>NC_009667.1|WP_012090770.1|519557_520553_-|polysaccharide-deacetylase
MRILSPRPVLLSALVLATCAAQAEPVSTKPQYVLISFDGAHDNALWTRSRELAKKNNAHFTYFLSCVFLMTKQDRRDYKPPHKRAGSSNVGFALSRDEVVARLGNIWQAHLEGNEIASHGCGHFDGTDWSTADWDKEIKEFRRITADAYKNNGISGEPEGWRDLALKGIDGFRAPYLAASKPVQDALKANGFRYQASSITRGPEEPTLAGQFASFGLPLVPEGPSQRPIVAMDYNLYVRHSKGKEAPQQSAAFEERAYKAFRTAFDKQYTGERIPLQLGFHFVLMNDGAYWRAMERLVTEVCTKPDVKCTTYSDYLDSLDKDAVHASQNRS
>NC_009667.1|WP_012090769.1|518298_519549_+|peptide-antibiotic-transporter-SbmA
MFVSFFPRPKLFFWSALVWSLLAVLGWYEGGERLGAIFGLPPLAQDAAPIIGASLFWSAPFLWFYIYFAVATFAFYLFWAWFSPHPWQRWSILGSALILFTTYFGVQVSVAVNAWYGPFYDLVQKALTSPGAVSASDFYWGMVTFAEIAFIGVTVGVLSLFFVSHYIFRWRSAMNEYYVSHWPKLRSIEGAAQRVQEDTMRFSTTLEQLGVSLVKSVMTLIAFLPVLFSFSEKVSELPVVGMVPHALVVAAIFWAAFGTGFLALVGIKLPGLEFNNQRVEAAYRKELVYGEDHADRAQPVTLGELFRNVRHNYFRLYFHYVYFNVARIFYIQADNIFPTLILVPSIVAGKLTLGLMNQITNVFSQVQGSFQYLVNSWTTIIELLSIYKRLRAFEAVIRDEPLPWLDQANLDATPSA
>NC_009667.1|WP_041545281.1|517033_518215_+|MFS-transporter
MTKPASPQHRTAVRYAFGGFLAMAAAMGIGRFIYTPILPGMMADIGFTAADAGFIASANYIGYLLGAVVAGYGWSAGIERKSVIAGLIISGLLCAAMAFFDGVWLFSIIRFAAGFISAVTMILCTAIVLSHVTAAERAGLGALHFGGVGSGIALSAVLVALIRFAGLDWRADWIGAAVLTIVMVVLVGAFVREGPVGGNSGTREPPLPKSFAFNALALAYGIFGFGYVITATFLIAIVRATDGGPLMEAAVWVVTGLTAAPSIWLWAPAARKFGLFNAFALTAILEAVGVAASVVLAPPLGPLVGGALLGITFMALTAFGLQIARTLAPASPKRALARMTVCFSIGQIIGPLVAGFMAQRSGSFTSASLAAALSLVVVAVLGIMAGRAARTSG
>NC_009667.1|WP_012090767.1|516463_516832_-|hypothetical-protein
MNRSGISACLLAVVAVASAGGVQAKELTTMNEVRDALNACWSPLSDSKNSSVTLRFSFKRDGNLKGPPCASAINVQGDDKTRKAFVIAAIEAVERCTPLKLAPSLAHSISGSVFTMRFHSSD
>NC_009667.1|WP_012090766.1|516074_516401_-|winged-helix-turn-helix-transcriptional-regulator
MNENDIFHDIFRALADPTRRMIFEKLASGSMNASALRQGMEISQPAMSQHLAVLRSAGLVREEREGRFVNYEVDPNGLTLIANWLAKYRAYWPERIDALKTLLKDMDQ
>NC_009667.1|WP_012090765.1|515718_516078_-|hypothetical-protein
MTDRQEEPREKGIELEYELDAAPQKVWRAISIPEFRENWLPSEALADPEPASCKPGEEISYRMRESEPPFLESMVTFRIVPGVSGGTFLRVIHELNDTRLKRTAAVAANSNRAPMMRAA
>NC_009667.1|WP_012090764.1|515067_515676_-|ATP-dependent-Clp-protease-proteolytic-subunit
MRETMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALICAQLLFLEAENSKQPINLYINSPGGVVTSGLAIYDTMRYVRAPVHTLCMGTARSMGSFLLMAGEPGHRAALPNANLLVHQPSGGFQGQASDIFIHAEEAQRTKRLMTRLYAEHCGRTYEEVERALDRDNFMTAEAGLEWGLIDRILERREVSAA
>NC_009667.1|WP_012090763.1|514001_515045_+|aromatic-acid-exporter-family-protein
MRQRANKVVQQWSVSWRDSLIASFAGGVAWLICQLALGQPKPVFAMVTAVICLAPNLPNHGKQAIGVMVGVTTGVLVGELSLLLPETVPVFHTSIVTFVAMVLATSFGMAPAIAIQSGVSAILVLAMGPQVAGITRLVDVLVGAGVGLLFSQILMTPSPVLLIDKAVRGLLDRLANGLKQSAVALEKQDLVRAQSAINQFTSAHRAVIALGDGIALARSNARWSLRGRLVAREVTEMAGRYDRRGIRLYASALLFGEALGNALRKKEAPPPPWLTEALQVVIANCELEEGQEPSRIPPMPKDIPFGWRDSAHRLSSMQDTLLHFLHSDIPDSVPVTRRTTEEKPTAA
>NC_009667.1|WP_012090762.1|513599_513950_+|ArsC-family-reductase
MSVTIYGIKNCDTMKKARTWLEDHGIDYAFHDYKKEGLDGETLDHFLKSVPWEQLLNRAGTTFRKLPEEERQNVDAAKARALMLAQPSMVKRPVLDKDGKLTVGFKPELYESFFKS
>NC_009667.1|WP_012090772.1|521624_523076_+|ribosome-biogenesis-GTPase-Der
MGFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLEEAANDSLEARMRAQTEAAIQEADVILFVVDAKNGLTPTDSTFAEVVRRSGKPVVLVANKAEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGEERVFADEKEEETADEVFTPKAVGELIGDDIEDPDEEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRGRKIKLFDTAGLRRKSRVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADLIIREGRAPIIAFNKWDLIEDRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRVSTGRLNRWLAGVIAHQPPPAVSGRRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDNPFAGRAKKKK
>NC_009667.1|WP_012090773.1|523126_523819_-|alpha/beta-hydrolase
MSTKPTIVLAHGFWGGAAHWSKAILALSRMGHDKIRAVEMPLTSLADDAERLSKMTVQQEGPVLLVGHSYGGAVITQAGDLPNVVGLVYIAAFAPDAGESPGGISQEHPPAAFPNLAPDSDGYLWIKYDKFHESFCQDLSADEALVMAITQKAPIANTFGDTITAPAWKKKPTWYQISSQDHMIAPENQKRMAERMNPRKTITLDASHASLASRPDEVAGLIAEAANSVS
>NC_009667.1|WP_012090774.1|523975_524578_-|OmpA-family-protein
MTNQIKGCIALGLALLCLPSVATAQNTSADNSAYIRDLVPEIRDLVSASGSTDGKARGLSGAAQEIVEKSGNITMRETEDSIVLSVTSDVLFDFDSAKLTGKAKATLTDIAKILESMPDSAVRVVGYTDSKGADSYNDKLSKSRADAVTKFLVNNGVQSARLKPEGRGESEPVAPNEIKGKDNPDGRAQNRRVEFVLPKT
>NC_009667.1|WP_040129836.1|524587_525061_-|hypothetical-protein
MAFLSRTVLATVLLSTSALPHAANAQETANQPIASGYHSSGQATAEVSGVVADGDKLTVKVRFINAKEGGSVSTTLYTALSDKDYENDYYLLAGDKKYLLLKDSEGKPLAPASVSLFGNGHVVGVWHGVFPAPPKGQKVTLYIKGVEPLGPFAVPAE
>NC_009667.1|WP_012090776.1|525410_526733_+|Hsp70-family-protein
MTKADQSRFDGVTLGIDFGTTNTVLSVAAPDGTTVVLSVPKDGVDITGYRSILCFWQDRETGERTVESGPWAMDAFVNAPHSTRMLQSFKTFAASKSFTDTPVFGKRFKFEDILATFLETVAARLGDRLPPKGNRVVIGRPVIFAGASPDEALAMQRYEKAFRAFGFTDIHYVYEPVAAAYFYAQELNAASTVLVADFGGGTSDFSIVRFEVGKNGLSFTPLSQTGLGIAGDTFDYRIIDNAVSPLLGKGTEYQSFGKRLTIPNHYYANFARWNTLFLMNSPATIRDLDELARQAVDPKPLEHFINLIENDYGYEIYRAVSDLKVRLSSQRMSELHFKADDFEIRSDITRNDFENWIADDVRQIEQSVQQAVDKAELETSSIDRVFLTGGTSFVPVIRTVFENRFPDAVVTSSNQFDSIANGLALIGQSADIERWSVKHD
>NC_009667.1|WP_012090777.1|526751_527435_-|signal-peptidase-I
MQFTKAFIAGFAGVISSLLTCNTATAELMNLRVSSTSMMPVFGPGDVVAATSYRPQEKIERGDLVVYTVDYVSKELSGDVPIKAEFLGRVIGLPGETVKIENGIPLINGKALATTKITSTIDDGCPEETVSNSYYQCRFVRETIPEGKSYVLLNTVDHGFIDNVKEKALARGQYYIMGDNRDNANDSRGKYVGLVSKDRIKGKIRMVSASVRKPDREWRLEGFPGLK
>NC_009667.1|WP_012090778.1|527561_527984_-|hypothetical-protein
MNTYFSPARAALLLAVAIALPAGSAFAKSACDGVTTTLTKQQKTDYRSFIAQSLGKKVKPASVSIESFMQYGNWSVVYADVPVADPGYFFFDLSSKPPKLKDIWGGMAERNEIPDLVKWAEKLGANKEIAACFADTATAS
>NC_009667.1|WP_012090779.1|528129_528792_+|TenA-family-protein
MPSDVKAGRFTDNLRQDAEPFWSQAVGHRLVGEIYTGTVAPDVMTRYLVQDHRFIDCFLSLLGGTLVNCDRMEAKLTLGRFIGMISSDENSYFERSFAKLAVADAERFDTPDATPTAAFKELMLEAARSGSYAVCLSVLTVAEWLYLDWAEKAPKPLPDDFIFAEWIVLHDNPYFVEFVGFLRSELDRVGPAAAEQCQQFFRRAVELEKAFFDAAYESRN
>NC_009667.1|WP_012090780.1|528792_529203_-|DUF1311-domain-containing-protein
MQVLKIGVIGVAFSAFAIIATAQADDCQNASSQSALNECYGKAYKKSDAELNKIFKTLQRRADDADLKKKLVQSQRTWIAFRDAECDMQTVGGGSISGMAYSICLSDLTAERVSDLKKYLKCEEGDSNCPFPTASN
>NC_009667.1|WP_012090781.1|529437_529830_-|GFA-family-protein
MDKVTGGCLCGNVRFEATGQPYRVGICHCLDCRKHHGALFHASAIFPEAAVTVEGETRDYAGRFFCPRCGSPVFGRSADEVEINLGSLDAPDQFKPTYELWTIRRESWLPPFPDMKGYERDRDGSSRFED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

221610 : 267469

Brucella_phage(51.28%)

portal,protease,head,integrase,capsid,terminase,tail

attL 210193:210208|attR 260022:260037

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
210193:210208	attL	NA	NA	NA	NA
WP_011982392.1\|221610_223545_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	8.8e-27	24.6
WP_010658035.1\|223548_224394_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_011982393.1\|224744_225806_-\|integrase	site-specific integrase	A0A291AUQ3	Sinorhizobium_phage	1.6e-123	59.4
WP_041544881.1\|226079_226343_-	hypothetical protein	X2CXH8	Brucella_phage	1.8e-44	95.4
WP_041544882.1\|226345_226540_-	hypothetical protein	NA	NA	NA	NA
WP_041544884.1\|226536_226728_-	hypothetical protein	NA	NA	NA	NA
WP_011982394.1\|226724_227006_-	hypothetical protein	X2CY09	Brucella_phage	5.4e-10	47.1
WP_011982395.1\|226995_227415_-	hypothetical protein	NA	NA	NA	NA
WP_011982396.1\|227411_227555_-	hypothetical protein	NA	NA	NA	NA
WP_011982397.1\|227551_228244_-	hypothetical protein	X2CYA0	Brucella_phage	2.1e-07	31.6
WP_011982398.1\|228243_228792_-	HNH endonuclease	K4F9R1	Cronobacter_phage	9.4e-27	41.0
WP_011982399.1\|228781_229150_-	hypothetical protein	NA	NA	NA	NA
WP_011982400.1\|229142_229478_-	hypothetical protein	NA	NA	NA	NA
WP_011982401.1\|229477_230479_-	hypothetical protein	A0A223W084	Agrobacterium_phage	9.5e-09	45.9
WP_011982402.1\|230475_230871_-	DUF968 domain-containing protein	NA	NA	NA	NA
WP_011982403.1\|230870_232199_-	AAA family ATPase	A0A141GF08	Brucella_phage	7.0e-209	84.2
WP_115179291.1\|232201_233044_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A141GF09	Brucella_phage	5.0e-160	98.2
WP_011982405.1\|233117_233393_-	hypothetical protein	NA	NA	NA	NA
WP_158304315.1\|233612_233789_-	hypothetical protein	A0A141GF12	Brucella_phage	5.3e-24	94.8
WP_041544888.1\|234390_234696_-	hypothetical protein	A0A2I7RI23	Vibrio_phage	7.4e-05	38.0
WP_011982406.1\|234692_234956_-	hypothetical protein	NA	NA	NA	NA
WP_011982407.1\|234955_235294_-	hypothetical protein	A0A141GF16	Brucella_phage	6.0e-24	51.3
WP_157796386.1\|235350_235512_-	hypothetical protein	NA	NA	NA	NA
WP_011982408.1\|236089_236443_-	hypothetical protein	NA	NA	NA	NA
WP_011982409.1\|236505_237213_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041545249.1\|237299_237494_+	helix-turn-helix domain-containing protein	W6MWX8	Pseudomonas_phage	1.2e-08	56.9
WP_041544891.1\|237490_238366_+	hypothetical protein	NA	NA	NA	NA
WP_147284749.1\|238346_238865_+	hypothetical protein	NA	NA	NA	NA
WP_011982413.1\|239209_239608_+	hypothetical protein	A0A141GF30	Brucella_phage	7.2e-61	96.9
WP_011982414.1\|239683_240187_+	hypothetical protein	NA	NA	NA	NA
WP_011982415.1\|240186_240432_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.3e-06	46.0
WP_086000479.1\|240440_240755_+	hypothetical protein	NA	NA	NA	NA
WP_011982417.1\|240754_241210_+	Myb-like DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011982418.1\|241308_241998_+	hypothetical protein	A0A141GF33	Brucella_phage	2.1e-124	96.1
WP_011982419.1\|241994_243497_+	AAA family ATPase	A0A141GF34	Brucella_phage	9.1e-282	98.6
WP_011982420.1\|243798_244650_+	DNA cytosine methyltransferase	A0A1B1IRA0	uncultured_Mediterranean_phage	8.8e-48	37.1
WP_041544895.1\|244646_244871_+	DUF3310 domain-containing protein	A0A221J776	Mycobacterium_phage	5.0e-27	82.1
WP_011982421.1\|244863_245307_+	hypothetical protein	NA	NA	NA	NA
WP_041544897.1\|245303_245579_+	hypothetical protein	NA	NA	NA	NA
WP_011982422.1\|245575_246148_+	hypothetical protein	NA	NA	NA	NA
WP_043062358.1\|246250_246478_+	hypothetical protein	A0A240F4R3	Ochrobactrum_phage	5.8e-15	68.4
WP_036586392.1\|247114_247360_+	hypothetical protein	NA	NA	NA	NA
WP_041544901.1\|247565_247781_+	hypothetical protein	NA	NA	NA	NA
WP_011982426.1\|248114_248381_+	hypothetical protein	NA	NA	NA	NA
WP_011982427.1\|248486_248903_+	hypothetical protein	NA	NA	NA	NA
WP_011982428.1\|248903_250625_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	3.8e-175	53.4
WP_011982429.1\|250658_251279_+\|head,protease	HK97 family phage prohead protease	A0A0R6PHN0	Moraxella_phage	2.1e-35	50.0
WP_172488788.1\|251278_252700_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	1.1e-114	52.3
WP_158304316.1\|252754_252922_+	hypothetical protein	NA	NA	NA	NA
WP_011982431.1\|252918_253137_+	hypothetical protein	NA	NA	NA	NA
WP_011982433.1\|253452_254778_+\|portal	phage portal protein	F8TVA0	EBPR_siphovirus	3.4e-139	59.4
WP_011982434.1\|254774_255578_+	hypothetical protein	F8TVA1	EBPR_siphovirus	2.6e-25	39.7
WP_011982435.1\|255577_255892_+\|head,tail	phage gp6-like head-tail connector protein	B5WZS4	Pseudomonas_phage	1.2e-13	38.1
WP_011982436.1\|255895_256246_+\|head	phage head closure protein	A0A141GEW5	Brucella_phage	5.8e-54	91.5
WP_011982437.1\|256250_256691_+	HK97 gp10 family phage protein	A0A141GEW6	Brucella_phage	2.3e-39	57.4
WP_011982438.1\|256687_257089_+	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	3.5e-63	88.6
WP_041544904.1\|257088_257292_+	hypothetical protein	A0A141GEW8	Brucella_phage	3.0e-31	95.5
WP_011982439.1\|257370_257826_+\|tail	phage tail protein	A0A141GEW9	Brucella_phage	1.2e-72	87.8
WP_011982440.1\|257825_258221_+	gene transfer agent family protein	B4UTQ4	Rhizobium_phage	6.8e-35	63.2
WP_167874485.1\|258217_258385_+	hypothetical protein	B4UTQ5	Rhizobium_phage	2.7e-09	56.0
WP_011982441.1\|258405_260757_+\|tail	phage tail length tape measure family protein	B4UTQ6	Rhizobium_phage	1.8e-90	33.4
260022:260037	attR	NA	NA	NA	NA
WP_011982442.1\|261101_261779_+	hypothetical protein	A0A141GEX3	Brucella_phage	1.1e-114	96.4
WP_011982443.1\|261778_262444_+	hypothetical protein	A0A141GEX4	Brucella_phage	2.8e-118	97.2
WP_115179292.1\|263172_263562_+	hypothetical protein	A0A141GEY4	Brucella_phage	1.4e-61	80.5
WP_011982446.1\|263552_265325_+	fibronectin type III domain-containing protein	A0A141GEY5	Brucella_phage	0.0e+00	95.3
WP_011982447.1\|265390_267469_+	hypothetical protein	A0A141GEY6	Brucella_phage	7.4e-64	88.0

DBSCAN-SWA_2

918906 : 964633

Streptococcus_phage(14.29%)

protease,integrase,tRNA,transposase,tail

attL 918803:918848|attR 935321:935366

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
918803:918848	attL	NA	NA	NA	NA
WP_012091094.1\|918906_920151_-\|integrase	site-specific integrase	A0A1L6BZH2	Pasteurella_phage	1.2e-16	24.7
WP_012091095.1\|920153_920585_-	hypothetical protein	A0A141GEX7	Brucella_phage	7.4e-19	45.5
WP_040129069.1\|920702_920897_+	hypothetical protein	NA	NA	NA	NA
WP_040129070.1\|920976_921741_+	YdaU family protein	NA	NA	NA	NA
WP_012091097.1\|921730_922045_+	hypothetical protein	NA	NA	NA	NA
WP_012091098.1\|922479_923508_+	hypothetical protein	NA	NA	NA	NA
WP_049768417.1\|924113_924389_+	hypothetical protein	NA	NA	NA	NA
WP_012091100.1\|924399_926673_+\|tail	phage tail tape measure protein	Q0SPL2	Clostridium_phage	7.7e-22	29.3
WP_049768391.1\|926672_926873_+\|tail	phage tail protein	NA	NA	NA	NA
WP_012091101.1\|926893_927520_-	hypothetical protein	NA	NA	NA	NA
WP_012091102.1\|927750_928575_+	hypothetical protein	NA	NA	NA	NA
WP_012091103.1\|928576_929080_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_040129072.1\|929220_929448_+	hypothetical protein	A0A291AUJ1	Sinorhizobium_phage	2.4e-13	55.4
WP_040130042.1\|929457_929829_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040129073.1\|929888_930107_+	hypothetical protein	NA	NA	NA	NA
WP_012091106.1\|930107_930359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_115179309.1\|930815_931727_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.0e-33	41.7
WP_012091108.1\|931716_932310_+	hypothetical protein	NA	NA	NA	NA
WP_041545003.1\|932582_934205_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-104	40.2
WP_011982990.1\|934268_934616_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.5e-14	35.6
WP_011982989.1\|934612_934987_-\|transposase	transposase	NA	NA	NA	NA
WP_012091109.1\|935511_936675_-	amidohydrolase	NA	NA	NA	NA
935321:935366	attR	NA	NA	NA	NA
WP_012091110.1\|936859_937975_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_012091111.1\|937976_939125_+	GTP-binding protein	NA	NA	NA	NA
WP_012091112.1\|939128_939365_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_010657620.1\|939364_940603_-	hypothetical protein	NA	NA	NA	NA
WP_010657619.1\|940989_941943_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_012091113.1\|942078_943002_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.6e-32	31.4
WP_012091114.1\|943004_943241_-	hypothetical protein	NA	NA	NA	NA
WP_010657616.1\|943415_944006_+	shikimate kinase	NA	NA	NA	NA
WP_012091116.1\|944061_945198_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_010657614.1\|945315_946623_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010657613.1\|947221_947536_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_010657612.1\|947722_948352_+	J domain-containing protein	NA	NA	NA	NA
WP_010657611.1\|948580_949567_+	cobaltochelatase subunit CobS	L7TKP0	Rhizobium_phage	8.4e-42	32.2
WP_012091117.1\|949670_951584_+	cobaltochelatase subunit CobT	J9Q7G6	Salmonella_phage	8.2e-17	27.7
WP_012091118.1\|951622_952363_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012091119.1\|952591_953242_-	queuosine precursor transporter	A0A2P1CKM9	Pantoea_phage	4.4e-15	30.7
WP_010657607.1\|953321_953621_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_012091120.1\|954072_954903_+	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_029375811.1\|954920_955343_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012091122.1\|955426_957961_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.2e-129	40.2
WP_012091123.1\|958012_958519_-	hypothetical protein	NA	NA	NA	NA
WP_012091124.1\|958574_959357_-	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	1.1e-07	26.1
WP_012091125.1\|959373_960036_-	septation protein A	NA	NA	NA	NA
WP_012091126.1\|960035_961520_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	1.0e-14	32.3
WP_012091127.1\|961541_962825_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_012091128.1\|962824_963727_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_010657597.1\|964093_964633_+\|protease	AprI/Inh family metalloprotease inhibitor	NA	NA	NA	NA

DBSCAN-SWA_3

1577006 : 1604854

Ochrobactrum_phage(38.89%)

portal,protease,head,plate,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012091541.1\|1577006_1577246_-\|tail	tail protein X	NA	NA	NA	NA
WP_012091542.1\|1577242_1577665_-\|tail	phage tail protein	A0A1X9SH66	Bradyrhizobium_phage	3.3e-11	34.5
WP_012091543.1\|1577686_1580032_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_012091544.1\|1580206_1580539_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012091545.1\|1580545_1581082_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_012091546.1\|1581135_1582641_-	hypothetical protein	A0A193GYC3	Enterobacter_phage	9.2e-40	38.4
WP_041545307.1\|1582750_1583575_-	hypothetical protein	A0A240F4S4	Ochrobactrum_phage	2.8e-91	62.3
WP_012091548.1\|1583669_1584296_-	hypothetical protein	A0A240F4S3	Ochrobactrum_phage	3.5e-41	54.1
WP_012091549.1\|1584295_1585438_-	hypothetical protein	A0A219VH97	Ochrobactrum_phage	2.6e-47	35.3
WP_012091550.1\|1585441_1588765_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	0.0e+00	71.6
WP_012091551.1\|1588773_1589292_-	hypothetical protein	A0A219VHA4	Ochrobactrum_phage	2.3e-35	41.9
WP_012091552.1\|1589292_1590099_-\|tail	phage tail protein	A0A219VHA2	Ochrobactrum_phage	7.3e-84	62.3
WP_012091553.1\|1590098_1590971_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.6e-76	51.9
WP_012091554.1\|1591055_1591469_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_041545042.1\|1591715_1591979_-	PAAR domain-containing protein	F8SJL9	Pseudomonas_phage	1.3e-13	48.1
WP_041545043.1\|1591966_1592194_-	hypothetical protein	NA	NA	NA	NA
WP_012091555.1\|1592193_1592667_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	2.9e-08	40.6
WP_012091556.1\|1592663_1593515_-	hypothetical protein	NA	NA	NA	NA
WP_012091557.1\|1593517_1593922_-	hypothetical protein	NA	NA	NA	NA
WP_041545045.1\|1593922_1594105_-	hypothetical protein	NA	NA	NA	NA
WP_012091558.1\|1594163_1594502_-	DUF2190 family protein	NA	NA	NA	NA
WP_012091559.1\|1594574_1596665_-\|head,protease	HK97 family phage prohead protease	A0A2I7S8L6	Vibrio_phage	1.3e-81	31.9
WP_012091560.1\|1596670_1598221_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	1.8e-70	37.3
WP_041545047.1\|1598220_1598424_-	hypothetical protein	NA	NA	NA	NA
WP_115179306.1\|1598432_1600478_-\|terminase	phage terminase large subunit family protein	B0ZSF0	Halomonas_phage	5.0e-89	34.0
WP_041545053.1\|1600401_1600974_-	hypothetical protein	NA	NA	NA	NA
WP_012091562.1\|1600973_1601660_-	methyltransferase domain-containing protein	A0A0R6PHT7	Moraxella_phage	4.5e-50	45.2
WP_012091563.1\|1601726_1602287_+	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_012091564.1\|1602296_1603541_-	DNA cytosine methyltransferase	A0A0R6PHJ5	Moraxella_phage	1.1e-78	47.6
WP_012091565.1\|1603542_1604079_-	ParB N-terminal domain-containing protein	K4I3Y2	Acidithiobacillus_phage	4.7e-31	53.2
WP_012091566.1\|1604614_1604854_-	hypothetical protein	M4MB75	Vibrio_phage	1.6e-10	63.2

DBSCAN-SWA_4

1609896 : 1620832

Brucella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012091577.1\|1609896_1610568_+	hypothetical protein	V5KSW1	Escherichia_phage	6.8e-11	51.8
WP_012091578.1\|1610570_1611932_+	hypothetical protein	NA	NA	NA	NA
WP_012091579.1\|1611921_1612335_+	hypothetical protein	NA	NA	NA	NA
WP_012091580.1\|1612324_1612819_+	hypothetical protein	A0A223W0M6	Agrobacterium_phage	7.7e-28	40.0
WP_012091581.1\|1612815_1613076_+	hypothetical protein	NA	NA	NA	NA
WP_041545065.1\|1613068_1613272_+	hypothetical protein	NA	NA	NA	NA
WP_012091582.1\|1613268_1613508_+	hypothetical protein	NA	NA	NA	NA
WP_012091583.1\|1613519_1613978_+	deoxycytidine triphosphate deaminase	W6AQU3	Erwinia_phage	1.1e-28	44.9
WP_049768397.1\|1614363_1614609_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_041545071.1\|1614687_1614903_-	hypothetical protein	A0A141GEZ2	Brucella_phage	1.3e-08	44.4
WP_012091585.1\|1614946_1615624_-	SOS response-associated peptidase	NA	NA	NA	NA
WP_041545073.1\|1615630_1615864_-	hypothetical protein	A0A141GF22	Brucella_phage	1.2e-15	59.7
WP_041545074.1\|1615865_1616093_-	hypothetical protein	NA	NA	NA	NA
WP_012091586.1\|1616299_1616605_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	5.1e-06	47.8
WP_012091587.1\|1616591_1616852_-	BrnT family toxin	NA	NA	NA	NA
WP_012091588.1\|1616954_1617473_-	hypothetical protein	NA	NA	NA	NA
WP_012091589.1\|1617501_1619772_-	AAA family ATPase	A0A0F7L738	uncultured_marine_virus	5.6e-57	32.3
WP_012091590.1\|1619773_1620085_-	hypothetical protein	NA	NA	NA	NA
WP_012091591.1\|1620098_1620554_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.0e-42	71.3
WP_012091592.1\|1620565_1620832_-	hypothetical protein	A0A141GEZ5	Brucella_phage	9.9e-14	51.1

DBSCAN-SWA_5

1871415 : 1885355

Synechococcus_phage(16.67%)

portal,protease,head,integrase,terminase,transposase

attL 1864560:1864577|attR 1891692:1891709

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1864560:1864577	attL	NA	NA	NA	NA
WP_012091779.1\|1871415_1873197_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	2.2e-96	34.5
WP_012091780.1\|1873309_1873549_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012091781.1\|1873541_1874084_-	hypothetical protein	A0A088FAX8	Idiomarinaceae_phage	1.5e-16	33.0
WP_012091782.1\|1874122_1874371_-	hypothetical protein	NA	NA	NA	NA
WP_158304326.1\|1874456_1874612_+	hypothetical protein	NA	NA	NA	NA
WP_040129194.1\|1874608_1874845_+	hypothetical protein	NA	NA	NA	NA
WP_041545116.1\|1874972_1875434_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_012091784.1\|1875451_1876747_+\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	1.9e-33	26.8
WP_012091785.1\|1876743_1878519_+\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_012091786.1\|1878521_1878731_+	hypothetical protein	NA	NA	NA	NA
WP_012091787.1\|1878732_1879059_+	DUF2190 family protein	NA	NA	NA	NA
WP_012091788.1\|1879069_1879342_+	hypothetical protein	NA	NA	NA	NA
WP_011982578.1\|1879473_1880420_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	7.1e-14	25.2
WP_040129198.1\|1881046_1881754_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010659760.1\|1882343_1882655_+	DUF2853 family protein	NA	NA	NA	NA
WP_012091790.1\|1882749_1883544_+	thymidylate synthase	A0A2R4A1R4	Microbacterium_phage	1.2e-102	66.3
WP_010659762.1\|1883552_1884077_+	dihydrofolate reductase	A0A1B2IBQ4	Erwinia_phage	5.3e-27	45.2
WP_012091791.1\|1884203_1885355_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
1891692:1891709	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2359407 : 2476817

118

uncultured_Mediterranean_phage(17.54%)

portal,integrase,plate,tRNA,terminase,tail

attL 2357375:2357394|attR 2484366:2484385

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2357375:2357394	attL	NA	NA	NA	NA
WP_012092120.1\|2359407_2362140_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.7e-143	39.3
WP_012092121.1\|2362305_2363085_-	PopZ family protein	NA	NA	NA	NA
WP_010661296.1\|2363313_2364693_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_012092123.1\|2364836_2365505_-	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_010661294.1\|2365838_2366039_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_012092125.1\|2366280_2366925_-	hypothetical protein	NA	NA	NA	NA
WP_012092126.1\|2367115_2367496_+	Fe-S cluster assembly scaffold SufA	A0A218MM00	uncultured_virus	1.2e-09	32.1
WP_012092127.1\|2367519_2367876_+	TfoX/Sxy family protein	NA	NA	NA	NA
WP_040129327.1\|2367913_2369368_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-51	32.9
WP_012092129.1\|2369667_2370441_-	NAD kinase	NA	NA	NA	NA
WP_010661287.1\|2371656_2372076_-	SUF system Fe-S cluster assembly protein	NA	NA	NA	NA
WP_012092130.1\|2372072_2373317_-	cysteine desulfurase	Q2XUY6	environmental_halophage	9.1e-102	42.9
WP_012092131.1\|2373384_2374662_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_012092132.1\|2374675_2375431_-	Fe-S cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	2.8e-05	26.2
WP_012092133.1\|2375499_2377023_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_012092134.1\|2377365_2377599_+	hypothetical protein	NA	NA	NA	NA
WP_012092135.1\|2377606_2378767_-	cysteine desulfurase	H7BUW1	unidentified_phage	1.6e-23	35.3
WP_010661280.1\|2378962_2379637_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010661279.1\|2379771_2380104_+	multidrug transporter	E5E3Y9	Acinetobacter_phage	2.7e-08	35.0
WP_012092136.1\|2380358_2381612_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.5e-64	36.3
WP_012092137.1\|2381665_2385064_-	RNA-binding protein	NA	NA	NA	NA
WP_012092138.1\|2385351_2385816_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_012092139.1\|2385819_2386647_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_012092140.1\|2386776_2388129_+	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	5.4e-23	46.6
WP_105529024.1\|2388195_2389324_-	peptide chain release factor 2	G0YKC3	Acinetobacter_phage	9.4e-05	52.9
WP_010661272.1\|2389478_2391938_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_036586814.1\|2392202_2393441_-	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	4.0e-09	24.9
WP_010661270.1\|2393977_2394163_-	hypothetical protein	NA	NA	NA	NA
WP_012092143.1\|2394165_2396946_+	ribonuclease E/G	NA	NA	NA	NA
WP_040129331.1\|2397041_2398205_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012092145.1\|2398395_2399811_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_012092146.1\|2399858_2400665_+	DsbA family protein	NA	NA	NA	NA
WP_010661265.1\|2400909_2401383_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_012092148.1\|2401384_2401849_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_010661263.1\|2401893_2403252_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_012092150.1\|2403257_2403872_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_010661261.1\|2403882_2404353_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_010661260.1\|2404550_2404961_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_012092151.1\|2405158_2405662_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012092152.1\|2405661_2407164_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_012092153.1\|2407323_2408781_-	trigger factor	NA	NA	NA	NA
WP_012092154.1\|2409171_2410437_+	hypothetical protein	NA	NA	NA	NA
WP_012092155.1\|2410979_2412254_+	type VI secretion protein ImpB	NA	NA	NA	NA
WP_012092156.1\|2412258_2412513_+	hypothetical protein	NA	NA	NA	NA
WP_012092157.1\|2412586_2412868_+	hypothetical protein	NA	NA	NA	NA
WP_012092158.1\|2412972_2413398_-	hypothetical protein	NA	NA	NA	NA
WP_012092159.1\|2413635_2414019_-	hypothetical protein	NA	NA	NA	NA
WP_012092160.1\|2414018_2414525_-	lysozyme	A0A0K1Y6F2	Rhodobacter_phage	2.7e-28	41.8
WP_041545154.1\|2414514_2414736_-	hypothetical protein	NA	NA	NA	NA
WP_012092161.1\|2414744_2415287_-	hypothetical protein	A0A0F6R516	Sinorhizobium_phage	1.1e-30	41.9
WP_012092162.1\|2415314_2416469_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	1.7e-33	36.1
WP_041545155.1\|2416500_2417199_+	hypothetical protein	NA	NA	NA	NA
WP_012092163.1\|2417200_2417413_-\|tail	tail protein X	A0A077K8R0	Ralstonia_phage	3.1e-10	49.2
WP_012092164.1\|2417417_2417843_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.9e-12	33.9
WP_012092165.1\|2417842_2420224_-\|tail	phage tail tape measure protein	A0A088FV68	Escherichia_phage	5.2e-53	36.8
WP_012092166.1\|2420342_2420621_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012092167.1\|2420648_2421155_-\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	1.0e-19	34.2
WP_012092168.1\|2421212_2422643_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1X9SGY4	Bradyrhizobium_phage	1.4e-77	37.2
WP_012092169.1\|2422694_2423252_-	hypothetical protein	R9TP62	Rhizobium_phage	1.7e-28	49.1
WP_012092170.1\|2423261_2424839_-\|tail	phage tail protein	R9U0V1	Rhizobium_phage	1.2e-77	43.7
WP_012092171.1\|2424843_2425503_-\|tail	phage tail protein I	A0A219Y8Y4	Aeromonas_phage	7.9e-20	39.1
WP_012092172.1\|2425499_2426549_-\|plate	baseplate J/gp47 family protein	E5FFH3	Burkholderia_phage	2.1e-27	32.7
WP_012092173.1\|2426545_2426929_-	GPW/gp25 family protein	A0A193GYY8	Enterobacter_phage	2.3e-19	49.0
WP_158304329.1\|2426932_2427103_-	hypothetical protein	NA	NA	NA	NA
WP_012092174.1\|2427120_2427384_-	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	8.2e-21	85.1
WP_012092175.1\|2427383_2427821_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	1.5e-06	39.5
WP_012092176.1\|2427820_2428597_-	hypothetical protein	A0A0A8IKZ7	Aurantimonas_phage	1.6e-40	43.1
WP_012092177.1\|2428596_2428971_-	hypothetical protein	A0A0A8IN54	Aurantimonas_phage	3.4e-12	37.7
WP_012092178.1\|2428976_2429300_-	DUF2190 family protein	A0A2I7S8N5	Vibrio_phage	9.8e-08	36.4
WP_049768403.1\|2429368_2431009_-	hypothetical protein	B7SYD7	Stenotrophomonas_phage	2.6e-35	29.2
WP_041545157.1\|2431107_2431761_-	hypothetical protein	B7SYD7	Stenotrophomonas_phage	3.4e-31	42.9
WP_012092179.1\|2431747_2433280_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	6.4e-81	38.5
WP_041545160.1\|2433279_2433474_-	hypothetical protein	NA	NA	NA	NA
WP_012092180.1\|2433476_2435294_-\|terminase	phage terminase large subunit family protein	D6PFE7	uncultured_phage	2.3e-69	32.9
WP_041545162.1\|2435208_2435943_-\|terminase	terminase small subunit	NA	NA	NA	NA
WP_012092182.1\|2436144_2436714_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	3.4e-27	44.5
WP_080514323.1\|2437093_2437750_-	hypothetical protein	A0A068C9G5	Rhizobium_phage	2.1e-09	27.0
WP_012092184.1\|2437736_2438915_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	7.6e-74	46.7
WP_012092185.1\|2438914_2439574_-	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	5.8e-71	62.6
WP_012092186.1\|2439570_2440086_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	9.8e-18	48.4
WP_012092187.1\|2440082_2440364_-	hypothetical protein	NA	NA	NA	NA
WP_012092188.1\|2440360_2441047_-	NERD domain-containing protein	A0A240F4W5	Ochrobactrum_phage	3.3e-93	76.5
WP_012092189.1\|2441046_2442354_-	ParB N-terminal domain-containing protein	A0A0M3LPV8	Mannheimia_phage	1.2e-24	39.8
WP_041545164.1\|2442465_2442732_-	hypothetical protein	NA	NA	NA	NA
WP_049768424.1\|2442728_2443145_-	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	2.3e-25	48.3
WP_041545347.1\|2443882_2444578_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041545166.1\|2445004_2445235_+	hypothetical protein	NA	NA	NA	NA
WP_158304330.1\|2445641_2445800_+	hypothetical protein	NA	NA	NA	NA
WP_012092194.1\|2445813_2446098_+	hypothetical protein	NA	NA	NA	NA
WP_012092195.1\|2446090_2447197_+	hypothetical protein	A0A0M4REI4	Salmonella_phage	5.6e-26	58.7
WP_012092196.1\|2447431_2447833_+	hypothetical protein	NA	NA	NA	NA
WP_012092197.1\|2447829_2448642_+	hypothetical protein	NA	NA	NA	NA
WP_080514344.1\|2448638_2449403_+	hypothetical protein	A0A219YFC7	Ochrobactrum_phage	2.4e-36	40.0
WP_012092199.1\|2449399_2449780_+	DUF4031 domain-containing protein	R9TSA1	Rhizobium_phage	6.3e-30	61.9
WP_158304331.1\|2449776_2449950_+	hypothetical protein	NA	NA	NA	NA
WP_012092200.1\|2449946_2451311_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012092201.1\|2451786_2452356_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_012092202.1\|2452352_2453483_-	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_006466676.1\|2453757_2453904_+	DUF1127 domain-containing protein	A0A0F6YPC3	Sinorhizobium_phage	4.1e-06	54.5
WP_012092203.1\|2454170_2455601_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_012092204.1\|2455653_2456487_-	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_012092205.1\|2456491_2456881_-	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_086000491.1\|2456883_2459184_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.2e-51	44.7
WP_010661250.1\|2459326_2459668_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.4e-12	41.5
WP_012092207.1\|2459827_2460691_+	ATP-binding protein	NA	NA	NA	NA
WP_012092208.1\|2460759_2462076_-	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	8.7e-18	40.2
WP_012092209.1\|2462258_2462927_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.3e-13	36.9
WP_012092210.1\|2462930_2463707_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-38	38.3
WP_040130146.1\|2463740_2465024_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-101	46.0
WP_012092212.1\|2465099_2465924_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-51	45.3
WP_012092213.1\|2465920_2466541_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_010661242.1\|2466660_2466891_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	9.1e-08	67.4
WP_012092214.1\|2467036_2467765_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.6e-42	45.9
WP_012092215.1\|2467757_2468609_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.2e-32	35.2
WP_012092216.1\|2468682_2469702_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	3.7e-16	36.4
WP_011982869.1\|2469855_2471259_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	3.5e-17	25.0
WP_012092217.1\|2471766_2474748_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_012092218.1\|2475059_2476817_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
2484366:2484385	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2842538 : 2864298

Leptospira_phage(22.22%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012092477.1\|2842538_2844188_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.9e-62	31.8
WP_012092478.1\|2844303_2845767_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_086000475.1\|2846005_2847093_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.1e-46	38.6
WP_172488798.1\|2847413_2847815_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012092479.1\|2847819_2849199_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_012092480.1\|2849212_2849995_-	trehalose-phosphatase	NA	NA	NA	NA
WP_012092481.1\|2850073_2851489_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.4e-58	31.5
WP_012092482.1\|2851492_2852917_-	phosphomannomutase	NA	NA	NA	NA
WP_011982578.1\|2853152_2854099_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	7.1e-14	25.2
WP_012092483.1\|2854455_2855334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_012092484.1\|2855330_2856407_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-97	54.3
WP_012092485.1\|2856416_2856968_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-29	44.0
WP_012092486.1\|2856967_2857849_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.9e-94	61.5
WP_012092487.1\|2857970_2858807_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_086000495.1\|2859108_2859944_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012092489.1\|2860012_2860402_+\|transposase	transposase	NA	NA	NA	NA
WP_012092490.1\|2860398_2860743_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.3e-09	34.4
WP_012092492.1\|2862379_2862676_-	hypothetical protein	NA	NA	NA	NA
WP_041545235.1\|2862675_2864298_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.2e-105	40.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009671

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009668

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_009670

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_009667

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection