CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009720	Xanthobacter autotrophicus Py2, complete genome	3 crisprs	csa3,cas3,DEDDh,WYL	0	1	7	0
NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009720_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009720_1

300774-300908

Orphan

Consensus_repeat	Method
GCCGGGACGGCCGGGAGGGCCACCGGCACCGGGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009720_1

>merge|NC_009720|1|300774-300908|CRISPRCasFinder
GCCGGAACCGCCGGGACGCTGCTGGGCGCCGGGACGGCCGGGAGGGCCACCGGCACCGGGACGGCGATCGGCACCGGGGCCGCCGGAGCGCGGCGGCTGGCCGGGACGGCCGGGAGGGCCACCGGCGCCGGGACG

>NC_009720|1|1|300774-300908|CRISPRCasFinder
GCCGGAACCGCCGGGACGCTGCTGGGCGCCGGGACG	GCCGGGAGGGCCACCGGCACCGGGACGGCGATCGGCACCGGGGCCGCCGGAGCGCGGCGGCTG
GCCGGGACGGCCGGGAGGGCCACCGGCGCCGGGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009720.1\|WP_157048191.1\|310058_310424_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NC_009720.1\|WP_011995958.1\|307532_308816_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|180404
NC_009720.1\|WP_011995948.1\|294666_296262_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173860
NC_009720.1\|WP_011995955.1\|305227_305734_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_009720.1\|WP_011995949.1\|296546_297638_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235442
NC_009720.1\|WP_011995954.1\|303991_304852_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_009720.1\|WP_081436967.1\|310552_311311_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_009720.1\|WP_011995953.1\|302396_303992_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NC_009720.1\|WP_081436966.1\|308719_309916_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377472
NC_009720.1\|WP_011995956.1\|306061_306523_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NC_009720.1\|WP_011995952.1\|301648_302368_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|236401
NC_009720.1\|WP_011995947.1\|293981_294251_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_009720.1\|WP_011995957.1\|306684_307275_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NC_009720.1\|WP_011995945.1\|290784_291150_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|238126
NC_009720.1\|WP_011995946.1\|291507_293700_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_009720.1\|WP_011995950.1\|297634_298090_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_009720.1\|WP_049775833.1\|286291_289096_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235342
NC_009720.1\|WP_011995941.1\|285723_285888_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NC_009720.1\|WP_041575039.1\|289199_290198_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225213
NC_009720.1\|WP_041575040.1\|290225_290702_-\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104

Protein	Function_ID	Function_description	E-value
NC_009720.1\|WP_157048191.1\|310058_310424_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	8.92753e-14
NC_009720.1\|WP_011995958.1\|307532_308816_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|180404	PRK06108, PRK06108, pyridoxal phosphate-dependent aminotransferase.	0
NC_009720.1\|WP_011995948.1\|294666_296262_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173860	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_009720.1\|WP_011995955.1\|305227_305734_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.10898e-10
NC_009720.1\|WP_011995949.1\|296546_297638_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235442	PRK05389, truB, tRNA pseudouridine synthase B; Provisional.	7.30645e-161
NC_009720.1\|WP_011995954.1\|303991_304852_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.26192e-54
NC_009720.1\|WP_081436967.1\|310552_311311_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	9.83294e-63
NC_009720.1\|WP_011995953.1\|302396_303992_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NC_009720.1\|WP_081436966.1\|308719_309916_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|377472	pfam05145, AbrB, Transition state regulatory protein AbrB. Bacillus subtilis respond to a multitude of environmental stimuli by using transcription factors called transition state regulators (TSRs). They play an essential role in cell survival by regulating spore formation, competence, and biofilm development. AbrB is one of the most known TSRs, acting as a pleotropic regulator for over 60 different genes where it directly binds to their promoter or regulatory regions. Many other genes are indirectly controlled by AbrB since it is a regulator of other regulatory proteins, including ScoC, Abh, SinR and SigH. Hence, AbrB is considered a global regulatory protein controlling processes such as Bacillus subtilis growth and cell division as well as production of extracellular degradative enzymes, nitrogen utilization and amino acid metabolism, motility, synthesis of antibiotics and their resistant determinants, development of competence, transport systems, oxidative stress response, phosphate metabolism, cell surface components and sporulation. AbrB is a tetramer consisting of identical 94 residue monomers. Its DNA-binding function resides solely in the N-terminal domain (AbrBN) of 53 residues. Although it does not recognize a well-defined DNA base-pairing sequence, instead, it appears to target a very weak pseudo consensus nucleotide sequence, TGGNA-5bp-TGGNA, which allows it to be rather promiscuous in binding. The N-terminal domains of very similar sequences are present in two more Bacillus subtilis proteins, Abh and SpoVT. Mutagenesis studies suggest that the role of the C-terminal domain is in forming multimers.	2.42903e-62
NC_009720.1\|WP_011995956.1\|306061_306523_+\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	7.2495e-24
NC_009720.1\|WP_011995952.1\|301648_302368_-\|RNA-binding-protein	gnl\|CDD\|236401	PRK09190, PRK09190, RNA-binding protein.	1.16462e-70
NC_009720.1\|WP_011995947.1\|293981_294251_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	9.2594e-55
NC_009720.1\|WP_011995957.1\|306684_307275_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.56828e-117
NC_009720.1\|WP_011995945.1\|290784_291150_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|238126	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.	2.25386e-09
NC_009720.1\|WP_011995946.1\|291507_293700_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_009720.1\|WP_011995950.1\|297634_298090_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	6.49255e-45
NC_009720.1\|WP_049775833.1\|286291_289096_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235342	PRK05092, PRK05092, PII uridylyl-transferase; Provisional.	0
NC_009720.1\|WP_011995941.1\|285723_285888_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	1.78048e-05
NC_009720.1\|WP_041575039.1\|289199_290198_+\|phosphotransferase	gnl\|CDD\|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	2.65318e-53
NC_009720.1\|WP_041575040.1\|290225_290702_-\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	1.93363e-19

>NC_009720.1|WP_011995950.1|297634_298090_-|30S-ribosome-binding-factor-RbfA
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYVMPLGGKDITPVIKALAANARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLRSPKVVRDLDDTSSDDTSPDANTDTDKETDAE
>NC_009720.1|WP_011995949.1|296546_297638_-|tRNA-pseudouridine(55)-synthase-TruB
MTAPFAADAAAPILAAEADAPVAADATAAQALPDGAEAPRASREQDNRPRAPKRDLDGWVLLDKPTGMTSTQAVAVVKRIFGARKAGHAGTLDPLASGCLPIAFGEATKTVPYVMDGRKTYRFTVRFGVETDTDDSEGKAVVTSDHRPTDADIVAALAAFRGEIMQVPPAYSALKIGGERAYDLAREGEEVVLQPRPVTIFRIELVERPDADHAVLEAECGKGTYVRAIARDLGRMLDARGHVSALRRACVGPFLEEDLVPLDEMRERAEAGEEALMDALDPVALALEEIPQIAVTPPDAHRLRCGQSVILRGRDAPIVQGHAAITCQGALIAIGDVDAGEIFPHRVFNWGQKDKKPPRRGKR
>NC_009720.1|WP_011995948.1|294666_296262_-|ABC-transporter-substrate-binding-protein
MAFRHSLAAAFFAAVALAAPARAESVVRYGISMADIPQTTGQPDRGAGAYQFTGYTLYDPLVAWEMNVADRPGKLVPGLATEWKVDPADQKKWIFTLRKGVKFHDGSDFNADAVVWNLDKVLDEKAPHYDKRQAAQVKTRLPGIASWKKIDDNTVEITTKDVDSFFPYQMLWFLVSSPAQYEKLGRDWDKFAQSPSGTGPFKQDKLVPRERLELVKNPDYWDKTRLPKTDRMILIPMPEALTRTNALLAGQVDLIETPAPDAVPQLKSAGMKIVTNVTPHVWNYHLSVLPGSPWTDVRLRKALNLAVDRDGVVELMNGLAKPAKGQVDVSSPWFGKPEFDLKYDPEAAKKLVKEAGYSPEKPLKATFIIAAGGTGQMLSLPMNEFLQASFKEIGVDVEFKVVELEALYTAWRKGAKDPSNAGITANNIAYVTSDPLYALIRFFDSRQVAPVGVNWGFYANPKVDALIDEAKHTFDTQKQDALLAQVHQTVVDDAVLVWVVHDTNPHALSPKVKSFVQAQHWFQDLTTIGMQ
>NC_009720.1|WP_011995947.1|293981_294251_-|30S-ribosomal-protein-S15
MSITAERKQALIKDFGAKDGDTGSPEVQVAILTERITNLTGHFKSHHKDNHSRRGLLKLVSQRRSLLDYLKKKDEGRYKSLIERLGIRR
>NC_009720.1|WP_011995946.1|291507_293700_-|polyribonucleotide-nucleotidyltransferase
MFDIHREELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAHDLENDPDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVAGTGDAVLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVSEVESKVREIAEADLRAAYKIKQKQDRYAAVGAAKSKVKKYYEELALDGTKVPTAQVVSDVLKALEAKIVRWNILDDGIRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAVLSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEMAKALTTARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKIASASGDAIKAAINWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHVSQMANERVAKPSDVVKEGDKVKVKLMGFDERGKTRLSMKVVDQTTGEDLEAKAKAERDAARAAAPAATGDEAGAAE
>NC_009720.1|WP_011995945.1|290784_291150_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MPIITFRSTTTKDKRAYATAGDTGTILTVARANGVKIPFECQEGECGSCLIRVEYVEGKPRMAIALTEREKTKLKELGKITEEQITDAEVNDVAPPYRLACQFIAREEEVIIHYEHCPAEA
>NC_009720.1|WP_041575040.1|290225_290702_-|ferritin-family-protein
MDSVGEFLAYAVKLEEEAALRFGELADVMESCGNKDVAKLFRRLSDYSRMHLADARARATFREMPDLKAGEYNWPDLESPETAGIWAADPFIGHGEALEIARDAEEASFRYYKKIFETTTDPEIKVLAKEFFEEESEHVTEIHKWIDAYKEGRRVSAG
>NC_009720.1|WP_041575039.1|289199_290198_+|phosphotransferase
MRGAGRVLYDAEYLTRIEAIIRVHLPEWGLPPDAALNLMSISENATFRATAGAGDLVLRVYRPGYHTPAEIRSELAWIEALRAEDVVPTPRIIPTLDGRRLVEIDDGGTPRRMAAFAFVPGAEPQEGADLPGWFGHLGAIHARLHAHARRWARPQGFTRKVWDFESMLGQRPLWGDFRAALGLDAPGRALLERTAGVLKDRLAPLSQPGSFGLIHADLRLANLLTEGEKLTLIDFDDCGFSWFLYDFAAAVSFIEHSPVVPELKAAWLEGYRTRAPLPDDAEDALDVFVMLRRMLLTAWVASHAETPTAQAMGVAYTEGTLGLAEGFLARRD
>NC_009720.1|WP_049775833.1|286291_289096_+|[protein-PII]-uridylyltransferase
MPIVRSPKASRVIGEPFEGTKLRVEAREIAAAHKGRDLELRNAVVARLKKALHDGRAEAERQLRQDGCGRCCSMRLSALQDAVIASAHEVATSFLYPADNPSRSERMAVAAVGGYGRGMMAPGSDTDILFLLPYKQTAWGESVAEAMLYMLWDLGLKVGHATRSVDECLRQARADFTIRTSILEARYIVGDKGLFEDLEKRFDKEVVEGTGAEFVAAKMAEREERLRRSGQSRYLVEPNVKESKGGLRDLHTLFWIAKYVYRVQTTDELVQKGVFTREEARLFTKCEDFLWSVRCHLHFLTGRAEDRLSFDVQREMAQRLGYTEHPGQRDVERFMKHYFLVAKDVGDLTAILSAALEARHDKPVPGLKGMVERFRAGSRRITLKETPDFILDHDRLNVIDDQAFKRDPVNLIRIFHVADKRNLALHPDATQLAARSLALIDASVRENPEANRLFLEIVTSKNAPETVLRRMNEVGVLGRFLPEFGKIVAMMQFNMYHHYTVDEHLLRCIGVLSEIERKVNPENGLANDLMGTVKNRNLLYVALLLHDIAKGRPEDHSVAGARIARRICPRLGLSPVETETVVWLVEQHLVMSQVAQSRDLSDRKTIENFAAVVQNLERMKLLTILTTADIKAVGPGTWNGWKAQLLKTLYYETEPVLTGGFSEVDRGKRVSAAQSQFRAQLADWSDEKVAAYVARHYPPYWLRVDLDTKLRHARFIDEAETAGRSIATHATLEAGRGITTLTVVAPDHPKLLSIIAGACAAAGANIVDAHISTTTDGLALDTIALRRAFDRDEDELRRAGRIQEAVEQALTGEVRLPEVMARKIPKGRRTFTVEPEVTVNNAWSNRHTVVEVSGLDRPGLLFALTNTLSRLNLNIASAHVATFGERAVDVFYVTDLMGAKITGAARQSTIRRALVAVFEGPAEDEEAPRRAARG
>NC_009720.1|WP_011995941.1|285723_285888_-|Flp-family-type-IVb-pilin
MKLLFWRFIREEEGSTALEYGLIAAGLSIAIVTVLVQIAATFARLQASSAAAGN
>NC_009720.1|WP_011995952.1|301648_302368_-|RNA-binding-protein
MVDEDETDEGLRSLAAARAPLSRLCLATRRVTPVADMLRFVMGPDGAIVPDITRRLPGRGAWISATRADLETALKRKVFGRAFKGKGTTSPDLADLVDTLLEKDARSALSLANKAGKVVTGTTKVEAALASGDVRVLLHAQDARPDGVRKLKALTRQVENAGARQVSSVDCFTGIELDLALGRSNVVHAALLAHPTTEGFLERCHKLLRWRTGTSGTEEHGQGEGHAHVTGRMQGTDTE
>NC_009720.1|WP_011995953.1|302396_303992_-|transcription-termination/antitermination-protein-NusA
MVAVSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINAKTGELRLARHLLVVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQKVREAERDRQYDEYKDRIGDVVNGLVKRVEYGNVVVDLGRGEGILRRDELLPRETVKTGDRIRAYVYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAVISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVLDEDRERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKMFAEALDLDEMMGQLLTSEGFTSVEEIAYVQLQELASIEGFDEDTAAELQARALKHLAEVEEALDARRIELGVDDDLKSVPGVTSKMLVAFGENDIKSVEDLAGCATDDLIGWTERKDGETVRHAGALDGFELSREDAEALVMQARVAAGWIEADEPAADGDDAAAGEA
>NC_009720.1|WP_011995954.1|303991_304852_-|ribosome-maturation-factor-RimP
MTEIQAVLDDPNEPRLITETGVAARVAAIASGVLGALGYRLVRVKVTNRDGGTLQIMAERPDGTMSIDDCEAASRALSPVLDVEDPISSAYRLEMSSPGIDRPLVRQSDFVRWAGHEVKVEMARPVDGRKRFRGILIGAEDGIAVVRRLDAPATEEPTVRLPVADIHDAKLMLTDALIREALRAAKAAGQAIDEEAEAFLDGEDGDDTGVDAGDPDQDDADDALAEATAQPAAPYKGPSRKDGGNKLVGRKAKGKKASPKKSNAKKKAGLETAASSANASTVKETH
>NC_009720.1|WP_011995955.1|305227_305734_-|universal-stress-protein
MTTTATPRRSREPVHRRKFLVVVDDTPECDRAIYFAARRAAGTQGGMVLLGVLELEGVAQQWLGVADLMRAEAHEEMEARLQKFAARARQVAGISPELVIKEGSPAEAIARTIAEDHDIAILVLAAGVGKDGPGPLVTVLAAGHAARFPVPITIVPGALTDAELDAIA
>NC_009720.1|WP_011995956.1|306061_306523_+|heme-binding-protein
MTNTATSTATDLSLEAAQTIVTAALAHARAGAMNPLAVCVLDARGALKAYAAEDGTSLNRGEIARGKANGALALGMGSRSLFKRAKDQPFFISAATSAIGGSLVPVPGGVLIRSAAGSIIGVVGISGDTSDNDEASALAGITAAGLVGDPGQD
>NC_009720.1|WP_011995957.1|306684_307275_-|malonic-semialdehyde-reductase
MTTKIDQAAIDRLFLEARSQNGWTDQPVSEAEIRALYDLVKYGPTSANTQPARFVFVTSPEAKERLRPALSPGNVKALAAPVIVLIGYALDFHDKIPEVFPHNPGFRDMFVNNPAAIEPHAFRNSSLQGAYLILAARALGLDVGPMSGFDAAKVDAEFFPGGTVKTNFIAAIGHGDPSKVMPRLPRLAFADAAQIV
>NC_009720.1|WP_011995958.1|307532_308816_+|pyridoxal-phosphate-dependent-aminotransferase
MNSRAFPAPEDPSATPESSHLPLTPVGAGEDPYLERVRDPIRTLPESGIVEVMNYGRDRPGMIPLWAGEGDVATPPFICEAAATALHAGETFYTWQRGLPELRGAIARYMARTYGIPENPDRYFVTGSGMQAIHIALAMTAGAGDEVIIPSPSWPNAAAAAQKAGARPVYVPFAYGKDGFSLDHERLAQAITPRTRAIFLNTPANPTGFVATHDDLRAVLALARRHGLWIIADEIYGRFYYGDEPRAPSFHDVMDEGDHILFVQTFSKNWAMTGWRVGWIEADPRLGQVIENLIQYSTSGVAAFMQRGAVAALDQGEDFVAQQIARARKGRDRVADALIATGKVDLVKPPGAFYLFFGIAGRSDVRSLGLTLVDEANVGLAPGTAFGPGGEGFMRLCFARGDAQLAEASRRLVAWLTGDGQTGAGAA
>NC_009720.1|WP_081436966.1|308719_309916_+|AbrB-family-transcriptional-regulator
MLCPGRCPARRGEPPPRGLAHGRRADGSRRGVRPLASHLRSAVAAAITLGAGALGGGVFAALGLPAAWISGALVVSIALAVAGVRIAVPEWIRFLAFIVLGTSMGTALTPETFARAATWPISMACLGASVLATMAGGALFLNRVAGWSRETAFWASAPGAFGTVVAMAADTSADLRKVAFAQALRLFLLVAALPNVLGATGLTAGGLPPPPHVSTALEVAILLGVCVTTGLGAAWLKVPGGLILGALAGSAALHATSLSSAVLPQAFIVPAFVVLGASVGVRFLGTTLGTIRAYFFASLGAFLVAVSISTLFALLAAWLTGDDLGKLVTAFAPGALEAMTALGFALGYDPAFMSAHHLFRFAGLSVALPVAARLLFAAVEEVEEVTRHAGPPEGEHTK
>NC_009720.1|WP_157048191.1|310058_310424_+|DoxX-family-membrane-protein
MASLFLPAGIGKIGNVAGFAASLAAKGVPMPTLMTYLTIAVEVGGGLLLILGFIPRIVAVVLAGFVVIATATSHIFWLIPDPAAAAGQQIHFFKNAAIIGGLLVYFAAGPGRFALGRKEWN
>NC_009720.1|WP_081436967.1|310552_311311_-|M48-family-metallopeptidase
MLFRRQDPKPPAQRAAEWIELLLDDGPLRVAVRRNPQARRLTLRVRAAARDVTLTAPPHVPLAFARDFVQRHREWVRVRLVRLPEKVLFEPGALIPLHGTPHRIVHCPQARGTVWVAPDGDGQPALHVAGEAPHLARRVQDYLKREARQALTTAVRHYAGALKVEVGRITLRDTASRWGSCSAQGDLSFSWRLVMAPRFVLDYLAAHEVAHRLEMNHGPRFWRLVEQVCPNRREAEAWLRRHGSDLHRYGGD

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Crispr_ID: NC_009720_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009720_2

1370118-1370212

Unclear

Consensus_repeat	Method
TCGCGGATGCGTCAGCATCCTTGCGATCCG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_009720_2

>merge|NC_009720|2|1370118-1370212|CRISPRCasFinder
TCGCGGATGCGTCAGCATCCTTGCGATCCGACCCGACAAGCCCGCGCGGCGCCTGAGCGAGGGGGTCGCGGATGCGCCAGCATCCTTGCGATCCG

>NC_009720|2|2|1370118-1370212|CRISPRCasFinder
TCGCGGATGCGTCAGCATCCTTGCGATCCG	ACCCGACAAGCCCGCGCGGCGCCTGAGCGAGGGGG
TCGCGGATGCGCCAGCATCCTTGCGATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009720.1\|WP_012113216.1\|1375632_1375869_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NC_009720.1\|WP_041575219.1\|1367950_1368829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366517
NC_009720.1\|WP_012113210.1\|1368891_1370091_+\|putative-lipid-II-flippase-FtsW	unknown	unknown	gnl\|CDD\|274232
NC_009720.1\|WP_041575217.1\|1364918_1367642_-\|ligase-associated-DNA-damage-response-DEXH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|274994
NC_009720.1\|WP_012113205.1\|1362503_1363109_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NC_009720.1\|WP_012113218.1\|1378136_1378829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NC_009720.1\|WP_012113220.1\|1380018_1380954_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_009720.1\|WP_086017064.1\|1361124_1362054_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226596
NC_009720.1\|WP_012113212.1\|1371448_1372861_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_009720.1\|WP_012113215.1\|1374081_1375365_-\|crotonyl-CoA-carboxylase/reductase	unknown	unknown	gnl\|CDD\|176208
NC_009720.1\|WP_012113203.1\|1360022_1361066_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_009720.1\|WP_012113213.1\|1372844_1373414_-\|hypothetical-protein	unknown	unknown	unknown
NC_009720.1\|WP_012113206.1\|1363240_1363822_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_009720.1\|WP_041576456.1\|1363876_1364278_-\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|226345
NC_009720.1\|WP_012113201.1\|1357621_1358473_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|180402
NC_009720.1\|WP_012113202.1\|1358484_1360026_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236036
NC_009720.1\|WP_081436996.1\|1370231_1371452_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NC_009720.1\|WP_012113214.1\|1373518_1373962_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
NC_009720.1\|WP_012113219.1\|1378982_1379846_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NC_009720.1\|WP_012113217.1\|1376065_1378039_+\|protein-meaA	unknown	unknown	gnl\|CDD\|239653

Protein	Function_ID	Function_description	E-value
NC_009720.1\|WP_012113216.1\|1375632_1375869_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	0.000487557
NC_009720.1\|WP_041575219.1\|1367950_1368829_+\|hypothetical-protein	gnl\|CDD\|366517	pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.	0.0047499
NC_009720.1\|WP_012113210.1\|1368891_1370091_+\|putative-lipid-II-flippase-FtsW	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.61157e-115
NC_009720.1\|WP_041575217.1\|1364918_1367642_-\|ligase-associated-DNA-damage-response-DEXH-box-helicase	gnl\|CDD\|274994	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated. Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H.	0
NC_009720.1\|WP_012113205.1\|1362503_1363109_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.97543e-136
NC_009720.1\|WP_012113218.1\|1378136_1378829_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	1.59307e-05
NC_009720.1\|WP_012113220.1\|1380018_1380954_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.22003e-21
NC_009720.1\|WP_086017064.1\|1361124_1362054_-\|hypothetical-protein	gnl\|CDD\|226596	COG4111, COG4111, Uncharacterized conserved protein [General function prediction only].	3.46263e-151
NC_009720.1\|WP_012113212.1\|1371448_1372861_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_009720.1\|WP_012113215.1\|1374081_1375365_-\|crotonyl-CoA-carboxylase/reductase	gnl\|CDD\|176208	cd08246, crotonyl_coA_red, crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NC_009720.1\|WP_012113203.1\|1360022_1361066_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	6.12593e-165
NC_009720.1\|WP_012113206.1\|1363240_1363822_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	1.15224e-47
NC_009720.1\|WP_041576456.1\|1363876_1364278_-\|metallopeptidase-family-protein	gnl\|CDD\|226345	COG3824, COG3824, Predicted Zn-dependent protease [General function prediction only].	4.42534e-52
NC_009720.1\|WP_012113201.1\|1357621_1358473_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|180402	PRK06106, PRK06106, carboxylating nicotinate-nucleotide diphosphorylase.	1.73881e-167
NC_009720.1\|WP_012113202.1\|1358484_1360026_-\|L-aspartate-oxidase	gnl\|CDD\|236036	PRK07512, PRK07512, L-aspartate oxidase; Provisional.	0
NC_009720.1\|WP_081436996.1\|1370231_1371452_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	2.27853e-136
NC_009720.1\|WP_012113214.1\|1373518_1373962_-\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	2.05166e-38
NC_009720.1\|WP_012113219.1\|1378982_1379846_+\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	2.20934e-83
NC_009720.1\|WP_012113217.1\|1376065_1378039_+\|protein-meaA	gnl\|CDD\|239653	cd03681, MM_CoA_mutase_MeaA, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.	0

>NC_009720.1|WP_012113210.1|1368891_1370091_+|putative-lipid-II-flippase-FtsW
MMSRADRTVLSEWWWTVDRALLAALCGLMVIGIILCLAASPAVAARLGIADPFHFVNRQVLFLVPAAVVMIATSFLSPRALRRICMVVFAIFFVLLMATLVVGPEVKGARRWLTIAGVTVQPSEFIKPAFVILAAWLFAESTRRPEMPATLLAFGLLGSVLGLLVKQPDFGQSLLISLVWASLFFLAGLRWIWMVGLVGVGAGGGFIAYMTVSHVQKRINRFLNPDSGDTYQIDAALNSFRNGGWFGQGPGEGTMKRMLPDGHTDFVFAVAAEEFGIILCLIILALFAFIILRSLSRASKESDPFSRFAITGLALLFGLQAAINMAVNVHIAPAKGMTLPFISYGGSSLISIAFGMGMLLALSRKRPGAAALAALTEKPAVEPVAQPVAPPAGAMPDPA
>NC_009720.1|WP_041575219.1|1367950_1368829_+|hypothetical-protein
MANGLFVTTKSTDRIRAHFERVRRQTEGLVDWCFVHNPGNHVAPVEPCLDPPPDQVLPERLRQLERNGGLVPGHVDVLTMAAAWPLPHDQTWIMEFDVDYTGAWRALFERFAASDADLLTTTLLPLADDPDWYFADTALAPAHVDPACRMRSFNPLMRMSRRFMEAYADEVRDPGWQGHFEYLLPTVARHRGLKIEDMGGQGPFCPPERRGTLYSNTPLHPQLVPGTFVYRPWRPDYFAERPEDFPPGDWLFHPIKPDAPPPPPPPPPPPRPPQRSLLRRLWRFVRGKGMGS
>NC_009720.1|WP_041575217.1|1364918_1367642_-|ligase-associated-DNA-damage-response-DEXH-box-helicase
MRPGAPSPDALPEVFQSWFRARGWTARAHQLDLVAAAQAGRSVLLIAPTGGGKTLAGFLPTLIELSGGRRKRGGVAAPNALPPLDTPPPPDTPPPPQASPASGRGSKAARGVGKGEMVNADATPLPFARWQAEQPASPLHTLYISPLKALAVDIARNLETPISEMGLPIRVETRTGDTPSSRRQRQRRDPPDILLTTPEQISLLLASKDAEHLFSGLKRVVLDELHALVTSKRGDLLALALARLRAIAPGLQCVGLSATVAEPDDLRRYLVAQDEGAATPVPGHAPLADLVVAQGGVAPDVRMLETDVPMPWASHMALHAVRDIYALLKANRLSLVFVNTRRQAEFIFQELWRINDDNLPIALHHGSLAVEQRRKVEAAMAAGRLKAVVATSSLDLGIDWGDVDLVINVGAPKGSSRLLQRIGRANHRLDEPSRAVLVPANRFEVLECRAALEAVAVGAQDTPPERLGALDVLAQHILGMACAAPFAADALFNEVRSAAPYRHLPREDFDAALQFVATGGYALKAYERYAKIRPTRDGLWRVANPMIAQAYRLNVGTIVESTMLKVRLVSARGAAKTGVTGRVRFGGRMLGEVEEYFVETMVPGDTFVFAGEILRYEVMVEDEVYVSRTTATEPKVPAYAGGKFPLSTFLAAGVRALLAAPERWAALPKQVREWLELQRLRSRLPGRDDLLVEGFVQGGRYYLVTYPFEGRLAHQTLGMLLTRRLERARLKPLGFVANDYALAVYAAGDMGAAIAGGRLALADLFDEDMLGDDLEAWLAESALMKRTFRYCAVIAGLIERRFPGKEKTSRQVTVSTDLIYDVLRRHEPDHLLLRAARADAATGLLDVKRLAQMLARIKGRIVHMPLERVSPLAVPVLLEIGQESVGGEASDALLAEAEEELIRAAMG
>NC_009720.1|WP_041576456.1|1363876_1364278_-|metallopeptidase-family-protein
MWRDLEAPGVAAFEDLARDAFARLPESFRALCEGLVIRIEDFPTDEVLDEMEAETPFDLLGLFQGIGRAQADAVAHTGQMPNMVFLYRRPILDYWAEHEETLGDVVTHVLVHEIGHHFGLSDDDMEAIEDRAN
>NC_009720.1|WP_012113206.1|1363240_1363822_-|cytochrome-b
MNQNKEAHVAVDPKLSRYGAPLRAIHWLTVLSIIVVFGITYLEGFFARGTPARELIWWTHISVGLLLIALVAVRIPVRIFGPTPPASAQISRPVAIASHIVHGLLYLLLIATPFVGIYLAFLRGNEVSFFSLFTIPSPIAPDRPMARQVQEVHEWLANGLVILAFLHAAAAVVHHVLLKDDVLKRMLPERVAP
>NC_009720.1|WP_012113205.1|1362503_1363109_-|3-isopropylmalate-dehydratase-small-subunit
MEKFTVLEGVAAPLKLVNVDTDMIIPKQYLKTIKRTGLGTGLFSEMRYKDDGSDNPDFVLNQSAYKNAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPVVVSKEDLDKLFDDADRGANATLTIDLPAQEIRGPDGGVVKFEIDPFRKRCLIEGLDDIGLTLEKAPAIAAYETAKGAEQPWL
>NC_009720.1|WP_086017064.1|1361124_1362054_-|hypothetical-protein
MPGSQRASRSVVVDLIAVLAAVTAGEPRVMTVTKGSALPSGPFELAHRSLQQGLRDWVEQQTHHPLGYVEQLYTFADKDRADADTAPRTISISYLGLTREHDAAETGWHSWYEYFPWEDHRAGPPPVIAKVLAPALAAWAEDAPTVGMRSERRLRAAATFALDGARWNEELTLQRYEMLYEAGIVAERLRREGKNEAGGAGRPMIADHRRILATGIARLRAKIKYRPVVFELMPPTFTLLQLQRCVEAIAGRTLHKQNFRRLMEQQELVEETGGTASESLGRPAKLFRFRHAVVEERALAGTKLPLAPT
>NC_009720.1|WP_012113203.1|1360022_1361066_-|quinolinate-synthase-NadA
MVALAQPALAETSLAGGPLAGNALSEAFARTTALYERVRRVVPPADWAFFAEDAEAILSLKRERNAVILAHNYQTPEIFHCVADIVGDSLALAREAMRVDADVIVLAGVYFMAETAKLLNPGKTVLIPDQGAGCSLADSITAQDVRLMRQAYPGLPVIAYVNTSAAVKAEVDVCCTSGNAARIVKSFGVPKVIMLPDQYLAKNVAAETGIEIISWAGQCEVHERFTAQDVRELRIANPGVTVLVHPECPPDVVAEADFAGSTAAMSDYVGQKRPPRVVLLTECSMSDNVAVNYPDIDFVRPCNLCPHMKKITLANIRKALEGNVHEVTIAADVADRARASVERMLAL
>NC_009720.1|WP_012113202.1|1358484_1360026_-|L-aspartate-oxidase
MTGFERLEGRPVIVGGGIAGLAAALFLSPEPVVLVTRAPLGADGSSPLAQGGMAASVGTDDDADLHLADTLMAGDGLCDPEVARRILADGPAAVAELERLGVAFDRAADGSLALGLEAAHSRRRIVHADGDATGRALVQALTIAARACPSITVVEAEARRILMEDGAVAGLLVSGRDGGAVLRTRRLILATGGVGALFEHTTNPASSFGMGLALAAEAGAELADLEFVQFHPTALATSARPLSLISEAVRGEGALIVDRAGRRVLEAVPGAELAPRDVVARAVWQELVAGREVFLDARASLGARFATRFPSVAAGCRAAGIDPATDLVPIRPAAHYHMGGIGVDADGRSSVPGLWAAGEVAATGLHGANRLASNSLLEAVVCGRAAALSVAGTPARAPARRMAVHLPAAPDATSVRPIVSRHLGVTRDAAGLATAIARLLPLAEGAGPACAPARVGLMMAVSALAREESRGAHARTDFPAPAAVARRSRTTLERTLAEARRHAAPAFALASSS
>NC_009720.1|WP_012113201.1|1357621_1358473_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MPLDPLPELMVEPIVRAALLEDLGRAGDITTDAVVPPGHESRLVLAARQPGVVAGLDCARLAFRLLDGAVRFTPRVTDGAAVEPGTVLAQVEGSSRALLTGERTGLNLACRLSGIATATAGLVAAIAGHKAQIVCTRKTTPGLRSLEKYAVRAGGGANHRFGLDDAVLIKDNHVAIAGSVREAMSRVRARAGHMVKVEVEVDTLAQLEELLTIGADAVLLDNMTPETLTEAVRMVGGRMLTEASGRVNRDTAPAIAAAGVDLISVGWLTHSAPILDIGLDWVG
>NC_009720.1|WP_081436996.1|1370231_1371452_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MAALAGQQAPSGRPDRPFEVRGRFQRPCEGDVTQIVLLAAGGTGGHLFPAEALAASLGRRGFDVDLATDARAARYAGHFPARELHVLPADTVRGRSPVALARTGFALASGLVSSLALLKRVKPVAVVGFGGYPTVPPLLAAALLGVPTLIHEANGVMGRANRMLARRVTAIATGFPGIVAADPALAPKAVWTGNPLRPSAIAAAATPYDPPLPGGELRLLVFGGSQGARVMSDVVPEAIERLDADLRSRLVLTQQAREEDLERVKATYARLGVRALVAPFFDDLPARMALAHLVVARSGAGTVAELAAIGRPSILVPLPHALDQDQAANARSLGDVGGALVLRQVEFDPDRLALELHSFASEPRSLTLMADKARSQGVLDAAERLGDLVRHLAAKGAVATFQGKLA
>NC_009720.1|WP_012113212.1|1371448_1372861_+|UDP-N-acetylmuramate--L-alanine-ligase
MKLPSGLGSIHFVGIGGIGMSGIAEVLHNLGYEVQGSDVADSANVKRLRDLGIKVMIGHSAVNVDDADVVVVSSAIKRDNPELVAARTKRLPVVRRAEMLAELMRLKSCVSIAGTHGKTTTTSMVAALLDAGNFDPTVINGGIINAYGTNARLGDGNWMVVEADESDGTFLKLPTEVAIVTNVDPEHLDHFKTFDKVQDAFKTFVENVPFYGFAVMCIDHPVVQALVGRIEDRRVITYGENPQADVRLVDVDLKGGITRFGVVFRNRAGETVHEISGLKLPMPGKHNALNATAAIAVAHELKVPDDKIIEAIANFGGVKRRFTRTGEWNGVTVFDDYGHHPVEIAAVLKAARAASEGQVIAVVQPHRYSRLASLFDEFCTCFNDADHVVVAPVYAAGETPIEGADRDHLVQGLIAHGHRSVTALEGPERLAQVVGGLAKPGDYVICLGAGSISGWAYALPGELAALKPAA
>NC_009720.1|WP_012113213.1|1372844_1373414_-|hypothetical-protein
MPDTSFKLNPTLEDDENHFGYLKKLEGPEQWAVKYLYDRLGIIDNKMSALLRLNGIIIGFLSLAVFRVAENSKIVTWPIIFLSMCVVVFVVLTYAEIMGARIFYLAFDRVTPSRTFDDYCKTAMNITITRERQYRQAFWASVGGIALFILMFMFVAVGDIYKLSTAGAEALPAACTPVTSCPPPPKPPA
>NC_009720.1|WP_012113214.1|1373518_1373962_-|cytidine-deaminase
MATTKLARKLPAPRSYDLEALFDAAKAVSKNAYAPYSRFRVGAALLSANGTVHVGCNVENIAYPIGTCAEAGAIAAARAAEGAGLEAVAIAIYAEKEGEGHVACTPCGACRQRILELSPATTVHFYGLGDKVVSVTAADLLPHAFTF
>NC_009720.1|WP_012113215.1|1374081_1375365_-|crotonyl-CoA-carboxylase/reductase
MAQTAAANANEGPVKDLYELGEVPPLGHVPAKMYAWAIRRERHGPPEESFQLEVVPTWELGENDVLVYVMAAGVNYNGIWAGLGQPISPFDVHKAPFHIAGSDASGIVWAVGSKVKRWKVGDEVVVHCNQDDGDDEECNGGDPMFSPSQRIWGYETPDGSFAQFCRVQARQLMPRPKHLTWEESACYTLTMATAYRMLFGHPPHTVKPGDYVLVWGASGGLGVFGVQLAAASGAHVIGVISDETKRDYVLGLGAKGVINRKDFKCWGQLPKVNSPEYNEWTKEARKFGKAIWDISGKRDVDIVFEHPGEQTFPVSTLVGKRGGMIVFCAGTTGFNITFDARYVWMRQKRIQGSHFAHLKQASAANQFIIDRRVDPCMSEVFPWDRIPEAHTKMWKNQHAPGNMAVLVNTPRTGLRTLEDVIEAGAKK
>NC_009720.1|WP_012113216.1|1375632_1375869_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGILWMVIVGAIAGFLAGQIFQGYGFGLIGNIAVGIVGALIGGFLFGGVFVVGGMIGQIISATIGAIILLFIISLVKR
>NC_009720.1|WP_012113217.1|1376065_1378039_+|protein-meaA
MVARDKPWLFRTYAGHSTATESNKLYRSNLAKGQTGLSVAFDLPTQTGYDSDHPLARGEVGKVGVPISHLGDMRTLFDGIPLAEMNTSMTINACAAWLLSLYIATADEQGADRTKLQGTTQNDIIKEYLSRGTYVFPPAPSMRLTKDTIIFTTEYLPRWNPMNVCSYHLQEAGATPVQELAFALANAIAILDTVKRSGEAEGKVFGEVVGRISFFVNAGMRFITEMCKMRAFVDLWDEICVNRYGITDAKQKLFRYGVQVNSLGLTEQQPENNVYRILLEMLAVTLSKGARARAVQLPAWNEALGLPRSFDQQWSLRMQQVLAYETDLLEYGDIFDGSIEIARKVEQLKEEARAELAQIDAMGGAVAAIENSYMKQQLVESNTRRLEAIERGEQVVVGVNRWTETEPSPLTTGEGAILTVPEGVEAEQIARLQAWREARDSKAVAAALAALKSAAQEGRNIMEPSIVCAKAGITTGEWGTCLREVFGEYRAPTGVGRAARVDTQGLDEVRKGVDAVSEKIGRRIKFLVGKPGLDGHSNGAEQIAVRARDCGMEVVYEGIRLTPAEIVNAALEESVHVIGLSILSGSHVPLVRDVMDRLRAEGLSDIPVVVGGIIPPEDEVQLKGFGVTAVYTPKNFELNRIMADIVAIVDRQAQKAA
>NC_009720.1|WP_012113218.1|1378136_1378829_+|hypothetical-protein
MALEGADAGGRGRSLVASALVVALAAVSVLVARAEGAPVDVAVSEAPPPAAMPAAEAPPNPPAPAVSASASTAAAPTPGPAADPYAGLPKVVARAVQELEAECRAAEGRPNWKPGTLAEVVNVSPDGRPDYLIDTHAIACDGGFTPWIGSDGFRHILFVSTGPGRWVRAFDRGARGFEIENKGRKVPQVIVFSHSAYCTRPNPERYMRCTQVYEWRRGKLRKISEDWFTD
>NC_009720.1|WP_012113219.1|1378982_1379846_+|VOC-family-protein
MTAALSLPTETAPHDLALGAVALTSRDPERLIPFYRDGVGLEVLSTGETTVLGAGGRPLVEIARRPDAARAGVRAPGLFHMAIRVPDRSSLAARLMALHHMGLRMGASDHLVSEALYVDDPDGNGIEIYRDRPADEWPRSPDGTIAMATLPLDLNALSREAPPAAQPAPAGTDMGHVHLKVSDLEAARRFWVDTVGLTIMARYPGALFVSADGYHHHLGLNTWQSSGAPAPATGTAGLDHFTVRLPQASIDALGQRLAAAGVAFTALEGGGLTARDPSGNTAVFRPA
>NC_009720.1|WP_012113220.1|1380018_1380954_+|DMT-family-transporter
MSLRPPRASGFALYDAPYLLLTVTALLWAINIVIGRVVAGHVPPVTLAFVRWTGATLILLPFALGQVRRDLPLIRRHFWLLVLLAATGIACYNAMSYYGLQYTQALNGLLVQSTAPLLVALWTFFIFRERLSLGQMAGIVTSLVGVLVIISHGSLDTFLHLKPNIGDVWIICALVIYAFYAAILRKRPGLGPLSFLVSIMALGSVLLAPFALWEAAQGRILHFDHMTLGVLAYVMIGPSIVAYLFFNRGVELVGANAAAPFLHLMPVFGTALAIIFLGETIAWYHIAGYALVITGIALATLAARAKRRPPA

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Crispr_ID: NC_009720_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009720_3

4731614-4731743

Orphan

Consensus_repeat	Method
CCCGAGCAAACCGGCTGTTGCCAGTTTGCGTTACGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009720_3

>merge|NC_009720|3|4731614-4731743|CRISPRCasFinder
CCCGAGCAAACCGGCTGTTGCCAGTTTGCGTTACGCAAAGACTCGCCGGGCGGCGTCAGAGGCTCTTTTTACCTCAGAAGTCCATGCCGCCGCCCGAGCAAACCGGCTGTTGCCGGTTTGCGTTACGCAA

>NC_009720|3|3|4731614-4731743|CRISPRCasFinder
CCCGAGCAAACCGGCTGTTGCCAGTTTGCGTTACGCAA	AGACTCGCCGGGCGGCGTCAGAGGCTCTTTTTACCTCAGAAGTCCATGCCGCCG
CCCGAGCAAACCGGCTGTTGCCGGTTTGCGTTACGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009720.1\|WP_012116241.1\|4738914_4740087_+\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NC_009720.1\|WP_041576057.1\|4724896_4725616_-\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|226106
NC_009720.1\|WP_081437188.1\|4727318_4730750_+\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NC_009720.1\|WP_041577623.1\|4735889_4736462_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NC_009720.1\|WP_012116239.1\|4736504_4737593_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_009720.1\|WP_157048168.1\|4720847_4721954_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227121
NC_009720.1\|WP_157048283.1\|4723416_4723851_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_009720.1\|WP_012116224.1\|4722247_4723084_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381364
NC_009720.1\|WP_081437106.1\|4731010_4731349_-\|hypothetical-protein	unknown	unknown	unknown
NC_009720.1\|WP_012116237.1\|4735370_4735742_+\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226771
NC_009720.1\|WP_012116230.1\|4726908_4727205_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|225489
NC_009720.1\|WP_012116234.1\|4733478_4733793_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_009720.1\|WP_041577617.1\|4725620_4725812_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NC_009720.1\|WP_012116240.1\|4737589_4738744_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_009720.1\|WP_012116233.1\|4731778_4733410_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_009720.1\|WP_041576059.1\|4740405_4741365_+\|tonB-system-energizer-ExbB	unknown	unknown	gnl\|CDD\|131844
NC_009720.1\|WP_041577619.1\|4734180_4734468_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368804
NC_009720.1\|WP_012116236.1\|4734585_4735167_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153243
NC_009720.1\|WP_012116226.1\|4723896_4724823_-\|cation-transporter	unknown	unknown	gnl\|CDD\|376563
NC_009720.1\|WP_012116229.1\|4725911_4726709_-\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697

Protein	Function_ID	Function_description	E-value
NC_009720.1\|WP_012116241.1\|4738914_4740087_+\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NC_009720.1\|WP_041576057.1\|4724896_4725616_-\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	8.87841e-46
NC_009720.1\|WP_081437188.1\|4727318_4730750_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_009720.1\|WP_041577623.1\|4735889_4736462_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	2.32844e-55
NC_009720.1\|WP_012116239.1\|4736504_4737593_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_009720.1\|WP_157048168.1\|4720847_4721954_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|227121	COG4782, COG4782, Uncharacterized protein conserved in bacteria [Function unknown].	1.78859e-111
NC_009720.1\|WP_157048283.1\|4723416_4723851_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.59971e-14
NC_009720.1\|WP_012116224.1\|4722247_4723084_+\|aldo/keto-reductase	gnl\|CDD\|381364	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins. Escherichia coli YeaE is the prototype of this family. It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	9.98655e-159
NC_009720.1\|WP_012116237.1\|4735370_4735742_+\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|226771	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only].	1.58422e-30
NC_009720.1\|WP_012116230.1\|4726908_4727205_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	8.91364e-30
NC_009720.1\|WP_012116226.1\|4723896_4724823_-\|cation-transporter	gnl\|CDD\|376563	pfam01545, Cation_efflux, Cation efflux family. Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.	8.37183e-25
NC_009720.1\|WP_041577617.1\|4725620_4725812_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	3.74191e-14
NC_009720.1\|WP_012116240.1\|4737589_4738744_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_009720.1\|WP_012116233.1\|4731778_4733410_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_009720.1\|WP_041576059.1\|4740405_4741365_+\|tonB-system-energizer-ExbB	gnl\|CDD\|131844	TIGR02797, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane. [Transport and binding proteins, Cations and iron carrying compounds].	2.69271e-92
NC_009720.1\|WP_041577619.1\|4734180_4734468_+\|hypothetical-protein	gnl\|CDD\|368804	pfam06233, Usg, Usg-like family. Family of bacterial proteins, referred to as Usg. Usg is found in the same operon as trpF, trpB, and trpA and is expressed in a coupled transcription-translation system.	2.58933e-55
NC_009720.1\|WP_012116236.1\|4734585_4735167_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153243	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	8.78055e-110
NC_009720.1\|WP_012116234.1\|4733478_4733793_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.8184e-57
NC_009720.1\|WP_012116229.1\|4725911_4726709_-\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	3.81807e-50

>NC_009720.1|WP_081437106.1|4731010_4731349_-|hypothetical-protein
MKTTIVAAALVLALGATAVSAQGVVKGAEQGANKGAEVGDKAAGPVGTAVGGTVGGVGGAVTGGVAGGVKGTGEGAKEGARAGEKAAGPVGAVVGGTVGAVGGAVGGVLGVK
>NC_009720.1|WP_081437188.1|4727318_4730750_+|transcription-repair-coupling-factor
MEGMVVADLARSLAGRKNAPWPSLTVICRDGQRMAAVERGLAFFAPELEVLSFPSWDCLPYDRASPNASIVARRMATLAKLARIKGGNASVLLTTVNATVQRVPAKGLVAAQSLVAAPGNTIDLEGVTQWAEQNGFLRTSTVRDTGEYAVRGGLIDLFPPGLDAPIRLDFFGDTLETIRAFDPETQRTTGQVRSLDLVPMAEFQLTTETMRRFRMAYVAEFGAARKGDTLYEAVSEGRRHAGMEHWLPLFHERMDTLFDYLEGGTLLLDPLAEEAGGERIAQIADYYDARKGGQELGGGTIYNPLPADRLYLSGPEWNKRLARHSLARLSPFAAPEGGDNRVIDLGGVQGRSFAAERAEPEANVFDAAIAHVRELQKSRKVILAGWSEGSRERLGTVLADHGLKGLAAISRFDSLAALPKTQAALAVFGLEAGFETPDFAVIGEQDILGDRLVRPKRKARRPQDVLTELTALTAGDLVVHVDHGIGRFIGLKTVEAMGAPHDCLEIHYAGGDKLFLPVENLELLSRYGSEDTEAQLDKLGGGAWQARKARMKKRIREMASELIKIAAQRQLGEAPKLVPAMGLYDEFRARFPYEETDDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQVAVVVPTTLLARQHFKTFSERFKGLPVNVAQASRMVTGKDLTAVKKGIADGTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFITPFDPLVVREALLRERYRGGQSFYVVPRIEDLAEVREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNANTLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPMTVQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLQEAIAHLKAGITDYVDDKWSPNITIGMPVLIPEDYVADLHVRLALYRRLADIQDDGEIDAFGAELVDRFGPTPEEVGQLLKLTQIKALARKANVEKVDAGPKGVVLGFRDNEFADPSGLVKLIGQEGNQAKVRPDFKVVFLRDWPTAEARLKGTLVVLKKLAALASKKAL
>NC_009720.1|WP_012116230.1|4726908_4727205_+|succinate-dehydrogenase-assembly-factor-2
MSGLTRSSDGLDERRRRILFRAWHRGMREMDLILGGFANVEIETLSDAELDAFEALLEPDDQKVFSWISASEPTPAEFDTPLFRKIRDFHLSGRGLPA
>NC_009720.1|WP_012116229.1|4725911_4726709_-|adenosylcobinamide-GDP-ribazoletransferase
MQLDRIAQDLVAALRFYSRLPLPAGRDDPDAFAVPSLNRIAYAIPLAGAVIGLIGAVVLVGALALKLPAFLASVLAVTALVLTTGAFHEDGLADTADGLGGGRDKAQRLAIMRDSRIGTYGGCALILALLLRVAALEALVASAGMFRAALALVVAEAASRAAGVLLLLALPPARADGAGASFGRPSESAGLACALVAALLVVVILVPGFGISTAFAGLIAPLVALFAMMRLSGRLIGGQTGDVAGATQQVAVIVFLLGVLIFPGR
>NC_009720.1|WP_041577617.1|4725620_4725812_-|DUF1289-domain-containing-protein
MATPCVKLCSIEPLSGLCLGCGRSMREIGGWMSYSPDTRAAIMATLPQRLARLRAEARDCVPD
>NC_009720.1|WP_041576057.1|4724896_4725616_-|TIGR02281-family-clan-AA-aspartic-protease
MRSDRLLWILLLGLLGGVVVLAVHHEQGQVAGIDLNQFSALVSQLAIAVFIGAGLWSVVRGRIGESLMAAAFWLVLAALLALGYTYREPLKQVGQRVLAEVAPGYAVNVAQSGSNAVEVTRASGGDFGVRAAINGTSVNMLVDTGASSVVLTHEAAKAAGLPVDFLKYDVPVDTAGGRIKAAGVVLDNIIIGGIVERHVPALVSPPGMLRTSLLGMSFLSRLQAFEFRGDRLLMRGGDR
>NC_009720.1|WP_012116226.1|4723896_4724823_-|cation-transporter
MRIPSVTDRQKEHAVLLAVLLDLGLFLPYAVTTAYTGSLAMLAEILRGGLLLLVEGTAYMALRAVHRGQVHFYDFGVGKLERMFSIVIGALLVMAAVFVVAKVLQSTEPQPLAPFWAAAAMVLVLANLAANLIPLIPLWRATRAGTSIIVLSQFRARMAKAAASVTVVTCVLIDVLMPDTRLAEMADDFGGLVGAAFMLVVGGRMISESLPDLLDRALAEPVQMKVNSALAAFFDQYEQLTAVRTRQSGAVAHVEITLGFAPSRTIADVSTVTTGLRSALEAAIPEADVVVIAEASSLPRRDDFSPAC
>NC_009720.1|WP_157048283.1|4723416_4723851_+|carboxymuconolactone-decarboxylase-family-protein
MTRSVSAEETYRDIEQTLGLVPSFFKAFPDAGIAGAWAEFKAVQLNPQTQLSGKEKELIGLAVAAQVPCHYCVYFHTAAARLHGASEAEIREAVAMAAITRHWSTVLNGMLVDEAQFMKETDTAMAMAAAKMKGGTAPTSAKGQ
>NC_009720.1|WP_012116224.1|4722247_4723084_+|aldo/keto-reductase
MPKIVTLPNGETVPALGQGTWYMGESASARAGEVAALRAGLDLGLTLIDTAEMYADGGAEEVVGEAISGRRNEVFLVSKVYPHNASRAGVQAACERSLKRLKTDVIDLYLLHWRGSHPLKETIAGFEALQAAGKIRLWGVSNLDTDDMEELLAAPGGRACAANQVLYNPSRRGPEFDLLPFLAETGIPAMAYSPIEQARLPRGGALGAVAKKHGVDPFQVALAWVMRAGDVIAIPKASRIAHVQMNAAARDLVLDADDLAAIDRAFPAPRRKVGLEML
>NC_009720.1|WP_157048168.1|4720847_4721954_-|alpha/beta-fold-hydrolase
MILALAGCARPEGLLVPVAIDTPPAGKVDMLVATTRAPSDAEGVLFTGERGDGLAFTNIVVSIPPNREVGSIQWPSRVPADPAREFAVTRVDPIPNNKVASWYRQQPRAKHRVLIFVHGFNTRFDASVFRFAQFIHDTSADYMPVLFTWPSRGRITDYLYDRESANFSRSDLAYVLSSAVKSPQVDEVVVLAHSMGAWLAMESLRQLALREGRVPAKITNVVLASPDLDIDVFERQVQELGPKRPHLTLFVSRNDQALGVSRLLSGQVTRVGAVDLTNPAYSARLEQATGIVVLDLTALQGGDALNHSKFATQPDMVRLLGDRLMAGQSISDDVTPGSTAVQAVGGAVGTVVAAPFQLPIQVFAAGRN
>NC_009720.1|WP_012116233.1|4731778_4733410_-|chaperonin-GroEL
MAAKDVKFSVDARDKVLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVSVAKEIELEDKFENLGAQLVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVDAIVKDLASNSRKVTSNDEIAQVGTISANGDAEVGKFLAEAMKKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFVTNADKMRVEFEEPYILINEKKLSGLQELLPVLEAVVQSARPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGTVISDDLGIKLDSVNLSMLGRAKKVVIEKENTTIVDGSGEKAEIEARIAQIRAQIETTTSDYDREKAQERLAKLAGGVAVVRVGGSTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRSIKALEGLKVDNADQKTGIEIVRRAIQAPARQIVLNAGDDGSVVVGKILESSDYSFGYNAQTGEYVDMVKAGIIDPTKVVRTALQDAASVSGLLITTEALIAELPKKNAPAAPAMPGGGMDF
>NC_009720.1|WP_012116234.1|4733478_4733793_-|co-chaperone-GroES
MGFRPLHDRVVVKRIEAEQKTAGGIIIPDSAKEKPQQGEVVSVGPGARNEKGELVALDVKAGDLVLFGKWSGTEVKIDGQDLLIMKESDILGVLETSANAQKAA
>NC_009720.1|WP_041577619.1|4734180_4734468_+|hypothetical-protein
MVSHPSKVSRDFVLQMEGYGLATAEILYRMPDHPALLQTYLWQEYDLCPRFPELNRFLEFWQREIEGRLHSVRVAHSGLIKPAELRTVDGMFLLN
>NC_009720.1|WP_012116236.1|4734585_4735167_+|DJ-1/PfpI-family-protein
MAGKRILMIVGDFGEDYEIMVPYQALLAVGHTVHGVCPGKKAGDKIATAIHDFEGHQTYTEKPGHLFALNATFAEVDVASYDALLVPGGRAPEYLRLYPEVIAAVRHFFDAGKPVAAICHGAQMLAAAGVLKGRTCSAYPACRPEVELGGGTYADIPVDTAVTEGNLVSAPAWPAHPAFIAQFLTLLGTSISL
>NC_009720.1|WP_012116237.1|4735370_4735742_+|ribbon-helix-helix-domain-containing-protein
MCRLFSEADAALWVQETRALRLNGFSTSVRLEAFFWNVIEDIAARDGLSVNRLLARLYDEKAEAGRDIDNFTSFLRVCCGRYLALRAQGLVPEAGALAALDVNRILHAERDTPLLARRPSPAA
>NC_009720.1|WP_041577623.1|4735889_4736462_+|exopolysaccharide-biosynthesis-protein
MLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVICGTILGLIGLQMAMGRQELWLPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQFAGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFGLGLVERDGLVILAGFGATVLGLLITAAMSWAIYQGAVAIF
>NC_009720.1|WP_012116239.1|4736504_4737593_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVDAFDFDLPEEHIALRPAEPRDAARMLVVRPGGAPELSDLKVRDLPDFITANDALVVNDTRVIPAALEGVRERDGGSAVRIEANLIKRLDASRWQAFAKPGKRLRVGDRVRFGGEGSACLLGALDAQIAAKEDDGSVILAFDLAGTALDEAVTAVGHMPIPPYIAARRAEDDRDRADYQTLFARVSGSVAAPTASLHFTPELMARIAATGASMHTVTLHVGAGTFLPVKAEDTTGHRMHAEWGEVSADTAAALNAVKAKGGRIFTVGSTSTRLIESATGEDGTIRPFVGETDIFITPGYRFRAVDGMLTNFHLPRSTLVMLVAAFVGHEAQKRAYAHAIAAGYRFYSYGDACLLLPEGGP
>NC_009720.1|WP_012116240.1|4737589_4738744_+|tRNA-guanosine(34)-transglycosylase-Tgt
MTAHTPVDTFSFTLSATDGAARTGFVSTPRGAIRTPAFMPVGTAATVKGLYFDQVKQTGADIVLANTYHLMLRPGAERIAKLGGLHSFMRWDGPILTDSGGFQVMSLSSLRKMSEQGVTFRSHVDGAYFEMSPERSVEIQGLLGADIQMQLDECVRLPCTDEEAARAMRLSLRWAERSKRAFEAQPKGRALFGIVQGGAVPALRVESARALADMDFPGYSIGGLAVGEPQEVMLAMIETVEPHLPVNKPRYLMGVGTPDDLLESVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHADDPRPLDEESDCPALRDYSRAYLHHLVRCEEMLGSMLLTWANVHYYEQLMAGARAAIAEGRYADYMAQVKDGWARGDIPVWAG
>NC_009720.1|WP_012116241.1|4738914_4740087_+|isovaleryl-CoA-dehydrogenase
MLPNSQAGFDFDLGETADMLRDTVRSFSDAEIAPRAAEIDRTNQFPRDLWPKLGALGLLGVTAEEEYGGSGLGYLEHVIAMEEISRASASVGLSYGAHSNLCINQISRNGTAEQKAKYLPKLISGEHVGALAMSEPGAGSDVVSMRTRADKKGDRYILNGSKMWITNGPIAETLVVYAKTDPAAGPKGMTAFLVERDFPGFSTAQKLDKLGMRGSDTGELVFQDCEVPEENVLGAVGRGVNVLMSGLDYERAVLAGGPTGIMQACMDIVLPYVHERKQFGQPIGTFQLMQGKIADMYVTMNATKAYVYAVAKACDRGATTREDAAGAILYAAEKATWMALEAIQTLGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMLIGRQLFDKTA
>NC_009720.1|WP_041576059.1|4740405_4741365_+|tonB-system-energizer-ExbB
MPFWRALFQVPAGAALLFLALVLLPGLSLAQPAAPAEQPAAAAPAPSAPTASPAAATPSEAPAPVAAPDHAAEHAPAQESPSIDARLPHDLSPWGMFMAADLVVKAVMVGLAFASLVTWTVWFAKSLELVFARRAVARTLDALQAAPTLFDAAAAMPKDRGAAPATVKAALAEWKVSEGLPVEGIKERVAVALSRIEARAGRRLSGGTGVLATIGATAPFVGLFGTVWGIMNAFIGISRAQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNLFARAIAAQKARLADTSAEVMRHLSRDLDRAASGMEPRRLHAAAE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009720_2	2.1\|1370148\|35\|NC_009720\|CRISPRCasFinder	1370148-1370182	35	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	135548-135582	8	0.771

1. spacer 2.1|1370148|35|NC_009720|CRISPRCasFinder matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 8, identity: 0.771

acccgacaagcccgcgcggcgcctgagcgaggggg	CRISPR spacer
tcgctgcaaccccgcgcggcccctgagcgaggccg	Protospacer
 * * .*** ********** ***********  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3487004 : 3508095

Caulobacter_phage(14.29%)

protease,tail,capsid,tRNA,head,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012115117.1\|3487004_3488876_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_012115118.1\|3488947_3489433_+	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_012115119.1\|3489597_3491661_-	hypothetical protein	NA	NA	NA	NA
WP_012115120.1\|3491811_3494094_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_041575687.1\|3495283_3496210_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_012115123.1\|3496400_3496964_+	hypothetical protein	NA	NA	NA	NA
WP_012115124.1\|3496986_3498237_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.4e-73	43.4
WP_012115125.1\|3498527_3498806_-	hypothetical protein	NA	NA	NA	NA
WP_012115126.1\|3499223_3499721_+	HPP family protein	NA	NA	NA	NA
WP_012115127.1\|3499794_3500976_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	8.7e-70	39.5
WP_012115128.1\|3501058_3501349_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_041575689.1\|3501600_3501789_+	hypothetical protein	NA	NA	NA	NA
WP_012115130.1\|3501813_3502011_+	hypothetical protein	NA	NA	NA	NA
WP_012115131.1\|3502014_3502494_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.0e-25	43.4
WP_012115132.1\|3502521_3503808_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.5e-54	36.1
WP_012115133.1\|3504094_3505060_-	lytic transglycosylase domain-containing protein	A0A0A0P1R1	Enterobacteria_phage	1.4e-12	38.5
WP_086017105.1\|3505062_3505809_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_012115135.1\|3506075_3506639_+	hypothetical protein	A0A0F7L420	uncultured_marine_virus	1.8e-09	30.3
WP_012115136.1\|3506635_3506956_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_041575692.1\|3506952_3507240_+	hypothetical protein	NA	NA	NA	NA
WP_012115137.1\|3507236_3507656_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012115138.1\|3507687_3508095_+\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	4.5e-18	40.1

DBSCAN-SWA_2

3511252 : 3520921

Paracoccus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012115145.1\|3511252_3511894_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.0e-48	50.2
WP_012115146.1\|3511900_3512791_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	5.6e-53	39.9
WP_012115147.1\|3512787_3513228_+	peptidase	F4YXU4	Roseobacter_phage	8.1e-29	45.8
WP_012115148.1\|3513259_3517162_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	4.3e-222	40.1
WP_012115149.1\|3517524_3518226_+	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	8.9e-38	41.1
WP_012115150.1\|3518259_3518580_+	hypothetical protein	NA	NA	NA	NA
WP_157048115.1\|3518601_3518760_+	hypothetical protein	NA	NA	NA	NA
WP_012115151.1\|3518759_3520010_+	hypothetical protein	NA	NA	NA	NA
WP_012115152.1\|3520048_3520921_+	glycoside hydrolase family 108 protein	J7FAQ2	Agrobacterium_phage	5.9e-39	50.3

DBSCAN-SWA_3

4024069 : 4030078

Caulobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012115572.1\|4024069_4024495_-	hypothetical protein	A0A2L0V129	Agrobacterium_phage	3.0e-36	56.7
WP_012115573.1\|4024491_4024845_-	DUF4326 domain-containing protein	A0A1D8EX70	Mycobacterium_phage	7.0e-15	41.0
WP_049776171.1\|4024837_4025077_-	hypothetical protein	A0A1V0EBK9	Caulobacter_phage	3.6e-15	64.1
WP_012115575.1\|4025127_4025619_-	hypothetical protein	NA	NA	NA	NA
WP_081437080.1\|4025618_4026557_-	hypothetical protein	U5PWU8	Bacillus_phage	1.6e-29	35.6
WP_012115577.1\|4026514_4026958_-	hypothetical protein	NA	NA	NA	NA
WP_012115578.1\|4026961_4028071_-	hypothetical protein	A0A2H4J6I3	uncultured_Caudovirales_phage	2.0e-28	41.5
WP_012115579.1\|4028081_4029110_-	hypothetical protein	NA	NA	NA	NA
WP_012115580.1\|4029102_4029288_-	hypothetical protein	NA	NA	NA	NA
WP_012115581.1\|4029289_4029517_-	hypothetical protein	NA	NA	NA	NA
WP_012115582.1\|4029685_4030078_-	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	1.7e-09	46.5

DBSCAN-SWA_4

4045455 : 4071977

Burkholderia_phage(34.78%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012115601.1\|4045455_4045758_+	hypothetical protein	A0A088FAU1	Sulfitobacter_phage	1.7e-09	51.4
WP_157048139.1\|4046113_4047781_+	hypothetical protein	A0A0U4IJ26	Arthrobacter_phage	1.7e-31	38.2
WP_012115603.1\|4047777_4049232_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	8.6e-136	51.4
WP_012115604.1\|4049228_4050005_+\|head	head morphogenesis protein	A9YWZ8	Burkholderia_phage	4.4e-62	53.6
WP_157048140.1\|4049985_4050198_-	hypothetical protein	NA	NA	NA	NA
WP_012115605.1\|4050222_4051560_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	7.9e-59	42.0
WP_012115606.1\|4051588_4052083_+	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	7.7e-12	35.0
WP_012115607.1\|4052235_4053297_+	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	3.8e-72	46.8
WP_012115608.1\|4053361_4053778_+	hypothetical protein	NA	NA	NA	NA
WP_012115609.1\|4053777_4054167_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	2.9e-30	51.6
WP_012115610.1\|4054166_4054688_+	hypothetical protein	A9YX26	Burkholderia_phage	2.8e-28	48.1
WP_012115611.1\|4054687_4055059_+	hypothetical protein	A0A0P0HSK8	Acinetobacter_phage	1.2e-17	46.2
WP_012115612.1\|4055055_4055637_+	hypothetical protein	A9YX29	Burkholderia_phage	9.0e-44	50.6
WP_012115613.1\|4055636_4057112_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.6e-121	49.3
WP_041575855.1\|4057138_4057573_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-36	54.2
WP_012115615.1\|4057578_4058058_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	2.3e-13	36.6
WP_012115616.1\|4058235_4060029_+	hypothetical protein	A0A2H4J9N7	uncultured_Caudovirales_phage	6.9e-26	29.3
WP_012115617.1\|4060028_4061957_+	hypothetical protein	NA	NA	NA	NA
WP_012115618.1\|4061956_4062496_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.0e-18	36.0
WP_081437082.1\|4062938_4063394_-	hypothetical protein	NA	NA	NA	NA
WP_157048141.1\|4063750_4063936_+	hypothetical protein	NA	NA	NA	NA
WP_012115619.1\|4063935_4064586_+	hypothetical protein	NA	NA	NA	NA
WP_012115620.1\|4064767_4065553_+	KilA-N domain-containing protein	A0A141GEX9	Brucella_phage	3.8e-77	60.8
WP_086017074.1\|4065795_4066128_+	hypothetical protein	NA	NA	NA	NA
WP_012115622.1\|4066124_4067105_+	hypothetical protein	A9YX04	Burkholderia_phage	1.2e-48	41.1
WP_012115623.1\|4067107_4067770_+	hypothetical protein	A9YX06	Burkholderia_phage	4.3e-26	41.5
WP_012115625.1\|4068236_4069406_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	2.8e-100	50.3
WP_012115626.1\|4069405_4070110_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.2e-53	48.6
WP_012115627.1\|4070187_4071465_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	1.9e-14	54.1
WP_041575862.1\|4071467_4071977_+	hypothetical protein	A0A240F4S3	Ochrobactrum_phage	9.7e-34	58.0

DBSCAN-SWA_5

4109348 : 4126579

Rhodobacter_phage(30.0%)

portal,protease,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012115678.1\|4109348_4110782_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.2e-73	39.6
WP_012115680.1\|4112715_4113195_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	8.2e-27	43.9
WP_041575911.1\|4113185_4113398_-	hypothetical protein	NA	NA	NA	NA
WP_012115681.1\|4113427_4114543_+\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	2.1e-41	45.7
WP_012115682.1\|4114572_4115925_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	6.6e-146	62.1
WP_012115683.1\|4115994_4116429_+	hypothetical protein	NA	NA	NA	NA
WP_012115684.1\|4116484_4116994_+	hypothetical protein	NA	NA	NA	NA
WP_012115685.1\|4116998_4117544_+	hypothetical protein	R9TG38	Synechococcus_phage	8.2e-15	37.7
WP_012115686.1\|4117540_4117897_+	hypothetical protein	M4QPU9	Salicola_phage	2.3e-13	40.2
WP_012115687.1\|4117898_4118324_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_012115688.1\|4118380_4118722_+	hypothetical protein	NA	NA	NA	NA
WP_157048145.1\|4118805_4118955_+	hypothetical protein	NA	NA	NA	NA
WP_012115689.1\|4118965_4119457_+	hypothetical protein	A0A2R4ALB1	Vibrio_phage	4.8e-06	31.9
WP_081437085.1\|4119533_4122929_+	hypothetical protein	M4SPQ3	Rhodobacter_phage	1.5e-13	25.0
WP_012115691.1\|4122925_4123354_+	hypothetical protein	NA	NA	NA	NA
WP_012115692.1\|4123350_4123851_+	DUF1833 domain-containing protein	NA	NA	NA	NA
WP_012115693.1\|4123850_4124270_+	NLP/P60 protein	M4SRS7	Rhodobacter_phage	1.2e-21	43.0
WP_012115694.1\|4124254_4126579_+	hypothetical protein	G8GWG0	Rhodobacter_phage	1.1e-143	38.1

DBSCAN-SWA_6

4883532 : 4895279

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041576102.1\|4883532_4884300_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-35	36.9
WP_012116374.1\|4884515_4885922_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.4e-98	52.8
WP_012116375.1\|4886131_4886941_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.0e-40	43.9
WP_012116376.1\|4886937_4887447_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_012116377.1\|4887507_4887744_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.2e-08	62.0
WP_012116378.1\|4887814_4888936_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-23	37.2
WP_012116379.1\|4889033_4889762_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.0e-36	45.1
WP_012116380.1\|4889758_4890607_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.3e-26	30.6
WP_012116381.1\|4890609_4891623_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.9e-21	42.7
WP_041577676.1\|4891774_4893067_-	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	1.2e-19	46.7
WP_157048289.1\|4893234_4894482_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012116384.1\|4894619_4895279_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.0e-27	46.7

DBSCAN-SWA_7

4953350 : 5006304

Rhodobacter_phage(19.23%)

tail,transposase,tRNA,terminase,head,integrase,plate

attL 4996622:4996639|attR 5007669:5007686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012116433.1\|4953350_4954673_-\|tRNA	proline--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.3e-08	26.3
WP_012116434.1\|4955341_4955779_-	glyoxalase	NA	NA	NA	NA
WP_012116435.1\|4955910_4956285_-	SUF system Fe-S cluster assembly protein	NA	NA	NA	NA
WP_012116436.1\|4956281_4957541_-	cysteine desulfurase	Q2XUY6	environmental_halophage	5.6e-91	40.7
WP_012116437.1\|4957622_4958963_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_012116438.1\|4958971_4959721_-	Fe-S cluster assembly ATPase SufC	W8CYL7	Bacillus_phage	5.1e-07	27.3
WP_012116439.1\|4959936_4961409_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_012116440.1\|4961547_4962822_-	cysteine desulfurase	NA	NA	NA	NA
WP_012116441.1\|4963132_4963804_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_157048291.1\|4963879_4965472_-	amino acid permease	NA	NA	NA	NA
WP_012116443.1\|4965881_4967003_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_012116444.1\|4967148_4968399_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.4e-57	35.9
WP_012116445.1\|4968807_4970157_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_049776056.1\|4970169_4970631_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012116447.1\|4970752_4971082_-	hypothetical protein	W8VYP4	Pseudomonas_phage	9.3e-30	70.4
WP_012116448.1\|4971127_4972387_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_157048174.1\|4972390_4972963_-	DUF4376 domain-containing protein	D5LGY9	Escherichia_phage	1.4e-12	55.7
WP_086017117.1\|4972973_4973573_-\|tail	phage tail protein	D5LGZ0	Escherichia_phage	4.3e-25	43.1
WP_012116452.1\|4974455_4975061_-	YmfQ family protein	NA	NA	NA	NA
WP_012116453.1\|4975057_4976158_-\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	2.0e-39	33.2
WP_012116454.1\|4976159_4976612_-	GP46 family protein	NA	NA	NA	NA
WP_012116455.1\|4976663_4977221_-	Mu-like prophage protein gp45-like protein	NA	NA	NA	NA
WP_041576112.1\|4977228_4978422_-	hypothetical protein	B5TAA6	Burkholderia_phage	1.2e-21	27.2
WP_012116457.1\|4978430_4979717_-	DNA circulation protein	U5P4I0	Shigella_phage	5.7e-14	34.4
WP_157048175.1\|4979713_4979890_-	hypothetical protein	NA	NA	NA	NA
WP_012116458.1\|4979897_4981898_-\|tail	phage tail tape measure protein	R9TP54	Rhizobium_phage	9.1e-11	26.7
WP_012116459.1\|4982028_4982505_-	hypothetical protein	NA	NA	NA	NA
WP_012116460.1\|4982501_4982864_-	hypothetical protein	NA	NA	NA	NA
WP_049776190.1\|4982890_4984354_-	hypothetical protein	A0A2P9JZJ8	Alteromonadaceae_phage	9.2e-53	31.5
WP_012116462.1\|4984362_4984641_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_012116463.1\|4984637_4985228_-	hypothetical protein	NA	NA	NA	NA
WP_012116464.1\|4985214_4985460_-	hypothetical protein	NA	NA	NA	NA
WP_041577720.1\|4985459_4985870_-	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_012116466.1\|4985890_4986172_-	hypothetical protein	NA	NA	NA	NA
WP_012116467.1\|4986183_4986813_-	hypothetical protein	NA	NA	NA	NA
WP_012116468.1\|4986824_4987721_-\|head	head protein	M4SRT6	Rhodobacter_phage	1.7e-110	64.0
WP_012116469.1\|4987735_4988146_-	hypothetical protein	J9RWG0	Pseudomonas_phage	1.6e-23	46.7
WP_012116470.1\|4988145_4989258_-	Mu-like prophage I protein-like protein	M4SNT6	Rhodobacter_phage	2.7e-44	36.7
WP_081437118.1\|4989455_4990307_-	phage virion morphogenesis protein	A0A1B1P725	Rhodovulum_phage	1.6e-12	40.4
WP_012116472.1\|4990197_4991916_-\|head	putative head morphogenesis protein SPP1 gp7	J9STS2	Pseudomonas_phage	7.5e-54	44.1
WP_012116473.1\|4991924_4993559_-	DUF935 domain-containing protein	M4SPR8	Rhodobacter_phage	3.2e-115	43.5
WP_012116474.1\|4993558_4994932_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	8.1e-152	64.1
WP_012116475.1\|4994928_4995510_-	DUF3486 family protein	J9SH37	Pseudomonas_phage	2.8e-05	30.0
WP_012116476.1\|4995511_4995817_-	hypothetical protein	NA	NA	NA	NA
WP_012116477.1\|4995813_4996206_-	hypothetical protein	NA	NA	NA	NA
WP_157048176.1\|4996202_4996487_-	hypothetical protein	NA	NA	NA	NA
WP_012116479.1\|4996416_4996764_-	hypothetical protein	NA	NA	NA	NA
4996622:4996639	attL	NA	NA	NA	NA
WP_012116480.1\|4996763_4997045_-	hypothetical protein	NA	NA	NA	NA
WP_012116481.1\|4997037_4998234_-	DUF3380 domain-containing protein	A0A1X9SGX6	Bradyrhizobium_phage	7.0e-91	50.3
WP_041576116.1\|4998311_4998677_-	hypothetical protein	NA	NA	NA	NA
WP_012116482.1\|4998673_4998940_-	hypothetical protein	NA	NA	NA	NA
WP_012116483.1\|4998939_4999617_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	5.8e-18	32.5
WP_157048177.1\|4999613_4999955_-	hypothetical protein	NA	NA	NA	NA
WP_012116485.1\|4999951_5000218_-	hypothetical protein	NA	NA	NA	NA
WP_012116486.1\|5000214_5000598_-	hypothetical protein	NA	NA	NA	NA
WP_012116487.1\|5000594_5000741_-	hypothetical protein	NA	NA	NA	NA
WP_012116488.1\|5000737_5001148_-	chromosomal replication initiator DnaA domain-containing protein	NA	NA	NA	NA
WP_012116489.1\|5001144_5001408_-	hypothetical protein	A0A0U5KSG7	unidentified_phage	3.2e-09	44.9
WP_012116490.1\|5001404_5001614_-	hypothetical protein	NA	NA	NA	NA
WP_012116491.1\|5001624_5002284_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	3.0e-67	58.6
WP_012116492.1\|5002267_5002624_-	hypothetical protein	NA	NA	NA	NA
WP_157048178.1\|5002620_5002899_-	hypothetical protein	NA	NA	NA	NA
WP_012116494.1\|5002973_5003294_-	hypothetical protein	NA	NA	NA	NA
WP_081437119.1\|5003304_5004273_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-42	35.9
WP_012116496.1\|5004333_5006304_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P6Z4	Rhodovulum_phage	5.8e-127	40.5
5007669:5007686	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009717

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4221 : 56807

Stx2-converting_phage(30.0%)

integrase,transposase

attL 3049:3063|attR 12237:12251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3049:3063	attL	NA	NA	NA	NA
WP_011992914.1\|4221_5313_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041577981.1\|5312_5711_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_041577992.1\|5710_5953_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_011992917.1\|7704_8637_-	recombinase family protein	Q71TD8	Escherichia_phage	1.0e-28	49.0
WP_011992918.1\|8872_9259_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011992919.1\|9258_9516_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_011992920.1\|9687_10638_+	DUF1403 family protein	NA	NA	NA	NA
WP_011992921.1\|10640_11366_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.8e-18	28.9
WP_011992922.1\|11362_12748_+	hypothetical protein	NA	NA	NA	NA
12237:12251	attR	NA	NA	NA	NA
WP_011992924.1\|13918_14905_+	ATP-binding protein	A0A125SJ49	Acidianus_tailed_spindle_virus	5.5e-17	32.4
WP_011992925.1\|14905_17401_+	S8 family peptidase	NA	NA	NA	NA
WP_011992927.1\|18427_19060_-	hypothetical protein	NA	NA	NA	NA
WP_157048325.1\|19235_20729_+	recombinase family protein	A0A2K9V406	Faecalibacterium_phage	2.3e-06	27.1
WP_011992929.1\|20728_21649_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_011992930.1\|21645_22539_+	chromosome partitioning protein	NA	NA	NA	NA
WP_157048298.1\|22611_22908_-	hypothetical protein	NA	NA	NA	NA
WP_041577997.1\|23289_23718_-	DUF305 domain-containing protein	A0A0G2Y9T4	Acanthamoeba_polyphaga_mimivirus	2.6e-08	30.7
WP_081437191.1\|24226_24595_+	hypothetical protein	NA	NA	NA	NA
WP_081437192.1\|24717_25221_-	hypothetical protein	NA	NA	NA	NA
WP_011992937.1\|25491_25998_+\|transposase	transposase	NA	NA	NA	NA
WP_011992934.1\|25994_26342_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.3e-39	65.4
WP_011992935.1\|26438_28040_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	7.4e-96	44.2
WP_011992934.1\|28806_29154_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.3e-39	65.4
WP_157048299.1\|29150_29633_-\|transposase	transposase	NA	NA	NA	NA
WP_011992939.1\|30428_30713_-	copper-binding protein	NA	NA	NA	NA
WP_011992940.1\|30734_31217_-	cupredoxin family protein	NA	NA	NA	NA
WP_011992941.1\|31250_32654_-	copper oxidase	NA	NA	NA	NA
WP_011992942.1\|32671_34099_-	TolC family protein	NA	NA	NA	NA
WP_157048300.1\|34595_35204_-	hypothetical protein	NA	NA	NA	NA
WP_011992943.1\|35414_36731_+	hypothetical protein	NA	NA	NA	NA
WP_041578012.1\|36812_37025_+	hypothetical protein	NA	NA	NA	NA
WP_041578018.1\|37211_37442_+	hypothetical protein	NA	NA	NA	NA
WP_011992944.1\|37506_38196_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011992945.1\|38389_38749_-	hypothetical protein	NA	NA	NA	NA
WP_011992947.1\|39518_39926_+	FixH family protein	NA	NA	NA	NA
WP_011992948.1\|39922_41341_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011992949.1\|41337_44508_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.5e-49	21.7
WP_157048301.1\|44520_44694_+	hypothetical protein	NA	NA	NA	NA
WP_157048302.1\|44696_45143_-	hypothetical protein	NA	NA	NA	NA
WP_011992950.1\|45348_47739_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.3e-87	36.6
WP_011992951.1\|47731_48406_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_011992952.1\|48402_48696_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_011992953.1\|48764_49457_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_081437193.1\|49510_51247_-	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_011992955.1\|51497_51890_-	hypothetical protein	NA	NA	NA	NA
WP_011992956.1\|52462_53956_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_011992957.1\|54057_54855_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011992958.1\|54975_55371_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011992959.1\|55472_56807_-\|transposase	IS1182 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009720

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009717

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection