CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009779	Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence	1 crisprs	NA	0	1	0	0
NC_009778	Cronobacter sakazakii ATCC BAA-894, complete sequence	16 crisprs	cas3,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	1	51	8	2
NC_009780	Cronobacter sakazakii ATCC BAA-894 plasmid pESA3, complete sequence	0 crisprs	WYL,csa3	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009779_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009779_1

50-130

Orphan

Consensus_repeat	Method
TTCAATTTCGGAGAAATTGTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009779_1

>merge|NC_009779|1|50-130|CRISPRCasFinder
TTCAATTTCGGAGAAATTGTTAAGACGTGAAATAAGGAAGTGGAGCGCGGAAAGAAAATTCAATTTCGGAGAAATTGTTAA

>NC_009779|1|1|50-130|CRISPRCasFinder
TTCAATTTCGGAGAAATTGTTAA	GACGTGAAATAAGGAAGTGGAGCGCGGAAAGAAAA
TTCAATTTCGGAGAAATTGTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009779.1\|WP_011998903.1\|6476_7724_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_009779.1\|WP_011998896.1\|751_2488_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274760
NC_009779.1\|WP_011998900.1\|4196_4430_-\|hypothetical-protein	unknown	unknown	unknown
NC_009779.1\|WP_011998901.1\|4470_5118_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_009779.1\|WP_003100853.1\|9089_9461_-\|hypothetical-protein	unknown	unknown	unknown
NC_009779.1\|WP_003100847.1\|8538_9096_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_009779.1\|WP_041460759.1\|5551_6475_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371948
NC_009779.1\|WP_011998897.1\|2496_3246_+\|hypothetical-protein	unknown	unknown	unknown
NC_009779.1\|WP_041460758.1\|3813_4158_+\|hypothetical-protein	unknown	unknown	unknown
NC_009779.1\|WP_011998898.1\|3283_3757_+\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|214615

Protein	Function_ID	Function_description	E-value
NC_009779.1\|WP_011998903.1\|6476_7724_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.09159e-76
NC_009779.1\|WP_011998896.1\|751_2488_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	7.98918e-08
NC_009779.1\|WP_011998901.1\|4470_5118_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.39568e-14
NC_009779.1\|WP_003100847.1\|8538_9096_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.82657e-65
NC_009779.1\|WP_041460759.1\|5551_6475_-\|hypothetical-protein	gnl\|CDD\|371948	pfam12183, NotI, Restriction endonuclease NotI. This family of proteins is found in bacteria. Proteins in this family are typically between 270 and 341 amino acids in length. There is a conserved CPF sequence motif. The type IIP restriction enzyme, NotI, is a homodimer that recognizes the 8 bp DNA sequence 5'-GC/GGCCGC-3' and cleaves both strands of DNA to create 5', 4 base cohesive overhangs.	2.59665e-87
NC_009779.1\|WP_011998898.1\|3283_3757_+\|thermonuclease-family-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	5.01451e-37

>NC_009779.1|WP_011998896.1|751_2488_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MGSHLVQRLNGFADAFSVFLLWLQNSPVILSILAGLTLPFIFHLPREERKNAPFWLKSVACASIFFFIFGTISPLTIQGLSYLFKVLDNNIIFKPVLWGLTIAFTFIGLFFHIMTRRLLAGEIDHLKHRMIKKSKLERNTRTDVREVKEMLPDSITYNPLDYIDISKGVFIGLDKDDHPQYITVEEFQSQHADMIGTTGSGKGVSASVLLYQAILLDEGVFVEDPKNDEWAPHVLREACRVAGKEFTLINLNDLNFQLDLLADINHEQLEELFNAGFSLAKKGEGADFYRIADRRAARKTSAIYEKGMTLRDLFNTDFVKSLEEDVPAFYGELEEIALVNSINATYGFSLKKIFDEGGCCYIIGSMRNQKIISAQRMILTRLIQIAETRDRIKEKPRPIAIFLDELKYHLSRPALEGLGAARDKGVHILMAHQSIKDLYDCPADLDGDAVAGSVVENCKFMLVYRLRDPDTAEWVARMTGSILVDDEMRKVTTDISLTEKMDTDRMIRQAERYYIDSNMLLNLPKFVGFVFTQNDLAKATKLYHIPAKKKYIELLSFEDKSASPAFNESEQERPSIDL
>NC_009779.1|WP_011998897.1|2496_3246_+|hypothetical-protein
MLIHDVTERKKASASKMLSLLSFLKEETYSDFNTLRNVLGFSKNAHSPLYKILNRAVKEGFIIKHEIPGIKQKITIWGITMQGLAMVVTADDHVFPGYFEPGKLRYWTLEHRLLNQRVRIALEEKGGKNWINGDRSEFKARYPGVRHRPDGIITLNSGAVVAVETERSLKTRARYINIINSHLAASDAGRWHYAMYVAPDERIKTALMRLFDSIKTVVRNSVPVPFEGKNREMFLFRTIEELEKSAPAD
>NC_009779.1|WP_011998898.1|3283_3757_+|thermonuclease-family-protein
MKRAAAVLMLFASMHPVLCLADFSGRIVRVIDGDTVQVLTSGEMIRVRLNGIDAPESSQPFGQKAKQNLINLAAQKDSRIESQDKDRYGRWLGTVVINGVNINAEQVKAGMAWAYRYHGRASDENMLRLEQEARQHRIGLWSASNPVEPWKWRNQHK
>NC_009779.1|WP_041460758.1|3813_4158_+|hypothetical-protein
MFLTKFHPLTHKVDALIIRDLKQSMPVKYWLFRLAEWAARIGILGFICVFICYFAMGALIQHAGEPVPSSLAEVSARAIIALLTLFMVGTITRGALFSDLEKRVNEKKWLNDMQ
>NC_009779.1|WP_011998900.1|4196_4430_-|hypothetical-protein
MANVPAKPRNTKGEPPSQQDTEHGFNPTRKSADGRKAQLNLYIDMELKREFRSIAAANDMKHGELFEAYQEFWKKHH
>NC_009779.1|WP_011998901.1|4470_5118_-|ParA-family-protein
MTAVIALANGKGGVKKSSMSRAIATEYTKAGWEVLGLDMDIDQGSFLDWGQRRLRNGFEPPVTIQGCGTVSQAKKQIESGQWDLIVIDSAAYATKSLLSLIDIVDLLVLPTGFSVDDLRTTVTTVNALRNKGHSTDKMAVVFAGVSESESEYRAAVEYLQPCGVPVIPGAIPFLTSFSQAQDKGLALTESPFPGPRQKADDVVQGVIDRLTTLMQ
>NC_009779.1|WP_041460759.1|5551_6475_-|hypothetical-protein
MAGKIWEFFGYRADDHSVAAITAAAEKQCPYLDEKCEKRLSDGVIAGVCTIKPMKSGPVICCPIRLYADKYRILYDVAKIAFDEDYELIAGGKAAERAKATGEPVVAVFGKRWGGELRLPQKDGAGSYFVDWVLALLDANGKLKEFVAVEVQTIDTTGNYRNGREGLLSQERNNPTTTAGMNWENVNKRILPQLIYKGQVLQREALCRKGLFFVCPHPVYTRIMGRLGGSGGLIRYALQPASITFLAYDHDIDMGIIDGNTVPLKALPPHSTTVYKVQEAFNNVTLPDENVYRTAIDIALGCEKGKS
>NC_009779.1|WP_011998903.1|6476_7724_-|DNA-cytosine-methyltransferase
MSQFNSLEMCAASRRLTSLDLFAGAGGLSEGLREAGFTSLYANEISPRYAQTYAVNHPGTIVESRDIREVDAHKIRNLLGLKRGELDLIAGGPPCQGFSINAPKRSTEDSRNHLFREYLRFVSEFQPRAVLIENVPGMVSFEGGATLDAILESLKNLGYEADVRILYAPHYGIPQTRWRTIILGCRDGLNPTELFPEPLRQAPVRVNFTSQFGGKNLVNLPISLELPSHVTVRDAIGDLPSLCNGEIGEQVKSYRHSADNQYQKLMRIGSDGVTCHEAARLSKINLERMAHIPQGGNWTNIPDELLPRGMRMARRSDHTKRYGRVHPDGLASTILTKCDPHWGAYFHYEQDRTFTVREAARLQSFPDTYTFCGSRVEQYEQVGNAVPPLLGAAVGRTIARALGNSQRTVRKVRKV
>NC_009779.1|WP_003100847.1|8538_9096_-|recombinase-family-protein
MLIGYARVSTQDQNLELQREALSKAGCKKVFEDKVSGTRADRPGLAKTLEMLREGDTLVVWKLDRLGRSVKQLVDLVGDLHKHGVQFRSLTDSIDTGTPSGRFFFHVMASLAEMERELTVERTRAGLEVAKQLGRKGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSIPTLYRWVPASTHA
>NC_009779.1|WP_003100853.1|9089_9461_-|hypothetical-protein
MSTSTIEALASAWARIAEEAEFPADYEGTATPQAHRASEAIQEQIRERIVATNDMRLFSLLHLLGQASLRMEQALWPEDYERMTREVEEALRQATDANARSYTHEEVMQAMQERIDRARDKPC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_009779_1	1.1\|73\|35\|NC_009779\|CRISPRCasFinder	73-107	35	NC_013284	Cronobacter turicensis z3032 plasmid pCTU2, complete sequence	54-88	1.0
NC_009779_1	1.1\|73\|35\|NC_009779\|CRISPRCasFinder	73-107	35	NZ_CP026388	Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence	29787-29821	1.0
NC_009779_1	1.1\|73\|35\|NC_009779\|CRISPRCasFinder	73-107	35	CP032292	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed1, complete sequence	35304-35338	1.0
NC_009779_1	1.1\|73\|35\|NC_009779\|CRISPRCasFinder	73-107	35	NC_009779	Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence	73-107	1.0
NC_009779_1	1.1\|73\|35\|NC_009779\|CRISPRCasFinder	73-107	35	MN823994	Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence	10549-10583	1.0

1. spacer 1.1|73|35|NC_009779|CRISPRCasFinder matches to NC_013284 (Cronobacter turicensis z3032 plasmid pCTU2, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtgaaataaggaagtggagcgcggaaagaaaa	CRISPR spacer
gacgtgaaataaggaagtggagcgcggaaagaaaa	Protospacer
***********************************

2. spacer 1.1|73|35|NC_009779|CRISPRCasFinder matches to NZ_CP026388 (Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtgaaataaggaagtggagcgcggaaagaaaa	CRISPR spacer
gacgtgaaataaggaagtggagcgcggaaagaaaa	Protospacer
***********************************

3. spacer 1.1|73|35|NC_009779|CRISPRCasFinder matches to CP032292 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtgaaataaggaagtggagcgcggaaagaaaa	CRISPR spacer
gacgtgaaataaggaagtggagcgcggaaagaaaa	Protospacer
***********************************

4. spacer 1.1|73|35|NC_009779|CRISPRCasFinder matches to NC_009779 (Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtgaaataaggaagtggagcgcggaaagaaaa	CRISPR spacer
gacgtgaaataaggaagtggagcgcggaaagaaaa	Protospacer
***********************************

5. spacer 1.1|73|35|NC_009779|CRISPRCasFinder matches to MN823994 (Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtgaaataaggaagtggagcgcggaaagaaaa	CRISPR spacer
gacgtgaaataaggaagtggagcgcggaaagaaaa	Protospacer
***********************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_009778_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_1

218589-218669

Orphan

Consensus_repeat	Method
CGCTTACCCACCCTACAAGGTGAGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_1

>merge|NC_009778|1|218589-218669|CRISPRCasFinder
CGCTTACCCACCCTACAAGGTGAGATGTGAGATGACGGTATGGTGGGTGCGCTGCGCTTACCCACCCTACAAGATGAGATG

>NC_009778|1|1|218589-218669|CRISPRCasFinder
CGCTTACCCACCCTACAAGGTGAGATG	TGAGATGACGGTATGGTGGGTGCGCTG
CGCTTACCCACCCTACAAGATGAGATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012123727.1\|223589_224942_+\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NC_009778.1\|WP_012123718.1\|212113_213070_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NC_009778.1\|WP_012123726.1\|221398_222607_-\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|379620
NC_009778.1\|WP_004385260.1\|224999_225386_+\|cytochrome-b562	unknown	unknown	gnl\|CDD\|185018
NC_009778.1\|WP_012123729.1\|225708_226032_+\|glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|132621
NC_009778.1\|WP_012123725.1\|219962_221342_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NC_009778.1\|WP_004385262.1\|226048_226411_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
NC_009778.1\|WP_012123720.1\|213315_214818_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_009778.1\|WP_004387569.1\|208954_209290_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|225016
NC_009778.1\|WP_004385258.1\|222930_223482_-\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NC_009778.1\|WP_007871058.1\|226739_227516_+\|DUF4311-domain-containing-protein	unknown	unknown	gnl\|CDD\|274659
NC_009778.1\|WP_012123722.1\|215840_216830_+\|sugar-ABC-transporter-permease-YjfF	unknown	unknown	gnl\|CDD\|183235
NC_009778.1\|WP_012123717.1\|209537_211133_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NC_009778.1\|WP_041460365.1\|214831_215854_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_009778.1\|WP_014728014.1\|203445_205179_+\|autotransporter-assembly-complex-protein-TamA	unknown	unknown	gnl\|CDD\|223801
NC_009778.1\|WP_004385263.1\|226414_226717_+\|DUF4312-family-protein	unknown	unknown	gnl\|CDD\|213831
NC_009778.1\|WP_004388179.1\|211184_211712_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NC_009778.1\|WP_012123716.1\|205175_208952_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NC_009778.1\|WP_012123723.1\|216940_218506_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NC_009778.1\|WP_012123724.1\|218788_219787_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012123727.1\|223589_224942_+\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	0
NC_009778.1\|WP_012123718.1\|212113_213070_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	2.26143e-142
NC_009778.1\|WP_012123726.1\|221398_222607_-\|aldose-1-epimerase-family-protein	gnl\|CDD\|379620	pfam14486, DUF4432, Domain of unknown function (DUF4432).	1.97041e-155
NC_009778.1\|WP_004385260.1\|224999_225386_+\|cytochrome-b562	gnl\|CDD\|185018	PRK15058, PRK15058, cytochrome b562; Provisional.	7.05355e-59
NC_009778.1\|WP_012123729.1\|225708_226032_+\|glycine-dehydrogenase	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	3.61367e-37
NC_009778.1\|WP_012123725.1\|219962_221342_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_009778.1\|WP_004385262.1\|226048_226411_+\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	6.59449e-62
NC_009778.1\|WP_012123720.1\|213315_214818_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_009778.1\|WP_004387569.1\|208954_209290_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|225016	COG2105, COG2105, Uncharacterized conserved protein [Function unknown].	6.38826e-40
NC_009778.1\|WP_004385258.1\|222930_223482_-\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	7.08871e-85
NC_009778.1\|WP_007871058.1\|226739_227516_+\|DUF4311-domain-containing-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	1.9782e-157
NC_009778.1\|WP_012123722.1\|215840_216830_+\|sugar-ABC-transporter-permease-YjfF	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	3.00942e-179
NC_009778.1\|WP_012123717.1\|209537_211133_+\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.08758e-95
NC_009778.1\|WP_041460365.1\|214831_215854_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	7.33788e-71
NC_009778.1\|WP_014728014.1\|203445_205179_+\|autotransporter-assembly-complex-protein-TamA	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	0
NC_009778.1\|WP_004385263.1\|226414_226717_+\|DUF4312-family-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	2.6764e-42
NC_009778.1\|WP_004388179.1\|211184_211712_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	8.81577e-133
NC_009778.1\|WP_012123716.1\|205175_208952_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_009778.1\|WP_012123723.1\|216940_218506_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	3.41675e-108
NC_009778.1\|WP_012123724.1\|218788_219787_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0

>NC_009778.1|WP_012123723.1|216940_218506_+|Tar-ligand-binding-domain-containing-protein
MLRNLSIRTGLLTLLAVMAVLLLLVSAMGIYSLTQSSASLQRINALQGEKMMRLNEGYTLLLRARNEAGQAVRQMEIGMVDDATASVKTIAGELVRGQQLLKTVLTSEVDDEQGALLLGKLNQSFNALNGQGLAPMMAALNKQSPDDYYDLLGNGLIPLTRAFDNDVQAFQRWGEARGRQEVNGVLTQKQVMLALIGLVALLTAAVMTLVWLALRHLLLKPLAQSVEQLEHVAAGDLTRSLAATSNNELGRLVNAIEAMRLSLAQSVMRVRDASAQIDTGSRELAAGNVDLAQRTESTATSLEQTAASMEQITATVKQNADNAGMAHQLAKAVSDTADRGSEMVCYVIEKMRDISGSSNRIGDILSVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAEAAKEIRALISNSQSQVGEGSELAMQAGETMDEIAEEVLRMTKLVREIADASLEQSRGIEQVNIAVSQMDETAQQNAALVQQSSAATRSLEEQAQQLVEAMASFRLQTAG
>NC_009778.1|WP_012123722.1|215840_216830_+|sugar-ABC-transporter-permease-YjfF
MIKRNLPLTITLAVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGMSPLVAFPLILLMGCAFGALMGWLINALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSVTVRIYMLSTGLATLAGIVFSIYTSAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGLLLFIFIALQRGLTVLWENRQSAEVTRVTPR
>NC_009778.1|WP_041460365.1|214831_215854_+|ABC-transporter-permease
MPRSLPDTGAPKRRLRFPPGMPQIAALMLVLLVDGLVADHFFQIVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATAATLTVGGHSLAVVILASLGVGVLAGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPSLAWLGSGSLFFFPTPVIIAILTLLAFWLFTRKTALGMFIEAVGINIRAAKNAGVSTRLIVMLTYMLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLALSVVGALIIQGMNTGILLSGFPPELNQVVKAVVVLCVLIVQSPRFIGLIKGVRRYDKT
>NC_009778.1|WP_012123720.1|213315_214818_+|sugar-ABC-transporter-ATP-binding-protein
MNNDNHQEILRTEGLSKTFPGVKALDHVDFSLRRGEIMALLGENGAGKSTLIKALTGVYQPDGGTIYLGGEAVRPRNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPRRFGLLRRKEMEKRATALLESYGFHLDVREPLNRFSVAMQQIVAICRAIDLSARVLILDEPTASLDAKEVEMLFTLMRQLRAQGVSLVFVTHFLDQVYEVTDRITVLRNGKFVGTRDTADLPQIELVKMMLGRELESNALQRAGRTLLSEKPVAAFHDYGKKGVIAPFSLEVRPGEIVGLAGLLGSGRTETAEVIFGIHPADSGTATIKGKPQTLRSPQQASRLGIGFCPEDRKTDGIIGAASVRENIILALQAQRGWLRPIPRREQDEIAARFIRQLGIRTPGPEQPIEFLSGGNQQKVLLSRWLLTKPQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIILRDRQQVAEIPLEDLSVGAIMNAIAA
>NC_009778.1|WP_012123718.1|212113_213070_+|ABC-transporter-substrate-binding-protein
MWKRLLVVTAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETSVAKSEAQKRGITLKVADGQQKQENQIKAVRSFIAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVILLDRSIDVKDKSLYMTTVTANNVLEGKLIGDWLVKTVAGKPCNVVELQGTVGASVAIDRKKGFAEAISKAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMAIGAIQAIKEAGLKPGKDILTGSIDGVPDIFKAMADGEANASVELTPNMAGPAFDALEKFKKDGTQPPKLTITESVLYLPDTAKEMLEKKKTMGY
>NC_009778.1|WP_004388179.1|211184_211712_-|inorganic-diphosphatase
MSLLNVPAGKDLPEDIYVIIEIPANADPIKYEVDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLEKGKWVKVEGWDNAEAAKEEIRASFERAKK
>NC_009778.1|WP_012123717.1|209537_211133_+|HAMP-domain-containing-protein
MKLNHLTIGQRLGLLAALLLVAVLFIGIRGLTINADGLEQNNNIMATEKVIAESIDTARNAQVQFKIQVQEWKNTLLRGTQGQAAFDKYKAAFVDQSDKTQALLNRLATLLPQLGMGVDEVRQTIAKHEELEKSYLAAIAQYNIADPTSAQHVDKLVSGIDREPTRMIDDVVAKTLKQADALTRQTEARNLAQYQQTRTMLLITMALTLIASILITFWLVRSITRPLAQAVIIARNVAAGDLQTTITVSGRDETAELMGALQEMNGNLTRIVSGVRSGTETIATASAQIATGSRELSARNEAQASALEETAASMEELTSVVKNNAENSRFASDIARDACQVAGQGGEVVERVVQTMSEIHQFSTEISNIISVIDGIAFQTNILALNAAVEAARAGAEGRGFAVVAAEVRALAQRSSSAAQDIRNLIDRSVSRIAEGNSLVKGAGSAMEDILKSVQRVSELVETISMANREQSTGIDQVNIAVTQMDASTQQNAALSQESAAAAQSMQYQAEKLLDSVSVFRLAAHRDEALA
>NC_009778.1|WP_004387569.1|208954_209290_+|gamma-glutamylcyclotransferase
MRIFVYGSLRRKQGNSHWMTNAQWLGDYDIENYQLFSLGHYPGAVPGEGSVVGEVYRIDATTLAELDALRTARGEYKRQLIQTPYGSAWMYVYQRPTEGLTRIESGNWLDR
>NC_009778.1|WP_012123716.1|205175_208952_+|translocation/assembly-module-TamB
MSRMKKISLAVLAVVVLLIATVGFLVGTTTGLHLVFNAANRWVPGLDIGRVTGGWRDLTITSLRYQQPGVDVNAGEIHLSVKLACLRDSSLCVNDFSLKDINVVVDTKKMPPAAKVEEEESGPLDLSTPYPITLSRAALHNVNIKIDDTLVSVMDFSSGLAWESRNLTLKPTSLQGLLIALPKAADVAQEEVIEPKVNNPQPQEKPLGETLRELFAKPVLPEMTDVHLPLNLTVENFHGEQLRLTGDTDITVSNLLLKISSVDGVTKLDTLDIDSNQGTVNATGSAELRNNWPVDITLNSTLNVEPLKGEKVKLKVGGALRDQLEFGVNLSGPVDVVLRGQTKLAEAGLPLNLDITSEQLYWPLTGPKQYQADDLKLKLSGKMTDYALSFRTAVKGDQLPPATITLDGKGNEQQINIDKLDVAALQGHTTLTALLDWQQAISWRGELALKGINTAKQYPEWPSKLDGLMKLRGSLYGGTWQLDVPELKLAGNVKQNKVKVDGQLKGNSYLQWTIPGLHLELGRNKADVKGELGVKDLALDATIDAPALDNALPGLGGTAKGLVKIRGNVEAPELNADVTARNLRWQELSVAQVRLLGDVKSTDQIGGSLDLRVERLVQGDINLRLITLAAKGNEKSHQMALRVQGEPVSGQLDLRGSFDRQAMRWRGEIDNTRFATPVGPWALSRALTLDYRGQEQKIAIGPHCWRNPNAELCVPQTIDAGATGRAQVNLNRFDLAMIKPFMPEETQASGLFTGKADVSWDTTKEGLPQGQVQLAGRGVRVTQLVNGNPLLVAFDTLNLNAELRNNRARLNWLIRLANNGQFDGDIQVADPQERRNLSGNINIRNFSLAIANPVFSRGEKAAGILSANLRLGGDARQPQLFGQMQLNGVDIEGNFMPFDMQPSQLAMNFNGMSSTLQGVVRTKQGEIALNGNADWSQIDNWRARVAARGSRVRITVPPMVRLDVSPDVVLEATPSLITLDGRVDVPWARIVVHDLPESAVGVSSDEVLLDENLKPEEEQHASIPINSNLIVHVGNNVRIDAFGLKARLTGDLKVAQDKQGLGLNGQINIPEGRFHAYGQDLLVRKGELLFSGPPDRPLLYIEAIRNPDATENDVIAGVRVTGETDEPKVEVFSDPAMSQQEALSYLLRGQGLESGQSDSDAMTSMLIGLGVAQSGQVVGKIGETFGVSNLALDTEGVGDSSQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDVLYQFEF
>NC_009778.1|WP_014728014.1|203445_205179_+|autotransporter-assembly-complex-protein-TamA
MPLIRNLCWATLLVAGASTAAPVRLQVEGLTGALQKNVRAQLSTIQTDEVTPDRRFRARVDDAIRNGLKALGYYEPTIDFELREPPPGGRRQVLLARVNAGKPVLIAGTNVILRGGARDDKEYLALLKKRPAIGTVLNHNDYDSFKKGLTSLALRRGYFDSEYKKSQLGVSVERREAFWDIDYDSGQRYRFGDVTFSGSQIREEYLQNLVPFKKGDYYQSSDVAELSRRLSATGWFNSVVVAPEFEKSRKTKVLPLRGVVSPRIKNTVEVGAGYSTDVGPRLKANWRKPWINSYGHSLTTSTSISAPEQQLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTEADSTTLAVSRYWDLSSGWQRAINLRWSLDHFTQANVTHTTMLLYPGVMLSRTRSRGGLMPTWGDSQRYSIDYSDSAWGSDVDFVVLQAQNVWIRTLYDKHRFVARGNLGWIETNDFERVPPDLRFFAGGDRSIRGYKYKSISPKDDDGKLTGASKLATGSLEYQYNVTGKWWGAVFVDSGEAVNDIKQSNFKTGAGVGVRWQSPVGPIKVDFAVPVGDKEEHGLQFYIGLGPEL
>NC_009778.1|WP_012123724.1|218788_219787_-|class-1-fructose-bisphosphatase
MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGVENVQGETQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTMEDFLQPGSQQVAAGYVVYGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPQSGNTYSINEGNYIKFPMGVKKYIKYCQEEDKATQRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPEGKLRLLYECNPMAFLAEQAGGKASDGKQRILDIKPDSLHQRRPFFVGTEQMVNDVERFIREFPDA
>NC_009778.1|WP_012123725.1|219962_221342_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MRIHILGICGTFMGGVAMLARSLGHEVTGSDANVYPPMSTLLEKQGIDLIQGYDASQLEPRPDLVVIGNAMTRGNPCVEAVLEKGIPYMSGPQWLHDFVLRDRWVVAVAGTHGKTTTAGMATWILEACGYKPGFVIGGVPGNFDVSARLGDSPFFVIEADEYDCAFFDKRSKFVHYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIWPENDINLKQVMAMGCWSEQEQLGEQGRWQAKKLTNDASKWEVWLDGECVGQVEWQLVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSNTMKMGVCKDDLAPSLGRADEVFLFQPHHIPWQVAEVADACIQPAHWSADIDTLVEMIVKTAQPGDHILVMSNGGFGGIHQKLLDALAKKAEKAQAL
>NC_009778.1|WP_012123726.1|221398_222607_-|aldose-1-epimerase-family-protein
MNKTVWLTPLALLISAQVSAQTWVLTDAEQGVEKGNWQISSQKLKLSGAPFSIEQKVLHGGKQEGSKIITITSKDGLTITLSPTRGMNLLRADGFGVRMGWDSPVKEVVNPAYINLESRNGLGWLEGFNEMMVRCGYEWTGHPTTADGQLYTLHGKAGNTPASRVEVEVSDKAPYEIKVRGLLKESTFKKADLQTLTELRYVPGSNSFSINDVLTNHADYPHDYQIIYHSNFGQPILEEGARFIAPLEKVSPFNDYAKGGLKEWNTYSGPTKGFDEMVFNLTPLGDAKQESVAAVVNKAGDKGAAISFNLQQLPVLTMWKNTDTLKQGYVTGIEPGTSYAYPVTIEREQKRVKQLAPGESTRFDLTYTLLHNAQQVSDVEKRIADIQGDKKTTQEETPIAKE
>NC_009778.1|WP_004385258.1|222930_223482_-|ribosome-associated-protein
MTKQPDDWLDEVPDNENDDDDDEIIWVSKSEIKRDAEELKRLGAELVDLGKNALDKIPLDDDLRAAIELAQRIKKEGRRRQMQLIGKMLRQRDDEPIRQALDKLKNRHNQQVALFHKLEQLRDRLIEEGDDAVPDVLNLWPQADRQQLRSLIRNAKKEKEGNKPPKSSRLIFQYLRELAESEQ
>NC_009778.1|WP_012123727.1|223589_224942_+|metalloprotease-PmbA
MALAMKVITQVEAQRKALEQAVSQALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPDAIARTVQAALDIARYTSPDPCAGVAEKDLLAFDAPDLDLFHPAEIEPEQAIDYAARAEQAALKADKRITNTEGGSFNSHYGIKVFGNSHGMLQSYCSTRHSLSSCVIAEENGDMERDYAYTIGRALGDLQSPEWVGEECARRTLSRLSPRKLPTMKAPVIFGREVATGLFGHLVGAISGGAVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASTPFDSEGVATSRRDIIKDGVLQQWLLTNYSARKLGLKSTGHAGGIHNWRIKGRGLSFEQLLKEMGTGLVVTELMGQGVSGITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKEMWRNMVTIGDDIETRSNIQCGSVLLPEMKIAGE
>NC_009778.1|WP_004385260.1|224999_225386_+|cytochrome-b562
MRKQALAMLAVSSLLFTSAAAWADLEDNMDTLNENLKVVQKTSDAAEMKTALTKMREAALDAKKETPPKLEDKPADSPEMKDFRHGLDTLVSQIDGALKLVDEGKIKEAQASAEEFKTTRNTYHKKYR
>NC_009778.1|WP_012123729.1|225708_226032_+|glycine-dehydrogenase
MNNAGCQHADETATLAGRMLDEVYALLERHQITPNAVQRQMLSSHVRAMAHRSVTGEPLPEVEESLFEEISESSMALAREIVAQFGNLPDEEAWLLSVHFEVAKENL
>NC_009778.1|WP_004385262.1|226048_226411_+|hypothetical-protein
MEQITVVIGDRLGKGQKVAAGAEKAGARAVVVPGVAADMKLGDVMKTEGATFGISFCGSGGAGAITAQTKHGYKAKYGMRSVEEGVTAINEGCNVLGFGFMDKEELGERLVEAWKKKYGA
>NC_009778.1|WP_004385263.1|226414_226717_+|DUF4312-family-protein
MKEQFTTTVRVKGKGDTRARAFADALNQVQAAVMKASPHILLRIEPQDVQVVHARETVRKEAFLFFFLRRERRAFSVELDVTVNVTAINLDKVDFVTQHS
>NC_009778.1|WP_007871058.1|226739_227516_+|DUF4311-domain-containing-protein
MFLIILIKSLIIGGLVGVGVGAGAARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALMVKNRNLADTLHNPKKMAVACGLIGMGVVAFLNTTASAVPEALQVTAVKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATVFGGAAQLIMGNAVPGLVLGILIGKGVEESGWNRVTKVMMTAIVLLFVLSAFFRGFDMKMIESFRLTVPDWLSLIHNSLSGK

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Crispr_ID: NC_009778_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_2

406232-406341

Orphan

Consensus_repeat	Method
GGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_2

>merge|NC_009778|2|406232-406341|CRISPRCasFinder
GGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACGCCAGCAAATCCGGCCGGTTTTCAGCATCGTAGTGTAGGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACG

>NC_009778|2|2|406232-406341|CRISPRCasFinder
GGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACG	CCAGCAAATCCGGCCGGTTTTCAGCATCGTAGTGTA
GGTAAGCGCAGCGCACCCACCGTATCGTCAAACCACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004385658.1\|395520_395850_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NC_009778.1\|WP_007777939.1\|409400_410054_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NC_009778.1\|WP_012123843.1\|396613_397930_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_009778.1\|WP_004385676.1\|412102_412624_-\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NC_009778.1\|WP_007892620.1\|399115_400318_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NC_009778.1\|WP_004385677.1\|412725_413622_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NC_009778.1\|WP_007870701.1\|411425_411692_+\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NC_009778.1\|WP_012123849.1\|402381_405255_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_009778.1\|WP_012123852.1\|408038_408767_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_009778.1\|WP_012123853.1\|408943_409258_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NC_009778.1\|WP_012123856.1\|411672_412089_+\|protein-YgfX	unknown	unknown	gnl\|CDD\|369290
NC_009778.1\|WP_041460682.1\|394682_395279_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NC_009778.1\|WP_004385667.1\|401861_402251_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_009778.1\|WP_012123854.1\|410158_411148_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NC_009778.1\|WP_004385678.1\|413644_414364_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NC_009778.1\|WP_012123844.1\|397926_399105_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_009778.1\|WP_012123851.1\|406453_407887_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NC_009778.1\|WP_041460380.1\|405422_406166_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NC_009778.1\|WP_012123847.1\|400740_401838_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_009778.1\|WP_004385660.1\|396011_396590_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004385658.1\|395520_395850_-\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	1.47359e-64
NC_009778.1\|WP_007777939.1\|409400_410054_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	1.00783e-132
NC_009778.1\|WP_012123843.1\|396613_397930_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_009778.1\|WP_004385676.1\|412102_412624_-\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	1.37655e-128
NC_009778.1\|WP_007892620.1\|399115_400318_+\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_009778.1\|WP_004385677.1\|412725_413622_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	0
NC_009778.1\|WP_007870701.1\|411425_411692_+\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	9.33109e-49
NC_009778.1\|WP_012123849.1\|402381_405255_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_009778.1\|WP_012123852.1\|408038_408767_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.80994e-57
NC_009778.1\|WP_012123853.1\|408943_409258_+\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	8.91726e-61
NC_009778.1\|WP_012123856.1\|411672_412089_+\|protein-YgfX	gnl\|CDD\|369290	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system. CptA is a family of bacterial proteins named for the member of this family, YGFX_ECOLI. YgfX was previously thought to be the toxic part of a toxin-antitoxin module along with the antitoxin, pfam03937 Sdh5. However, studies have shown that, YgfX interferes with correct cell division and morphology. Furthermore, the function of YgfX-SdhE as a TA system could not be demonstrated in either E. coli or Serratia sp. ATCC 39006. YgfX is predicted to have a short N-terminal cytoplasmic domain followed by two transmembrane helices (TMHs) separated by a short periplasmic loop and finally, a larger C-terminal cytoplasmic domain. The TMHs of YgfX are required for activity, but the sequence of the cytoplasmic 13 N-terminal amino acids is not essential. Furthermore, the amino acids W34 and D117 are not required for localization but are necessary for YgfX multimerization, interaction with SdhE, and YgfX activity. It is proposed that the formation of YgfX multimeric membrane-bound proteins are required to enable the interaction with the cytoplasmic SDH assembly factor SdhE. Another study has demonstrated that sdhEygfX (bicistronic operon) affects pig biosynthesis, directly or indirectly, at the level of transcription of the biosynthetic operon (pigA-O). It has also been suggested that, in addition to indirect transcriptional activation of pigA-O, YgfX might facilitate the formation of a terminal pig biosynthetic complex consisting of PigB and PigC.	2.198e-59
NC_009778.1\|WP_041460682.1\|394682_395279_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	1.82722e-108
NC_009778.1\|WP_004385667.1\|401861_402251_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.30505e-73
NC_009778.1\|WP_012123854.1\|410158_411148_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NC_009778.1\|WP_004385678.1\|413644_414364_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	5.56604e-171
NC_009778.1\|WP_012123844.1\|397926_399105_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NC_009778.1\|WP_012123851.1\|406453_407887_-\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NC_009778.1\|WP_041460380.1\|405422_406166_+\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	6.25817e-167
NC_009778.1\|WP_012123847.1\|400740_401838_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_009778.1\|WP_004385660.1\|396011_396590_+\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	2.11265e-121

>NC_009778.1|WP_041460380.1|405422_406166_+|SDR-family-oxidoreductase
MSVALITGASRGIGRATALLLGAQGYTVAVNYLHNAAAAQEVVERIVASGGRAFAIQADISDEPQVMAMFRTLDEQDEPLGALVNNAGVLFTQCMTENLTAERINKVLATNVTGYFLCCREAVKRMAHHHGGQGGAIVNVSSAASRLGAPGEYVDYAASKGAVDSLTIGLSLEVAAQGIRVNGVRPGLIYTDIHASGGEPGRVDRVKSALPMQRGGQPEEVAEAIAWLLSDKASYVTGSFLDLAGGK
>NC_009778.1|WP_012123849.1|402381_405255_+|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSHLENRDAFIERHIGPGVDQQQEMLRTVGADSLDALISQIVPADIQLATPPDVGDAATEFAALAELKAIAGRNKRFKNYIGMGYTAVHTPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFEVIVDDAPKALDHQDLFGVLLQQVGTTGEVHDYRELISELKSRKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAASDEFKRSMPGRIIGVSKDAAGRTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIASRIHRFADILAAGLQHKGLKLRHATWFDTLCVEVADKATVLARAEASEINLRSDIPGAVGITLDETTTRADVQALLRVVTGEDATFDIDALDKEVAHDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPADQAEGYLQMISQLSDWLVKLTGYDALCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKQGNIDLADLRAKAETAGDKLSCIMVTYPSTHGVYEETIREVCDIVHQYGGQVYLDGANMNAQVGITSPGYIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTSQGAVSAAPFGSASILPISWMYIRMMGSQGLKKASQTAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEATGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRGEIDRVAQGEWPQDDNPLVNAPHVQRELAQEWEHAYSRELAAFPAGFENKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NC_009778.1|WP_004385667.1|401861_402251_+|glycine-cleavage-system-protein-GcvH
MSNVPNELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPDVGTTVNAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYGQGWIFKIKASDEAEVAALLDASAYEALLEDE
>NC_009778.1|WP_012123847.1|400740_401838_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHNLCGARMVDFHGWMMPLHYGSQIDEHHAVRNDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFMTEDYFRLVVNSATREKDLAWINEHAEPYGVSVTVRDDLSLIAVQGPNAKAKAATLFTDAQRKATEGMKPFFGVQADDLFIATTGYTGEAGYEIAMPNEKAAGFWSQLVEAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWQPEDRAFIGRDALEAQRENGTEQLVGLVMTEKGVLRGELPVRFTDDQGNAREGIITSGTFSPTLGYSIALARVPAGIGDTAIVQIRNREMPVKVTKPIFVRAGKPVTQ
>NC_009778.1|WP_007892620.1|399115_400318_+|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLEGSGLRVAVLEQRAPEPLEASAPPALRVSAINAASEALLKKLDVWDAILRQRAAAYHGMEVWEKDSFGRIAFDDASFGFSHLGHIIENQAIHYALWQKAQQCKSVTLMAPATLQQVAWGENEAFLTLEDGNMLTARLVIGADGANSWLRTKAEIPLTSWDYQHHALVATIRTDEPHGGVARQVFHGDGILAFLPLSDPHLCSIVWSLSPQEADRMQQAPVSTFNQALCVAFDNRLGLCSLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELISELRRLHQQGKDIGQHLYLRRYERSRKHAAAMMLAGMQGFRELFSGANPAKKLLRDLGLTLADKLPGVKPQLIRQAMGLNDLPEWLR
>NC_009778.1|WP_012123844.1|397926_399105_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVIIAGGGMAGATLALALSRFTHGALEVHLVEASAPESAAHPGFDARAIALADGTCRELARVGVWQALAPCATPITTVHVSDRGHAGFVTLNARDYQTQALGNVVELHDAGQRLFSLLRKAPGVHLHCPARVTAITRRDETVSVQLDNGETLEGQLLVAADGSRSSIGAQCGIKWRQQPYHQAAIIANVATALPHQGRAFERFTEHGPLALLPMSGGRSSLVWCHPLDKQAEVLGWSDERFCRELQTAFGWRLGRITHAGARSGYPLALSLASRVISHRTALVGNAAQTLHPIAGQGFNLGLRDVMTLAETLAQAFVRGEDIGAYPVLGAYQQRREQDKAATIGVTDGLVQLFANRWSPLVVGRNLGLMAMDLFTPARDALARRTLGWVPR
>NC_009778.1|WP_012123843.1|396613_397930_+|Xaa-Pro-aminopeptidase
MTQQEFLRRRQALLAKMAPASAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDETHSHSVIFNRLRDKTAEIWFGRRLGQEAAPAKLGVDRALAFNEIDEQLYQLLNGLDVVYHAQGEYAYADAIVFAALDKLRRGARQNLSAPATLTDWRPWVHEMRLFKSPEELVVMRRAGEISALAHTRAMQKCRPGMYEYQLEGEILHEFTRHGARFPSYNTIVGGGENGCILHYTENESQLRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRAVYDIVLESLETALRLFRPGTSIQDVTGDVVRVMVKGLIGLGILKGDVEQLVAENAHRPYFMHGLSHWLGLDVHDVGFYGPDRSRILAPGMVITVEPGLYIAPDADVPEEYRGIGIRIEDDIVITETGNENLTASVVKSADDIEALMAAARRS
>NC_009778.1|WP_004385660.1|396011_396590_+|YecA-family-protein
MSIQNEMPGYDEVGQLLNQQGVGLTPAEMHGLISGILCGGNHDSSWQPLLHDLTNEGLAFGQQLAQALRQLHAATSDTLEDDGFLFQLWLPDGDDVSVFDRADALAGWVNHFLLGLGVTQPKLDKITGETGEAIDDLRNIAQLGYDEGEDQEELEMSLEEIIEYVRVAALLCHDTFTRQSPTAPEVKKPTLH
>NC_009778.1|WP_004385658.1|395520_395850_-|cell-division-protein-ZapA
MSAQPVDIQIFGRSLRVNCPPEQRDALNQAADELNQRLQDLKVRTRVTNTEQLVFIAALNICYELAQEKVKTRDYAANMEQRIRMLQQTIEQALLEQGRISERAEPKFE
>NC_009778.1|WP_041460682.1|394682_395279_-|5-formyltetrahydrofolate-cyclo-ligase
MTELPVTSDLRQHIRKEIRQKRRALTAHQQAHFAEQAAARMLGFAPVVEAKSVAVFLSFDGELDTRPLIEGLWRAGKQVYLPVLHPFSPGNLLFLRYLPDSLLATNRLKILEPALDVRHVLPLDRLDVLITPLVAFDRTGQRLGMGGGFYDRTLQNWRAHRFLPVGYAHDCQQVESLPVQEWDIPLPVVVTPTKIWRW
>NC_009778.1|WP_012123851.1|406453_407887_-|6-phospho-beta-glucosidase
MKQLKLPKDFLWGGAVAAHQVEGGWDQGGKGPSICDVLTGGAHGVPREITQEVVPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPNGDETQPNEAGLQFYDDMFDELLKYNIEPVITLSHFEMPLHLVKQYGGWTNRKVVDFFVRFAEVVFERYKNKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFVASAMAVKIGHRINPEMQIGCMLAMVPLYPFSCKPEDVMYAQESMRERYVFTDVQLRGYYPSYVLNEWERRSFNIKMEEGDEQVLREGCCDYLGFSYYMTNAVKADGGSGDALSGFQGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDNVEADGSINDDYRIDYLRAHIEQMMKAVTHDGVELLGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFAWYKAVIASNGETL
>NC_009778.1|WP_012123852.1|408038_408767_-|MurR/RpiR-family-transcriptional-regulator
MFTHSAVASLNNLEMMVYNFVVKNRDKVMYMTIRELADAAGVSTTTVLRFCRKMHCEGYSEFRVRFKLYLEQNEPQQANFGASEIISFSRSVNNDEFDALLDRATDIILQSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTSDMAKNALAIVLSVSGETEEILRFASQFSLHHCKVLSVTSHENSSLAKLADFNLSWHIPQTRIAGVYDITTQIPVIYILETLGRKLAKKLA
>NC_009778.1|WP_012123853.1|408943_409258_+|ASCH-domain-containing-protein
MKNDITFYTRFQQDILAGTKTITIRDESEAHFMPGQRLRTGRYEDNGYFCTLEVLRVTPVTLAQLNEEHARQENMTLAELKKVIADIYPGINELYVIAFKKVEG
>NC_009778.1|WP_007777939.1|409400_410054_+|hemolysin-III-family-protein
MVRKPLLAQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDSNASATAITSYSLYGGSMILLFLASTLYHAIPHARAKTWLKKFDHCAIYLLIAGTYTPFLLVGLKSSLAHGLMIVIWSLALLGILFKLTIAHRFKVLSLVTYLTMGWLSLVVIYQMVMKLAPGSVTLLAAGGIIYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIR
>NC_009778.1|WP_012123854.1|410158_411148_-|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPAASARLPLTLISLEDWALATITGPDSEKYLQGQVTADVTELGENQHLLVAHCDAKGKMWSNLRLFRHGDGFAWIERRSVRDTQLAEMKKYAVFSKVTIAPNDDAVLLGVAGFQARAALANHFATLPDEQNPRVVDGATTLLWFGLPAERFMVITDAETASQLSDKLHGEAQLNASAQWLALDIEAGFPVIDAPNSNQFIPQATNIQALGGISFKKGCYAGQEMVARAKFRGANKRSLWYLAGHGSRVPQPGEDIEMQMGENWRRTGTVLAAVQLDDGRLLAQVVMNNDLETGTLFRVREESGAHTLHIEPLPYSLEEA
>NC_009778.1|WP_007870701.1|411425_411692_+|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYDYDSLSDEDKRVFVRLLECDDPDLFNWLMNHGKPADAELARMVELIQQRNQARGPVAL
>NC_009778.1|WP_012123856.1|411672_412089_+|protein-YgfX
MVLWHSDLRVSWRSQWLSLLLHGAVAVIILLLPWPLRYLPVWMLLLSLVVFDCVRSQRRINAFQGEVSLTADYYLRWQGVDWQICATPWMLRSGMMLRLRHPKTTRRHHVWLAADSMTEAEWRDLRRLLLQQPVGDKR
>NC_009778.1|WP_004385676.1|412102_412624_-|flavodoxin-FldB
MNIGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPTLMEQYDVLILGIPTWDFGELQEDWEAIWEQLDALNLDGKIVALYGMGDQLGYGEWFLDALGMLHDKLSPKGVKFVGYWPTEGYEFTSAKPVIADGELFVGLALDETNQYDLSDARIESWCEQILGEMAAHFS
>NC_009778.1|WP_004385677.1|412725_413622_+|site-specific-tyrosine-recombinase-XerD
MEQDLARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTVEEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>NC_009778.1|WP_004385678.1|413644_414364_+|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKKTIALLSVTLAAFSGFAQADDAAIKQSLTKLGVANAEIQPSPLAGMKTVLTESGVIYVTEDGKHIIQGPLYDVSGGQPVNVTNQMLMTKLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEEMKDYNALGITVRYLAFPRQGPRSETAKDMQAIWCAKDRNKAFDNAMSGGKVEAASCDVDTAKHYELGVQFGVQGTPAIVLSNGAMVPGYQGPKEMKAFLDEHQKQLQASGK

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Crispr_ID: NC_009778_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_3

1175101-1175186

Orphan

Consensus_repeat	Method
GGCGGGTAAGCGAAGCGCACCCGCCATAT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_009778_3

>merge|NC_009778|3|1175101-1175186|CRISPRCasFinder
GGCGGGTAAGCGAAGCGCACCCGCCATATTAAAACCAACTCCATTTCCCGTTAGTAAGGCGGGTAAGCGCAGCGCACCCGCCATAT

>NC_009778|3|3|1175101-1175186|CRISPRCasFinder
GGCGGGTAAGCGAAGCGCACCCGCCATAT	TAAAACCAACTCCATTTCCCGTTAGTAA
GGCGGGTAAGCGCAGCGCACCCGCCATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004385325.1\|1179365_1179839_+\|DNA-gyrase-inhibitor-SbmC	unknown	unknown	gnl\|CDD\|182195
NC_009778.1\|WP_041460461.1\|1180039_1181098_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NC_009778.1\|WP_029464225.1\|1181984_1183457_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|182293
NC_009778.1\|WP_012124357.1\|1176716_1177868_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_009778.1\|WP_097566144.1\|1173501_1173564_+\|membrane-protein-YoeI	unknown	unknown	unknown
NC_009778.1\|WP_007794764.1\|1173553_1174915_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_009778.1\|WP_071601073.1\|1169984_1170035_-\|his-operon-leader-peptide	unknown	unknown	unknown
NC_009778.1\|WP_015386526.1\|1175211_1176639_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_009778.1\|WP_012124349.1\|1167629_1168934_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_009778.1\|WP_012124363.1\|1186370_1187672_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NC_009778.1\|WP_004385874.1\|1170215_1171040_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_009778.1\|WP_004385327.1\|1181266_1181605_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NC_009778.1\|WP_012124352.1\|1171023_1171803_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|183101
NC_009778.1\|WP_012124362.1\|1183848_1186371_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|273730
NC_009778.1\|WP_004388509.1\|1165486_1166554_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|235471
NC_009778.1\|WP_012124364.1\|1187683_1188904_+\|DUF3396-domain-containing-protein	unknown	unknown	gnl\|CDD\|371775
NC_009778.1\|WP_012124348.1\|1166550_1167633_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NC_009778.1\|WP_012124358.1\|1178105_1179278_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	unknown	unknown	gnl\|CDD\|183117
NC_009778.1\|WP_004385872.1\|1168939_1169839_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_009778.1\|WP_041460459.1\|1172069_1173365_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004385325.1\|1179365_1179839_+\|DNA-gyrase-inhibitor-SbmC	gnl\|CDD\|182195	PRK10016, PRK10016, DNA gyrase inhibitor SbmC.	1.67063e-100
NC_009778.1\|WP_041460461.1\|1180039_1181098_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	4.55424e-39
NC_009778.1\|WP_029464225.1\|1181984_1183457_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	gnl\|CDD\|182293	PRK10189, PRK10189, EmmdR/YeeO family multidrug/toxin efflux MATE transporter.	0
NC_009778.1\|WP_012124357.1\|1176716_1177868_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	5.39021e-28
NC_009778.1\|WP_004385872.1\|1168939_1169839_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.41334e-160
NC_009778.1\|WP_007794764.1\|1173553_1174915_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.31158e-44
NC_009778.1\|WP_015386526.1\|1175211_1176639_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_009778.1\|WP_012124349.1\|1167629_1168934_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_009778.1\|WP_012124363.1\|1186370_1187672_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	1.81479e-10
NC_009778.1\|WP_004385874.1\|1170215_1171040_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.44679e-76
NC_009778.1\|WP_004385327.1\|1181266_1181605_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	2.72201e-58
NC_009778.1\|WP_012124352.1\|1171023_1171803_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|183101	PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional.	1.87809e-74
NC_009778.1\|WP_012124362.1\|1183848_1186371_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	6.82837e-79
NC_009778.1\|WP_004388509.1\|1165486_1166554_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|235471	PRK05446, PRK05446, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB.	0
NC_009778.1\|WP_012124364.1\|1187683_1188904_+\|DUF3396-domain-containing-protein	gnl\|CDD\|371775	pfam11876, DUF3396, Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.	1.47252e-87
NC_009778.1\|WP_012124348.1\|1166550_1167633_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NC_009778.1\|WP_012124358.1\|1178105_1179278_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	gnl\|CDD\|183117	PRK11397, dacD, serine-type D-Ala-D-Ala carboxypeptidase DacD.	0
NC_009778.1\|WP_041460459.1\|1172069_1173365_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0

>NC_009778.1|WP_007794764.1|1173553_1174915_+|APC-family-permease
MSLNATPKTSRVELRKTLTLIPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALVAILFTALSYGKLVKRFPSAGSAYTYAQKAINPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPEIPSWIFVVLLVAFMTVFNMRTLKGVANFNTIIVVLQVVLIAVILGMVIYGVAHGEGAGTLTSSRPFWSENAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFIQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTVTVLASGMAAHAGVARLMYVMGRDGVFPNRFFGYVHPKWRTPALNVVLVGAIALMAINFDLVMATALINFGALVAFTFVNLSVISQFWIREGRNKTLKDHFTYLLLPVCGALTVGALWLNLEESSMVLGLIWAGIGVVYLACVTRSFRNPVPQYREDIA
>NC_009778.1|WP_097566144.1|1173501_1173564_+|membrane-protein-YoeI
MGQFFAYAAMFTVKENNYVA
>NC_009778.1|WP_041460459.1|1172069_1173365_+|4-aminobutyrate--2-oxoglutarate-transaminase
MQSNQQWQARREEAVPQGVGNALPVFVARAKNAEIWDVEGKRYIDFASGIAVLNTGHNHPAVIEAVKAQLDNFTHPCFQVTPYGNYIELAERLNRLAPISEPCQTLFLSTGAEAVENAIKVARIATGRSAVIAFRGAFHGRTLLGMALTGKVQPYKKGYGPFPAGIYHAPYPAAYLGVSDTQALASLAGIFAADVAPEEVAAIIIEPVQGEGGFYAASAEFMQQLRALCDKHGIVLIVDEIQSGFCRTGKTFAIEHSGVEPDLITMAKSLAGGFPLSALVGKKALFDKALPGGLGGTYAGSPVSIAAALAVTDLIEQEQLNARAIAQGELLMSGLRELAQKYDCIGDVRGVGAMVAMELVHERDSHRPDKELTQQLVQEAGRQGLILLTCGVRANVIRFLIPLTAEKEIVTEGLNVLSSCLKVVQNTRPAK
>NC_009778.1|WP_012124352.1|1171023_1171803_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MTVNTPPLIGVLMCQSNQDEQLILTVEKLYLAPLYHSGAVAIPLPHHLADDPLYLAAALKSLSGIFLPGSPCNIEPHHYGEEAQETSNDPGRDKLALMLVRHALNTGLPLLGSCRGVHEMVVATGGKLWRQLHNVEGLREHEVNPNGSPEAKFAPVHGLEITPGGWLDSWVAPGETVRVNTLHQQGIREVGPGVFIEARADDGLIEAISIPEHPFAFGVQWHPEWGALHDEPLSKQIFDAFVAACRVWQADHQALTPLA
>NC_009778.1|WP_004385874.1|1170215_1171040_+|SDR-family-oxidoreductase
MKKVAIVGLGWLGMPLALALNARGWQVAGSKTTADGVEAARMCGIESYQLELLPEMVCDSDDLEALFNADALVVTLPARRTGGNGEYYLQAVQQVVDSALAHQIPRIIFTSSTSVYGEAEGICKETTPANPVTESGRVLRELEQWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTGPNGGHGVNLVHLEDVIGAITLLLQSPKGGHIYNLCAPQHPTRAEFYPVMARQLGLEPPRFSESPAGTKGKLIDGNRICHELGFEYLYPDPLVMPME
>NC_009778.1|WP_071601073.1|1169984_1170035_-|his-operon-leader-peptide
MTRVQFNNHHHHHHPD
>NC_009778.1|WP_004385872.1|1168939_1169839_-|ATP-phosphoribosyltransferase
MTDNNRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIALAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLTRRAQGDDPRYYTLRRLDFGGCRLSLATPVDDVWEGPESLNNKRIATSYPHLLKRYLDQKGVQFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMPAVKQQLIDKLLTRIQGVIQARESKYIMLHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_009778.1|WP_012124349.1|1167629_1168934_-|histidinol-dehydrogenase
MTFTTIVDWNACSAQQQRELLMRPAISASESITRTVAEILDNVKARGDAALREYSVKFDKTDVAALKVTAEAIDAAAARLDDNVKQAMAVAVANIEKFHRAQQLAPVDIETLPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKRVVLCSPPPIADEILYAAKLCGVQEVFQAGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAAMAQAVADATARQLEALPRAETARQALSASRIIVARDLAQCVAISNQYGPEHLIIQTRNARELVDDITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATSSSLGLADFQKRMTVQELTPAGFSALAETIETLAAAEQLTAHKNAVTLRVAALKEQA
>NC_009778.1|WP_012124348.1|1166550_1167633_-|histidinol-phosphate-transaminase
MSIEELARENVRTLTPYQSARRLGGNGDVWLNANEYPLPVEFQLTAQTLNRYPECQPKRVIERYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGRDAVLYCPPTYGMYSVSAETSGVECRTVQATDGWQLDLPAIAEQLDGVKVIFVCSPNNPTGQLINPQDLRTLLEMARGKAIVVADEAYIEFCPQATLAGWLGEYPHLVVLRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPEGITAMRERVAQVLANRDVLIAGLRETPCVEAVFDSETNYVLARITASSAVFKSLWDQGIILRDQNRQPTLSGCLRITVGTREECQRVIDALRDQPGLAATERV
>NC_009778.1|WP_004388509.1|1165486_1166554_-|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB
MSQKYLFIDRDGTLIAEPPEDFQVDRFDKLAFEPDAVPVLLQLQKAGFKLVMITNQDGLGTASLPQADFDGPHNLMMQIFTSQGVLFEDVLICPHFPTDNCDCRKPKTKLVERYLEPGVMDAANSYVIGDRATDVELAENMGITGLRYNRADLNWAAIGEHLTKRDRYAHVERSTRETQIDVKVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEIGVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFVLPMDECLARCALDISGRPHLEYKAEFNYQRVGDLSTEMVEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGETLPSSKGVL
>NC_009778.1|WP_015386526.1|1175211_1176639_-|exodeoxyribonuclease-I
MSDSAAQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCPVLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARWLAHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIVG
>NC_009778.1|WP_012124357.1|1176716_1177868_-|acyltransferase
MAQGKSWSPELEGLRGLASLWVLLGHICLLVQCRIPLLYDPGMGVDLFILLSGFLMAKNYMERRDIEPWTSGHTMRNFWLRRFFRIAPLYYFLLLLALIFGAAFGEWRDVIAQAWPSTQTESQRYADTSAGNILAHISFVFGAIPYYSFRTVLPDWSIGLEMQFYVLFPFIMLLVMRWGFFAAAFAVMVACFAARWAFPGYFEAFPMPSMILIKLPLFVAGMLIAAAVRDSRRQLLLLAFLAPVLAWQMHIAVTPVRLIAQCVMIAGLGALLWQAQAGSLLHQAMRLPRWLLTRRISQFLGDVSYSVYLLHLMIVIPVIGLLVEHSAFEQYASPVRLLIAAAISLPVTYALATVLFHRVEKPGIALGKRLITRKPVQPEQVMP
>NC_009778.1|WP_012124358.1|1178105_1179278_+|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD
MLLKFRPMIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKDEQVAVGTDRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANERVGEIELYNGDTIIARMPLVTLEKVKKGGVFSRFGDWLHLTL
>NC_009778.1|WP_004385325.1|1179365_1179839_+|DNA-gyrase-inhibitor-SbmC
MDYTIEHVLTRKIAGFHLVGPWEKTVPQGFEQLSLWVDNFHIQPQAWLAVYYDNPQQVAPEKLRADTVVEVPADFTLPENSVGVILTDLPGGQYAVARARVENNDFGTPWLAFFTRLHQDVRYQMAARPCFEIYLNDGKRDGYWDIDMYIPVQTSGE
>NC_009778.1|WP_041460461.1|1180039_1181098_+|FUSC-family-protein
MRADKSLSSFEIRLYQHYRIVHGVRIALAFILTFLLVRMLNVPEGTWPLITLVVVMGPISFWGNVVPRAFERIGGTILGAALGLVALQLEGWSLPLMLLWCALAMFLCGFLALGKRPYQALLIGITLSVVVGAPQGDMLVALWRGGDVIFGSLLAMLFTSLWPQRAFIHWRIQMANFVGDFAKIYHAGLSPNLVERPRLDKPLQNILGSVVKLRAFITPASKETHIQRAIFEAIQTTSRNMVCTLEMQNNAWWASRESHFLMINARTLRDSQQMTENTLAAIAQALREGNPSPVMANREKLAEIAQELRALMSEGQQGALVETPIHGYVWLSMELAQQLERLSQLICRALRK
>NC_009778.1|WP_004385327.1|1181266_1181605_+|DUF496-family-protein
MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPKGEE
>NC_009778.1|WP_029464225.1|1181984_1183457_+|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter
MSVTTTVRQAIARTPWYKKRKSYRVLFWREITPLAVPILLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVVLSFFAAVDLGTTVVVAFSLGKRDRKRARAAARQSLVLMTIVSILLAALVHVTGEYIIDVVAGEATPQVKELALIYLQLTAWSYPAAAIALIGSGALRGAGNTKIPLLINGGMNILNIVISGFLIYGLFSWHGLGFIGAGLGLTISRYIGAIAILYVLMIGFNPALRISLKSYFSPLKLNILWEVLGIGLPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITGKRLGKGQIGQAERELRHVFWLSTIMLTAIAWVSAPFAGLFASFYTHEDDVKEVVKVLLWLNAAFMPIWAASWVLPAGLKGARDARFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVGVWLGMFLDWAVRGVFFYWRMVSGKWLQKYPRPPKRPVVLDTPAPPGQPKAM
>NC_009778.1|WP_012124362.1|1183848_1186371_+|type-VI-secretion-system-tip-protein-VgrG
MTISDKGSSVSSRYTLEIAHSRVRPDVLNFHGREALSEPYQWRIEFTAPQSDLAPEDVLLKYATLKMLSGRVVYGVITRFEWLGTSADQTHYAVTLASRLALLSLTRRCAVYQNLSVPELLEQILRAHGLEGPDFDFRLERTYPQRELITQWRETDLAFIQRILSEVGIWFRTEMNAVTQLETLIVGDSQLNCVFGVSVPYREPSGLYDGAQDAVWDVRCWQNTVTGVVRTRDYNYRTADTPMDSAVMVRSEAITTGEHYRYGAPFLEAGDDATSEPETESGAFYARIHHERELNSATRLHLFSNVSHLTPGQVLETPESPVAALKEGMLITLATYRAARDTRLHVSLWGIPYSERVNYRPVEIIRPEIQGTLPARIESREPHDTYAWLDDTGRYRVKLDFSREDAEPGYHYLWVRQAKPYAGDAFGWHTPLLDGTEVSIAFDDGNIDRPYIAHAFHDAEHADIVTRDNRSQNILRTAARNELRMEDLRGQEHVALTTPYGASSLNQGHITDEQSQQRGAGFELRTDEYGVIRVAKGLFVTADGQTKAAGEVLEREAAQREIEICLNQIQQLADAAAQAQALEADIASQIAMFNARLKPLNQMVHFHGPQGTAFTSGEHLQMTASKNVVMNAGGSLSMGAMGNMTLNAGEKIGLFARTGKLNVISGEGPVQFQAQNGTMSLSAQQKISLVSTGDMLFAGKKKVTLIGGGSYLKIEQGKIEYGTTATYLRKVERTMVGAPKNMPLKVQRVGTAYIYSAIYQLQDKQGNILINTPYRLTTPSGQTIAGYSDTEGRSVPVYTRQPEDVELHILRKTASPEESMWFVGETNVYQLETELRENPS
>NC_009778.1|WP_012124363.1|1186370_1187672_+|VRR-NUC-domain-containing-protein
MDMPALPDTPTTAPDTPTGEKNQPWDCTTTGVEMVEKQSRLPTNENRQYLHLKVEYAMRFPQLAAKICREGKTYQMSLKQLMMSGLIRADEIARNYYWYYKAEVPFDMRTTPPRPFLSSTLKQDDGARRRHTTNPFPVPGKGIYRRPDVIIVKDKQDRWPGLAGPDHDDPPGMHGDNLARLVEVKFPGDTLFEDQYDEYMKIVGKDRNRMTILEIHDCRPQEQQWVDQVVNVTMKAWQTSGAKYWPLFLYPPIFMPRPPSTPVAARIEPWTYAGQAVVSLSDGAIRGVAEGWSSLSKETQQLLNSTAGWLNDSGEWIYRQGSEVWIWTSKTGKAVKSWSNVRIKAAWAEIQYATDMTLDLLKQVDWVQILTNVAKTVGVILVAICVGALVVTLGIPEAIISAFLLIIRLAITAWETLVTILGGGAGAAALSAG
>NC_009778.1|WP_012124364.1|1187683_1188904_+|DUF3396-domain-containing-protein
MVLRDVELNYLEKWLPEASVKYKDGSPAVNLGLIITVFFKDGHTPDVRRRMVECVDRFYTEFKPYLKKHLTQNWVGITEKNYARKRQEIIDSTPEEIFSWYMGSAEKDFLAPDYSILIMGKRIFHNDNDRSVIKLTFPLSLLKEPDGKAQYEGWLLWLCNTFAVESGYAGLSFILPYSRERMFPYEYALAQRFSGVMVDSLGTLEGGEAVEGLKGACWYTILGTPWLEKLGGAEQLTHRLVKTPEITLLPYSNGVILKAGELPPPLGDMKTEGVPPLLIKVNQIIRPVRYDGHNGLHFFSGYENLQFEKASSMAWFARFDEASALLDKAEAETSRAPVRIQCWTDDIAPYAGQWAAIVNGRTEYIRTREGQKMPLYKDKYGKPHRACWTLLKRDDKGSVYALPEDD

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Crispr_ID: NC_009778_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_4

1246351-1246424

Orphan

Consensus_repeat	Method
TGCGCTTCGCTTACCCGCCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_4

>merge|NC_009778|4|1246351-1246424|CRISPRCasFinder
TGCGCTTCGCTTACCCGCCCTACGGGAGAGTGGTTTCTGATTTCAGGCGGATGCGCTTCGCTTACCGGCCCTAC

>NC_009778|4|4|1246351-1246424|CRISPRCasFinder
TGCGCTTCGCTTACCCGCCCTAC	GGGAGAGTGGTTTCTGATTTCAGGCGGA
TGCGCTTCGCTTACCGGCCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012124400.1\|1237619_1238516_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187572
NC_009778.1\|WP_007850993.1\|1246993_1247404_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NC_009778.1\|WP_012124409.1\|1251837_1255188_+\|methyltransferase-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|226428
NC_009778.1\|WP_012124405.1\|1242653_1243259_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009778.1\|WP_012124408.1\|1250328_1251816_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_004386794.1\|1244213_1244447_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NC_009778.1\|WP_007850978.1\|1255257_1256391_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_009778.1\|WP_012124404.1\|1241385_1242297_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_009778.1\|WP_004386798.1\|1246631_1246994_-\|flagella-biosynthesis-regulatory-protein-FliT	unknown	unknown	gnl\|CDD\|182538
NC_009778.1\|WP_012124410.1\|1256387_1257026_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|274656
NC_009778.1\|WP_012124401.1\|1238987_1239569_+\|DUF4142-domain-containing-protein	unknown	unknown	gnl\|CDD\|379301
NC_009778.1\|WP_007776089.1\|1249279_1250116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139237
NC_009778.1\|WP_012124407.1\|1245864_1246278_+\|lipoprotein	unknown	unknown	gnl\|CDD\|182428
NC_009778.1\|WP_004386786.1\|1236680_1237520_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NC_009778.1\|WP_012124402.1\|1239759_1240977_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_009778.1\|WP_032988482.1\|1257319_1258066_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NC_009778.1\|WP_012124406.1\|1243451_1244135_-\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|182162
NC_009778.1\|WP_012124413.1\|1258078_1258822_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NC_009778.1\|WP_032988410.1\|1257063_1257303_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_004386795.1\|1244443_1245661_-\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012124400.1\|1237619_1238516_+\|SDR-family-oxidoreductase	gnl\|CDD\|187572	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7. This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.79836e-109
NC_009778.1\|WP_007850993.1\|1246993_1247404_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	6.31079e-66
NC_009778.1\|WP_012124409.1\|1251837_1255188_+\|methyltransferase-regulatory-domain-containing-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	1.41219e-75
NC_009778.1\|WP_012124405.1\|1242653_1243259_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.77776e-18
NC_009778.1\|WP_007850978.1\|1255257_1256391_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.95945e-140
NC_009778.1\|WP_004386794.1\|1244213_1244447_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	3.65566e-50
NC_009778.1\|WP_012124404.1\|1241385_1242297_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.19189e-78
NC_009778.1\|WP_004386798.1\|1246631_1246994_-\|flagella-biosynthesis-regulatory-protein-FliT	gnl\|CDD\|182538	PRK10548, PRK10548, flagella biosynthesis regulatory protein FliT.	1.08641e-55
NC_009778.1\|WP_012124410.1\|1256387_1257026_+\|acetyltransferase	gnl\|CDD\|274656	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.	4.56363e-57
NC_009778.1\|WP_012124401.1\|1238987_1239569_+\|DUF4142-domain-containing-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	4.98393e-27
NC_009778.1\|WP_007776089.1\|1249279_1250116_+\|hypothetical-protein	gnl\|CDD\|139237	PRK12802, PRK12802, flagellin; Provisional.	2.37264e-72
NC_009778.1\|WP_012124407.1\|1245864_1246278_+\|lipoprotein	gnl\|CDD\|182428	PRK10397, PRK10397, lipoprotein; Provisional.	9.04323e-91
NC_009778.1\|WP_004386786.1\|1236680_1237520_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	2.72955e-41
NC_009778.1\|WP_012124402.1\|1239759_1240977_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.65181e-77
NC_009778.1\|WP_032988482.1\|1257319_1258066_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	8.90297e-75
NC_009778.1\|WP_012124406.1\|1243451_1244135_-\|SOS-response-associated-peptidase	gnl\|CDD\|182162	PRK09951, PRK09951, hypothetical protein; Provisional.	9.30669e-154
NC_009778.1\|WP_012124413.1\|1258078_1258822_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.07718e-74
NC_009778.1\|WP_004386795.1\|1244443_1245661_-\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0

>NC_009778.1|WP_012124407.1|1245864_1246278_+|lipoprotein
MKKIALGLMMLGLSGCVQVENYNEVVKTPPPAGLAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKLMRRDDTLYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTECADFLTKNPLDTPLP
>NC_009778.1|WP_004386795.1|1244443_1245661_-|selenium-metabolism-membrane-protein-YedE/FdhT
MSWHDFKQQYLVRFWAPLPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAENWGYYKLIHLEGTPLTRIDGMMIIGMFGGCFAAALWANNVKLRMPQHRIRIIQAVAGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAIGSWFGARFTLLPLFRIPVKMQKVSAAAPLTQKPDQAKRRFRIGMLVFAGMIGWALLTAMNAPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIFGMAASAIGIFSYVQLGAEPKIMWAGPNAVLGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTVLAYFWDDLAPSLATSWDKINLLNTFGPLGGLLVTYLLLFAALMLVIAQEKRFFRRQKPAATAAAIKEGA
>NC_009778.1|WP_004386794.1|1244213_1244447_-|sulfurtransferase-like-selenium-metabolism-protein-YedF
MNAITPDYRLDMSGEPCPYPAVATLEALPQLKKGEILEVISDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK
>NC_009778.1|WP_012124406.1|1243451_1244135_-|SOS-response-associated-peptidase
MCGRFAQTLSREEYLAALDETTERDIAFDPEPLARYNVAPGTRVLLLSQREDVLHLDPVHWGYAPAWWHKTPLINARVETAATSRMFKPLWQHGRAIVFADGWYEWKREGDKKQPYFIHRADGEPLFFAAIGKAPFEQGDDREGFVIVTAAADKGLIDIHDRRPVALTAEAALAWLSPETSDKRAETLAHDGALGPDAFIWHPVDRAVGNIRNQSPDLLAPVDNPVV
>NC_009778.1|WP_012124405.1|1242653_1243259_+|class-I-SAM-dependent-methyltransferase
MTHPSSQTVAHFYRHHALQWDEIRQARFVEQPWLDAVLEGLQEGGTVLDIGCGSGSPVGVYIDSKGFAITGIDVTPALVALCRERLPRHRWLTGDMRTLSLSARFDALIAWDSFFHLTREDQRAMFAIFQQHAKPGAKLLFNSGPENGEAVGEFLGEALYHASLSPEEYTQLLNAHGFDVLTFRPNDAASGGRTVWLAQAR
>NC_009778.1|WP_012124404.1|1241385_1242297_+|LysR-family-transcriptional-regulator
MTLRNLDDLAVFVHVVECRSFSAAARALHLAPKTVSKQIARLEQALGATLFERNTRNLRITHEGRAIAERAKVALGVLEEMQEVATGASRDLRGIIRLTAPMPFGRKYVAPAIQDFCRLHPGVTFDLRLSDQMQDLYSDDLDLAIRMGELADSRLVALRVADNRRILAASPDYLKAHGQPAHPQDLAQHNCLVFAYPGLQQSIWPLRKGRMEKAVAVGGTLCSDSGDVLHAWCLAGMGISLRETWDIHEELRDGRLIRVLPEWEATPSRISIVRARREPIARRLTVFSDFLLERWRDAPWDAP
>NC_009778.1|WP_012124402.1|1239759_1240977_-|MFS-transporter
MSERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHTTVSQVGMAVTAYALGAVIGAPVLTALATRWPRKRLLLVAMAMFTLGNAVVSVSDALMPMLVARFASGLGHGVFLAVASSVATQLAGQHRAGAAVAVVFGGLTLALAIGVPVGTYLGSLLSWQVIFMGVAGSGAIGFLGLLTLMPAERDDTLTQANAMNGLRAIFNPRLLAGASITVLAYAGSFALYTYISPVLQQVTKVSSGTASLLMLGYGIMAAVGNVWGGRLTDRKGPDAAVMTVLVGLAVVLLAIWLSASSLPLMVLLTGLLGALTYAAVPALQARVIRLSHSHAPHAPAVAAGLNIAGFNGGIALGSLFGGASLEVMGLTSTAWVGAIVVGLGVIWMLWQMRRPAFLITTLHGQMNDTNTM
>NC_009778.1|WP_012124401.1|1238987_1239569_+|DUF4142-domain-containing-protein
MQKTKTLKGLLVASAVAAMFSTAGVQAETAKSTTQNEAAGQTTSGAKLSAGDEKALKDMAQADINEVAAAKIALEKAQNSDVKAFAQKMVDDHSAALSKVQAVAQQKGVTLPTEPDAKHKAMAAKLEKESGDAFDKQYMENAGTKDHKMVLSKLQSDAKKIKDADVKALADAHTPVVEEHLKSAEQMSKHSGK
>NC_009778.1|WP_012124400.1|1237619_1238516_+|SDR-family-oxidoreductase
MRIFVTGATGFIGSRVVSALLARGHQVTGLVRSEEAARQLVDKGVTAQRGTLEDPLSWVAGIDQCDAVIHTAFDHDFTRFVENCEKDRRVISAIGFVLQGSQRPLLITSGTGMGDDGSGQPALEQNFNPAHPNPRVASELEGSQLLESGIDVRVVRLPQVHNTERQGLISYYISLAREKGAAAYIGEGKNAWCAAHVDDVAGLYVKVLEQGERGKRYHAVAEESIASWLIAQTVATGLDIPAVSLKSEQAAEHFGWFAAFTMMDMRASGAWTRQQLDWQPKGPGLIDDLRSMSFSGKP
>NC_009778.1|WP_004386786.1|1236680_1237520_-|helix-turn-helix-domain-containing-protein
MTLLSENPLGDFLRARRLGLDPASFGFLPGRRRTPGLRREEVAQLANISPTWYTWLEQGRGGAPSREVLNRIAAGLRLTSPERDHLFILAFGHPPESRVSPSGSITPRLQRVLESLTIPAIIKTVIWDVVAWNYPATVVLKDYALLPPARRNILRLLFTDPEALEMQHDREGVARLIVNAFRADAARLGASEEIARLVEELSAQSADFARLWRNNDVAGHGEGLKMLHHPQIGTIALEFCTFSVEGRPDLSMMLFNPATEESRMKIERWITQNRAQREG
>NC_009778.1|WP_004386798.1|1246631_1246994_-|flagella-biosynthesis-regulatory-protein-FliT
MNDFISSLNNWQALYALSNTMLSLANSGQWDELIEQEVKYVTLVEAIARNPIEPDNSVFQEKARELLTKVLANEAALKIKLQARMEELRVLIEQNGNQKSLVSAYGKLSGNVLMPNDFNQ
>NC_009778.1|WP_007850993.1|1246993_1247404_-|flagellar-export-chaperone-FliS
MYNSSGVQAYQQVGLESAVMSASPHQLVVMLFDGALSALVRARLFIEQGDTVAKGQALTKAINIIDNGLKAGLNMDIGGDLPRNLASLYEYMVRRLLHANLRNDVDAINEVETLMTNIADAWKQIGPGTTLAQETF
>NC_009778.1|WP_007776089.1|1249279_1250116_+|hypothetical-protein
MSVINTNLLSLTTQTNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRMTSQVKGMTQAARNANDGISLVQTAEGNLNEINTNLQRIRELAVQAANDTNGSTDLTSINTEITQRLSEIDRIAGGANFNGKKLLDGSVSTALKIQVGAGTSSNDTISIDSNALINATSGTLDSALSTSIADNSSAQAVISAADAAIAKIDTARSNMGAIQNRFESTINNLNNSINNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQSMLSLLR
>NC_009778.1|WP_012124408.1|1250328_1251816_+|hypothetical-protein
MAGLTGKTPSRVAINDELKPMNQFAQCRAMHQYYRDIFTRTIYLPEADVMPSHLVAEVLHFWSTDYAAMEPAIMAAPMPPELDAEKALAIKHLLCAATLANQAFDSKKQGHQIAAVEGFGDRVTAHVVEALKRDDAVNLVVAAIQLLFRVGEIDGAVFLISNHLSRLSNSAPVLKILLLICLMEEDYNQAQVVIQALTSDSSLIEEESLVLLMIVCGIYKLGGCPDSFIDFRPLNEPLPLPDYSRYSWHIPKAATGNTTVLISCDPNYFFDHAQALVASVYDTNGTALDVHLHIYNCDARCEARVREMQAAFPGLNFSLSSEVIAPVRGINVHYASRRFVFLRYALEQFDAPVMLLDADCLVRKPWADVHTRLDDADLILTCSDGAPLWERVLGAFIYARPTQANFRYLDIVARFIDRNLAAENNEWFLDQVALSFALDTLPAVEQMQVRREEASRLVCINHTPDAFAWMVTTVKNGKGPFSDYKTSLMAKYLSA
>NC_009778.1|WP_012124409.1|1251837_1255188_+|methyltransferase-regulatory-domain-containing-protein
MNDVKTLYPEHRISPLALHASAALNHVAAASPAFARVLEIGCGAGETLIAHARAWPNSIALGIDLDEARIGEGQQQIQASGLTNIELFAAGLGDLLAVSPGEFDYIIIHGRFSHTDDDTRDALLRWCRQHLSAQGIIAYHATLAENDDDATLRDALAFHSQRAATHNEKLASARAMLGYLAMTLPDGALKTRVLAAEALDDASLMQRYLADDTAARNYTDFARDMQALDLACIGDALPQTDLAACYGERQQQLHAMIAGPRDRHSARQYLDFAVNRRERFTMLCAKDAAEPSFVPDLAMLESLHWAGNFTRVFTINGKVVSGHISQSGVPVRTENPVTLQILDVLAGAWPMSLSVEQLIFNCRLPERPGDDTRKQVLESLRDLFLNNLDGLFWSAVPGPYNLAENDVLAPVLPLPVTDEESRVLNLWGEAVTVTPAHWRWLRDGMRTTDDDAWASFTSLRIRGVLQGTPLAWKNVIQPFLRTGNVAWLKQCLNTLLLLSVSERRGGLLQSEANMDADSQTDSSEMDAVYAEANRLIVKGMAKEAREYTRELLAQDPQNMHILRCYSRTCVLTGAWDEALDALCRLMGHYFSSLDIYYDLATALQKTLDHFNAKKVVQGLLRLDEKNAGFWNSLGTLYHARGDMTLAEKCAREAFRFQPRNPRYLAMMGVVLSDNQKLDEARYFLEKSLELSPEDFDCFTSLLFVLTHDNRVSAQELLAKHRDYGERVTAYAERLALNLPLNNEKDPHRKLRVGFVSGDLRTHPVSNFLLPFWESFDRTQFELVGYNAAPMHDEVTDHLRAGAVLWRDAYQLSDRELARQINDDGVDILIDLSGHTTWTRLPMFALRPAPLQMTWIGYPGTTGVPAMDYRLLSSTLASPPGLAEQFTEQILWVPMRKIFEPHPQSPDVNPLPALRNGHLTFASFNRPKKINDEVLELWAKILVREPSAKLLMGFMADDEMIAMMTRRLTHFGARPEQLIFRTRTGLIEYLEYHHHIDILLDAFPYTGGTTTNHGAWMGVPTLTLCGETMAGRQGVETMNGYGLPEFVANDKADYVEKALSWQGRFEELNAIRLSMRSRIPTNNADGFRVAETFEKGLREAWKIYCTGEAPRSFFVEE
>NC_009778.1|WP_007850978.1|1255257_1256391_+|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MQNLFVTSPLLPPLEEFIPYLEQIWENKYLTNGGPFHQELETRLAEYLGVEHLCLFSNGTLALLTALQALRITGEVITTPYSFVATSHSLLWNGLTPVFADIDPVTCNIDPNKIEQLITPATSAILPVHCYGLPCDVDKIQSIADAWGLKVIYDAAHAFGVKKNHQSILNCGDLSILSFHATKVFNTFEGGAIICPDARMKQRIDYLKNFGFAGETTVVAPGINAKMNEVQAAFGLVQLGHIDNALANRAAIHDRYCEWLADIPGIETFSAPDDVEWNHSYFPIRVNDDFPVSRDALYEALKAENIYSRRYFYPLISAFSMYRHLPSAQPQHLPIATGIAERILCLPIFPDLTEEDQRRVVDAIRAQAALGLAEKVA
>NC_009778.1|WP_012124410.1|1256387_1257026_+|acetyltransferase
MKLGIYGAGGLGREVLMLARAINQCTSRWSEIFFIDDVTDAQEVYGAAVVRFDARPAECEVAIAIGEPALRQRLAQKLAGNAPLATLIHPNVDVPSQSEIRAGAILCDGAFISCGVTIGKNVLVLPRACVGHDCVIGENSVVSGMVALAGHCVVGERVFIGMNSCVKEQTRIGDDAIVGMGSAVFSDVADATIVLGNPARAMRQNTEGKVFK
>NC_009778.1|WP_032988410.1|1257063_1257303_+|hypothetical-protein
MTNLVKYNTIFMETFEVPEEMLADYKYQDTPSWDSVGHMTMIAALEETFDIMMDTEDIIDFTSWQKGKEILQKYDVEIA
>NC_009778.1|WP_032988482.1|1257319_1258066_+|SDR-family-oxidoreductase
MLLVGKNAVITGCLQGIGNATMVAYARHGANIFACVQQEDAAFSAQIAELSSQYGVTITPVCFDLLDDASIKQAAMAIQKAKVPVDILVNVAGVTLDALFPMVTMEQLHKTFAINFFSQMVFTQYLTRLMLRNKRGSIINISSISGLDGNSGQLAYAASKAAMVAATKTLSIELAPQGIRVNAVAPGVIATPMTENLASDVVESKLAQSALRRTGRADEVADTLVWLGSDAASFVTGQVLRVDGGIGY
>NC_009778.1|WP_012124413.1|1258078_1258822_+|SDR-family-oxidoreductase
MLLKEKNVIITGCARGIGRAMVEAFAAEGACIYAHARSETPEFLADMAALADRYQVEIWPLCFDLTDNDAMKGAVKRLMSDKRPLHALVNNAGVIWNALFQMTTMQTLREQFEVNFFSLFSLTQMVSKLMTRQRFGSIVNIASTAAEDGNSGKAAYGAAKAAVVALTRTIATELGEQGIRANCIAPGMTETDMLSAMPDYVIEETRNSTDLRRLGAPQEIAAAAVWLASDLSSYVTGQTIRVDGGMR

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Crispr_ID: NC_009778_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_5

2515511-2515595

Orphan

Consensus_repeat	Method
CCTCATCACCGTAGGGCGGGTAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_5

>merge|NC_009778|5|2515511-2515595|CRISPRCasFinder
CCTCATCACCGTAGGGCGGGTAAGCGCCAGCGCACCCGCCATGCAAAACCGGACATTAGCCTCATCACCGTAGAGCGGGTAAGCG

>NC_009778|5|5|2515511-2515595|CRISPRCasFinder
CCTCATCACCGTAGGGCGGGTAAGCG	CCAGCGCACCCGCCATGCAAAACCGGACATTAG
CCTCATCACCGTAGAGCGGGTAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012125298.1\|2514421_2515450_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NC_009778.1\|WP_012125301.1\|2519518_2520427_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NC_009778.1\|WP_012125295.1\|2507944_2509675_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_009778.1\|WP_004387501.1\|2515667_2516375_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_009778.1\|WP_012125294.1\|2506956_2507958_+\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|235136
NC_009778.1\|WP_007848473.1\|2523153_2523390_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125296.1\|2509671_2510793_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_009778.1\|WP_004387497.1\|2512422_2513184_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NC_009778.1\|WP_012125292.1\|2504615_2506040_-\|ATP-dependent-RNA-helicase-RhlE	unknown	unknown	gnl\|CDD\|236722
NC_009778.1\|WP_004386467.1\|2520651_2522673_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_009778.1\|WP_004387498.1\|2513180_2514422_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NC_009778.1\|WP_004386468.1\|2523563_2524271_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274567
NC_009778.1\|WP_004387503.1\|2516923_2517169_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NC_009778.1\|WP_004387505.1\|2517650_2518163_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NC_009778.1\|WP_004387496.1\|2511870_2512287_-\|YbhQ-family-protein	unknown	unknown	gnl\|CDD\|314103
NC_009778.1\|WP_004387506.1\|2518184_2519174_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_009778.1\|WP_012125297.1\|2510802_2511909_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_009778.1\|WP_004387504.1\|2517161_2517647_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_009778.1\|WP_012125293.1\|2506265_2506964_+\|transcriptional-regulator-CecR	unknown	unknown	gnl\|CDD\|236928
NC_009778.1\|WP_007896449.1\|2516469_2516922_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012125298.1\|2514421_2515450_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	1.7304e-54
NC_009778.1\|WP_012125301.1\|2519518_2520427_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.66361e-125
NC_009778.1\|WP_012125295.1\|2507944_2509675_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.09107e-97
NC_009778.1\|WP_004387501.1\|2515667_2516375_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	4.53983e-77
NC_009778.1\|WP_012125294.1\|2506956_2507958_+\|secretion-protein-HlyD	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	0
NC_009778.1\|WP_004386468.1\|2523563_2524271_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.05611e-68
NC_009778.1\|WP_012125296.1\|2509671_2510793_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	4.66688e-28
NC_009778.1\|WP_004387497.1\|2512422_2513184_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	8.08801e-89
NC_009778.1\|WP_012125292.1\|2504615_2506040_-\|ATP-dependent-RNA-helicase-RhlE	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NC_009778.1\|WP_004386467.1\|2520651_2522673_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_009778.1\|WP_004387498.1\|2513180_2514422_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NC_009778.1\|WP_004387503.1\|2516923_2517169_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	1.85359e-49
NC_009778.1\|WP_004387505.1\|2517650_2518163_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.26853e-96
NC_009778.1\|WP_004387496.1\|2511870_2512287_-\|YbhQ-family-protein	gnl\|CDD\|314103	pfam11076, YbhQ, Putative inner membrane protein YbhQ. This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.	9.20391e-69
NC_009778.1\|WP_004387506.1\|2518184_2519174_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NC_009778.1\|WP_012125297.1\|2510802_2511909_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.91907e-36
NC_009778.1\|WP_004387504.1\|2517161_2517647_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	8.07064e-104
NC_009778.1\|WP_012125293.1\|2506265_2506964_+\|transcriptional-regulator-CecR	gnl\|CDD\|236928	PRK11552, PRK11552, putative DNA-binding transcriptional regulator; Provisional.	6.21428e-133
NC_009778.1\|WP_007896449.1\|2516469_2516922_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	1.04265e-115

>NC_009778.1|WP_012125298.1|2514421_2515450_+|UPF0104-family-protein
MAKSHPKWRIAKKILTWVFFIAVVVLIVMYAQKVDWEEVWKVIKNYDRTALLISVALVILSYLLYGCYDLLGRAYCGHKLAKRQVMLVSFVCYAFNLTLSTWVGGVGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGVIFTFGVVKLPAHWYIDEMTLRIIGIALLAVIAVYMWFCAFAKRRHVTIKGQKLVLPSWKFAIAQMVISSANWMAMGAIIWLLLGQEINYFFVLGVLLVSSIAGVIIHIPAGIGVLEAVFIALLGGEHVSHGAIIAALLAYRMLYFFAPLLLAIVIYLVLESRAKKLRAKNEQKLAKAQGADSVREENEEPSLSLAKEK
>NC_009778.1|WP_004387498.1|2513180_2514422_+|cardiolipin-synthase-ClsB
MKTTWRDGNHIELLENGDEFYPAVFDAIDKARSKVILETFIWFDDNVGRQLHDVILNAAQRGVSIEVLLDGYGSPDLSDEFVGTLTSAGVMFRYYDPRPRTMGMRTNVFRRMHRKIVVIDGEVAFVGGINYSAEHMSDYGPEAKQDYAVRVEGPVVQDIYHFVLSNLGEERVSRWWQRHYQQAVENTTPGEAQALFVWRDNNDHRDDIERHYLKMLANAKKEVIIANAYFFPGYRLLHAMRNAARRGVKVKLIVQGEPDMPIVKVGARLLYNYLVKGGVEVYEYLRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDTQFNQTLRDNLTRLIREDCKQVDESMMPKRTWWNLAKSVIVFHFLRHFPAMVGWLPAHTPKLAQVPPPVQPEIETQDRVETENPGVKP
>NC_009778.1|WP_004387497.1|2512422_2513184_+|endonuclease/exonuclease/phosphatase-family-protein
MADNTQRFSFNVLTINTHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTTHYEFLADTMWSDYAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVPGTEKRGVLHCRITPPGFPKAIHVICVHLGLKEAHRQAQLTMLAELVNSLPEGEPVVVAGDFNDWRQQANRILRNEAGLDEVFTRAHGRPARTFPVSFPLLRLDRIYVKNASASAPTALPLRNWRHLSDHAPLAVEIHL
>NC_009778.1|WP_004387496.1|2511870_2512287_-|YbhQ-family-protein
MKWQQYIRVVTGLSCWQIMLHLAVVALLVMGWMSGSLVKVGLVLCALYALTVVLMLAFQRHHDGLWREVGDFLEELTTTWYFGAALIALWLLSRVLHNNLLLALAGVVILAGPALLSLLAKERKRDSANFSSKHGIRR
>NC_009778.1|WP_012125297.1|2510802_2511909_+|ABC-transporter-permease
MWHRLWTLIRKELQSLLREPQTRAILILPVVLQVLLFPFAATLEVTNATITIYNQDNGAHAVELTQRFARASAFSHVTLLNSEQAIRPTIDVQKALLAINFPPDFSRKLARGEPAPLQILLDGRNSNSAQIAANYLQQIVKDYQQELLAGRAKPNNSELIVRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFIGKAVPALIVATFQATIVLAIGIWGYQIPFAGSLALFYFTMVIYGLSLVGFGLLISALCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKAIYLKDASLDIIWHSVWPLIVITATTGLAAYAMFRRKIG
>NC_009778.1|WP_012125296.1|2509671_2510793_+|ABC-transporter-permease
MMKLRRVRALCVKETRQILRDPSSWLIAVVIPLLLLFIFGYGINLDSSRLHVGVLLEQRSEEALDFTHAITASPFIAPTVSDNRQHLIELMQAGKIRGLVVIPVDFAARMARPGDSAPIQVITDGSEPNTANFVRGYMEGIWQLWQAERAEDRGETFEPLIDVQLRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEVTRGELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLALFFISSLFLLSTLGMGLLISTLTRNQFNAAQVALNAAFLPSVMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGTLPGVLLVNVLFLLASAVMFIGLTWVNTRRRLD
>NC_009778.1|WP_012125295.1|2507944_2509675_+|ABC-transporter-ATP-binding-protein
MATANDCIVLDGLVKRFPGLEKPALAPLSVTIRAGSVTGLVGPDGAGKTTLMRILAGLMRQDDGRVRVLGLNPIAEENVLHAVLGYMPQKFGLYEDLTVQENLNLYADLRSVTGAVREQTFARLLEFTALGPFTGRLAGKLSGGMKQKLGLACTLVGQPKVLLLDEPGVGVDPISRRELWEMVHELAGDGMLILWSTSYLDEAEQCREVLLMNEGELLYQGAPQALTEQMAGRSLLLRPDNGDNRALLREVMQRPDVGDATIQGAAVRVILKEGSGADALRALPGATLRETAPRFEDAFIDLAGGTALRESPLGAILHDIPGSRDDVVIEARELTKTFGDFTATDHVNFTVRRGEIFGLLGPNGAGKSTTFKMMCGLLKPSDGQALVLGLDLKTDSGKARQRLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQQEKMARMSEAFGLKSIASQPTDALPLGFKQRLALACALMHEPDILFLDEPTSGVDPLTRREFWRHINSMPEKGVTVMVTTHFMDEAEYCDRIGLVYHGKLIASGTPDDLKRQAAREANDEPTMEEAFIRLIEAWDKEHSQ
>NC_009778.1|WP_012125294.1|2506956_2507958_+|secretion-protein-HlyD
MNKKRVALLALVVVIIVAAIAGWRWYAARHTPLTLYGNVDIRTVNLSFRVSGRLASLAVDEGDAVRAGQPLGDLDPTPQQNALRQAQANVAAARAKYDLTVAGFRDEEIAQAAAAVHQAQAAYDYAQNFYQRQQGLWRTKVISANDLENARSARDQTQAQLKSAQDKLSQYRAGNRPQEIVQAQAALEQAQAELAQAQLNAQDTRLVSPSDGTILTRAVEPGSMLNAGSTVFTLSLTRPVWIRAYIDEVNLGRAVPGSNILIYTDGRPDKPYHGQIGFVSPTAEFTPKTVETEDLRTDLVYRLRIVVNDADDALRQGMPVTLRFQNEAADGNR
>NC_009778.1|WP_012125293.1|2506265_2506964_+|transcriptional-regulator-CecR
MDLIDMSLSVTPPTSRGEQAKEKLISAAINQFGEYGLHATTRDIAAAAGQNIAAIPYYFGSKEDLYMASAQWIADFIRTHFQPHADAAEALLRKPEPPPAAMRALIDDACRQMIQLMTADETLSVSKFISREQLSPSPAYQLIHEQVIAPLHHHFTRLIARLTGADPEATETVLHTHALIGEILAFRLGRETILLRAGWRGFDDDKAAQIHRVVTLHIDWILAGLSGSLSDE
>NC_009778.1|WP_012125292.1|2504615_2506040_-|ATP-dependent-RNA-helicase-RhlE
MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMAIPGYEPDPSIPAEPIVNGRQSRGGRGGQGGGGRGQGQPRRQNGEGNRSSGERSRPAGERGRRQDGEGNRPSGERSRRPAGEGNRPAGNKPRTRRAPRKAAGD
>NC_009778.1|WP_004387501.1|2515667_2516375_-|Bax-inhibitor-1/YccA-family-protein
MDRFPRSNESIVQPRAGLQTFMAQVYGWMTCGLLLTAFVAWYSANNENLMMYIFSSRFVFFGLIIAQLALVFVLSGLVHKLSPAVATALFMLYSALTGLTLSSIFLVYTYASIASTFVVTAGMFGVMSLYGYTTKRDLSGWGNILFMALIGLIIASLVNFWLKSTALMWAVTYIGVIVFVGLTAYDTQKLKALGEQIDVNDHGNLRKYSILGALTLYLDFINLFLMLLRIFGNRR
>NC_009778.1|WP_007896449.1|2516469_2516922_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSETRIRVGHENFSVGDEYQWLAQCDEDGAVVTFTGKVRNHNLGDTVSALTLEHYPGMTEKALAEIVAEARERWPLQRVSVIHRVGELWPGDEIVFVGVTGAHRSQAFDAAQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQAAAKRW
>NC_009778.1|WP_004387503.1|2516923_2517169_-|molybdopterin-synthase-sulfur-carrier-subunit
MINVLFFAQVRELIGVDAERVAAEFATVEALREHFAARGGRYALALESGKLLAAVNQTLVPFDHPIADGDEVAFFPPVTGG
>NC_009778.1|WP_004387504.1|2517161_2517647_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINAAGEAHMVDVSGKAETVREARAEAFVEMRPETLSMIVSGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLFADEARSRVRIESLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFQVDAHD
>NC_009778.1|WP_004387505.1|2517650_2518163_-|molybdenum-cofactor-biosynthesis-protein-B
MSQVSAEFVPARVAILTVSSRRGEEDDTSGHFLRDAAHEAGHQVVDKAIVKENRYAIRAEVSRWIASDDVQVVLINGGTGFTAGDQVPEALQPLFDREIAGFGEMFRMLSFEEIGTAMMQSRAVAGMANDTLIFAMPGSTRACRTAWENIIAPQLDARTRPCNFHPHLKK
>NC_009778.1|WP_004387506.1|2518184_2519174_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSVTDVCNFRCTYCLPDGYKPAGVTNKGFLSLDEIRRVTRAFANLGTEKVRLTGGEPSLRRDFCDIIAAVRENPSIRQIAVTTNGYRLARDVAQWREAGLTAVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVKVNTVLMRDVNHHQLDTFLNWIQSRPIQLRFIELMETGEGSDLFRKHHISGATIRDELLKRGWIHQLRSRADGPAQVFCHPDYQGEIGLIMPYEKDFCASCNRLRVSSVGKLHLCLFGDGGVDLRDLLAEEGQQAALMARIETALLGKKQTHFLHQGNTGITQNLSYIGG
>NC_009778.1|WP_012125301.1|2519518_2520427_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTFADLDRVVALGGGHGLGRVMSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDAFLIPMSEQPVDLMAIDRDDNEVYGEVNIDLLSHPPKELMLYPAVQATREAVEAIAEADLIVIGPGSFYTSLMPLLLLDDLAKALRRTPAPMVYIGNLGRELSPAAAALRLEEKLALMEAHIGKPVVDAVVVGPKVDVSGAQDRIVIQEPLEASDIPYRHDRHLLRAALEKAIQALG
>NC_009778.1|WP_004386467.1|2520651_2522673_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALGENIAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRDKLHQLRELFIAAS
>NC_009778.1|WP_007848473.1|2523153_2523390_-|hypothetical-protein
MKCPSIAPEIETKPESLRQAQWVILEKAGRRAHFECWSGRGFGAALRKSKAKMCEKDRAKRRAESKGNSSKPAGKIFF
>NC_009778.1|WP_004386468.1|2523563_2524271_+|ATP-binding-cassette-domain-containing-protein
MLSLHAVNHFYGTQHTLWDVSLDLLPGECTCVIGAPGMGKTTLLNCVAGYLPVKSGSMLWHETGAAPQELMRVGPDARAALGIRYVPQERRYFSQLTVEENLHIALRAQPENAASPEPVFDLFPTLWTNRHTQAAGLEPELALQLSLAQALVTRPRLLILDEPTRGLGQAFIPRLADLLTRLSREWGMSLLVVERHLSFIRRVADRFCLLHRGRAVARGSAAQLTDARLMHWIAP

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Crispr_ID: NC_009778_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_6

2520530-2520624

Orphan

Consensus_repeat	Method
ATGTAGGGTGGGTAAGCGCAGCGCACCCACCACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_6

>merge|NC_009778|6|2520530-2520624|CRISPRCasFinder
ATGTAGGGTGGGTAAGCGCAGCGCACCCACCACACAGCCCACGGAGCGGACGTTGATGGAATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC

>NC_009778|6|6|2520530-2520624|CRISPRCasFinder
ATGTAGGGTGGGTAAGCGCAGCGCACCCACCACAC	AGCCCACGGAGCGGACGTTGATGGA
ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012125306.1\|2525685_2526837_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_009778.1\|WP_012125301.1\|2519518_2520427_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NC_009778.1\|WP_176686674.1\|2527940_2529248_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NC_009778.1\|WP_004387506.1\|2518184_2519174_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_009778.1\|WP_004387501.1\|2515667_2516375_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_009778.1\|WP_012125298.1\|2514421_2515450_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NC_009778.1\|WP_007848473.1\|2523153_2523390_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125305.1\|2524943_2525702_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NC_009778.1\|WP_007896458.1\|2529315_2529996_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NC_009778.1\|WP_004386467.1\|2520651_2522673_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_009778.1\|WP_012125304.1\|2524267_2524951_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NC_009778.1\|WP_004387497.1\|2512422_2513184_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NC_009778.1\|WP_004387498.1\|2513180_2514422_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NC_009778.1\|WP_004386468.1\|2523563_2524271_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274567
NC_009778.1\|WP_004387503.1\|2516923_2517169_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NC_009778.1\|WP_004387505.1\|2517650_2518163_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NC_009778.1\|WP_004385710.1\|2526833_2527874_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NC_009778.1\|WP_007896459.1\|2530009_2530486_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NC_009778.1\|WP_004387504.1\|2517161_2517647_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_009778.1\|WP_007896449.1\|2516469_2516922_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012125301.1\|2519518_2520427_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.66361e-125
NC_009778.1\|WP_176686674.1\|2527940_2529248_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NC_009778.1\|WP_004387506.1\|2518184_2519174_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NC_009778.1\|WP_004387501.1\|2515667_2516375_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	4.53983e-77
NC_009778.1\|WP_012125298.1\|2514421_2515450_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	1.7304e-54
NC_009778.1\|WP_004386468.1\|2523563_2524271_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.05611e-68
NC_009778.1\|WP_012125305.1\|2524943_2525702_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.33483e-152
NC_009778.1\|WP_007896458.1\|2529315_2529996_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	3.96932e-115
NC_009778.1\|WP_004386467.1\|2520651_2522673_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_009778.1\|WP_012125304.1\|2524267_2524951_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.48332e-105
NC_009778.1\|WP_004387497.1\|2512422_2513184_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	8.08801e-89
NC_009778.1\|WP_004387498.1\|2513180_2514422_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NC_009778.1\|WP_012125306.1\|2525685_2526837_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_009778.1\|WP_004387503.1\|2516923_2517169_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	1.85359e-49
NC_009778.1\|WP_004387505.1\|2517650_2518163_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.26853e-96
NC_009778.1\|WP_004385710.1\|2526833_2527874_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NC_009778.1\|WP_007896459.1\|2530009_2530486_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.95762e-116
NC_009778.1\|WP_004387504.1\|2517161_2517647_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	8.07064e-104
NC_009778.1\|WP_007896449.1\|2516469_2516922_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	1.04265e-115

>NC_009778.1|WP_012125301.1|2519518_2520427_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTFADLDRVVALGGGHGLGRVMSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDAFLIPMSEQPVDLMAIDRDDNEVYGEVNIDLLSHPPKELMLYPAVQATREAVEAIAEADLIVIGPGSFYTSLMPLLLLDDLAKALRRTPAPMVYIGNLGRELSPAAAALRLEEKLALMEAHIGKPVVDAVVVGPKVDVSGAQDRIVIQEPLEASDIPYRHDRHLLRAALEKAIQALG
>NC_009778.1|WP_004387506.1|2518184_2519174_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSVTDVCNFRCTYCLPDGYKPAGVTNKGFLSLDEIRRVTRAFANLGTEKVRLTGGEPSLRRDFCDIIAAVRENPSIRQIAVTTNGYRLARDVAQWREAGLTAVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVKVNTVLMRDVNHHQLDTFLNWIQSRPIQLRFIELMETGEGSDLFRKHHISGATIRDELLKRGWIHQLRSRADGPAQVFCHPDYQGEIGLIMPYEKDFCASCNRLRVSSVGKLHLCLFGDGGVDLRDLLAEEGQQAALMARIETALLGKKQTHFLHQGNTGITQNLSYIGG
>NC_009778.1|WP_004387505.1|2517650_2518163_-|molybdenum-cofactor-biosynthesis-protein-B
MSQVSAEFVPARVAILTVSSRRGEEDDTSGHFLRDAAHEAGHQVVDKAIVKENRYAIRAEVSRWIASDDVQVVLINGGTGFTAGDQVPEALQPLFDREIAGFGEMFRMLSFEEIGTAMMQSRAVAGMANDTLIFAMPGSTRACRTAWENIIAPQLDARTRPCNFHPHLKK
>NC_009778.1|WP_004387504.1|2517161_2517647_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINAAGEAHMVDVSGKAETVREARAEAFVEMRPETLSMIVSGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLFADEARSRVRIESLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFQVDAHD
>NC_009778.1|WP_004387503.1|2516923_2517169_-|molybdopterin-synthase-sulfur-carrier-subunit
MINVLFFAQVRELIGVDAERVAAEFATVEALREHFAARGGRYALALESGKLLAAVNQTLVPFDHPIADGDEVAFFPPVTGG
>NC_009778.1|WP_007896449.1|2516469_2516922_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSETRIRVGHENFSVGDEYQWLAQCDEDGAVVTFTGKVRNHNLGDTVSALTLEHYPGMTEKALAEIVAEARERWPLQRVSVIHRVGELWPGDEIVFVGVTGAHRSQAFDAAQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQAAAKRW
>NC_009778.1|WP_004387501.1|2515667_2516375_-|Bax-inhibitor-1/YccA-family-protein
MDRFPRSNESIVQPRAGLQTFMAQVYGWMTCGLLLTAFVAWYSANNENLMMYIFSSRFVFFGLIIAQLALVFVLSGLVHKLSPAVATALFMLYSALTGLTLSSIFLVYTYASIASTFVVTAGMFGVMSLYGYTTKRDLSGWGNILFMALIGLIIASLVNFWLKSTALMWAVTYIGVIVFVGLTAYDTQKLKALGEQIDVNDHGNLRKYSILGALTLYLDFINLFLMLLRIFGNRR
>NC_009778.1|WP_012125298.1|2514421_2515450_+|UPF0104-family-protein
MAKSHPKWRIAKKILTWVFFIAVVVLIVMYAQKVDWEEVWKVIKNYDRTALLISVALVILSYLLYGCYDLLGRAYCGHKLAKRQVMLVSFVCYAFNLTLSTWVGGVGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGVIFTFGVVKLPAHWYIDEMTLRIIGIALLAVIAVYMWFCAFAKRRHVTIKGQKLVLPSWKFAIAQMVISSANWMAMGAIIWLLLGQEINYFFVLGVLLVSSIAGVIIHIPAGIGVLEAVFIALLGGEHVSHGAIIAALLAYRMLYFFAPLLLAIVIYLVLESRAKKLRAKNEQKLAKAQGADSVREENEEPSLSLAKEK
>NC_009778.1|WP_004387498.1|2513180_2514422_+|cardiolipin-synthase-ClsB
MKTTWRDGNHIELLENGDEFYPAVFDAIDKARSKVILETFIWFDDNVGRQLHDVILNAAQRGVSIEVLLDGYGSPDLSDEFVGTLTSAGVMFRYYDPRPRTMGMRTNVFRRMHRKIVVIDGEVAFVGGINYSAEHMSDYGPEAKQDYAVRVEGPVVQDIYHFVLSNLGEERVSRWWQRHYQQAVENTTPGEAQALFVWRDNNDHRDDIERHYLKMLANAKKEVIIANAYFFPGYRLLHAMRNAARRGVKVKLIVQGEPDMPIVKVGARLLYNYLVKGGVEVYEYLRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDTQFNQTLRDNLTRLIREDCKQVDESMMPKRTWWNLAKSVIVFHFLRHFPAMVGWLPAHTPKLAQVPPPVQPEIETQDRVETENPGVKP
>NC_009778.1|WP_004387497.1|2512422_2513184_+|endonuclease/exonuclease/phosphatase-family-protein
MADNTQRFSFNVLTINTHKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTTHYEFLADTMWSDYAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVPGTEKRGVLHCRITPPGFPKAIHVICVHLGLKEAHRQAQLTMLAELVNSLPEGEPVVVAGDFNDWRQQANRILRNEAGLDEVFTRAHGRPARTFPVSFPLLRLDRIYVKNASASAPTALPLRNWRHLSDHAPLAVEIHL
>NC_009778.1|WP_004386467.1|2520651_2522673_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALGENIAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRDKLHQLRELFIAAS
>NC_009778.1|WP_007848473.1|2523153_2523390_-|hypothetical-protein
MKCPSIAPEIETKPESLRQAQWVILEKAGRRAHFECWSGRGFGAALRKSKAKMCEKDRAKRRAESKGNSSKPAGKIFF
>NC_009778.1|WP_004386468.1|2523563_2524271_+|ATP-binding-cassette-domain-containing-protein
MLSLHAVNHFYGTQHTLWDVSLDLLPGECTCVIGAPGMGKTTLLNCVAGYLPVKSGSMLWHETGAAPQELMRVGPDARAALGIRYVPQERRYFSQLTVEENLHIALRAQPENAASPEPVFDLFPTLWTNRHTQAAGLEPELALQLSLAQALVTRPRLLILDEPTRGLGQAFIPRLADLLTRLSREWGMSLLVVERHLSFIRRVADRFCLLHRGRAVARGSAAQLTDARLMHWIAP
>NC_009778.1|WP_012125304.1|2524267_2524951_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTERWFITGTDTEVGKTIASCALLEAAKAAGFSTAGYKPVASGSDITPQGLRNSDALALQRHSSVALRYEQVNPLTFEEPTSPHIVSQEQGLPIDFTVMSAGLRALEPLADWVQVEGAGGWFTPLSDDATFADWVKQERLPVILVVGVKLGCINHALLTAQAVQAAGLRLAGWVANDVQPPGRRHQEYLATLEQLLPAPMLGEIPWLGAEPDVTPAAQWIDLSKLAR
>NC_009778.1|WP_012125305.1|2524943_2525702_-|malonyl-ACP-O-methyltransferase-BioC
MTVAVDKRAVAAAFGRAAQTYDDFAALQRQSAQLLVEHCGTQGINTVLDAGCGTGAGSLDWRARGCDVTAFDLSPAMLARARERGAAHRYVQGDIEALPFADGSFDLVWSNLAVQWCQSLSEALAGMLRVARPGGRVAFSTLAHGSLDELHQAWAAVDDRPHANRFASAEAVHAAAPAARMTLRQHPVTLLFGDALSAMQSLKGIGATHLHAGRDSRTLTRRELRRLEDAWPRQDGRFPLTYQLISGVIERD
>NC_009778.1|WP_012125306.1|2525685_2526837_-|8-amino-7-oxononanoate-synthase
MTWQARIDAALRAREASHSLRRRVVCTPAPGGALVHQGVRYRNFSGNDYLGLSQHPALIAAWQQGAQTYGVGSGASGHVSGYSDAHQSLENALAHWLGFDRALLFISGFAANQAVVAALMQQSDRILADRLSHASLLEAASHSPATLRRFAHNDSGALAALLGKPCDGLTLVFTEGVFSMDGDSAPLADIAGIAQGAQTLLMVDDAHGVGVQGREGRGSCDVAGIRPDLLLVTFGKAFGLSGAALLCSAPMADYLLQTARHLIYSTAMPAAQACALNAALTVIREGDDLRARLARNIARFRAGAASLPLTLADSQTAIQPLIVGENSAALTLAEKLRERGCWVTAIRPPTVPAGTARLRLTLSAAHQDEDIDALLEALYDGCR
>NC_009778.1|WP_004385710.1|2526833_2527874_-|biotin-synthase-BioB
MAHLSRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLDSARKAKAAGSTRFCMGAAWKNPNDRDMPYLEQMVQGVKALGLETCMTLGTLSDDQAQRLGEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVREAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNEDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQERLEHALRDADNQQYYNAAAV
>NC_009778.1|WP_176686674.1|2527940_2529248_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MGLQVMITPADLAFDRDHIWHPYTSMSAPLPVYPVTHAAGCELHLASGERLVDGMSSWWAAIHGYNHPRLNAAMKTQIDAMSHVMFGGITHPAAIALCRKLVAMTPENLECVFLADSGSVAVEVAMKMALQYWHARGEPRQRFLTFRHGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFASAPQSRFDGEWDERDLAPFARLLAAHRQEIAAVILEPIVQGAGGMRMYHPEWLKRIRRMCDREGILLIADEIATGFGRTGKLFACEHAGVTPDILCLGKALTGGTMTLSATLTTRHVADTISNGEAGCFMHGPTFMGNPLACAVAAESLALLETGEWRAQVAAIEQQLRDELAPCRELPLVADVRVLGAIGVVETTAPVEMAALQRFFVEQGVWVRPFGRLIYLMPPYIITPEQLTRLTRAVCEAVKNPSFFRQ
>NC_009778.1|WP_007896458.1|2529315_2529996_+|type-1-glutamine-amidotransferase-domain-containing-protein
MKILMVLTSHDKLGDTGKKTGFWLEEFAAPYFVFRDAGIDVTLATPQGGQPPLDPKSDAPDAQTADTRRFREDHEAQATLANTARLDEINADEYDALFYPGGHGPLWDLADHPISIALIEHYWGSGKPVAAVCHAPGVLRHVKKPDGSPLVEGKRVTGFTNSEEEAVGLTHVVPFLVEDALKEAGGQFERTDDWGVHVVVDGHLVTGQNPASSAATAEALLKLLHL
>NC_009778.1|WP_007896459.1|2530009_2530486_+|kinase-inhibitor
MKLISVNFNDGDKLPARHVFNGMGYEGDNISPHLTWDEVPPGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQADLPDGAIQTRTDFGTAGYGGAAPPKGETHRYIFTVHALDVERIDVDENASGAMVGFNVHFHRLASASLTAHYI

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Crispr_ID: NC_009778_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_7

2674845-2674927

Orphan

Consensus_repeat	Method
GTAGGGTGGGTAAGCGAAGCGCACCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_7

>merge|NC_009778|7|2674845-2674927|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACCTTTTTACAACACTCACAACATGTGCGTAGGGTGGGTAAGCGAAGCGCACCCACC

>NC_009778|7|7|2674845-2674927|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACC	TTTTTACAACACTCACAACATGTGC
GTAGGGTGGGTAAGCGAAGCGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012125388.1\|2670633_2671596_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183159
NC_009778.1\|WP_165756520.1\|2682922_2683591_+\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
NC_009778.1\|WP_012125390.1\|2672887_2673502_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NC_009778.1\|WP_004385540.1\|2678860_2679082_-\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081
NC_009778.1\|WP_004388199.1\|2673498_2674188_+\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NC_009778.1\|WP_012125386.1\|2667756_2669322_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NC_009778.1\|WP_041460577.1\|2683559_2684273_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_009778.1\|WP_004388195.1\|2669578_2670142_-\|alkyl-hydroperoxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|182423
NC_009778.1\|WP_004387228.1\|2665140_2665551_+\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NC_009778.1\|WP_012125391.1\|2674184_2674727_+\|acireductone-dioxygenase	unknown	unknown	gnl\|CDD\|224704
NC_009778.1\|WP_041460578.1\|2685836_2687744_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NC_009778.1\|WP_032990172.1\|2680610_2682884_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NC_009778.1\|WP_012125393.1\|2679085_2680330_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NC_009778.1\|WP_007848162.1\|2688221_2688704_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|226049
NC_009778.1\|WP_012125389.1\|2671590_2672751_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181642
NC_009778.1\|WP_007781716.1\|2667102_2667531_+\|universal-stress-protein-UspG	unknown	unknown	gnl\|CDD\|185353
NC_009778.1\|WP_007897560.1\|2665618_2666860_-\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
NC_009778.1\|WP_012125392.1\|2674953_2678835_-\|enterobactin-synthase-subunit-F	unknown	unknown	gnl\|CDD\|236668
NC_009778.1\|WP_012125397.1\|2684456_2685572_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|237407
NC_009778.1\|WP_041460579.1\|2688713_2689511_-\|ImpE-family-T6SS-protein-Cts1E	unknown	unknown	gnl\|CDD\|226862

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012125388.1\|2670633_2671596_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|183159	PRK11482, PRK11482, DNA-binding transcriptional regulator.	1.34094e-47
NC_009778.1\|WP_165756520.1\|2682922_2683591_+\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	5.07756e-61
NC_009778.1\|WP_012125390.1\|2672887_2673502_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	8.25541e-140
NC_009778.1\|WP_004385540.1\|2678860_2679082_-\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	1.78163e-20
NC_009778.1\|WP_004388199.1\|2673498_2674188_+\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.89374e-111
NC_009778.1\|WP_012125386.1\|2667756_2669322_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NC_009778.1\|WP_041460577.1\|2683559_2684273_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.39355e-27
NC_009778.1\|WP_004388195.1\|2669578_2670142_-\|alkyl-hydroperoxide-reductase-subunit-C	gnl\|CDD\|182423	PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional.	1.33608e-141
NC_009778.1\|WP_004387228.1\|2665140_2665551_+\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	8.24019e-74
NC_009778.1\|WP_012125391.1\|2674184_2674727_+\|acireductone-dioxygenase	gnl\|CDD\|224704	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	1.8382e-64
NC_009778.1\|WP_041460578.1\|2685836_2687744_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.40866e-62
NC_009778.1\|WP_032990172.1\|2680610_2682884_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NC_009778.1\|WP_012125393.1\|2679085_2680330_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NC_009778.1\|WP_007848162.1\|2688221_2688704_-\|GPW/gp25-family-protein	gnl\|CDD\|226049	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	2.58373e-24
NC_009778.1\|WP_012125389.1\|2671590_2672751_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
NC_009778.1\|WP_007781716.1\|2667102_2667531_+\|universal-stress-protein-UspG	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	2.39777e-85
NC_009778.1\|WP_007897560.1\|2665618_2666860_-\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NC_009778.1\|WP_012125392.1\|2674953_2678835_-\|enterobactin-synthase-subunit-F	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NC_009778.1\|WP_012125397.1\|2684456_2685572_+\|glutamate--cysteine-ligase	gnl\|CDD\|237407	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional.	0
NC_009778.1\|WP_041460579.1\|2688713_2689511_-\|ImpE-family-T6SS-protein-Cts1E	gnl\|CDD\|226862	COG4455, ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only].	1.35137e-79

>NC_009778.1|WP_012125391.1|2674184_2674727_+|acireductone-dioxygenase
MSALTIFADNGASEPLWQSTDADAIREQLNAQGVRFERWQADRELGDNPTPETVLTAYQHAIDLLVAEKGYQSWDVISMRADNPQKEALRDKFLNEHTHGEDEVRFFVEGAGLFCLHIGDKVYQVLCEKNDLISVPAGTPHWFDMGSEPHFTAIRIFDNPEGWIANFTGSPIAEAYPRLA
>NC_009778.1|WP_004388199.1|2673498_2674188_+|acireductone-synthase
MIRAIVTDIEGTTTDIRFVHNVLFPYARERLERFIRSGEQREPVNLLLNELRGEIHAPAASVDQLIETLFKFMDEDRKSPALKSIQGYIWREGYVNGDFTGHLYPDVVPALRRWSAQDIDIYIYSSGSVPAQKLLFSHSDEGDVTELLSGFFDTHVGAKRQVSSYRNISMKTGVPVHQMLFLSDIREELDAAREAGWKTVQLIRGEPDTQSTHRQVSSFDDIHPEQIPT
>NC_009778.1|WP_012125390.1|2672887_2673502_+|methylthioribulose-1-phosphate-dehydratase
MSKESQLEALVAACHWIGAKGWAPATGGNMSLREDARWCWLSESGKDKGSLTTDDFLQVDIATNLAPSGRKPSAETGLHTLIYRLFPEANCVLHVHTVNATVLSRVEKSDALHLSGYEMQKSLAGQITHLDDVPVAIFDNDQDIDALAERIARHHRQFPLRYGFLLRGHGLTCWGSDVAVARRHLEGLEFLFECEMQRRLLERA
>NC_009778.1|WP_012125389.1|2671590_2672751_-|pyridoxal-phosphate-dependent-aminotransferase
MSQTPLTPESKLPALGTTIFTRMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAAGANQYAPMTGVQALREAIADKTEALYGHRPDANSDITVTAGATEALYAAITALVRPGDEVICFDPSYDSYAPAVALSGGVLKRIALTPPHFRVDWAQFAALLSERTRLVILNTPHNPSATVWRNADFAALWAAIAEREIYVLSDEVYEHICFAKEGHASVLAHPQLRERAIAVSSFGKTYHMTGWKVGYCVAPAALSAELRKVHQYLTFSVNTPAQLALADMLRAEPAHYLDLPDFYRARRDRFIQALGDSRFKILPCEGTYFLLADYSAISTLDDVSFCEWLTTEAGVAAIPLSVFCDAPFPHKLIRLCFAKQEATLLAAAERLARL
>NC_009778.1|WP_012125388.1|2670633_2671596_+|LysR-family-transcriptional-regulator
MANLQDLKKFDLNLLVIFECIYLYRSVSKAAEALFLTPSAISQSLQRLRNQLNDPLFVRSGKGITPTTVGTNLHHYLEDNLNQLEQTINIMQGAPLRKNFVLYCPPALAADHLPALVSAFREHYDFELEHYDTTLASETVEDLLAYRKADLIIGMAPVASHSLICKHCFSEETVLVCSENHPRLGEHADDAALAQEKFTLFNGTAEGQKQFHVKSAELFGERQIAFTSNSISSIMAVIGSTDFVGILPAPVLRRYRQLFGLRPVKLNFSLPQYDYYLIYNRSSLTNASFVSFVSLIEQHFLRDVPQAQSRSTASPDQPTL
>NC_009778.1|WP_004388195.1|2669578_2670142_-|alkyl-hydroperoxide-reductase-subunit-C
MSLINTKIKPFKNMAFKNGEFIEVTEKNTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSDTIAKIKYAMIGDPTGALTRNFEIMREDEGLADRGTFIVDPQGVIQAIEITAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPSLDLVGKI
>NC_009778.1|WP_012125386.1|2667756_2669322_-|alkyl-hydroperoxide-reductase-subunit-F
MLDTNMKTQLKAYLERLTKPVELVATLDDSAKSAEIKELLLEIAELSDKVSFREDNTLAARKPSFLITNPGSDQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQALLEQIRDLDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGAVFQNEITERNVMGVPAVFMNGVEFGSGRMTLAEIVAKVDTGAEKRAAEELNQRDAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVDDYDVDVIDTQSATKLIPAASEGGLHQIETASGAVLKARSVIVATGAKWRNMGVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAMTTEVKGDGTKLTGLDYQDRVTGSVKHLEVAGIFVQIGLLPNTTWLEGAVERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKTA
>NC_009778.1|WP_007781716.1|2667102_2667531_+|universal-stress-protein-UspG
MYNTILMPVDVFEMELSDKAIRHAEFLAQEEGIIHLLHVLPGSANLSLHRFAADIRRFEEHLEAEANQRLQTLKQHFTLPESRLRSHVRFGSVRDEVNAMAKELHADVVVIGSRDPSISTHLLGSNASSVVRHAHVPVFVVR
>NC_009778.1|WP_007897560.1|2665618_2666860_-|glutathione-dependent-formaldehyde-dehydrogenase
MKALTYHGPHNVKVENVPDPIIEAQDDIILRVTATAICGSDLHLYRGKIPQVHHGDIFGHEFMGEVVETGSAVKDIRKGDRVVIPFVIACGDCFFCKLQQYSACENTNKGTGAALNKKQIPAPAALFGYSHLYGGIPGGQAEYVRVPKGNVGPFKVPPVLSDDKALFLSDILPTAWQAVKNGQVQKGSQVAIYGAGPVGLLSAACARLLGAEQIFMVDHNDYRLAFAKERYGVIPINFDENDDPAAFIIENTPGNRGVDAVIDAVGFEAKGSLTETVLSNLKIEGSSGKALRQCIAAVRRGGVVSVPGVYAGFIHGFLFGDAFDKGISFKMGQTHVHAFLPELLPLIEQGLLTPEEIVTHYLPLEDAARGYKIFEKREEECRKVILVPGAATPEAAREKVTALMNAPLQPLQP
>NC_009778.1|WP_004387228.1|2665140_2665551_+|nucleoside-diphosphate-kinase-regulator
MSRPALIINELDAERLDSLLEQPAFARLPVADALNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAPVGAALLGLRVGDAIRWPLPDGSETHIEVLELLYQPEAAGEYRL
>NC_009778.1|WP_012125392.1|2674953_2678835_-|enterobactin-synthase-subunit-F
MEQATAALPLVAAQPGIWMAEKLSSQANAWSVAHYVELNGTVDAPLLARAIVAGMMEADTLRMRFEERDGIVTQRFDASLTFAMPEIIDLRHEACPQAAAQRLMHADLEQDLRVTRGKPPVHHALLRVGETRWFWYQRYHHLVVDGFSFTAITRRIADIYGSLRRGEQPDASPFVPFNEVVNEYARYQASDACARDAAFWAQQVRDLPPPATLSDQPLTGQSSTTSLIRRSLRFDDAHFAALMANSGGLTAPDMALALVALWLGRLSGRDAYSAGFIFMRRIGSAALCATGPVLNVLPCPVRIAPEQTLAQFAAAFAKTLKTLRRHQRYDAEQVLRDAGRVAQQTPLYGPVLNLKMFDYRLDFDGVEGITHQLASGPVKDLEIALYIDEQGGVTLELLANQQRYDAAQIERHLARLPHLLTQFAAEPELACAQADLLDDNDYALIARVNQTAVPLPQETLSSLLAKQAQATPQAPALADARYAFTYREMREQVLTLASELVRRGVKPGDIVAVALPRSVFLSLALQAIVETGAAWLPLDTGYPDDRLQMMLEDARPALLITAASEQGRFAHLPSLPVFCYDAPLPASDPQPLLRSRPSHTAYVIFTSGSTGRPKGVMVGQTAIVNRLLWMQSQYPLGADDVVLQKTPCSFDVSVWEFFWPLIVGARLVMAPPQAHRDPQALQALFARWRVTTTHFVPSMLAAFVGALTSEAAIDACASLRQVFCSGEALPTALCRDWERLTAVPLHNLYGPTEAAVDVSGYPAFGAALSQVTGASVPIGFPVWNTGLRILDGRMRPVPPGMAGDLYLTGVQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLPDGAVEYLGRSDDQLKIRGQRIEPGEIDRVMLSLPDVAQAVTHACVLNSHAETGGDARQLVGYLVSASGATLDVAALRARLSELLPAHMVPVTLLQLPALPLSANGKLDRKALPLPQLAVREPGRAVAPGSETAIARAFSELLGVEVTDAQADFFALGGHSLLAMRLAARLTRELERTVTVGQVMVASTVEKLAAAVAEQRDAQAGFGAILPLREGNGPTLFCFHPASGFAWQFSVLQRWLSPRWAITGIQSPRPDGPMQQCASVDELCDRHYATLREQQPHGPYWLFGYSLGGTIAHGVAARLQAAGEEVAFLGLLDTWPPETQNWQEKGGRELDPEVLAEIERERAAFVSAQQGQGSTRLFETIEGNYADAVRLLSTARSTRFEGDATLFVAERTVTPGLNPYEAWAPWTRALDVYSVDCAHVEIIAPQAFEVIGPVLREILG
>NC_009778.1|WP_004385540.1|2678860_2679082_-|MbtH-family-protein
MEFSNPFDNPQGRFWLLENHEKQISLWPEPCALPPGWRVVAAPQPPERCEAWLNEHGQALQPADFAHRNETRG
>NC_009778.1|WP_012125393.1|2679085_2680330_-|enterochelin-esterase
MAEHAAGSDAWWQAKQAQGIPEISGTASGTCCVTFWWRDPAGDESTSDTKRVWIYLTGITDHHKPSAPQSLTRLPGTDAWYWRTELDAAWRGSYCFIPSTNTDDFAPDAFADVPARHALREGWRALLPQAIPDPFNPHHWRGGRGHPMSALHLPDAPAQPGWEEKVVPYTPAQEFLWHSERLGNARRVWLFTTGGDDAPLTRPLAILLDGQFWANSQPVWPALQALTDRGVLPPAVYLLVDVIDTAHRSRELPCNAVFWEALWEELLPQARHYTRWRDAPDTTVIAGQSFGGLAALYAALRWPQRFGCVLSQSGSFWWPTREASGEGGWLVEELAAGRFDPRGLRIYLEAGLHEPLILQANQRLVSLLQRTQPPLFWRQVEGGHDALCWRGGLTDGLAALWAATPAPTPFSGQE
>NC_009778.1|WP_032990172.1|2680610_2682884_+|TonB-dependent-siderophore-receptor
MNKKLPLSLAMLINLGMYGAALPAWAQESTAPVDGNATDGDDTIVVTAAQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVRQGWRGERDSRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKRSSNDWHGSWNSYFDVPEHKAEGATKRTNFSLTGPLGDSVSFRLYGNLAKTQADAQDINAGHESLRTGSYADTLPAGREGVVNKDINGQVRWEFAPMQALEFEAGYSRQGNLYAGDTQNTNNDNSTNGLVKKYYGKETNRLYRQNYAVTWTGGWDNGVTTNTYAQYEHTRNSRLGEGLTGGLEGLFNSEKFSDINLSDVLLHSEVSIPFDWLVNQNLTLGTEWNQQRMKDGTSTAQALTGSTSGGAIPGVDSTNRSPYAKAEIFSLFAEDNMQLTDSTTLTPSLRFDHHTIVGNNWSPALNLTQALTDAVTLKMGIARAYKAPSLYQTNENYILYSRGQGCYASATNTGCYLMGNEDLKAETSVNKEIGLEYKQDGYQAGLTWFRNDYHDKIEAGYTRVTAISNKTDLYQWENVPKAVVEGLEGTLNLPVTDTVQWSNNLTWMLQSKNKTTGDRLSIIPEFTLNSTLSWQVRDDLSLQSTLTWYGRQKPKMYNYKGERVTDSGTNEVSPYSIVGLSGTWDVTKNVSLTAGVDNVFDKRHWRAGNAQTTGNAKTNAWMYGAGAETYNESGRTWFMGINTHF
>NC_009778.1|WP_165756520.1|2682922_2683591_+|enterobactin-synthase-subunit-EntD
MQTTLTSLTFAGQLLWRVDFSPDTFTPADLLWLPHHAMLANAVARRQAEHLAGRIAAVAALKAAGAPFSPPGIGAHREPRWPAGFTGSITHTGHRAWAAVIATPGGIGIDVENLMDAQTARELAPGIIDTQERALLTRTPLPFASALTLAFSAKESLFKALFPQVGDWFGFECAKVVALGDQYLTLRLACPLGPFAQTQCFTLHWRQEAQQILTLVNAPGSG
>NC_009778.1|WP_041460577.1|2683559_2684273_-|GNAT-family-N-acetyltransferase
MAYFNHYDQQVGAPVPGWKGARMPERTTLAGRYCTLEPLNADAHAAALLAAYQDAPDDRDWTWLASDRPDTLAQCHEWVAQKVMDPSLVPFAVMDNARGEAVGLVCFMRIDKANGVLEIGHVTWSPRMKNRVTGTEALWLLMRDAFEHGFRRVEWKCDSMNTASRRAAERLGFTYEGRLRQMMVRKGRNRDSEWFSLLDSEWPQADAALRAWLSPENFTADGIQKQPLSHFRARSPA
>NC_009778.1|WP_012125397.1|2684456_2685572_+|glutamate--cysteine-ligase
MPLKPFAPSEPYTLGVELELQVVSPPGFNLSQDSSTLISALESRVTAGEVKHDITESMLEIATGVCRDINQVAAEFAAMQREILACAQQYHLMISGGGTHPFQKWQRQEVCSSERYARTLELFGYLIKQATVFGQHVHVGCRNGEEAMYLLHGLSRFVPHFVALSASSPYMQGADTGFASSRLNIFSAFPDNGPAPFAADWTQFEKMYARLEGTKVVESIKDLHWDIRPSPGFGTVEVRVMDTPLTLERAINIAGFIQAISHWLLDERPYKHKAEDYLIYRFNRFQACRYGLEGTLTDVSTGEQRTIGEDILRLLDKLERYARPLNASSALEAIHRYVKNNDSDVHRIREFTADGGSLSELVRLNGEIWAA
>NC_009778.1|WP_041460578.1|2685836_2687744_+|methyl-accepting-chemotaxis-protein
MSWIYRLSMKTKLAIALLPLLIALLWLAGAGMLSRIDTERQMRNVEEVTRLAKSAGDVVHELQKERGLSAGYLGSRGAQFSRELTAQRARTDSALAAFNAAMKNTDEESLKGSVGEAIRAFRQRVSMLDDTRQQITALSVPAPQGVAFYTDTISTVLELVGRSTRLSHAGVIVNQMVVYYSLLSMKEQAGVERALLSGIFFADRFADDQLARLSEVVGKQQAWLAASRQLSDAEGVKRIDAALALPSTTRALALRQIAFGKAASGGFGVSPASWFTAQTQRIDTLRTLENAASAQLLATAGQLASDARAGWQRFLAITLLALIVAVSFAVVVARSIHRQLHATLTAIDGMEGDLTRRLDVPGSDELSALNRAYNRAIEDIQRIVAEIKTGAVVLRHASAGIAAGNQDLAQRTDEQAASLVETAASMEQITTVITQTADNAHEAERLTRLMEEEMQSASAVAHAARQSMADIQASSEQISRIVGSIDDISFQTNLLALNAAVEAARAGELGRGFAVVASEVRTLSQRCAREAGLIRELVANNMAKIGEGVEHVDASGKALDGAVANTARMRTFISDIARAAAEQSLGVSQVHEALNQLEQVTQQNAALVSEAATASQTLDNQSETMSQLVNRFVVA
>NC_009778.1|WP_007848162.1|2688221_2688704_-|GPW/gp25-family-protein
MERKKQFAPTLLDRLLDEEPKARHEAHDASFINARRYRQLVLRDIDVLLNNTNIEALIDPVRHPAVVNSVINHGLAPLSGKYATPQSWTMVEQAIRNALLRFEPRIIPSSLVVSPKRQSAPGTTLWFEIAALLYWQPEPVGFAVSGSYDTETEKTTLTAL
>NC_009778.1|WP_041460579.1|2688713_2689511_-|ImpE-family-T6SS-protein-Cts1E
MTTEITFKDLLNRAAFDAHFNATTSRLKAQPDNSAARELLFKFYCLEGDWHNALTHLEILKALDAEYTKRVELYKNLVMSEILRARVLAGDITPAGLTEPLPEWVALLHEANRQFAAGEDEDAERLRQQAFDLAPLTAGEGEEIAPFSWIADSDGRLGPVCEFICAGGYRWVPFSALRALKIHRPVDLLDLLWLPAQVTLADGQFQGYIPARYPLTPQATQETLLGSLTDWQPVSESLCIGLGRKMLITDNADYALPDLRELRFY

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Crispr_ID: NC_009778_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_8

2690689-2690994

Orphan

Consensus_repeat	Method
GCGTATCCGTNGGCGTAT	CRT

7 spacers

The CRISPR arrays of NC_009778_8

>merge|NC_009778|8|2690689-2690994|CRT
GCGTTTCCGTCGGTGTATCGGTTGGCGTATCGGTCGGCGTATCCGTCGGCGTATCGGTCGGCGTATCGGTCGGCGTATCCGTTGGCGTATCCGTTGGCGTATCCGTTGGCGTATCCGTTGGCGTATCCGTCGGCGTATCGGTTGGCGTATCCGTCGGCGTATCGGTCGGCGTATCCGTTGGCGTATCGGTCGGCGTATCCGTTGGCGTATCCGTTGGCGTATCCGTCGGCGTATCCGTTGGCGTATCGGTTGGTGTATCCGTTGGCGTATCGGTTGGCGTATCCGTCGGCGTATCGGTTGGTGTAT

>NC_009778|8|1|2690689-2690994|CRT
GCGTTTCCGTCGGTGTAT	CGGTTGGCGTATCGGTCG
GCGTATCCGTCGGCGTAT	CGGTCGGCGTATCGGTCGGCGTATCCGTTG
GCGTATCCGTTGGCGTAT	CCGTTGGCGTATCCGTTG
GCGTATCCGTCGGCGTAT	CGGTTGGCGTATCCGTCGGCGTATCGGTCG
GCGTATCCGTTGGCGTAT	CGGTCGGCGTATCCGTTG
GCGTATCCGTTGGCGTAT	CCGTCGGCGTATCCGTTGGCGTATCGGTTG
GTGTATCCGTTGGCGTAT	CGGTTGGCGTATCCGTCG
GCGTATCGGTTGGTGTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_165756520.1\|2682922_2683591_+\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
NC_009778.1\|WP_012125400.1\|2689528_2690317_-\|TagK-domain-containing-protein	unknown	unknown	gnl\|CDD\|380262
NC_009778.1\|WP_165756271.1\|2698299_2698797_-\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381619
NC_009778.1\|WP_032986368.1\|2698805_2699051_-\|lysis-protein	unknown	unknown	gnl\|CDD\|368216
NC_009778.1\|WP_012125413.1\|2699811_2700576_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NC_009778.1\|WP_041460730.1\|2697252_2697453_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_124813642.1\|2694587_2694974_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376028
NC_009778.1\|WP_041460577.1\|2683559_2684273_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_009778.1\|WP_012125412.1\|2699269_2699551_+\|DUF1456-family-protein	unknown	unknown	unknown
NC_009778.1\|WP_041460580.1\|2694977_2695958_-\|minor-capsid-protein	unknown	unknown	gnl\|CDD\|309383
NC_009778.1\|WP_041460578.1\|2685836_2687744_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NC_009778.1\|WP_032990172.1\|2680610_2682884_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NC_009778.1\|WP_041460579.1\|2688713_2689511_-\|ImpE-family-T6SS-protein-Cts1E	unknown	unknown	gnl\|CDD\|226862
NC_009778.1\|WP_041460581.1\|2696796_2697243_-\|ubiquitin-carboxyl-hydrolase	unknown	unknown	unknown
NC_009778.1\|WP_007848162.1\|2688221_2688704_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|226049
NC_009778.1\|WP_012125409.1\|2697845_2698310_-\|lysis-protein	unknown	unknown	gnl\|CDD\|281263
NC_009778.1\|WP_012125414.1\|2700572_2700752_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125401.1\|2690322_2690583_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269827
NC_009778.1\|WP_012125397.1\|2684456_2685572_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|237407
NC_009778.1\|WP_012125393.1\|2679085_2680330_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_165756520.1\|2682922_2683591_+\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	5.07756e-61
NC_009778.1\|WP_012125400.1\|2689528_2690317_-\|TagK-domain-containing-protein	gnl\|CDD\|380262	NF033419, T6SS_TagK_dom, TagK domain-containing protein.	1.10276e-25
NC_009778.1\|WP_165756271.1\|2698299_2698797_-\|glycoside-hydrolase-family-protein	gnl\|CDD\|381619	cd16900, endolysin_R21-like, endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	7.94568e-76
NC_009778.1\|WP_032986368.1\|2698805_2699051_-\|lysis-protein	gnl\|CDD\|368216	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	1.63395e-19
NC_009778.1\|WP_012125413.1\|2699811_2700576_-\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	3.87849e-31
NC_009778.1\|WP_124813642.1\|2694587_2694974_+\|hypothetical-protein	gnl\|CDD\|376028	pfam18602, Rap1a, Rap1a immunity proteins. The structures of the immunity proteins, Rap1a, responsible for the inhibition and neutralization of Ssp1 endopeptidase, revealed two distinct folds. The structure of the Ssp1-Rap1a complex revealed a tightly bound heteromeric assembly with two effector molecules flanking a Rap1a dimer. The Rap1a subunit displays a compact globular structure constructed from five alpha-helices that assemble to form the highly stable symmetric dimer.	4.28295e-06
NC_009778.1\|WP_041460577.1\|2683559_2684273_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.39355e-27
NC_009778.1\|WP_041460580.1\|2694977_2695958_-\|minor-capsid-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	1.37154e-13
NC_009778.1\|WP_041460578.1\|2685836_2687744_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.40866e-62
NC_009778.1\|WP_032990172.1\|2680610_2682884_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NC_009778.1\|WP_041460579.1\|2688713_2689511_-\|ImpE-family-T6SS-protein-Cts1E	gnl\|CDD\|226862	COG4455, ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only].	1.35137e-79
NC_009778.1\|WP_007848162.1\|2688221_2688704_-\|GPW/gp25-family-protein	gnl\|CDD\|226049	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	2.58373e-24
NC_009778.1\|WP_012125409.1\|2697845_2698310_-\|lysis-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	2.32005e-47
NC_009778.1\|WP_012125401.1\|2690322_2690583_-\|PAAR-domain-containing-protein	gnl\|CDD\|269827	cd14742, PAAR_RHS, proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions. This PAAR (proline-alanine-alanine-arginine) repeat subfamily, which forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS), contains C- and N-terminal domain extensions. These include Rearrangement hotspot (Rhs) protein repeats and conserved Rhs repeat-associated unique core sequences at the C-terminal, and various predicted functions at N- and C-terminal extensions. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. Rhs and related YD-peptide repeat proteins are widely distributed in bacteria. Rhs shares similar architecture with distantly related WapA proteins of Bacillus and Listeria species, suggesting intercellular growth inhibition as its primary function. Additionally, a plasmid-encoded Rhs protein has been implicated in bacteriocin production in Pseudomonas savastanoi. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	1.29482e-23
NC_009778.1\|WP_012125397.1\|2684456_2685572_+\|glutamate--cysteine-ligase	gnl\|CDD\|237407	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional.	0
NC_009778.1\|WP_012125393.1\|2679085_2680330_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0

>NC_009778.1|WP_012125401.1|2690322_2690583_-|PAAR-domain-containing-protein
MQNAARAGDAISHGGAISNGSGNVSINGAPAAMQGASSASCSIHGASAVSSGSGSVFINNNPAARTGDATGCGAAIASGSGDVFIG
>NC_009778.1|WP_012125400.1|2689528_2690317_-|TagK-domain-containing-protein
MQIRFIWPANGGAITLNEQHDAAWLDIDSGEFIPAGARERTNVLCFSLRGTQPYMTLAATDYVCFAGHERLAPGQPYPLRYGLTVQAGRYALQVAMAQETDAAGLPENADEWAVREVDALLSRSVRYVDWQGPQETRADDDILKRLENEYKRFLAWGAQRRDATSSPAPSRLRLKEAASDIAQLREQMKEKTLTECILGSSALIAQALETLSGLEADPELFSAPRYDILKMLSPDAQHIKAPTRLPALTVREFHQPDLDSLL
>NC_009778.1|WP_041460579.1|2688713_2689511_-|ImpE-family-T6SS-protein-Cts1E
MTTEITFKDLLNRAAFDAHFNATTSRLKAQPDNSAARELLFKFYCLEGDWHNALTHLEILKALDAEYTKRVELYKNLVMSEILRARVLAGDITPAGLTEPLPEWVALLHEANRQFAAGEDEDAERLRQQAFDLAPLTAGEGEEIAPFSWIADSDGRLGPVCEFICAGGYRWVPFSALRALKIHRPVDLLDLLWLPAQVTLADGQFQGYIPARYPLTPQATQETLLGSLTDWQPVSESLCIGLGRKMLITDNADYALPDLRELRFY
>NC_009778.1|WP_007848162.1|2688221_2688704_-|GPW/gp25-family-protein
MERKKQFAPTLLDRLLDEEPKARHEAHDASFINARRYRQLVLRDIDVLLNNTNIEALIDPVRHPAVVNSVINHGLAPLSGKYATPQSWTMVEQAIRNALLRFEPRIIPSSLVVSPKRQSAPGTTLWFEIAALLYWQPEPVGFAVSGSYDTETEKTTLTAL
>NC_009778.1|WP_041460578.1|2685836_2687744_+|methyl-accepting-chemotaxis-protein
MSWIYRLSMKTKLAIALLPLLIALLWLAGAGMLSRIDTERQMRNVEEVTRLAKSAGDVVHELQKERGLSAGYLGSRGAQFSRELTAQRARTDSALAAFNAAMKNTDEESLKGSVGEAIRAFRQRVSMLDDTRQQITALSVPAPQGVAFYTDTISTVLELVGRSTRLSHAGVIVNQMVVYYSLLSMKEQAGVERALLSGIFFADRFADDQLARLSEVVGKQQAWLAASRQLSDAEGVKRIDAALALPSTTRALALRQIAFGKAASGGFGVSPASWFTAQTQRIDTLRTLENAASAQLLATAGQLASDARAGWQRFLAITLLALIVAVSFAVVVARSIHRQLHATLTAIDGMEGDLTRRLDVPGSDELSALNRAYNRAIEDIQRIVAEIKTGAVVLRHASAGIAAGNQDLAQRTDEQAASLVETAASMEQITTVITQTADNAHEAERLTRLMEEEMQSASAVAHAARQSMADIQASSEQISRIVGSIDDISFQTNLLALNAAVEAARAGELGRGFAVVASEVRTLSQRCAREAGLIRELVANNMAKIGEGVEHVDASGKALDGAVANTARMRTFISDIARAAAEQSLGVSQVHEALNQLEQVTQQNAALVSEAATASQTLDNQSETMSQLVNRFVVA
>NC_009778.1|WP_012125397.1|2684456_2685572_+|glutamate--cysteine-ligase
MPLKPFAPSEPYTLGVELELQVVSPPGFNLSQDSSTLISALESRVTAGEVKHDITESMLEIATGVCRDINQVAAEFAAMQREILACAQQYHLMISGGGTHPFQKWQRQEVCSSERYARTLELFGYLIKQATVFGQHVHVGCRNGEEAMYLLHGLSRFVPHFVALSASSPYMQGADTGFASSRLNIFSAFPDNGPAPFAADWTQFEKMYARLEGTKVVESIKDLHWDIRPSPGFGTVEVRVMDTPLTLERAINIAGFIQAISHWLLDERPYKHKAEDYLIYRFNRFQACRYGLEGTLTDVSTGEQRTIGEDILRLLDKLERYARPLNASSALEAIHRYVKNNDSDVHRIREFTADGGSLSELVRLNGEIWAA
>NC_009778.1|WP_041460577.1|2683559_2684273_-|GNAT-family-N-acetyltransferase
MAYFNHYDQQVGAPVPGWKGARMPERTTLAGRYCTLEPLNADAHAAALLAAYQDAPDDRDWTWLASDRPDTLAQCHEWVAQKVMDPSLVPFAVMDNARGEAVGLVCFMRIDKANGVLEIGHVTWSPRMKNRVTGTEALWLLMRDAFEHGFRRVEWKCDSMNTASRRAAERLGFTYEGRLRQMMVRKGRNRDSEWFSLLDSEWPQADAALRAWLSPENFTADGIQKQPLSHFRARSPA
>NC_009778.1|WP_165756520.1|2682922_2683591_+|enterobactin-synthase-subunit-EntD
MQTTLTSLTFAGQLLWRVDFSPDTFTPADLLWLPHHAMLANAVARRQAEHLAGRIAAVAALKAAGAPFSPPGIGAHREPRWPAGFTGSITHTGHRAWAAVIATPGGIGIDVENLMDAQTARELAPGIIDTQERALLTRTPLPFASALTLAFSAKESLFKALFPQVGDWFGFECAKVVALGDQYLTLRLACPLGPFAQTQCFTLHWRQEAQQILTLVNAPGSG
>NC_009778.1|WP_032990172.1|2680610_2682884_+|TonB-dependent-siderophore-receptor
MNKKLPLSLAMLINLGMYGAALPAWAQESTAPVDGNATDGDDTIVVTAAQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVSSRNSVRQGWRGERDSRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKRSSNDWHGSWNSYFDVPEHKAEGATKRTNFSLTGPLGDSVSFRLYGNLAKTQADAQDINAGHESLRTGSYADTLPAGREGVVNKDINGQVRWEFAPMQALEFEAGYSRQGNLYAGDTQNTNNDNSTNGLVKKYYGKETNRLYRQNYAVTWTGGWDNGVTTNTYAQYEHTRNSRLGEGLTGGLEGLFNSEKFSDINLSDVLLHSEVSIPFDWLVNQNLTLGTEWNQQRMKDGTSTAQALTGSTSGGAIPGVDSTNRSPYAKAEIFSLFAEDNMQLTDSTTLTPSLRFDHHTIVGNNWSPALNLTQALTDAVTLKMGIARAYKAPSLYQTNENYILYSRGQGCYASATNTGCYLMGNEDLKAETSVNKEIGLEYKQDGYQAGLTWFRNDYHDKIEAGYTRVTAISNKTDLYQWENVPKAVVEGLEGTLNLPVTDTVQWSNNLTWMLQSKNKTTGDRLSIIPEFTLNSTLSWQVRDDLSLQSTLTWYGRQKPKMYNYKGERVTDSGTNEVSPYSIVGLSGTWDVTKNVSLTAGVDNVFDKRHWRAGNAQTTGNAKTNAWMYGAGAETYNESGRTWFMGINTHF
>NC_009778.1|WP_012125393.1|2679085_2680330_-|enterochelin-esterase
MAEHAAGSDAWWQAKQAQGIPEISGTASGTCCVTFWWRDPAGDESTSDTKRVWIYLTGITDHHKPSAPQSLTRLPGTDAWYWRTELDAAWRGSYCFIPSTNTDDFAPDAFADVPARHALREGWRALLPQAIPDPFNPHHWRGGRGHPMSALHLPDAPAQPGWEEKVVPYTPAQEFLWHSERLGNARRVWLFTTGGDDAPLTRPLAILLDGQFWANSQPVWPALQALTDRGVLPPAVYLLVDVIDTAHRSRELPCNAVFWEALWEELLPQARHYTRWRDAPDTTVIAGQSFGGLAALYAALRWPQRFGCVLSQSGSFWWPTREASGEGGWLVEELAAGRFDPRGLRIYLEAGLHEPLILQANQRLVSLLQRTQPPLFWRQVEGGHDALCWRGGLTDGLAALWAATPAPTPFSGQE
>NC_009778.1|WP_124813642.1|2694587_2694974_+|hypothetical-protein
MNTVESHVLPFWDIKMKKVIFAALLSVSSVCNAGFLTGNDLYTKYQAYTRTDNGSASSADYELANEYLGYVAGVWDTMRDTSICPKGTVTRGQISDIVGQGLKNNPQDRADPGARLVLGYLMKAFPCS
>NC_009778.1|WP_041460580.1|2694977_2695958_-|minor-capsid-protein
MNNRQRPGSPIIPRNKADPTQSYRTVNRMFRDIENRYYQIKKALKQLLDGYLVGRERSGNSLYGYILAREGSKPDTLYQVNAGTFIYDMSPQQLSDLLLRIETILDDYLLEGGNNNLWALQYVSDEYQRGTLQAFTNLSAQSAIYEQSTTLQQLLSSPAYQNQVAAAYISTYSEWRGITDAARADLSNIVADAIGRGVNPRETASLISKRLDVSMSRAKTIAQTEQVGALRQAQWSEAEWSKERLGLNAALLWISALKSTTRPWHAARHGKTFTTEEVEAFYAQNGNRYNCYCSQIPVLLNDDGALFNEGLAEKLSKERQKWSGIP
>NC_009778.1|WP_041460581.1|2696796_2697243_-|ubiquitin-carboxyl-hydrolase
MATESKTGRPSDYLPEVAADICSLLADGESLRKVCERPGMPNKSTVFRWLAQHEEFRDQYAKATETRADAIFEEMFDIADTVAEEAAAVGKARLRIDTRKWALARMNPKKYGDKVSQEIDHKSSDGTMATKPTTIRLVGVDPDNGKPS
>NC_009778.1|WP_041460730.1|2697252_2697453_-|hypothetical-protein
MADIYRITVKTKTGETHEGLMKRSQPEIINGFIGVAREDGSWVYLAPDNVQEMEYVPEPEVEEQTS
>NC_009778.1|WP_012125409.1|2697845_2698310_-|lysis-protein
MTFKWKLILFAAMSLLLAIAIVIASHYRSALKESQASLTKVNRELNLAKDTISDMQTRQRDVAALDAKYTQELADAQATIDQLHDDVASGKRRLQLHATCTKQSASGTASLDDAASPGLTDSAERDYFTLRERIETVTRQLSGLQAYVREQCLR
>NC_009778.1|WP_165756271.1|2698299_2698797_-|glycoside-hydrolase-family-protein
MPSSLRNKLIAAAGAGSMVIATIFIGGKDGVEGRKYQAYKDVAGVWTVCDGHTGNDIIRGKTYTDKECDRLLWKDLQPAKATVDKLVKVPLSEYQRASLYSFVFNVGSDAFAKSTLLRKLNKGDQEGACEEMRRWVYAGGMKWKGLQNRREMERSMCLAESENDL
>NC_009778.1|WP_032986368.1|2698805_2699051_-|lysis-protein
MSHMSKLASGAAYGASAGTVANGLLTRLSPDEWSAVGVIAGIVVALLTFGINWYYKRKTTLAQIQAYERWPSAAGQLSKED
>NC_009778.1|WP_012125412.1|2699269_2699551_+|DUF1456-family-protein
MDNGQLTVNLKLIASALKLTRHDLVEIVREGGMEISSTHADKWLRAKGATKIATGNSADYGAHINRTETIKDDEFRAFCIGLKPWLDKLSAEK
>NC_009778.1|WP_012125413.1|2699811_2700576_-|antitermination-protein
MNLENALKYHFAKSTMINDSPRATASDALTGTDIMAAQGMVQNRAQMGFAAFMGKMGVSSNDREKAIELLTLYAIERCDKVAALRKLESDIKPKVMQALATYAFEDYSRNAGSTRQCECCNGAGFIHAEVVTMKHIGRPNLAARREQVKVLCQKCKGKGVVSTACSDCKGRGKAINQEETEKQGVPVVSDCRRCGGVGYPRLPSTEAFAAVCQITDAISLDTWKKSVKPFYDGLIIKFEVEESWADAQLREVTR
>NC_009778.1|WP_012125414.1|2700572_2700752_-|hypothetical-protein
MTTVTNIALAQQRQKDKEMLEAIEWQLNNVHETEKRLMEMRRELVNRLGINKPEGGDAA

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Crispr_ID: NC_009778_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_9

2710434-2710528

Orphan

Consensus_repeat	Method
GGTGGGTGCGCTGCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_9

>merge|NC_009778|9|2710434-2710528|CRISPRCasFinder
GGTGGGTGCGCTGCGCTTACCCACCCTACCATTCACCTTTTTACGGAGTGTGATGGGTGTTTGAATGGTGGGTGCGCTGCGCTTACCCACCCTAC

>NC_009778|9|8|2710434-2710528|CRISPRCasFinder
GGTGGGTGCGCTGCGCTTACCCACCCTAC	CATTCACCTTTTTACGGAGTGTGATGGGTGTTTGAAT
GGTGGGTGCGCTGCGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004387148.1\|2709314_2710382_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_009778.1\|WP_012125426.1\|2713494_2714628_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_009778.1\|WP_004385475.1\|2717028_2717715_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182569
NC_009778.1\|WP_004387145.1\|2707455_2707950_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NC_009778.1\|WP_004385478.1\|2719169_2720024_+\|co-chaperone-YbbN	unknown	unknown	gnl\|CDD\|225660
NC_009778.1\|WP_012125430.1\|2720133_2721051_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NC_009778.1\|WP_012125419.1\|2703104_2704604_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NC_009778.1\|WP_012125415.1\|2700748_2701006_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_004387141.1\|2702615_2702828_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NC_009778.1\|WP_012125417.1\|2701747_2702614_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NC_009778.1\|WP_012125424.1\|2711788_2713159_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NC_009778.1\|WP_012125423.1\|2707953_2708676_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NC_009778.1\|WP_004387147.1\|2708808_2709318_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NC_009778.1\|WP_004385477.1\|2718340_2719111_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181198
NC_009778.1\|WP_007891967.1\|2710631_2711777_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NC_009778.1\|WP_004385476.1\|2717682_2718312_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	unknown	unknown	gnl\|CDD\|182521
NC_009778.1\|WP_012125425.1\|2713217_2713391_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_041460582.1\|2705893_2707279_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_009778.1\|WP_012125427.1\|2714617_2717032_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
NC_009778.1\|WP_012125420.1\|2704668_2705685_+\|Mal-regulon-transcriptional-regulator-MalI	unknown	unknown	gnl\|CDD\|182193

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004387148.1\|2709314_2710382_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	9.51465e-174
NC_009778.1\|WP_012125426.1\|2713494_2714628_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	2.29331e-159
NC_009778.1\|WP_004385475.1\|2717028_2717715_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182569	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional.	6.23474e-154
NC_009778.1\|WP_004387145.1\|2707455_2707950_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.10618e-122
NC_009778.1\|WP_004385478.1\|2719169_2720024_+\|co-chaperone-YbbN	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.15144e-115
NC_009778.1\|WP_012125430.1\|2720133_2721051_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	5.29747e-76
NC_009778.1\|WP_012125419.1\|2703104_2704604_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.21517e-174
NC_009778.1\|WP_004387141.1\|2702615_2702828_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	8.16466e-44
NC_009778.1\|WP_012125417.1\|2701747_2702614_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NC_009778.1\|WP_012125424.1\|2711788_2713159_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	1.99045e-127
NC_009778.1\|WP_012125423.1\|2707953_2708676_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	6.74363e-165
NC_009778.1\|WP_004387147.1\|2708808_2709318_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.80788e-89
NC_009778.1\|WP_007891967.1\|2710631_2711777_-\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NC_009778.1\|WP_004385477.1\|2718340_2719111_+\|SDR-family-oxidoreductase	gnl\|CDD\|181198	PRK08017, PRK08017, SDR family oxidoreductase.	0
NC_009778.1\|WP_004385476.1\|2717682_2718312_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	gnl\|CDD\|182521	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional.	2.47427e-131
NC_009778.1\|WP_041460582.1\|2705893_2707279_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_009778.1\|WP_012125427.1\|2714617_2717032_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_009778.1\|WP_012125420.1\|2704668_2705685_+\|Mal-regulon-transcriptional-regulator-MalI	gnl\|CDD\|182193	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional.	1.692e-111

>NC_009778.1|WP_004387148.1|2709314_2710382_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIRVWPVGLDADPQAVPFAQSVITAEIERWPETALTRELARHNAFVNRDVFPLIADRFTQKQLLDKLNLPTAPWQLLASSDEWPQIFESLGDLAIVKRRTGGYDGRGQWRLRENETETLPAECYGECIVERGINFTGEVSLVGARARDGSAVFYPLTHNLHQDGILRTSVAFPQANATQQKQAEAMLRAIMDELNYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAVTNLPLPQPVVSGPSVMVNLIGTDLNYDWLKLPLVHLHWYDKEVREGRKVGHLNLSDAEATLIDATLEALSPLLPPEYASGIAWAQAHLR
>NC_009778.1|WP_004387147.1|2708808_2709318_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSSHTPARIAIVMGSRSDWATMQFAAEILDALDVPHHVEVVSAHRTPDKLFSFAERAQENGFQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGLDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHDSALLARLEHWRQKQTEEVLENPDPRGEA
>NC_009778.1|WP_012125423.1|2707953_2708676_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCSEEPAITAGFLRFLAGTAREADALYILGDLFEAWIGDDDPEPLHREIAAALRALVQSGVPCYFIHGNRDFLLGRRFARESGMQLLPEEQVLDLYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLRLRRRIAARMRAGSKASNSQKDLAIMDVNPQAVVDTMERQQVQWLIHGHTHRPAVHTLEANGKPAHRVVLGAWHSEGSMVKVTPDNVELVAFPF
>NC_009778.1|WP_004387145.1|2707455_2707950_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYDNTIFHRVINGFMIQGGGFEPGMKQKSTKDPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVSTGRSGMHQDVPKEDVIIERVTVSE
>NC_009778.1|WP_041460582.1|2705893_2707279_-|cysteine--tRNA-ligase
MLKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGEDFVALVDRMVTEMHKDFDALNILRPDSEPRATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVADSKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQHYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATVAGGEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSGAQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILEDGPQGTTWRRK
>NC_009778.1|WP_012125420.1|2704668_2705685_+|Mal-regulon-transcriptional-regulator-MalI
MKKVSIIDVARQAGVSVSTVSLVLREKGKISAATIEKVHAAIEALGYVHNVAAANLRGKTSNLIGLVVEDLNDPFSTRVTASLVQALEAQGFMVFLTQPGRDTSRLESCFVSFTRQGVAGVVYLTADSRHRALPTPVVQSTLPLVVVSQSPVEEKRNSVVRDNRQAGGLATRYLIERGHRNIAYIGGTAGCLIREERLYGYRAALSQYGLPWRDEFAPACAEETLAVSQTVRQLLEANNKITALLCHSPHAIIGCLEAIHQVGRTVGKDVFLTQQVSLIGFEDMMHVNLTSPSFTYVSSASEETGHQAAGLIVRLIREPDLPAQRITLSGQLIARGSA
>NC_009778.1|WP_012125419.1|2703104_2704604_+|PTS-transporter-subunit-EIIC
MSLITGLVKSLSKLSMIGRALMLPISLLPAAGLLLAFGDKFHLPLMMNAGGVIFDNLPLLFAIGSAVGLASESGIAALSAAVSVFIINITISTQLGITPEMAASGGKYAMVVGIPTLQMGVFGGLISGILAAWCYNRFHTLQLPEFLGFFSGKRFVAIAAAFLSFLLGLALPYVWQHIQAGIDALSVIVNGDNQAASTFIFGLVERALIPLGLHHIWYPSFWYSFGDYTTQSGQVIHGDQTIWFKMLEEGVKSFSSNTYQNAGKFMQGEFPLMLFALPAACLAMYHEASTKNKKIASGILFSAALTCFLTGITEPVEFTFIFVAPVLYVFNAIMAGLAYMSMYLLDAHIAKSFSAGLIDYISFGILPSFNGYQTHYLNAVIVGIPMAIIYYFTFRFVIRRFDVKTPGRVDVTASADDKTDAELAGNIVGLLGGKENITSVGACITRLRLEVARPDLVDKDGLNGLGARGVVFVGDNGIQVIFGARAQFIAQSLSGMTGK
>NC_009778.1|WP_004387141.1|2702615_2702828_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIVISEGLVTVDGAVETRKRCKIVAGQTVSFDGQSVTVTA
>NC_009778.1|WP_012125417.1|2701747_2702614_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRLEVAEKVKARVAAGKRAPGLAVVLVGANPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADAAIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRQHVENADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLENGKVVGDVVFEEAAKRASYITPVPGGVGPMTVATLIQNTLQACVEYHDGEEA
>NC_009778.1|WP_012125415.1|2700748_2701006_-|hypothetical-protein
MSEVSREVCEEYLDALVTVELAAKLAQKDGRKVNGAIRATVNALLPRLSDRKVHGIFTGLARQPFPDGALKMLRRQLDSMVGEPA
>NC_009778.1|WP_007891967.1|2710631_2711777_-|PLP-dependent-transferase
MDKFATLSVHSGTHHDQHGAVMPPIYATSTYAQPAPGEHTGYEYSRSGNPTRHALERAIAELEAGSQGFAFASGLAAISTVLELLDKESHIVAVDDVYGGTYRLLENVRKRTAGLTVSWVKPDDLAALEAAIRPETRMIWVETPTNPLLKLADLEAIAGLARRRGLISVADNTFASPAIHRPLTLGFDIVVHSATKYLNGHSDVVAGLAVVGDNPALAQQLAYLQNAVGGVLDPFSSFLTLRGIRTLALRMERHSASALKIAQRLAQHPQVEKVFFPWLESHPQYALARRQMALAGGMISIVVRGDDQRAAQVIKKLRLFTLAESLGGVESLVSQPFSMTHASIPLEQRLANGITPQLIRLSVGIEDAEDLLADLEQALEA
>NC_009778.1|WP_012125424.1|2711788_2713159_-|pyridoxal-phosphate-dependent-enzyme
MSIVDSVTSLIGQTPLLRLAKLDTGPCELLLKLENQNPGGSIKDRVALSMINEAERLGRLAPGGTIIEATAGNTGLGLALIAAQKGYRLILVVPDKMSREKIYHLRALGVDVRLTRSDVNKGHPAYYQDYAQRLADETPGAFYIDQFNNPANPLAHQTTTAPELFAQAEGRIDAIVVGVGSGGTLGGLQAWFREHSPHTEFVLADPAGSILADQVETGRYHEAGSWLVEGIGEDFIPPLAHLEGVRQAFRVTDAAAFAAARDLLKIEGVLAGSSTGTLLAAALRYCRAQTTPKRVVTFACDSGNKYLSKMFNDDWLRQQGLQTRPTVGDLRDYIAFRHDEGAAVTAAPDDSLATVLARMRLYDISQLPVLAQGRVVGIVDEWDLLTFIRGDSQRFLTPVSAAMNREVVTLDKSASERELFEVFERGLVAVITDEMRFLGLITRTDVLNRWRNQLES
>NC_009778.1|WP_012125425.1|2713217_2713391_-|hypothetical-protein
MRKLAKAGVCIRKNGENGSKNASFSHRYFRTTLPLSFFTARTAENIPSSSKDPRMIL
>NC_009778.1|WP_012125426.1|2713494_2714628_+|tRNA-2-selenouridine(34)-synthase-MnmH
MQKDAQRRPDSDDALALITRGVTLIDVRAPVEFAQGAMPGAINLPLMNNDERAAVGTCYKQHGQQAALALGHRLVYGEVREARLNAWRLACERHPEGFLCCARGGMRSYIVQQWLRERGIDYPLVEGGYKRLRQEAMDATDRLSRLPMVLIGGCTGSGKTQLVKALPTGIDLEGLAHHRGSSFGRTLTPQRAQASFENHLAAAMLNHHARWTTLSNPFWVLEDEGKMIGANHLPAVLREQMLQAPVAVVEEPLERRLERLREEYFVQMQAAFQAALGDEAAGWRAYGDYLHHGLYAIRRRLGLARYAELAALQEAALARQQRTGETHAHFAWLAPLLEGYYDPMYRYQLEKKAQQIAFRGDYHQVDAWLRHRYCASR
>NC_009778.1|WP_012125427.1|2714617_2717032_-|ABC-transporter-permease
MTARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQTREFMAGDRTLRSSRAVPQAWLDKAGEEGLAVSRQLSFSTMTFAADRPQLASVKAVDTRYPLYGTLQTRPQGLLPAPGTVLLAPRLMALLGVKPGDPVDVGDATLKVAGEVIQEPDSGFNPFQMAPRLLMNLADVEQTGAVQPGSRLTWRYKFAGEPEALAQYERWLLPQLQPEHRWTGLEEDDSALGKSLQRSQQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAALRRLIVGQWLMVLLLATLTGGAAGLLFEAILMRLLAPVLPAALPEASVWPWLWAVGAMVVISLLVGLRPYRLLLATQPLRVLRRDAVANLWPLKIYLPVMALIVVALLAGLMGGRMLLWAVLAGAVVLTALCGFAGWALLWAMRRLRLRSLALRLAVNRLLRQPWQTLSQLATFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIAPEQRDAVKAFLAEHQIIPQAFYPIVRARLTQINGKATVGNEDEALNRELNLTWQAERPEHNPLTAGRWPPRAGEVSMEEGLAKRLNIAPGDSVTFTGDTQAFTAKVTSLRKVDWESLRPNFFFIFPPGALDGQPQSYLTSFRADKADAMLTQLNREFPTVSVLDIGAILRQIGQVLEQVSRALEVMVVLVTACGVLLLLAQVQVGMHQRRQELVVYRTLGAEKKLLRATLWSEFALLGLVAGLVAAIGAEVALGVLQTRVFDFPWEPDWRLWVMLPLCGALLLSLCGGWLGVRLLKGKALFRQFNG
>NC_009778.1|WP_004385475.1|2717028_2717715_-|ABC-transporter-ATP-binding-protein
MPAENILEVHHLNKSVGQGEHALSILTGVELVVKPGQSIALVGESGSGKSTLLAILAGLDDGTSGEVRLLGEPLHQMDEEARARLRARDVGFVFQSFMLIPTLNALENVELPAMLRGETSKASRQQAQALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPAVLFADEPTGNLDRQTGDRIADLLFSLNRDSGTTLILVTHDPELAARCDRTLRLRDGKLWEEA
>NC_009778.1|WP_004385476.1|2717682_2718312_+|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1
MMNFKNVFRWHFPFLLLALLSFRAAAADTLLVLGDSLSAGYRMAADAAWPALLNDKWQQRDVRVVNASISGDTAQQGLSRLPALLKQHQPRWVLIELGGNDGLRGFPPDTLSATLRKIIEQVKTAGAEPLLMQIRLPANYGRRYNQAFEAIYPELAQSFSIPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAQRLAPLVKHDS
>NC_009778.1|WP_004385477.1|2718340_2719111_+|SDR-family-oxidoreductase
MQKSLLITGCSSGIGLACAHELRRQGFQILAACRKPDDVARMNTLGFIGIELDLDSPQSVEAAAQEVIRLTNNRLYGIFNNGGYGVYGPLSTISRAQMEQQFSTNFFGAHQLTMLLLPAMLPHGEGRIVNTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRYSGVKVSLIEPGPIRTRFTENVNQTQADKPVENPGIAARFTLGPEAVVAKVRHAFESPNPRIRYPVTLVTHAVGILKRLLPTRIMDKILHG
>NC_009778.1|WP_004385478.1|2719169_2720024_+|co-chaperone-YbbN
MSEQNIINLSEANLHQILEQSMTVPVLFYFWSDRSQHCQQLTPVLEKLANQYQGQFILAKVDCDNEQAIAAQFGLRAIPTVYLFSQGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQEAMALMQEGKHLEALPLLKEAWQMSNQASEIGLLLAQAQIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIDLLKQAADTPEIQQLQQQVELHPDDAQLASQLALQLHQVGRNEEALELLFDHLKKDLNAADGQARKMLQEILAALGTGDALASKYRRQLYSLLY
>NC_009778.1|WP_012125430.1|2720133_2721051_+|SPFH/Band-7/PHB-domain-protein
MLFIIPVLIFVALVIVMAGVKIVPQGFQWTVERFGRYTKTLQPGLNLVVPFMDRVGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELIASMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGDRQSAFLQAEARERSAEAEARATKMVSEAIAAGDIQAVNYFVAQKYTDALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELMKESGTERKRP

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Crispr_ID: NC_009778_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_10

2777861-2779720

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTCGCGCGGGGAA	PILER-CR

30 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_009778_10

>merge|NC_009778|10|2777861-2779720|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTCGCGCCGGGAACACTTGATCATCTATCGCGGCGAGGTGCATCACCGCGGTTTATCCCCGCTCGTACGGGGAACACAAAAGCCTACAGGCCGGTCAGGACGCAGGCGGCGGTTTATCCCCGCTCGCGCGGGGAACACGCCAGTATTTGCACGGTGTAGGTAAAAACGTCGCGGTTTATCTCCGCTCGCGCGGGGAACACACGCCTTCGGGCGGGCTGACAAGCGTCGCCGTCGGTTTATCCCCGCTCTCGCGGGGAACACGTCTGGTGTGGCGTAGGGCATGGTTTACTTCCCGGTTTATCCCCGCTCGCGCGGGGAACACGAGCTGCTCAAGTTTAAAACGCCGCGAGGGATCGGTTTATCCCCGCTCGCGCGGGGAACACAATTCAGCTGTTCCGCGCTTAACCCCCGTCCACGGTTTATCCCCGCTCGCGCGGGGAACACCAGCACGCCGCGAACGTCGGGATCGTTAATAGCGGTTTATCCCCGCTCGCGCGGGGAACACTCCTCTTCTACGGCCTGTTGGCTACGGTTATCCGGTTTATCCCCGCTCGCGCGGGGAACAGGCGTCACACGTGCCTGGACGTTGAGAAACTGGCGGTTTATCCCCGCTCGCGCGGGGAACACTGTCTGCGTAGTGCCGGGGATCTGGTTGTAATCGGTTTATCCCCGCTCGCGCGGGGAACACATACGGTAAGCGTCACCAGAGCGTTAAAGAACCGGTTTATCCCCGCTCGCGCGGGAAACACTCGAAATCCCTTCACGCACGTTCGCCACCCTTCGGTTTATCCCCGCTCACGCGGGGAACACGGGGTAAGTAACGACAACGTCCGACCCGTAGTCGGTTTATCCCCGCTCACGCGGGGAACACAGGCGTTTGCACCGGGAACCGCCAGCGCCATACGGTTTATCCCCGCTCGCGCGGGGAACACGAGTTCACACACGCTACCTGGCACGAAATAAACGGTTTATCCCCGCTCGCGCGGGGAACACGATAATATTGCGATCGAGTTGCTCAGGCACCGCGGTTTATCCCCGCTCGCGCGGGGAACTCCGGATCGTCACCACGTGTAAAGCGAAAGTGATCGGTTTATCCCCGCTCGCGCGGGGAACACAGAAATATCACCGAAAACCCCTCCCTCTGCCGCGGTTTATCCCCGCTCGCGCGGGGAACACGTTCGCAGCCCAGCTGCGTCAAGGTGGTGCCGCGGTTTATCCCCGCTCGCGCGGGGAACACAGAAACACCTCTGTTGGTGATAACACGCTGCGCGGTTTATCCCCGCTCGCGCGGGGAATACTTCCAACGTAATTAGTACTGCCCGTGCAATCCCGGTTTATCCCCGCTCGCGCGGGGAATACTCCATCATTTTCACTGCGTTAAACACATTTTCCGGTTTATCCCCGCTCGCGCGGGGAATACGGTTGTGTACGCGTTCTCTCGGAGTCGGTAGGCGGTTTATCCCCGCTCGCGCGGGGAATACGATGCGGTGACAAAGGCTCTGTCTGCTGCGGGCGGTTTATCCCCGCTCGCGCGGGGAACACCCGGGCGCAGGCCGCATGGCGCTTTGCGCGACCGGTTTATCCCCGCTCGCGCGGGGAACACCCAAACTCGATATCGACAGTGATACCGACGCGCGGTTTATCCCCGCTCGCGCGGGGAACACGCGTGATTCCTGTCGTTGCCGTGCAGAAGGGGCGGTTTATCCCCGCTCGCGCGGGGAACACCAAACGCAGGGATCTACCGCCCGAACGATAAACGGTTTATCCCCGCTCGCGCGGGGAACACTTGCACCGGATGCCAAAACGGCGTTAGTGGCGCGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_009778|10|9|2777861-2779720|CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCCGGGAACAC	TTGATCATCTATCGCGGCGAGGTGCATCACCG
CGGTTTATCCCCGCTCGTACGGGGAACAC	AAAAGCCTACAGGCCGGTCAGGACGCAGGCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCAGTATTTGCACGGTGTAGGTAAAAACGTCG
CGGTTTATCTCCGCTCGCGCGGGGAACAC	ACGCCTTCGGGCGGGCTGACAAGCGTCGCCGT
CGGTTTATCCCCGCTCTCGCGGGGAACAC	GTCTGGTGTGGCGTAGGGCATGGTTTACTTCC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GAGCTGCTCAAGTTTAAAACGCCGCGAGGGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AATTCAGCTGTTCCGCGCTTAACCCCCGTCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAGCACGCCGCGAACGTCGGGATCGTTAATAG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTCTTCTACGGCCTGTTGGCTACGGTTATC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGTCACACGTGCCTGGACGTTGAGAAACTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TGTCTGCGTAGTGCCGGGGATCTGGTTGTAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATACGGTAAGCGTCACCAGAGCGTTAAAGAAC
CGGTTTATCCCCGCTCGCGCGGGAAACAC	TCGAAATCCCTTCACGCACGTTCGCCACCCTT
CGGTTTATCCCCGCTCACGCGGGGAACAC	GGGGTAAGTAACGACAACGTCCGACCCGTAGT
CGGTTTATCCCCGCTCACGCGGGGAACAC	AGGCGTTTGCACCGGGAACCGCCAGCGCCATA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GAGTTCACACACGCTACCTGGCACGAAATAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GATAATATTGCGATCGAGTTGCTCAGGCACCG
CGGTTTATCCCCGCTCGCGCGGGGAACTC	CGGATCGTCACCACGTGTAAAGCGAAAGTGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AGAAATATCACCGAAAACCCCTCCCTCTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GTTCGCAGCCCAGCTGCGTCAAGGTGGTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AGAAACACCTCTGTTGGTGATAACACGCTGCG
CGGTTTATCCCCGCTCGCGCGGGGAATAC	TTCCAACGTAATTAGTACTGCCCGTGCAATCC
CGGTTTATCCCCGCTCGCGCGGGGAATAC	TCCATCATTTTCACTGCGTTAAACACATTTTC
CGGTTTATCCCCGCTCGCGCGGGGAATAC	GGTTGTGTACGCGTTCTCTCGGAGTCGGTAGG
CGGTTTATCCCCGCTCGCGCGGGGAATAC	GATGCGGTGACAAAGGCTCTGTCTGCTGCGGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGGGCGCAGGCCGCATGGCGCTTTGCGCGAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCAAACTCGATATCGACAGTGATACCGACGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCGTGATTCCTGTCGTTGCCGTGCAGAAGGGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAAACGCAGGGATCTACCGCCCGAACGATAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TTGCACCGGATGCCAAAACGGCGTTAGTGGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_009778|10|2|2777861-2779720|CRT
CGGTTTATCCCCGCTCGCGCCGGGAACAC	TTGATCATCTATCGCGGCGAGGTGCATCACCG
CGGTTTATCCCCGCTCGTACGGGGAACAC	AAAAGCCTACAGGCCGGTCAGGACGCAGGCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCAGTATTTGCACGGTGTAGGTAAAAACGTCG
CGGTTTATCTCCGCTCGCGCGGGGAACAC	ACGCCTTCGGGCGGGCTGACAAGCGTCGCCGT
CGGTTTATCCCCGCTCTCGCGGGGAACAC	GTCTGGTGTGGCGTAGGGCATGGTTTACTTCC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GAGCTGCTCAAGTTTAAAACGCCGCGAGGGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AATTCAGCTGTTCCGCGCTTAACCCCCGTCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAGCACGCCGCGAACGTCGGGATCGTTAATAG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTCTTCTACGGCCTGTTGGCTACGGTTATC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGTCACACGTGCCTGGACGTTGAGAAACTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TGTCTGCGTAGTGCCGGGGATCTGGTTGTAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATACGGTAAGCGTCACCAGAGCGTTAAAGAAC
CGGTTTATCCCCGCTCGCGCGGGAAACAC	TCGAAATCCCTTCACGCACGTTCGCCACCCTT
CGGTTTATCCCCGCTCACGCGGGGAACAC	GGGGTAAGTAACGACAACGTCCGACCCGTAGT
CGGTTTATCCCCGCTCACGCGGGGAACAC	AGGCGTTTGCACCGGGAACCGCCAGCGCCATA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GAGTTCACACACGCTACCTGGCACGAAATAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GATAATATTGCGATCGAGTTGCTCAGGCACCG
CGGTTTATCCCCGCTCGCGCGGGGAACTC	CGGATCGTCACCACGTGTAAAGCGAAAGTGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AGAAATATCACCGAAAACCCCTCCCTCTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GTTCGCAGCCCAGCTGCGTCAAGGTGGTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	AGAAACACCTCTGTTGGTGATAACACGCTGCG
CGGTTTATCCCCGCTCGCGCGGGGAATAC	TTCCAACGTAATTAGTACTGCCCGTGCAATCC
CGGTTTATCCCCGCTCGCGCGGGGAATAC	TCCATCATTTTCACTGCGTTAAACACATTTTC
CGGTTTATCCCCGCTCGCGCGGGGAATAC	GGTTGTGTACGCGTTCTCTCGGAGTCGGTAGG
CGGTTTATCCCCGCTCGCGCGGGGAATAC	GATGCGGTGACAAAGGCTCTGTCTGCTGCGGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGGGCGCAGGCCGCATGGCGCTTTGCGCGAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCAAACTCGATATCGACAGTGATACCGACGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCGTGATTCCTGTCGTTGCCGTGCAGAAGGGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CAAACGCAGGGATCTACCGCCCGAACGATAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TTGCACCGGATGCCAAAACGGCGTTAGTGGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_009778|10|1|2777983-2779717|PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGCCAGTATTTGCACGGTGTAGGTAAAAACGTCG
CGGTTTATCTCCGCTCGCGCGGGGAA	CACACGCCTTCGGGCGGGCTGACAAGCGTCGCCGT
CGGTTTATCCCCGCTCTCGCGGGGAA	CACGTCTGGTGTGGCGTAGGGCATGGTTTACTTCC
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGAGCTGCTCAAGTTTAAAACGCCGCGAGGGAT
CGGTTTATCCCCGCTCGCGCGGGGAA	CACAATTCAGCTGTTCCGCGCTTAACCCCCGTCCA
CGGTTTATCCCCGCTCGCGCGGGGAA	CACCAGCACGCCGCGAACGTCGGGATCGTTAATAG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACTCCTCTTCTACGGCCTGTTGGCTACGGTTATC
CGGTTTATCCCCGCTCGCGCGGGGAA	CAGGCGTCACACGTGCCTGGACGTTGAGAAACTGG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACTGTCTGCGTAGTGCCGGGGATCTGGTTGTAAT
CGGTTTATCCCCGCTCGCGCGGGGAA	CACATACGGTAAGCGTCACCAGAGCGTTAAAGAAC
CGGTTTATCCCCGCTCGCGCGGGAAA	CACTCGAAATCCCTTCACGCACGTTCGCCACCCTT
CGGTTTATCCCCGCTCACGCGGGGAA	CACGGGGTAAGTAACGACAACGTCCGACCCGTAGT
CGGTTTATCCCCGCTCACGCGGGGAA	CACAGGCGTTTGCACCGGGAACCGCCAGCGCCATA
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGAGTTCACACACGCTACCTGGCACGAAATAAA
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGATAATATTGCGATCGAGTTGCTCAGGCACCG
CGGTTTATCCCCGCTCGCGCGGGGAA	CTCCGGATCGTCACCACGTGTAAAGCGAAAGTGAT
CGGTTTATCCCCGCTCGCGCGGGGAA	CACAGAAATATCACCGAAAACCCCTCCCTCTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGTTCGCAGCCCAGCTGCGTCAAGGTGGTGCCG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACAGAAACACCTCTGTTGGTGATAACACGCTGCG
CGGTTTATCCCCGCTCGCGCGGGGAA	TACTTCCAACGTAATTAGTACTGCCCGTGCAATCC
CGGTTTATCCCCGCTCGCGCGGGGAA	TACTCCATCATTTTCACTGCGTTAAACACATTTTC
CGGTTTATCCCCGCTCGCGCGGGGAA	TACGGTTGTGTACGCGTTCTCTCGGAGTCGGTAGG
CGGTTTATCCCCGCTCGCGCGGGGAA	TACGATGCGGTGACAAAGGCTCTGTCTGCTGCGGG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACCCGGGCGCAGGCCGCATGGCGCTTTGCGCGAC
CGGTTTATCCCCGCTCGCGCGGGGAA	CACCCAAACTCGATATCGACAGTGATACCGACGCG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACGCGTGATTCCTGTCGTTGCCGTGCAGAAGGGG
CGGTTTATCCCCGCTCGCGCGGGGAA	CACCAAACGCAGGGATCTACCGCCCGAACGATAAA
CGGTTTATCCCCGCTCGCGCGGGGAA	CACTTGCACCGGATGCCAAAACGGCGTTAGTGGCG
CGGTTTATCCCCGCTCGCGCGGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012125462.1\|2774258_2775680_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_009778.1\|WP_012125466.1\|2779816_2780110_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_009778.1\|WP_012125468.1\|2781655_2782408_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_009778.1\|WP_004386923.1\|2776273_2776525_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125473.1\|2788869_2789181_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NC_009778.1\|WP_041460589.1\|2784108_2785677_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_009778.1\|WP_157999872.1\|2773412_2773592_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_041460588.1\|2772670_2773498_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_009778.1\|WP_012125457.1\|2769509_2770301_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NC_009778.1\|WP_007781449.1\|2776055_2776277_-\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_041460587.1\|2771121_2772678_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NC_009778.1\|WP_012125458.1\|2770297_2770957_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NC_009778.1\|WP_012125465.1\|2777296_2777755_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NC_009778.1\|WP_041460590.1\|2789212_2789785_-\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668
NC_009778.1\|WP_012125470.1\|2783502_2784108_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_009778.1\|WP_012125469.1\|2782417_2783491_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_009778.1\|WP_007865291.1\|2780109_2781027_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_009778.1\|WP_014729420.1\|2773554_2774172_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NC_009778.1\|WP_012125472.1\|2786030_2788664_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_009778.1\|WP_012125467.1\|2781023_2781674_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012125462.1\|2774258_2775680_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.89367e-95
NC_009778.1\|WP_012125466.1\|2779816_2780110_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.20382e-64
NC_009778.1\|WP_012125468.1\|2781655_2782408_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.95506e-45
NC_009778.1\|WP_041460590.1\|2789212_2789785_-\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	3.91696e-52
NC_009778.1\|WP_012125473.1\|2788869_2789181_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.32753e-49
NC_009778.1\|WP_041460589.1\|2784108_2785677_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.43625e-145
NC_009778.1\|WP_012125472.1\|2786030_2788664_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.73971e-117
NC_009778.1\|WP_041460588.1\|2772670_2773498_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.5246e-15
NC_009778.1\|WP_012125457.1\|2769509_2770301_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	2.73432e-145
NC_009778.1\|WP_041460587.1\|2771121_2772678_+\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NC_009778.1\|WP_012125458.1\|2770297_2770957_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	6.02339e-102
NC_009778.1\|WP_012125465.1\|2777296_2777755_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	1.64564e-08
NC_009778.1\|WP_012125470.1\|2783502_2784108_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.55993e-27
NC_009778.1\|WP_012125469.1\|2782417_2783491_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.54501e-114
NC_009778.1\|WP_007865291.1\|2780109_2781027_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.06072e-155
NC_009778.1\|WP_012125467.1\|2781023_2781674_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.7115e-72
NC_009778.1\|WP_014729420.1\|2773554_2774172_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	1.56449e-36

>NC_009778.1|WP_012125465.1|2777296_2777755_-|DUF3828-domain-containing-protein
MNKTICTLLITAALCSTTAVASDETLEQKPQQAALNFNRWYISGFQNTHQDLLDSKQIRHYVTKTTLEKLRRARPNENEFYDADFFIKAQDILPDWTSHIVITDVEYDPVCTQVYVSFGQNPAHGVIDCMVKEAGIWKVQSVARVPVAKGKP
>NC_009778.1|WP_004386923.1|2776273_2776525_-|hypothetical-protein
MTAAVLNVKIDTDLKEKLRQYAEQHGETLSAATEKLLQKALVLGEEDDVVNSEEIDSQHTEEDVSPLSVKEIKALRKLLKKRK
>NC_009778.1|WP_007781449.1|2776055_2776277_-|hypothetical-protein
MKDASLSTTAATYREACELLRSGYVKHVRLGWDVGSDEFFRIASDWCDAGAKIKKEGDAFVISLKGFPVPRQH
>NC_009778.1|WP_012125462.1|2774258_2775680_+|PLP-dependent-aminotransferase-family-protein
MNHRRTGTASLLRLLGHWQQAHSRLPVYRQLAQALRLIILDGRLPLASRLPGERELAGALGVSRTTIASALGLLRDEGFLISRHGAGSEIALPASASVPTLTGSGGALDLSTAALSAGQEVLAACQRAVAQLPDYLGHTGYDPQGLLRLRETLAARYSARGLPTSPDQVMLVNGAVSGFALVLRLLTGPGDRVVIDNPTYPLAIAAIRGASCRPVSVALASQGWDPDGLAATFAQTSPRLAYLIPDYHNPTGYCMDAATRERIAAAATASRTTLVVDETMVDLWYEEAPPPPLAAFDAQDTVITLGSAGKSFWGGLRLGWIRASTRTIASLIQMRDTLDLGSPLLEQLAVATLIEDAPHFLPPRRTALKARRDACLDAMQRYFPQWRTSLPQGGLSFWVELPRPLATRFAASAEGLGIHLGAGNRFGVEGAFERFLRMPFTLETERLEEAFARLQPLWHQLMETRASTARGLV
>NC_009778.1|WP_014729420.1|2773554_2774172_-|membrane-protein
MWRRLVQLYVGLSLYGVSTAMFVRADLGTDPWNVFHVGLARLLSLNLGAVIIGVGALVLLLWVPLRQKPGLGTISNVIMIGLAADAALAVLPAPSSLALRGGLLVAAVVLNALATGMYIGAGFGAGPRDGLMTGIHARTGWSVRSIRTAIEITVLLAGWAMGGTPGIGTVVYALAIGPLIQLCLPWFLVRRVKPAAPAVAAAEKG
>NC_009778.1|WP_157999872.1|2773412_2773592_-|hypothetical-protein
MPHRPWQPLKKDRSSFCRAALCWVFSPMRNGHVEPCSLTRAASAALEQRSAGLNTVPLF
>NC_009778.1|WP_041460588.1|2772670_2773498_-|GNAT-family-N-acetyltransferase
MSNPAALHARPALHWSSEALASILCRCFDGYLVPFQLDGAAFAYRFAAENVCLNASRVWLAGEQVVALALIARRGWRSRLAAFAIHPDWRGKGVGKTLMMQLLDEAHERGEKSMTLEVIVGNDAGQALYERVGFTCEKTLVGFQAHSPAAFVNTQALMPCDPHDIAQRMAAQAEDLPWLMAPETAQALPGTGFSLDDKAFAIIATGFAQPQLRALWVAPQARREGRARQLLSLLHERFAGLMTPVAVDQRLAPLFEQSGFRIQPVRQYEMRHRLN
>NC_009778.1|WP_041460587.1|2771121_2772678_+|EAL-domain-containing-protein
MTITRRIKIVTGVLLLSVLLPVAFSFWLARHQAEQHFVVELDAYTERTLIRTNDIMQQAKAALAKINSFTGEPCSEAHLQAMRRTSFVFRHVQEVVYLKDMTPVCSSLVGRSASKPLPTPTWVNDENYQIWFSTQNDVGLSIPMVMVAHGPHMVLIDPSSFIDLIPFSAWPINTAIIGLPRNRVLASSGPFDKTVWNMARKSGAQKIEYQGNIYLIHREPRSGIAVVAWASQAPQTAEIRKLQLIWLPAGILISLALAFWLLRLLRRLQSPRYRLQDGIANNELVMHYQPIIRLSNGQPTGAEALIRWPQPDGSMLTPDIFIPLAEQTGLIGPLTRRIVHNVLDDLGDWLRTHPQQHISINISAFDLHDPQFVDMFSQALAQHGVAPHQLALEITERGFADPALSGPIIARLRAAGHKIYIDDFGTGYSSLSYLEDLDVDILKIDKSFVDALEYKTVTPHIIEMAKTLKLEMVAEGVENQSQALWLREHGVQYAQGWLYSKALPAGEFIAWCGRHGVS
>NC_009778.1|WP_012125458.1|2770297_2770957_+|ABC-transporter-permease
MSFEDLWPLLAQGTLETLYMVGLAALFTVLIGLPVGVVLFITRRDGVLPQPQLNSVLGSVINVGRSLPFIVLLIALIPLTRLIIGTTLGSTAAVVPITIGAFPFFARVVENALDEVDRGRAEAIIAMGGNAWHVISKALLPEALPALLSGVTLTVVMLIGFSSMAGVIGGGGLGDLAIRYGYQRFNNEVMAATVLILVALVQGVQTLGDRLVRRLAHRR
>NC_009778.1|WP_012125457.1|2769509_2770301_+|ATP-binding-cassette-domain-containing-protein
MITLDGLSKTYAGEGHPALDDVSLAIPQGAVYGILGRSGAGKSTLLRCLNLLERPTSGRILMNGVDITRLDDRALRQHRQRTAMVFQHFNLLHARTVADNVAVPLEIAGVPRAARRERVAELLALVGLADKADAFPSRLSGGQKQRVGIARALAARPDVLLCDEATSALDPETTASILALLADINRQLGLTIVLITHELEVVKAICDHAALLENGRLVESGRLADLLTAPWSVLRQTLVRDNAAWQAFLRRHGVEERIWCEVA
>NC_009778.1|WP_012125466.1|2779816_2780110_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLELRAGVYVGDVSRRVREMIRHQINELAEEGNVVIAWATNNESGFDFQTFGVNRRIPVDLDGLRLVSFLPLENQ
>NC_009778.1|WP_007865291.1|2780109_2781027_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSFVPLNPIPLNDRTSMIFLQYGHLDVLDGAFVLVDKTGVRTHVPVGAIACIMLEPGTRVSHAAIRLASQVGTLLVWVGEAGVRLYASGQPGGARADKLLYQAKLALDETLRLKVVRKMYELRFGEPPPARRSVEQLRGIEGARVRQTYALLAKRYGVKWNGRRYDPKDWEKGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDAVVPKAFEIAARHPEQPDRDVRLACRDIFRSEKLTGKLIPLIETVLAAGEIEPPQPAADMLPPAIPQADSLAEAGFRSR
>NC_009778.1|WP_012125467.1|2781023_2781674_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKITLPTARLTPERLMEMMARGEYVMHQWLWELFPGVAQRQYLYRRETLQNGFCFYLLSASAPERTHPLFEIQTRPFAPAPDEGTALRFSLRANPVVTRNGKRHDVLMNAKREWQLNQKQGALWTMQEQAALAWLDAQGEKGGFRLSQACVAAYRQQQVVKKRGELIQFSTVDYEGALIVTDPARFIARLHEGIGKCRAFGCGLMLIKPGDGV
>NC_009778.1|WP_012125468.1|2781655_2782408_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MNRYLIFQLQGPMASWGEIAVGEVRHTRALPGRSALLGLLAAALGIRRDDEAALNALNQHYQFIVCAGKSSAWARDYHTVQVPREARKVRYFTRKDELRDAQMLETTLSRRDYYADGYWLVAVAATPGAPYTLEALQTALRAPVFPLYLGRKSHPLGLPLWPHLCEGEAASLLREAQARYGAALSELNPALSALAQFHPHLWWEGEHDGLTADEIQIWRDQPLSRRRWDFDIRTVQQGRLTQEATCISQK
>NC_009778.1|WP_012125469.1|2782417_2783491_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVTIGGASRLRVSSQSLKRAWRTSELFEAALGGYTGTRTARIGREAAEIMLAGGVAQAKAIEWGGAIAACFGKVKSEKDKNRLEKDPLINTETEQLAHVSPKERESVHVLARTLAVEKRAPTVDELNFLRKDAMAVDIALFGRMLASTPEHNIEAACQVAHAFGVGETLMEEDFFTAVDDLRQAAAEDAGAGHIGELGFGSALFYTYLCIDRDRLLENLNGDEQLMAKTLRALGECTLKISPTGKQNSFASRAYASWALAEKSTEQPRSLAAAFWEPVTGHDQLDEAVRRIITLRNNMNNVYGGGATPCAVLYGDKGEGSVAQLLDFISA
>NC_009778.1|WP_012125470.1|2783502_2784108_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSILSQAHRESLLKWHALLNEQQGRRLRASLRRSHTLNEVWLSEGFRSLAARVPTRSNIEGHEWRFCALGIVAALAAHIKTVDTRASFAEQLGHKEGNHAVMSELRFRRLSQARTQEELFRQLRRAVQLLRGVVNLPDLAEGVFRWCKEENERECRAAHRRAPTDYIRVRWALDYYMAGNPTDAPDAENTDLPADSATTQE
>NC_009778.1|WP_041460589.1|2784108_2785677_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSSLITTKWLPVIYRDGTRGKIAPLDLADENILDLILPRPDFQGAAWQFLLGLLQTALAPKDAESWEDIWEDGLTAEAIRNALAPLEKLFEFGPDTPSFMQDFEPLDGESVALALLLPETPGAQTLKLNKDHFIKRGTTEKFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLLELHRYQGERPALWRRLWLNVLPQREGRLPRPASYDAHVFPWLAPTRTSEKASDIITPEQADALQAYWGMPRRIRVDFSTTQPGTCDLCGEPGDALLTSMTVKNYGVNYVGWMHPLTPHRIPKKEGGEMFSVKGQPGGLLWRDWLGLMMESENDNNREQPARIVKIRQQKPLPGAETGLWCFGYDFDNMKARCWYEHHLPFLQLPESQQPFIRQTLSDAARVANLMLSKLRSALKEAWFGEGATVRGDFSFIDIDFWQQTQPRFLELVEAVKADTTGDNRSLLSAWNSDIWRYTRRYFDDHALTNPQERTEFADIMKARKKFFTQAKAKPAAKGARAKKPQEAN
>NC_009778.1|WP_012125472.1|2786030_2788664_-|CRISPR-associated-helicase/endonuclease-Cas3
MSGYLYWGKSRKGENHRGDEYHLLQWHSLDVAACGYVMVMENYFNAASLFATLGIDDRETAATFFAWLLCWHDIGKFARLFQQQYRCDALACGQRDVNDSRHHHTVTGTWLWQNHLGDCVAQGMTGPLSARERKRVLDRWMPAVLGHHGKPVSCENCHNDFLPEDIAAARAFAGAVNALFPAVALPTQWKDDSWREAFPEKSWLVSALTVLADWTGSANLYFPWVAQAMPFEDYWARAVAQAQRALRLLPPASDVAPFTGIETLFPFITRPTPLQQNALEMDIHAKGPHLIILEDVTGAGKTEAALVLAHRLMAAGQARGLYIGLPTMATANAMYARMSQAWLRLYREGSHPSLVLAHSARKLSAGFNASIWVHELLPNDSGDEAAAYEGCAAWFAQSPKKALLAETGVGTLDQAMMAVMAFKHQNLHLLGLNDKVLIADEIHSYDAYMSHVVEKLVETRARYGNATILLSATLSQAQRDRLIAAFYKGLNTTRESPRLGPDDYPWITHLHAQGIDGQRVATRAQVQRRVGIGWMEDDAACFDKIETVAREGGCIGWIRNSVDDAVNSYRELIRRGNIPEENIILFHSRFAFIDRNDKEQKTLEWFGKQNTINRSGKVIISTQVIEQSIDIDLDYLISDLAPVDLLIQRAGRLQRHSRDKQGQLKLTGADERPAPRLDILAPRWEAQPDEKWLTSAMRNTSYVYPAHSRLWLTQRILREQGEIKMPEAARLLIEAVYGEDVEVPEGMKRSEEKALADYYCQRAIASKYEISLDVGYSVESAELWGPDVSTRIGDMTISVSLARETSQGITPYAQGDNAWEMSALRVRKSWWDKHRGEFTLLCGEALSQWCSAQRKPEAVVILLPGGYSAKEGLIGEA
>NC_009778.1|WP_012125473.1|2788869_2789181_+|MGMT-family-protein
MNHHDTFPQRVYQIVAAIPEGCVTTYGEVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGEISLTGPDLQRQRQALLAEGVQVSGKGEIDLARYGWRY
>NC_009778.1|WP_041460590.1|2789212_2789785_-|YbaY-family-lipoprotein
MKLVHMLSGLAVAVALAGCAQDKSADIAVPAPNPNTSGVATKPVIKQPNVSGTVWIRQKVALPSDAVLTVTLSDATQANAPSKVLAQKVVRTEGKQAPFSFVLPFNPSDIQPNARVLLSAAITVKDKLVFITDRVQPAVNEGGTKIDLTLVPVQQTAVPVQSGGGAVTSVPSTSPTQVTPSSAVPAPTTY

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Crispr_ID: NC_009778_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_11

2805938-2807613

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRISPRCasFinder
CTGTTCCCCGCGCGAGCGGGGATAAACCG	PILER-CR

27 spacers

The CRISPR arrays of NC_009778_11

>merge|NC_009778|11|2805938-2807613|CRT,CRISPRCasFinder,PILER-CR
CGGTTTATTACGGCTGGCGGGGGAACGCCAGAGAGCCGAAGCTGTTGCGCTTCATGAGCTCAGTTTATCCCCGCTCGCGCGGGGAACGGCCATCATTTTTAAATGTAAAGTTGGCCGTTATCGGTTTATCCCCGCTCGTGCGGGGAACGGGAGCAGGTGGAGCTGGCCGACGCGCCGGAAGACGGTTTATCCCCGCTCGCGCGGGGAACGGAACACAAACTGACATCATTAAATGTAGACACTCGGTTTATCCCCGCTCGCGCGGGGAACAGCTCGCCGGGTGGCAACTCCTGTGTATTAGAGGCGGTTTATCCCCGCTCGCGCGGGGAACAGCTCACCGGTATATCGTTCAGGCCGAACCAAATCGGTTTATCCCCGCTCGCGCGGGGAACAGTGTGGCCCATAAAGACCTCTTTAAAAGATGCTCGGTTTATCCCCGCTCGCGCGGGGAACAGTGAGAGATAATGACGAACCGTGCGAGGGTCTACGGTTTATCCCCGCTCGCGCGGGGAACAGGGAAGCCGGAGTGGATCGAATCGGCGGTATTACGGTTTATCCCCGCTCGCGCGGGGAACAGGAAGTAGATGCTTTTGCCGCTGGCCCACATTTCGGTTTATCCCCGCTCGCGCGGGGAACAGACCAGCAAGCGCTGTAATGACCTGGTCAGCGGCGGTTTATCCCCGCTCGCGCGGGGAACAGGCGAAAAACTACCGTCACATTCAACGCGCTAGCCGGTTTATCCCCGCTCGCGCGGGGAACAGTTACACTCTCGCGGCGAAAACGGAAGCGTGCGCGGTTTATCCCCGCTCGCGCGGGGAAAAGTGCTTATTTGCTGTCGCCGCTTTCCGAAGTGACGGTTTATCCCCGCTCGCGCGGGGAACAGGAGGAATGCATAAGCGTTAGGGTTGCTAAGCGCGGTTTATCCCCGCTCGCGCGGGGAACAGGATGCACTGAATCGGGTCTATTTCGTAAATCTCGGTTTATCCCCGCTCGCGCGGGGAACGGCCGCGTACTGAATGAAACCCCCGCCACCGACGCGGTTTATCCCCGCTCGCGCGGGGAACAGTCGGCGTCGGTTTTGCCGTCAGTAGGCTTACCCGGTTTATCCCCGCTCGCGCGGGGAACAGTTCGCCGCTCTTACCTCTTCGCTTAACTGTAACGGTTTATCCCCGCTCGCGCGGGGAACAGCCCTGGTTCTGGCGCTCAACCTCGGCAGCACGCGGTTTATCCCCGCTCGCGCGGGGAACAGCCTGTAAGGTGCTGCGGGAGCAGCTGGGGAAACGGTTTATCCCCGCTCGCGCGGGGAACAGTCACCTATGCCCGCCGCCGATATGGAATCCGGCGGTTTATCCCCGCTCGCGCGGGGAACAGCCCTAATCCGATTAAACCCGCGCCACCCGCCACGGTTTATCCCCGCTCGCGCGGGGAACAGACAGGTAATCACGTACCGCGCCGTCAGCGACGCGGTTTATCCCCGCTCGCGCGGGGAACAGCACGCCAAGCCTGGTGCCACTAACCGTACCGGCGGTTTATCCCCGCTCGCGCGGGGAACAGGGAGAGTGGGGAACGCCAGGTGAGCTACATCACGGTTTATCCCCGCTCGCGCGGGGAACAGTCGGCAACGACGGACGGCGCAACGCCGTTTACCGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_009778|11|3|2805938-2807613|CRT
CGGTTTATTACGGCTGGCGGGGGAACGCC	AGAGAGCCGAAGCTGTTGCGCTTCATGAGCT
CAGTTTATCCCCGCTCGCGCGGGGAACGG	CCATCATTTTTAAATGTAAAGTTGGCCGTTAT
CGGTTTATCCCCGCTCGTGCGGGGAACGG	GAGCAGGTGGAGCTGGCCGACGCGCCGGAAGA
CGGTTTATCCCCGCTCGCGCGGGGAACGG	AACACAAACTGACATCATTAAATGTAGACACT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCGCCGGGTGGCAACTCCTGTGTATTAGAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCACCGGTATATCGTTCAGGCCGAACCAAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTGGCCCATAAAGACCTCTTTAAAAGATGCT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGAGAGATAATGACGAACCGTGCGAGGGTCTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAAGCCGGAGTGGATCGAATCGGCGGTATTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAAGTAGATGCTTTTGCCGCTGGCCCACATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACCAGCAAGCGCTGTAATGACCTGGTCAGCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGAAAAACTACCGTCACATTCAACGCGCTAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTACACTCTCGCGGCGAAAACGGAAGCGTGCG
CGGTTTATCCCCGCTCGCGCGGGGAAAAG	TGCTTATTTGCTGTCGCCGCTTTCCGAAGTGA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAGGAATGCATAAGCGTTAGGGTTGCTAAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GATGCACTGAATCGGGTCTATTTCGTAAATCT
CGGTTTATCCCCGCTCGCGCGGGGAACGG	CCGCGTACTGAATGAAACCCCCGCCACCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCGTCGGTTTTGCCGTCAGTAGGCTTACC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCGCCGCTCTTACCTCTTCGCTTAACTGTAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTGGTTCTGGCGCTCAACCTCGGCAGCACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCTGTAAGGTGCTGCGGGAGCAGCTGGGGAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCACCTATGCCCGCCGCCGATATGGAATCCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTAATCCGATTAAACCCGCGCCACCCGCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACAGGTAATCACGTACCGCGCCGTCAGCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CACGCCAAGCCTGGTGCCACTAACCGTACCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAGAGTGGGGAACGCCAGGTGAGCTACATCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCAACGACGGACGGCGCAACGCCGTTTAC
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_009778|11|10|2805998-2807613|CRISPRCasFinder
CAGTTTATCCCCGCTCGCGCGGGGAACGG	CCATCATTTTTAAATGTAAAGTTGGCCGTTAT
CGGTTTATCCCCGCTCGTGCGGGGAACGG	GAGCAGGTGGAGCTGGCCGACGCGCCGGAAGA
CGGTTTATCCCCGCTCGCGCGGGGAACGG	AACACAAACTGACATCATTAAATGTAGACACT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCGCCGGGTGGCAACTCCTGTGTATTAGAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCACCGGTATATCGTTCAGGCCGAACCAAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTGGCCCATAAAGACCTCTTTAAAAGATGCT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGAGAGATAATGACGAACCGTGCGAGGGTCTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAAGCCGGAGTGGATCGAATCGGCGGTATTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAAGTAGATGCTTTTGCCGCTGGCCCACATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACCAGCAAGCGCTGTAATGACCTGGTCAGCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGAAAAACTACCGTCACATTCAACGCGCTAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTACACTCTCGCGGCGAAAACGGAAGCGTGCG
CGGTTTATCCCCGCTCGCGCGGGGAAAAG	TGCTTATTTGCTGTCGCCGCTTTCCGAAGTGA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAGGAATGCATAAGCGTTAGGGTTGCTAAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GATGCACTGAATCGGGTCTATTTCGTAAATCT
CGGTTTATCCCCGCTCGCGCGGGGAACGG	CCGCGTACTGAATGAAACCCCCGCCACCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCGTCGGTTTTGCCGTCAGTAGGCTTACC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCGCCGCTCTTACCTCTTCGCTTAACTGTAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTGGTTCTGGCGCTCAACCTCGGCAGCACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCTGTAAGGTGCTGCGGGAGCAGCTGGGGAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCACCTATGCCCGCCGCCGATATGGAATCCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTAATCCGATTAAACCCGCGCCACCCGCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACAGGTAATCACGTACCGCGCCGTCAGCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CACGCCAAGCCTGGTGCCACTAACCGTACCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAGAGTGGGGAACGCCAGGTGAGCTACATCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCAACGACGGACGGCGCAACGCCGTTTAC
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_009778|11|2|2806059-2807613|PILER-CR
CGGTTTATCCCCGCTCGTGCGGGGAACGG	GAGCAGGTGGAGCTGGCCGACGCGCCGGAAGA
CGGTTTATCCCCGCTCGCGCGGGGAACGG	AACACAAACTGACATCATTAAATGTAGACACT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCGCCGGGTGGCAACTCCTGTGTATTAGAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CTCACCGGTATATCGTTCAGGCCGAACCAAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTGGCCCATAAAGACCTCTTTAAAAGATGCT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGAGAGATAATGACGAACCGTGCGAGGGTCTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAAGCCGGAGTGGATCGAATCGGCGGTATTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAAGTAGATGCTTTTGCCGCTGGCCCACATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACCAGCAAGCGCTGTAATGACCTGGTCAGCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GCGAAAAACTACCGTCACATTCAACGCGCTAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTACACTCTCGCGGCGAAAACGGAAGCGTGCG
CGGTTTATCCCCGCTCGCGCGGGGAAAAG	TGCTTATTTGCTGTCGCCGCTTTCCGAAGTGA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GAGGAATGCATAAGCGTTAGGGTTGCTAAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GATGCACTGAATCGGGTCTATTTCGTAAATCT
CGGTTTATCCCCGCTCGCGCGGGGAACGG	CCGCGTACTGAATGAAACCCCCGCCACCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCGTCGGTTTTGCCGTCAGTAGGCTTACC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCGCCGCTCTTACCTCTTCGCTTAACTGTAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTGGTTCTGGCGCTCAACCTCGGCAGCACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCTGTAAGGTGCTGCGGGAGCAGCTGGGGAAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCACCTATGCCCGCCGCCGATATGGAATCCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CCCTAATCCGATTAAACCCGCGCCACCCGCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ACAGGTAATCACGTACCGCGCCGTCAGCGACG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CACGCCAAGCCTGGTGCCACTAACCGTACCGG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGAGAGTGGGGAACGCCAGGTGAGCTACATCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TCGGCAACGACGGACGGCGCAACGCCGTTTAC
CGGTTTATCCCCGCTCGCGCGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004387729.1\|2813979_2815254_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NC_009778.1\|WP_012125477.1\|2793028_2794807_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733
NC_009778.1\|WP_004387730.1\|2815377_2816001_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_009778.1\|WP_029464267.1\|2804986_2805823_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NC_009778.1\|WP_007847954.1\|2801034_2801589_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_007902862.1\|2807826_2808225_-\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|129161
NC_009778.1\|WP_004387733.1\|2817950_2818268_-\|transcriptional-regulator-BolA	unknown	unknown	gnl\|CDD\|183243
NC_009778.1\|WP_007865247.1\|2798650_2799088_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125483.1\|2801628_2802447_-\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NC_009778.1\|WP_012125480.1\|2796632_2797094_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_009778.1\|WP_012125481.1\|2797209_2798256_+\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NC_009778.1\|WP_004387731.1\|2816301_2817600_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_009778.1\|WP_004387734.1\|2818566_2819145_+\|lipoprotein	unknown	unknown	gnl\|CDD\|183242
NC_009778.1\|WP_012125485.1\|2804298_2804994_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NC_009778.1\|WP_041460591.1\|2794799_2796575_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NC_009778.1\|WP_004387725.1\|2808348_2808717_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|129520
NC_009778.1\|WP_004387728.1\|2811438_2813793_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|182730
NC_009778.1\|WP_012125487.1\|2808863_2810741_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NC_009778.1\|WP_004387727.1\|2810956_2811229_-\|DNA-binding-protein-HU-beta	unknown	unknown	gnl\|CDD\|259853
NC_009778.1\|WP_012125484.1\|2802538_2804269_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004387729.1\|2813979_2815254_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_009778.1\|WP_012125477.1\|2793028_2794807_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0
NC_009778.1\|WP_004387730.1\|2815377_2816001_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.88422e-159
NC_009778.1\|WP_029464267.1\|2804986_2805823_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.86558e-122
NC_009778.1\|WP_007902862.1\|2807826_2808225_-\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|129161	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General].	1.82463e-45
NC_009778.1\|WP_004387733.1\|2817950_2818268_-\|transcriptional-regulator-BolA	gnl\|CDD\|183243	PRK11628, PRK11628, transcriptional regulator BolA; Provisional.	2.56413e-75
NC_009778.1\|WP_012125483.1\|2801628_2802447_-\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	0
NC_009778.1\|WP_012125480.1\|2796632_2797094_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.15475e-50
NC_009778.1\|WP_012125481.1\|2797209_2798256_+\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.96977e-108
NC_009778.1\|WP_004387731.1\|2816301_2817600_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NC_009778.1\|WP_004387734.1\|2818566_2819145_+\|lipoprotein	gnl\|CDD\|183242	PRK11627, PRK11627, hypothetical protein; Provisional.	3.11964e-134
NC_009778.1\|WP_012125485.1\|2804298_2804994_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NC_009778.1\|WP_041460591.1\|2794799_2796575_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NC_009778.1\|WP_004387725.1\|2808348_2808717_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|129520	TIGR00426, Hypothetical_protein_ybaV_precursor., competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation].	9.03826e-27
NC_009778.1\|WP_004387728.1\|2811438_2813793_-\|endopeptidase-La	gnl\|CDD\|182730	PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional.	0
NC_009778.1\|WP_012125487.1\|2808863_2810741_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	0
NC_009778.1\|WP_004387727.1\|2810956_2811229_-\|DNA-binding-protein-HU-beta	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	3.94727e-45
NC_009778.1\|WP_012125484.1\|2802538_2804269_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0

>NC_009778.1|WP_029464267.1|2804986_2805823_-|MBL-fold-metallo-hydrolase
MRVHHLNCGCMCPLGGALYDGFSKGLHAHLICHCLLIETDHHGLVLVDTGFGCDDMRHPRRRLPLFFRALNNIQYRESLTALHHIKALGFKPEDVRHIVLTHLDFDHAGGLSDFPQAQVHLMQREMTAAEGRGTWLDSARYRPGQWGNRSGWHGYHPHGEAWFGFSAVRALDGLPPEILLIPLPGHTEGHAGVAIDTPQGWLLHGGDAWFYRDEMAADPHCTPGLRFYQWMMQKDKAARLANQKRLRLLAADASAGVTLFCSHDAREFERLSGKNLAI
>NC_009778.1|WP_012125485.1|2804298_2804994_+|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLIQALHQYDEVHCVTFDYGQRHRAEIDVASALAASLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYDPDAEGLPSTFVPGRNILFLTLASIYAYQVQAEAVITGVCETDFSGYPDCRDEFVKALNHAVALGMARDVRFETPLMWLNKAETWALADYWGKLDVIRHQTLTCYNGIQGDGCGECAACHLRANGLSQYEADKPAIMAAMKQKTGLK
>NC_009778.1|WP_012125484.1|2802538_2804269_+|SgrR-family-transcriptional-regulator
MRLLNRLNQFQRLWQPSEGAPQAVTISELAVRCFCSERHMRTLLRQLEQHGWLRWRAQSGRGKRGELIFLVSPHTVRAGMMETVLSQGQTHNALALAQLASGQLRQLLHPFLGGQWHNDTPTLRIPYYRPLEPLKPGFLPGRAEQHLARQIFSGLTRFNPDTARPEGDLAHHWRVSPDGLSWWFYLRPTLHWHNHEPVDAWQLRQRLQQLLELETLRQLFASVREITVEHKHCLRFELTRPDHWLAWRLASHGCYLAHPDDTTIGSGPFRLATFTPELVRIESHDRCHLGHPLLNAVEYWITPGLFDSALGTSCRHPVQIAIGQQEELVHLRPVSNSISLGFCYLGIRQNGQLSHAQARWLMQRVHRSGMIDSLPLDEHLITPSSELLPGWHLPQWPDEPPPPLPPSLTLVYHLPVELPVMARQLQHELAQRGCTLTLHFHNAKNWDGCTQLAQADIVMGDRLIGEAPEYTLEQWLRCDPLWRHLLTGPQRAHLEATLDAVQSHPDEQSRHAALREVWQTLMHDAVITPLFNYRYQISAPPGVNGIELNALGWFDFSRAWLPPPQEAGGRDGAALP
>NC_009778.1|WP_012125483.1|2801628_2802447_-|HMP-PP-phosphatase
MARLGAFDMDGTLLMPDHQLGEATQMALHRLHQRGVTLAFATGRHLLEMRQMLQKIALEAFLITGNGTRIHAPSGELLFAEDLSPQVAEAVLHGYWDTSASLHVFNDSGWLTDNDDPALLDAHAWSGFRYQLTDLKRLPAHQVTKICFVADHDALCELRVKLCQTLGSQAHICFSALDCLEVLPPGCNKGAALQALSQHLGITMADCMAFGDAMNDREMLSLAGKGLIMGNAMPQLLAELPHLPVIGHCSRQAVAHYLTHWLDHPHLDYSPE
>NC_009778.1|WP_007847954.1|2801034_2801589_+|hypothetical-protein
MFSRLVQKSMDQMADLGIKTNLPILLAGIKDGLAQKVAVEPKTLLSLHESMLKELSSREEKKYQAGIDQLEKATAKKKLLKRNKSLFFVQAKAGKKAIAPGETVNVTFKEATYEGRVINNNANVPVTYDENLPYIFQQALELGKRGGVMEVYCFAGDLYNPDTMPPDLFNYSLMKLTVTISGGK
>NC_009778.1|WP_007865247.1|2798650_2799088_+|hypothetical-protein
MLDKKILYIAAMMMSLSACTTAPKSAPVKSNVSQTPVVPAQPAPTPVESMNQLAPVSSDTKLRLERCLAETKHLSDINREKYREQIDTLYRSIKATQYYASISNDLSNIMVETITPLYQFRVNDACNTISQSLLAELKKGAGLAK
>NC_009778.1|WP_012125481.1|2797209_2798256_+|PLP-dependent-cysteine-synthase-family-protein
MSSTWVHHAINEIHADARRSADTHLIRFTLPAFPGIWFYLKDESTHPTGSLKHRLARSLFLYGLSNGWIREGTPIIEASSGSTAVSEAWFARMLGLPFIAVMPACTARRKVEQIEFYGGRCHFVQSACEIYEASEVLARELRGRYMDQFTYAERATDWRGNNNIADSIFRQMAGEPHPVPDYIVMSAGTGGTSATIGRYLRYQGHATRLMVVDPENSVFYDYWQQRDSGLKNNVGSRIEGIGRPRVEPSFIPDVIDEMLQVPDAASVAAMQWLSELLGRKVGASTGTNMWGALQLAARMREEGRCGAIVTLLCDSGERYLETYHNPEWVAASIDDISPWRAAIQELVG
>NC_009778.1|WP_012125480.1|2796632_2797094_-|Lrp/AsnC-family-transcriptional-regulator
MLDKIDCRLLALLQEDATLSLQALADAVNLTTTPCWKRLRRLEDDGYIIKRVALLDPEKLGLGLTAFMLIKTQHHSSDWYSQFVAVVEEMPEVLGFWRMAGEYDYLMRVKVADMKSYDDFYKRLVNRVPGLSDVTSSFAMEQIKYTTALPLKR
>NC_009778.1|WP_041460591.1|2794799_2796575_-|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQLSWYFSREWRRYLGAVALLIVIAILQLVPPKVVGYVVDGVTQHHYTTRQVLLWVGLLVVIAVVVYLLRYVWRVLLFGASYQLAVELRRDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLVIMCTQISWQLTLLALLPMPVMAIVIKRYGDQLHHRFKAAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFSEDARDTGVKNLRVARVDARFDPTIYIAIGMANLLAIGGGSWMVMNGTLTLGQLTSFTMYLGLMIWPMLALAWMFNIVERGSAAYSRIRALLAEAPVVKDGQASLPAGRGVLNVAIREFRYPHAARDTLRNVQFTLKPGQMLGLCGPTGAGKTSVLSLIQRHFDLDAGEITFHDVSLDRVHLDDWRGRLAVVNQTPFLFSDTVASNIALGKPDATQEEIEQAAKLACVHDDILRLPQGYDTQVGERGVMLSGGQKQRISIARALLLEAEILVLDDALSAVDGRTEHQILHNLRQWGENRTVIISAHRLSALTEASEILVLQHGQVAQRGRHESLAAQPGWYRDMYRYQQLEAALDDAPEENDEEALNA
>NC_009778.1|WP_012125477.1|2793028_2794807_-|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MRNTVKSWPTLKRLLAYGSPWRKPLGGAVLMLWVAAAAEVTGPALISYFIDNLVAKNQLPLGLVAGLAFAYVLLQILAAGLHYWQALLFNQAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAITIFPAVLIVMMIYQRYSTPIVRRVRTYLADINDGFNEVISGMNVIQQFRQQTRFGERMNAASHSHYLARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFTAIGTIQVGVLYAFISYLGRLNEPLIELTTQQSILQQALVAGERVFELMDRPRQDYGHDDRPLTSGAIEVDNVSFAYRDDQLVLKDISLSVPSRHFVALVGHTGSGKSTLASLLMGYYPLSSGEIRLDGRPLASLSHGVLRKGVAMVQQDPVVLADSFFANVTLGRDIDEARVWEVLETVQLAELARGMSEGIHTRLGEQGNNLSVGQKQLLALARVLVDAPQILILDEATANIDSGTEQAIQHALAAIRPHTTLVVIAHRLSTIVEADTILVLHRGQAVERGSHQALLEARGRYWQMYQLQLAGEELQAAAKEEPLSA
>NC_009778.1|WP_007902862.1|2807826_2808225_-|YbgC/FadM-family-acyl-CoA-thioesterase
MQTQIKVRGYHMDVYQHVNNARYLEFLEEARWDGLENDESFKWMMANNIAFIVANININYRRPAVLGDLLTVTSQVKQLNGKSGVLSQVITLEPEGEVVADALITFVCIDLKTQKALPIEGELREKLEKITG
>NC_009778.1|WP_004387725.1|2808348_2808717_-|helix-hairpin-helix-domain-containing-protein
MKRGIKALCLAVALAGGTFCTAAIAAPSAGKTQAEPVKEKTAATTPQAKPETTADAPEETVSINTATADELAQAMNGVGKKKAQSIVSYREEYGPFKSIEDLKQVPGMGNSLVERNLSRIRL
>NC_009778.1|WP_012125487.1|2808863_2810741_-|peptidylprolyl-isomerase
MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIGGNSNYAAKVNDQEISRAQLENAVNIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQSIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKLDAAALAENASEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFATLAKEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKEKGQLSDVIKSSVGFLIVRLDDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAANNDNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEEAQNLLSALKAGKGDEALKAAGIAFSPVKTFERTTQDTLTQPVFALPLPAKDKPSYGIGNDMQGNVVLLALDEVRSGTMPDAQKKAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDAGAPPQQ
>NC_009778.1|WP_004387727.1|2810956_2811229_-|DNA-binding-protein-HU-beta
MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN
>NC_009778.1|WP_004387728.1|2811438_2813793_-|endopeptidase-La
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDNDKKVMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDNGDHFAAKAEYLESPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLSDKQSVLEMSDINERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKENEINVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKRIEITGENLKDFLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINSDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPDENKRDLEEIPENVIADLDIHPVKRIEEVLTLALQNAPYGMQVATAK
>NC_009778.1|WP_004387729.1|2813979_2815254_-|ATP-dependent-protease-ATP-binding-subunit-ClpX
MTDKRKDSSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAIAKKAMSRKTGARGLRSIVEAALLETMYDLPSMEEVEKVVIDESVIAGQSEPLLIYGKPEAQQASGE
>NC_009778.1|WP_004387730.1|2815377_2816001_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYSDERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEAVEYGLVDSIMTHRN
>NC_009778.1|WP_004387731.1|2816301_2817600_-|trigger-factor
MQVSVETTQGLGRRVTITIAADSIENAVKSELVNVAKKVRIDGFRKGKVPMNVVAQRYGASVRQDVLGDLMSRHFVDAIIKEKINPAGAPNYVPGEYKLGEDFTYAVEFEVYPEVELKGLESIEVEKPVVEVTDADVDTMLDTLRKQQATWKDKDGAADAEDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEEGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRIKSQAIEGLVNANNIDVPAALIDGEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTHELKADEDRVKALIEEMASAYEDPSEVIEFYSKNNELMDNMRNVALEEQAVEAVLAKAKVTEKPTSFNELMNQQA
>NC_009778.1|WP_004387733.1|2817950_2818268_-|transcriptional-regulator-BolA
MMIREQIEEKLKAAFEPVFLDVVDESYRHNVPAGSESHFKVVLVSDRFVGERFLNRHRLIYGILSEELASTVHALALHTYTLKEWEGLQDTVLPSPACRGAGTLA
>NC_009778.1|WP_004387734.1|2818566_2819145_+|lipoprotein
MLKKVLFPLVALFMLAGCATPPTTIEVSPKITLPQQDPSLMGVTVSINGADQRQDQALAKVTRDNQLVTLTASRDLRFLLQEVLEKQMTSRGYMIGPSGAVDLQIIVNQLYADVSQGNVRYNIATKADISIIATAKTGNKMTKNYRASYSVEGAFQASNKNIADAVNSVLSDTIADMAQDTSIHEFIKQNAR

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Crispr_ID: NC_009778_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_12

3033532-3033626

Orphan

Consensus_repeat	Method
CATGTAGGGTGGGTAAGCGGAGCGCACCCACC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_009778_12

>merge|NC_009778|12|3033532-3033626|CRISPRCasFinder
CATGTAGGGTGGGTAAGCGGAGCGCACCCACCAGTCCCGACGACAAAAAGCCTCAACATCAGCCATGTAGGGTGGGTAAGCGGAGCGCACCCACC

>NC_009778|12|11|3033532-3033626|CRISPRCasFinder
CATGTAGGGTGGGTAAGCGGAGCGCACCCACC	AGTCCCGACGACAAAAAGCCTCAACATCAGC
CATGTAGGGTGGGTAAGCGGAGCGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_007864609.1\|3040948_3041680_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NC_009778.1\|WP_012125681.1\|3024216_3025380_+\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|334163
NC_009778.1\|WP_012125688.1\|3037329_3039774_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NC_009778.1\|WP_041460604.1\|3023636_3023990_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_161571848.1\|3041633_3042209_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NC_009778.1\|WP_012125682.1\|3025578_3026832_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_009778.1\|WP_004385348.1\|3029429_3029819_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NC_009778.1\|WP_041460745.1\|3039879_3040650_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|182461
NC_009778.1\|WP_004385350.1\|3031231_3031690_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NC_009778.1\|WP_004385354.1\|3036519_3037101_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NC_009778.1\|WP_004385353.1\|3035663_3036431_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NC_009778.1\|WP_012125687.1\|3033644_3034700_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NC_009778.1\|WP_004385347.1\|3028237_3029308_+\|porin-OmpC	unknown	unknown	gnl\|CDD\|182275
NC_009778.1\|WP_012125679.1\|3022963_3023596_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125690.1\|3042205_3042922_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_009778.1\|WP_004385352.1\|3034955_3035693_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NC_009778.1\|WP_041460605.1\|3029876_3031124_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NC_009778.1\|WP_012125691.1\|3042954_3043710_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|182327
NC_009778.1\|WP_004385346.1\|3026842_3027946_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NC_009778.1\|WP_014729533.1\|3031950_3033408_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_007864609.1\|3040948_3041680_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.93068e-175
NC_009778.1\|WP_012125681.1\|3024216_3025380_+\|phage-integrase-family-protein	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	3.59667e-48
NC_009778.1\|WP_012125688.1\|3037329_3039774_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NC_009778.1\|WP_004385352.1\|3034955_3035693_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.12715e-104
NC_009778.1\|WP_161571848.1\|3041633_3042209_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	1.9823e-113
NC_009778.1\|WP_012125682.1\|3025578_3026832_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_009778.1\|WP_004385348.1\|3029429_3029819_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.95343e-84
NC_009778.1\|WP_041460745.1\|3039879_3040650_+\|amidohydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NC_009778.1\|WP_004385350.1\|3031231_3031690_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	6.48395e-111
NC_009778.1\|WP_004385354.1\|3036519_3037101_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	5.11735e-147
NC_009778.1\|WP_004385353.1\|3035663_3036431_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	7.59709e-142
NC_009778.1\|WP_012125687.1\|3033644_3034700_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NC_009778.1\|WP_004385347.1\|3028237_3029308_+\|porin-OmpC	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	1.33713e-180
NC_009778.1\|WP_012125690.1\|3042205_3042922_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.31912e-12
NC_009778.1\|WP_041460605.1\|3029876_3031124_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NC_009778.1\|WP_012125691.1\|3042954_3043710_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|182327	PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.	0
NC_009778.1\|WP_004385346.1\|3026842_3027946_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NC_009778.1\|WP_014729533.1\|3031950_3033408_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0

>NC_009778.1|WP_014729533.1|3031950_3033408_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLFAERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVVHGPLEVLLTMTEEAGMDGAFGLQAGWLQADILINTDSEEEGEIYMGCAGGIDFISTLPLSREAIPAGFETFKLTLKGLKGGHSGGDIHLGLGNANKLLARFLCGHAQALDLRLVDFNGGTLRNAIPREAFATVAVPAANAGELKTLANTYLDILKNELSVKEKNITVVLEAASTDKAALTAQSRDAFIALLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDEQAEIICLIRSLIDSGKDYVVSMLESLGALAGAKTVAKGSYPGWQPDASSPVMALVRETYQRLFNKTPNIQVIHAGLECGLFKKPYPQMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK
>NC_009778.1|WP_004385350.1|3031231_3031690_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPAEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVIKRAEGDGEGFIVVDDLVDTGGTAVAIREMYPKARFVTIFAKPAGQPLVDDYVIDIPQDTWIEQPWDMGVVFVPPLSGR
>NC_009778.1|WP_041460605.1|3029876_3031124_-|esterase-FrsA
MSQANLSETLFKPRFKYPETSTLVRRIQHAPPPVIQSTLDGKTVPQWYRMINRLMWVWRGVDPREILEVQSRIVLSNAERTDPAHYDTVIGYRGGNWIYEWSKQAMAWQQRAGQETDEAAIGKAWLMASTLYSIAAYPHLKGDTLAEQAQVLANRAYEEAATRLSGELRELSFPIPGGATITGFLHLPKGGQGPFPTVLICGGLDALQSDYFTLFERYFAPLGIAMLTIDMPSVGASSKWTLTQDSSLLHQHVLQALPNLPWVDHTRVAAFGFRFGTNVAVRLAYLEAPRLKAVACLGPMVHQLFSDPARQDQVPEMYMDVLASRLGMYDASDNALRVELNRYSLKTQGLLGRRCPTPMLAGYWKNDIFSPEEESRLIASSSVDGKLLEIPTSPVYSNFDKALHQISGWVNHKLR
>NC_009778.1|WP_004385348.1|3029429_3029819_-|sigma-factor-binding-protein-Crl
MTLPSGHPKSRMIKKFTALGPYIREEQCEGNRFFFDCLAVCVNVKPAPEKREFWGWWMELEAHEDRFTYTWQFGLFDKEGDWTAVPIKDDEVKEKLSQTLRGFHERLRALLASMDLKLEPVTEDLKLSA
>NC_009778.1|WP_004385347.1|3028237_3029308_+|porin-OmpC
MKKSTLALVVMGIVASSAAQAAEIYNKNGNKLDLYGRVKAEHYMSDNDAVDGDQSYIRLGFKGATQINDQLTGFGQWEYQVAANRVEGDSTNSATKTRLAFAGLKFADLGSIDYGRNYGILYDVGSYTDMIPEFGDDAYTKTDNFMTGRTTGVATYRNTDFFGLVDGLKFGLQYQGKNENDSRAASKANGDGYGASVNYALGDSGVSIGGAYTKSNRTLAQRNSTLGKGDNAEAWATGLKYDANNIYLAATYAETRNMTPITGGFANKNQGFEVVAQYQFDFGLRPSIGYVQSKAKDVENGIGDVDLVKYYDVAATYYFNKNMSAFVDYKINQLDDDNKLKINNDDVVALGLVYQF
>NC_009778.1|WP_004385346.1|3026842_3027946_-|glutamate-5-kinase
MSNSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQQHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLTALLDNRIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQQGLFTADPRNNPQAELIQDVYGIDDTLRAIAGDSVSGLGTGGMGTKLQAADVAGRAGIETVIAAGSKPGVINDVIEGLPVGTRFHPQQTPLENRKRWIFGAPPAGEITVDEGAQSAILERGSSLLPKGIKSVTGNFSRGEVIRIRNLEGRDIAHGVSRYNSDALRRIAGHHSQQIDAILGYEYGPVAVHRDDMITQ
>NC_009778.1|WP_012125682.1|3025578_3026832_-|glutamate-5-semialdehyde-dehydrogenase
MLEQMGQAAKAASYQMALLSSREKNRVLEKIADYLEANAEEILLANEQDLLEARRSGLSEALLDRLALNPQRLHAIANDVRQVCQLADPVGQVIDGGLLESGLRIERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAAILRGGKETWRTNAATVKVIQKALEECGLPAAAVQAIESPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIFVDETAEFAPALNIITNAKTQRPSTCNTVETLLVHEAIAERFLPELSRAMHERGVTLHADARALALLSGGPATAVAVKPEAFDDEWLSLDLNVKLVAGIDEAIAHIREHGTQHSDAILTRTLRHADRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGYGDDTIRA
>NC_009778.1|WP_012125681.1|3024216_3025380_+|phage-integrase-family-protein
MSLFRRGETWYASFTLPDGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQMKDITETRIYNAIQKMTNRRHEENWKLREEALRKKGKPVPPYVPRPAATATKATHLSFIKALLRAAEREWKMLDKAPIVKVPQPKNKRIRWLEPHEAKRLIDECPDPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWIHPEQSKSNQAIGVALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKAPTVRKMRYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHAKQIDSIFGDCVPNLSHTEKKEVMNGR
>NC_009778.1|WP_041460604.1|3023636_3023990_+|hypothetical-protein
MSYCRFSSDNWRSDVYCYESAQGYITHVASSRIIGDVPAIPFFFDVPPADFFEAVRKQNEFIESAEREPIGLDHDGDMFIDKTPDEMIDRLIYLSGKGYFVPVSAIESLSEEIKEGA
>NC_009778.1|WP_012125679.1|3022963_3023596_+|hypothetical-protein
MKLIDLLVQELPKHGGWPLDKKHHAFISQDSDGEVWAFPSKPNLNIMKEEWNISHGDGCYVGLLTTIADDFTTSTVTREQYEAELAAEQQPVLDDDGLPPVGCECEAKYRDAANAEWFFFRCVGVDCGVAFGWAGKEAVTLGKGSYEFRPIRSEADRKREIGVIALATACGDVVPFKYGDRYQGGELVGAAWYELYDKIAAGEVAGIRIE
>NC_009778.1|WP_012125687.1|3033644_3034700_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRERRGVISTANYPARKYGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASAHIREIFSRYTSLIEPLSLDEAYLDVTHSPHCYGSATLMAKEIRQTIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPEEVPGFLRTLPLGKIPGVGKVTAAKLESLGLRTCEDVQKSDLAALLKRFGKFGRVLWERSQGIDDREISSDRQRKSVGVERTLAEDIHEWAECEAIVELLYPELERRLAAVQPDLRIARQGVKLKFNDFQLTTQEHVWPKLNKEDLLATARKTWEERRSGRGVRLVGLHVTLLDPQIERQLVLGL
>NC_009778.1|WP_004385352.1|3034955_3035693_+|murein-L,D-transpeptidase
MRKIALLIAMLLVSCFSWASTVSSDSVTPIKKELKQQLMGSPVYIQIFKEERTLELYVKMGEQYQLLDSYRICNYSGGLGPKRRQGDFKSPEGFYSVQRSQLKPDSRFYKAINIGFPNAFDRANGYEGKYLMIHGACVSVGCYAMTDKNIDEIFQFVTGALVFGQPNVQVSIYPFRMTDANMERHKYSYYIGFWKQLKPGYDYFMATRQPPVVSVVNGSYVVSKPLSSSVVHPQLASNYTLPETK
>NC_009778.1|WP_004385353.1|3035663_3036431_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSYNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYRSLDTGPFRPIGETDSEKAFCWLLHKLTTRYPRTPGNMTAVFRYIAELAGELREKGVFNMLLSDGRYVMAFCSTNLFWITRRAPFGVAKLLDQDVEIDFQEETTPNDVVTVIATQPLTGNETWHKIMPGEWALFCLGERVV
>NC_009778.1|WP_004385354.1|3036519_3037101_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGYDHIFSRYVEAVGREGDVLLGISTSGNSGNVIKAIEAARAKGMKVITLTGKDGGKMAGTADVEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVKA
>NC_009778.1|WP_012125688.1|3037329_3039774_+|acyl-CoA-dehydrogenase
MMILSIVATLVLIGALFYHRVSLPLSSLILLAWTAALGAAGLWSLWLLVPLAIILVPLNVTPMRKSLISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFRGNPDWQKLHNYPQPKLTAEEQAFLDGPVEEACRMANDFQITHEMADLPPELWAFLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLAGVSGILAITVGVPNSLGPGELLQHYGTDAQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGEQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPDRLLGGEQELGITCALIPTNTPGVEIGRRHFPLNVPFQNGPTRGKDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGSLKSIALATGAYAHIRRQFKVSIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDIAGGKGIMLGEGNFLARAYQGAPIAITVEGANILTRTMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFRHIGHVGSNLVRSFWLGLTNGLTSRSPTRDATRRYYQHINRLSASLALLSDMSMAVLGGSLKRRERISARLGDVLSQLYLASAVLKRYDDEGRQEADLPLVHWGVQDALHQAEQAISDLLRNFPNGAVAGLLSLAIFPAGRRYDAPSDKLDHKLAKILQTPSATRSRIGRGQYLTPSEHNPVGLLEQALLEVMAADPIHQRICKEMGKNLPFTRLDELAKRALKEGRINEDEAAILIRAEESRLRSINVDDFEPDALATLPVKLPEAVRKVEAA
>NC_009778.1|WP_041460745.1|3039879_3040650_+|amidohydrolase
MSGLKISLMQQPLSWMDGPANLRHFDVLLEKVQGRDLIVLPEMFTTGFAMEAAQSSLPEETVVAWMQEKARQTGAMVAGSAALQSERGPVNRFLLVEPQGAVHRYDKRHLFRMADEHQHYVAGDTRLVVAWRGWRILPLVCYDLRFPVWSRNRDDYDLALYVANWPAPRALHWQALLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGDIIAASEPHQAVRVEAELSLESLREYREKFPAWQDADRFTLE
>NC_009778.1|WP_007864609.1|3040948_3041680_-|DNA-polymerase-III-subunit-epsilon
MSTAITRQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVHGISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSIAFAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCLWRA
>NC_009778.1|WP_161571848.1|3041633_3042209_+|ribonuclease-HI
MVSVSRTICRVIAVLIALVYVRLGFLLTGSLPEMRKQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEALREHCIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKWEWVKGHAGHPENERCDELARAAAMAPTLEDTGYQPEATAS
>NC_009778.1|WP_012125690.1|3042205_3042922_-|class-I-SAM-dependent-methyltransferase
MKPARTPATLSAPAHWDAFSWGDHYRATLERELQPWLGKMYGFHLLKIGNLSAEINTEACAISHQVNVALQGDALHVKCDPLHLPFAAKSVDACLLAHTLPWCPDPHRLLNEADRVLIDDGWLIMTGFNPVSLLGAAKLLPFVRKRAPVNSRMFTMMRQMDWLSLLNFELLYYSRCQVLPWCRQGGKMLTRHLPALGCLQVMVARKRTIPLTINPLMKPRARTHLRPAVGATRQYRKP
>NC_009778.1|WP_012125691.1|3042954_3043710_+|hydroxyacylglutathione-hydrolase
MNLNSIPAFEDNYIWVLNDDEGKCLLVDPGEAEPVFRALEENQWQPVAILLTHHHHDHTGGVKALVARFPDITVYGPEETRSKGAQVVVNDGEKFNILGCEFLAFSTPGHTLGHFSYFSFPYLFCGDTMFSAGCGRLFEGTPAQMYQSFQKINALPEDTLICCAHEYTLSNLKFLVAILPDDPALTQYYREVNELRAKNQKTLPSILKNERQINLYLRLEDDDLIDKINPDLRLSTPEERFAWLRSKKDNF

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Crispr_ID: NC_009778_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_13

3070562-3070683

Orphan

Consensus_repeat	Method
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_13

>merge|NC_009778|13|3070562-3070683|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACCTGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATCAGTCAAACTCCAGTTCCACCTGCTCTGAACC

>NC_009778|13|12|3070562-3070683|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	TGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATC
AGTCAAACTCCAGTTCCACCTGCTCTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004386134.1\|3083586_3084345_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182326
NC_009778.1\|WP_012125708.1\|3074755_3075898_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NC_009778.1\|WP_012125704.1\|3065381_3067520_-\|lysine-decarboxylase-LdcC	unknown	unknown	gnl\|CDD\|185297
NC_009778.1\|WP_007759960.1\|3064934_3065324_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|183156
NC_009778.1\|WP_012125702.1\|3063258_3063573_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NC_009778.1\|WP_004385443.1\|3061592_3062015_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_009778.1\|WP_012125703.1\|3063565_3064870_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NC_009778.1\|WP_012125705.1\|3067666_3069424_-\|chitinase	unknown	unknown	gnl\|CDD\|381595
NC_009778.1\|WP_012125712.1\|3081352_3082705_-\|sigma-E-protease-regulator-RseP	unknown	unknown	gnl\|CDD\|182723
NC_009778.1\|WP_007896690.1\|3074162_3074759_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_009778.1\|WP_012125710.1\|3077261_3078287_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NC_009778.1\|WP_004386127.1\|3076689_3077145_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_009778.1\|WP_004386130.1\|3078907_3081322_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NC_009778.1\|WP_007776988.1\|3062950_3063211_+\|Rho-binding-antiterminator	unknown	unknown	gnl\|CDD\|183241
NC_009778.1\|WP_004386129.1\|3078290_3078785_-\|molecular-chaperone-Skp	unknown	unknown	gnl\|CDD\|182724
NC_009778.1\|WP_007790874.1\|3075897_3076686_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_009778.1\|WP_004385445.1\|3062763_3062964_+\|YaeP-family-protein	unknown	unknown	gnl\|CDD\|179901
NC_009778.1\|WP_004386121.1\|3069587_3070547_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_009778.1\|WP_012125701.1\|3062011_3062557_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NC_009778.1\|WP_012125713.1\|3082716_3083574_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004386134.1\|3083586_3084345_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	gnl\|CDD\|182326	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase.	6.29229e-169
NC_009778.1\|WP_012125708.1\|3074755_3075898_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NC_009778.1\|WP_012125704.1\|3065381_3067520_-\|lysine-decarboxylase-LdcC	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
NC_009778.1\|WP_007759960.1\|3064934_3065324_-\|VOC-family-protein	gnl\|CDD\|183156	PRK11478, PRK11478, VOC family protein.	1.35344e-95
NC_009778.1\|WP_012125702.1\|3063258_3063573_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.2887e-30
NC_009778.1\|WP_004385443.1\|3061592_3062015_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	3.62783e-71
NC_009778.1\|WP_012125703.1\|3063565_3064870_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	0
NC_009778.1\|WP_012125705.1\|3067666_3069424_-\|chitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	9.02648e-70
NC_009778.1\|WP_012125712.1\|3081352_3082705_-\|sigma-E-protease-regulator-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	0
NC_009778.1\|WP_007896690.1\|3074162_3074759_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.48787e-115
NC_009778.1\|WP_012125710.1\|3077261_3078287_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	0
NC_009778.1\|WP_004386127.1\|3076689_3077145_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.84423e-93
NC_009778.1\|WP_004386130.1\|3078907_3081322_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NC_009778.1\|WP_007776988.1\|3062950_3063211_+\|Rho-binding-antiterminator	gnl\|CDD\|183241	PRK11625, PRK11625, Rho-binding antiterminator; Provisional.	1.32493e-54
NC_009778.1\|WP_004386129.1\|3078290_3078785_-\|molecular-chaperone-Skp	gnl\|CDD\|182724	PRK10780, PRK10780, molecular chaperone Skp.	6.45707e-82
NC_009778.1\|WP_007790874.1\|3075897_3076686_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	6.58473e-173
NC_009778.1\|WP_004385445.1\|3062763_3062964_+\|YaeP-family-protein	gnl\|CDD\|179901	PRK04964, PRK04964, hypothetical protein; Provisional.	4.322e-34
NC_009778.1\|WP_004386121.1\|3069587_3070547_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NC_009778.1\|WP_012125701.1\|3062011_3062557_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	1.28114e-97
NC_009778.1\|WP_012125713.1\|3082716_3083574_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	0

>NC_009778.1|WP_004386121.1|3069587_3070547_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLKVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSVIPEPLGGAHRNPEAMAQSLKTQLLADLADLDVLSKDDLLNRRYQRLMSYGYA
>NC_009778.1|WP_012125705.1|3067666_3069424_-|chitinase
MEIAKIAAIGAAGVLAGAQALAAPLLSSSTPYTLNASDLTKKEQELTNFPLMQSVKSAIRTLDNAQVEQIAPGRAANPDNVKRVEKILSAQDWEYLFPLRAPEYTYINFLKAVGKFPAVCGSYSDGRDADAICRKSLATMFAHFAQETGGHESWREQPEWRQALVYLREMGWTEGQKGGYNGECNPDTWQGQTWPCGKDKDGDYMSYFGRGAKQLSYNYNYGPFSDAMYGDVRPLLDKPEMVADTWLNLASAIFFFVYPQPPKPGMLHVIDGTWVPNEHDKENGLVPGFGVTIQIINGGVECGGDAENAQSLNRIAYYKEFAKYLKVPVPADEVLGCKKMKQFDAGGAGALPIYWEMDWSWSTTTPDGQAYACQLVGYQTPFSAFKEGDYAKCVQNHFNVNIVNDASGGTTPAPQPEPQPQPSPTPSGNVAPVARISGPVGAVESGSKVSLSATGSSDANGDALTYTWMAQNGQTLSGKDKSVVTFNAPESTSDAQYTISLKVDDGKLSDTTSYILNVKAKTPDAGPVSYPSWTASHSWKPGDIVLNQGALYQCKPFPAGGWCSVAPAYYEPGAGLNWQDAWNAL
>NC_009778.1|WP_012125704.1|3065381_3067520_-|lysine-decarboxylase-LdcC
MNIIAIMGPHGVFYKDEPMKELQAALQQQGFQLIWPKNSNDLLKFIEHNPRICGVIFDWDEYSLDLCCEINQLNEYLPLYAFINTHSTLDVSANEMRMALWFFEYSLGIADDIATRIRQYTQEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIIGMYAAHAGSTVLIDRNCHKSLTHLLMMSDIVPLWLKPTRNALGILGGIPKREFTRESIAQKVAQTPDASWPVHAVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYKGKSGMSGERVPGKVFFETQSTHKMLAALSQASLIHIKGDYDEETFNEAYMMHTTTSPSYPLVASIETAAAMLRGNPGRRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEIDEADCWPITPGDDWHGFTHADRDHMYLDPVKVTILTPGMDAQGNMEKEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLWAEDPDFYRNMRVQELAQGIHKLIQQHDLPDLMLRAFDVLPEMKMTPHEMYQQQVKGNVETVEIEKLIGRVSANMILPYPPGVPLVMPGEMITEDSRAVLDFLLMLCSIGRHYPGFETDIHGAKCGEDGVYRVRVLKSE
>NC_009778.1|WP_007759960.1|3064934_3065324_-|VOC-family-protein
MLGLKQIHHIAIIATDYHRSKAFYCDTLGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVDDVERAVAFLESRGVTCEAVRVDPLTGKRFTFFNDPDGLPLELYQQ
>NC_009778.1|WP_012125703.1|3063565_3064870_-|tRNA-lysidine(34)-synthetase-TilS
MDTSLLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQAHCHRWQVPFELAYVELAQDGLGLEAQARKARYQAFEAALLPGEALVTAQHLNDQCETLLLALKRGSGPAGLAAMPAELPFADSVLLRPLLNTPRAQLEAWASRHQLVWIDDESNEDDRFDRNFLRLHILPALEARWPHFTQAAARSAQLCGEQEQLLDELLTPELAALMDGKTLAIAPLETMSALKRAALLRRWLAALNAAMPSRATLQRLWDEVAQSREDAAPRLKCGDYEARRYQGRLWWVRARQGQRQTVLAWPDPHKALLLPESLGCLRFGEAGDAVRPPRPGETVSVRFSAPGMLYIVGRDRGRTLKKLWQELQVPPWQREITPILFYDEQPICAPGLFITREGQAQNEPGWSLAWHKEHNDD
>NC_009778.1|WP_012125702.1|3063258_3063573_-|cytochrome-c
MIKHGVWLASLMALSVTAQAKGDAAAGEEKAVMCLACHGASGKASAPIYPNLAGQNEAYLEHALQAYKKGERSGGQAEIMKAYVSGLSDEDIANLAAYYAGQKP
>NC_009778.1|WP_007776988.1|3062950_3063211_+|Rho-binding-antiterminator
MSMNDAYQPINCDDYDNLELACQHHLLLTLELKSGEVMKAKAQDLVTRKNVEYLIADEAGAVREVRLDKIASFSHPQIGTVVVSES
>NC_009778.1|WP_004385445.1|3062763_3062964_+|YaeP-family-protein
MDKYCELIRQRYSQIASGELGYIPDALGCVLRALNEVASDEALSESVREQAAYAAANLLVSDYVNE
>NC_009778.1|WP_012125701.1|3062011_3062557_-|YaeQ-family-protein
MALKATIYKAAVNVADLDRQQFLDINLTLARHPSETQERMMLRLLAWMMYADERLQFTRGLCADDEPEIWLRNDHLGIDLWIELGLPEERRLKKAVSQSQQVALFTYNDRAAQIWWQQNQDKLRQYKNLTIWYINDEQLAQLSALAQRTMTLQVTLQEGVIWLSGGEENLELHPTVWQAQA
>NC_009778.1|WP_004385443.1|3061592_3062015_-|aminoacyl-tRNA-hydrolase
MITFSRSVAVPDDEVTFSAIRAQGAGGQHVNKSSTAIHLRFDINASSLPDEWKARLLAASHHLITAEGVVVIKAQEYRSQEMNREAALARLVMLVRELTATQKRRKETRPTRASKVRRLEAKTHKSATKALRGKVRGMPD
>NC_009778.1|WP_007896690.1|3074162_3074759_-|ribonuclease-HII
MMEFIYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLGRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPALPMPSMAVVKGDSRVAEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPVRRALGIAS
>NC_009778.1|WP_012125708.1|3074755_3075898_-|lipid-A-disaccharide-synthase
MTRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTERFTALKPDVFVGIDAPDFNITLEGNLKQQGIRTIHYVSPSVWAWRQKRVFKIGRATNLVLAFLPFEKAFYDKFNVPCRFIGHTMADAMPLDPDKNAARDVLGIAHDARCLALLPGSRSAEVEMLSADFLKTAQRLREHYPDLEIVVPLVNAKRREQFERIKAEVAPELTAHLLDGHAREAMIASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEFVSLPNLLAGRELVKELLQDDCEPQKLADALLPLLADGKQSHEMHDTFRKLHQQIRCNADEQAADAVLELAQ
>NC_009778.1|WP_007790874.1|3075897_3076686_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MIDKTAFIHPTAIVEEGAVIGANAHIGPFCIVGPDVKIGEGTVLKSHVVVNGHTTIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTAQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSKEALHAIRNAYKLLYRSGKTLDEVKPEIAEIAAKHPEVQPFYDFFARSTRGLIR
>NC_009778.1|WP_004386127.1|3076689_3077145_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTTETHTLHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMVMEVTFEKTRRGVTRFKGVALVDGKVVCEATMMCARSREA
>NC_009778.1|WP_012125710.1|3077261_3078287_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MPSIRLADLARQLDAELHGDGDIAITGVASMQSAQEGQITFMVNPRYREQLAHCQASAVVMTEADLPFANSAALVVKNPYLTYARMAQILDTTPQPASSIAPSAVIDASARLGNNVAVGANAVIESGVELGDNVVIGPGCFVGKNSKLGAGTRLWANVSIYHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDEMNKRLKAVERKVTQQD
>NC_009778.1|WP_004386129.1|3078290_3078785_-|molecular-chaperone-Skp
MKKWLFAAGLGLAMAASAQAADKIAVVNMGNLFQQVAQSTGVSKTLENEFKGRAGELQRMETDLQAKMQRLQRDGSTMKASERSKLEKDVMAGRQEFSSKAQQFEQDRARRSNEERGKLVTRIQSAVKKVAADQDIDLVVDANTVAYTSNDVKDITADVLKQVK
>NC_009778.1|WP_004386130.1|3078907_3081322_-|outer-membrane-protein-assembly-factor-BamA
MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFASGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIVGNRAFSTEELISNFQLRDEVPWWNVVGDRKYQKQKLQGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTINVTEGDQYKIAGVEVSGNLAGHSAEIESLTKMQPGELYNGTKVTRMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDSGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDVDTQRVSGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRLGLGYVHNDLSNMEPQVAMWRYLDSLGQSAKTTSDDNGFSADDFTLNYGWTYNHLDRGFFPTSGSRVNLNGKVTIPGSDNEFYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNNIGPKAVYYSGPGLDNCDKAVGGYCSSDDAVGGNAMGVASLEFITPTPFLSEKYANSVRTSLFADAGSVWDTNWKNTAAMRAAGVPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYEGDKAEQFQFNIGKTW
>NC_009778.1|WP_012125712.1|3081352_3082705_-|sigma-E-protease-regulator-RseP
MLSILWNLAAFIIALGVLITVHEFGHFWVARKVGVRVERFSVGFGKALWRRTDRHGTEYVIALIPLGGYVKMLDERVEPVAPERRHEAFNNKSVSQRAAIIAAGPIANFLFAIFAYWLVFMMGVPGLKPVIGEITPNSIAAKAQIEPGTELKAVDGIETPDWDAVRLELVGRIGDKNVTLSIASPGDTATTDKVLDLRQWQFEPDKEDPVTSLGIRPFGPKIEPVLAQVQPKSAASKAGLQAGDRIVKVDGQPLSEWSTFVTMVRDNPARPLAIEIERQGSPLSLTLIPDTKPGNEKAEGFAGVVPKIAPLPDEYKTVRQYGPFNAIAEATEKTWQLMKLTVNMLGKLLTGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSMLLVLLMGLALFNDFSRL
>NC_009778.1|WP_012125713.1|3082716_3083574_-|phosphatidate-cytidylyltransferase
MLKYRLISAFVLIPVVIAALFLLPPMGFAIATLVVCVLAAWEWGQLSGFTSRTQRVWLALLCGLLLALMLFFLPIYQAPISVPLVEGALWASLGWWVVALLLVLFYPNSATFWRHSKALRLVFGLLTIVPFFWGMVALRAWHYEANHYSGALWLLYVMFLVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFIGGLVTAAIISWIYGAWADLNVAPVTLLTCSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTI
>NC_009778.1|WP_004386134.1|3083586_3084345_-|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase
MLSVNLPLSENLPAHGARHVAIIMDGNGRWAKRQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRVIGDISRFNTRLQDRIHKAEALTSQNTGLTLNIAANYGGRWDIIQGVQQLAAQVQEGLLRPDQIDEEMLSKQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTAPGGIDA

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Crispr_ID: NC_009778_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_14

3103168-3103243

Orphan

Consensus_repeat	Method
GGTGGGTAAGCGAAGCGCACCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_14

>merge|NC_009778|14|3103168-3103243|CRISPRCasFinder
GGTGGGTAAGCGAAGCGCACCCACCGTTCACCCACCAAACGCCCCACGTAGGGTGGGTAAGCGCAGCGCACCCACC

>NC_009778|14|13|3103168-3103243|CRISPRCasFinder
GGTGGGTAAGCGAAGCGCACCCACC	GTTCACCCACCAAACGCCCCACGTAG
GGTGGGTAAGCGCAGCGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004386148.1\|3099136_3099757_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NC_009778.1\|WP_012125717.1\|3094453_3095881_-\|serine-endoprotease-DegP	unknown	unknown	gnl\|CDD\|236802
NC_009778.1\|WP_012125718.1\|3096021_3097536_-\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NC_009778.1\|WP_012125722.1\|3103303_3105289_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NC_009778.1\|WP_004386149.1\|3099810_3100155_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NC_009778.1\|WP_012125726.1\|3109493_3112025_-\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544
NC_009778.1\|WP_012125720.1\|3100236_3101640_-\|H(+)/Cl(-)-exchange-transporter-ClcA	unknown	unknown	gnl\|CDD\|235385
NC_009778.1\|WP_001155227.1\|3116052_3116508_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NC_009778.1\|WP_012125728.1\|3116577_3117474_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NC_009778.1\|WP_012125721.1\|3101812_3103093_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NC_009778.1\|WP_041460607.1\|3112128_3114558_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NC_009778.1\|WP_004386143.1\|3093985_3094375_+\|DUF3461-family-protein	unknown	unknown	gnl\|CDD\|184234
NC_009778.1\|WP_012125725.1\|3107026_3109219_-\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NC_009778.1\|WP_007896708.1\|3097628_3098327_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NC_009778.1\|WP_012125723.1\|3105285_3106182_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NC_009778.1\|WP_004386154.1\|3106181_3106979_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NC_009778.1\|WP_004386142.1\|3093051_3093876_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NC_009778.1\|WP_004387646.1\|3115169_3115874_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NC_009778.1\|WP_004387645.1\|3114629_3115160_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|185079
NC_009778.1\|WP_012125719.1\|3098319_3099120_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004386148.1\|3099136_3099757_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	3.04825e-130
NC_009778.1\|WP_012125717.1\|3094453_3095881_-\|serine-endoprotease-DegP	gnl\|CDD\|236802	PRK10942, PRK10942, serine endoprotease DegP.	0
NC_009778.1\|WP_012125718.1\|3096021_3097536_-\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NC_009778.1\|WP_012125722.1\|3103303_3105289_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NC_009778.1\|WP_004386149.1\|3099810_3100155_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	9.42197e-83
NC_009778.1\|WP_012125726.1\|3109493_3112025_-\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0
NC_009778.1\|WP_012125720.1\|3100236_3101640_-\|H(+)/Cl(-)-exchange-transporter-ClcA	gnl\|CDD\|235385	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA.	0
NC_009778.1\|WP_001155227.1\|3116052_3116508_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	2.27024e-91
NC_009778.1\|WP_012125728.1\|3116577_3117474_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	6.09047e-159
NC_009778.1\|WP_012125721.1\|3101812_3103093_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NC_009778.1\|WP_041460607.1\|3112128_3114558_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NC_009778.1\|WP_004386143.1\|3093985_3094375_+\|DUF3461-family-protein	gnl\|CDD\|184234	PRK13677, PRK13677, DUF3461 family protein.	1.34935e-81
NC_009778.1\|WP_012125725.1\|3107026_3109219_-\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NC_009778.1\|WP_007896708.1\|3097628_3098327_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	2.50031e-139
NC_009778.1\|WP_012125723.1\|3105285_3106182_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NC_009778.1\|WP_004386154.1\|3106181_3106979_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NC_009778.1\|WP_004386142.1\|3093051_3093876_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NC_009778.1\|WP_004387646.1\|3115169_3115874_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	4.70082e-135
NC_009778.1\|WP_004387645.1\|3114629_3115160_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|185079	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase.	5.25009e-113
NC_009778.1\|WP_012125719.1\|3098319_3099120_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	3.75424e-165

>NC_009778.1|WP_012125721.1|3101812_3103093_+|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLFAAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDADGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTRRDKIIKFEGCYHGHADHLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVREAFELYPQDIACIIVEPVAGNMNCIPPQPDFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQAYYNVVPDLTCLGKIIGGGMPVGAFGGRREVMEALAPTGPVYQAGTLSGNPIAMAAGFACLSEVAQPGVHSTLDALTTQLAEGLLDAAQEAGVPLVVNHVGGMFGFFFTDADSVTCYHDVVKCDVERFKRFFHLMLEEGVYFAPSAFEAGFMSVAHSEEDINNTIDAARRVFAKL
>NC_009778.1|WP_012125720.1|3100236_3101640_-|H(+)/Cl(-)-exchange-transporter-ClcA
MKSQTIPTRRVRGFRRAAVIRQLLSRDKTPLTILLLASLTGVLAGLAGVAFEKAVAWVTAHRIEGLAQVAHIPWLVWLLAFLFSALLAMVGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFFGGMGTLGAGMVLGREGPMVQMGGNIGRMVLDIFHRPDAEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRTQFHYNLISIKAVFTGVIMSTIVFRIFNGEKSVIEVGQLTDAPVYTLWLYLLLGIIFGAVGPLFNRLVLGMQDVFARIHGGNTTRWVLLGGAIGGACGLLALWEPAAAGGGFGLIPIAAAGNFTVGMLLFIFIARVVTTVFCFSSGAPGGIFAPMLALGTLLGSAFGMACAAWFPQWHLQAGTFAIAGMGALLAASVRAPITGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILARTLAKQEAERQAQADGRNT
>NC_009778.1|WP_004386149.1|3099810_3100155_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLQFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINDGDMTIEKQGVSLVVDPMSLQYLVGGAVDYTEGLEGSRFVVNNPNATSTCGCGSSFSI
>NC_009778.1|WP_004386148.1|3099136_3099757_+|TRIC-cation-channel-family-protein
MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVKDPTDLVVAMVTCLLTIALVRQPRRLPKWVLPVLDAVGLAVFVGIGVNKAFMAGTGPLVAICMGVVTGVGGGIIRDVLAREIPMILRTEIYATACIVGGIVHATAFYTFEVPLEQASMMGMVVTLAIRLAAIRWHLKLPTFALDEKA
>NC_009778.1|WP_012125719.1|3098319_3099120_+|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKRWLTGALVALLVLPAWLFAAPRVITLSPANTELAFAAGITPVAVSAYSDYPDAARQREQVANWQGMNVERIAALKPDLLVAWRGGNPERQINQLKSLGIHVLWLDPQNVAQVADALRALAPYSPTPEKAQAAARELEQRWQALTARYKSQPKKRVFLQFGMRPLFTTSKASIQNEIVAACGGENIFADSPVPWPQVSREQVLARHPEAVVVTGGEKSIAATRQFWQPLQNVPVISINDDWFERAGPRIILAANQLCQALAEVK
>NC_009778.1|WP_007896708.1|3097628_3098327_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKAGIIGAMEEEVTLLRDKIDNRQTLTIAGCEIYTGTLNGVDVALLKSGIGKVSAAMGATLLLEHCKPDVIINTGSAGGLAPSLKVGDIVVSDEVRYHDADVTAFGYEYGQMAGCPAAFKADEKLIAAAQETIEKLNLHAVRGLVVSGDAFINGSVNLAKIRHNFPQAIAVEMEATAIGHVCHNFGVPFVVVRAISDVADQQSHLSFEEFLAVAAKQSSLMVETLLTSLNRG
>NC_009778.1|WP_012125718.1|3096021_3097536_-|dGTPase
MEKIDFRNKINWHRRYRSPQGVKSEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSLEVQQVGRYIAKEVLSRLKEQGLLEAYGLSELTGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFSQRLFPADAENLPVSQDRCTVQTLRLQEGEEALNALRGNVRRDLCHFEGNAQGIRLVHTLLRMNLTWAQVGGILKYSRPAWHHGPVPETHSYLMKKPGFYLSEDQYISRLRKELQLDTYSRFPLAWIMEAADDISYCVADLEDAVEKRIFSVEQLYQHLYDAWGEHAPGDLFNLVVQNAWDKSGTNQLHHSAEDQFFMYLRVNTLNRLAPYAAQRFIDNLPDVFNGSFNHALLEDDSPYSRLLELYKNVAVRHVFNHPDVEQLELQGYRVISGLLDIYSPLLALTLAQFRELVEKESVRSLPIESRLYHKLSSRHRLAYIEAVSHLHPQAADFPVWEYYYRCRLIQDYISGMTDLYAWDEYRKLMAVE
>NC_009778.1|WP_012125717.1|3094453_3095881_-|serine-endoprotease-DegP
MKKTTLAMSALALSLGLALSPASFAAETASAVTSQAMPSLAPMLEKVMPSVVSISVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGPGGADDGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNATTIKVQLSDGRKLDAKIVGKDPRSDIALIQIQDPKNLTAIKLADSDSLRVGDYAVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKSLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLANSSAAKAGVKAGDVIVSLNGKPISSFAALRAQVGTMPVGTKLTLGLLRDGKPVNVDLVLQQSSQTQVDSSSIFSGIEGAEMSNRAGKEKGVVVNSVKAGSPAARIGLKKGDVIVGANQQPVSNIAELRKILDSKPSVLALNIQRGDSSIYLLMQ
>NC_009778.1|WP_004386143.1|3093985_3094375_+|DUF3461-family-protein
MYDNLKSLGITNPDEIDRYSLRQEANNDILKIYFHKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYVIDELDQLCQRDRTEVDLKRKILDDLRHLESVVANKISEIESDLEKLTRNK
>NC_009778.1|WP_004386142.1|3093051_3093876_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MQQLQNVIESAFERRADITPANVDAVTREAVNQVIALLDSGELRVAEKINGEWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFANYDEARFQKEGFRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTKIYDRETGEVFYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKTRGKVGINELLRTID
>NC_009778.1|WP_012125722.1|3103303_3105289_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MRRHHLLFPALLLGLLFALALGLSWANLNAWLPRAQWQEALWRPNIDAIDQMLFHYSLLPRFVVSLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGVTVATLWALPGGVLTAQFAALAGACVVGLLVFGVAWGKRLSPVTLILAGLVVSLYCGAVNQLLVLFHHDQLQSMFLWSTGALNQNDWSVAARLWPQLLAGFLLTLLLLRPLTLMGLDDGVARNLGLALSLARLATLTLAIVISALLVNSVGIIGFIGLFAPLLAKMLGARRLLARLLLASFIGALLLWLSDQFILWLSRVWLEVSTGMATALFGAPLLLWLLPRLRTMSAPAMNAGDTIPAERGHVARWALAGLLLLLGVAALALCFGRDAHGWVWAQGDVLRELLGWRWPRVLAALCAGTMLAAAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLLFVPGDAFGWLLPAGSVGAAATLMIILIAAGRGGFSPHRMLLAGMALSTAFTMLLVMLQASGDPRMAQVITWISGSTYSVTPQQARNSLWVMLILLALTPLCRRWLTVLPLGGETARAVGMALTPTRIVLLLLASALTAAATLTIGPLSFIGLMAPHITRMLGFRRALPQLIIASLLGGMLMMLADWAGRMVMFPYQIPAGLLATFIGAPYFVYLLRKQSR
>NC_009778.1|WP_012125723.1|3105285_3106182_-|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MRDVLSTPFSRRRLMTAMALSPLMWHMAKARAASVDLKRIVALEWLPVEQLIALGVMPYAVADVPNYRLWVDYPPLPDAVIDVGLRTEPNLELLTELKPSLMIWSAGYGPSEAQLKRIAPGMGVTFTDGKAPLAMARQSLLTLAERLGLEKAAHAHLDEFEQFLTQMKARLAGRGQRPLLMMSLLDSRHALTLGTNSLFQPVLDAVKIPNAWQDKTNFWGSAIVGVERLAQFRDADVICFEHGDDQAMRQLAATPLWQAMPFVREGRFQRVPAVWFYGATLSAMRFGRVLENALGGRA
>NC_009778.1|WP_004386154.1|3106181_3106979_-|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQDKISPPDAGFSLKDVTFRVPGRTLLHPLSLTFPAGRVTGLIGHNGSGKSTLLKMLGRHQKPSGGDILLNGEPLAGWNSKAFAREVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAEDRERVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQNSRCLLLDEPTSALDIAHQVDVLALIHRLSQQRGLTVIAVLHDINMAARYCDHLVALRGGEMIAQGSPLELMNGETLKQIYGIPMGILPHPAGLAPVSFVC
>NC_009778.1|WP_012125725.1|3107026_3109219_-|ferrichrome-porin-FhuA
MARSTHTQINTRICRLAVVVATACGGFAASALAADGQKEETITVSAAAAQESAWGPAPTIAAKRSATATKTDTPIEKTPQSVSVVTREEMDTRQPTTVKEALSYSPSVFSTRGSSSTYDVVTIRGFTTSTTVNTNQYLDGMKLQGNNYSEISMDPYFLERVELMRGPTSVLYGNSNPGGIVSMVSKRPTTEPLREVQFKMGSHNLWQTGFDFSDAIDDAGVWSYRLTGLGRSQNAQQEMAKSSRYAIAPSFSWRPDNNTDFTFLSNFQSDPYAGFYGWLPRSGTIVPYYDANGKAHKLPTDFNEGEENNKMSRRQQMVGYSFSHAFDDTFTLRQNLRYTREHTLYRSVYGNAFVAPSTINRAYVRSDEDMNAFSVDTQLQSNFATGAVDHKLLTGVDYSRMRNDINADYGTASPLNMLDPQYGNPDINVNFLYDVINRQEQTGLYVQDQAEWNKWVMTLGGRYDFAKTSTYTRSSGALAEINDQQFTWRGGINYLFDNGVSPYFSYSESFEPVSGSTLGRKPFEPSRGKQYEAGVKYVPKDMPVVLTAAVYQLTKDKNLTADPANNSFSVQGGEIRSRGIELEAKAAVSANVNVTASYSFTDAKYTHDTLFEDKRPAEVPRNMASLWADYTFHDTALSGLTVGAGGRYVGNTVSYYAYGDKQNQPFNVASYTVADAMVKYDLARLGLPGSSVALNVNNLFDREYVSSCYKDYACYWGAERQVTATATFRF
>NC_009778.1|WP_012125726.1|3109493_3112025_-|bifunctional-glycosyl-transferase/transpeptidase
MAGNDREPIGRKGRPTRPAKQKVSRRRLRDEDYDDEYEDDDEEPMPRKVKGKKGKGGKQGGKRRWLWLLLKLFVIFVVLLAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKQEMVKLLEATQYRQVTKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQIRARLEFDGDHLASIENMDSNRNFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPDLLVDTLVATEDRHFYEHDGISVWSIGRAVLANLTAGRAVQGGSTLTQQLVKNLFLTNKRTLWRKANEAYMALIMDARYDKDRILELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASLYNPWRNPKLALERRNLVLRLLQEQKVIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALIKQRKLKDLETAMVVVDRFTGEVRAMVGGANPQFAGYNRAMQARRSIGSLAKPATYLTALSQPNTYRLNTWIADAPISLRQPNGQVWSPQNDDHRFSGQVMLVDALTRSMNVPTVNLGMALGLPAVTDTWKKLGAPENQLHPVPAMLLGALNLTPVEVAQAFQTIASGGNRAQLSVLRSVIAEDGTVLYQSFPQSERAVPAQAAYLTLWTMQQVVQRGTGHALAVKFPKLHLAGKTGTTNNNVDTWFAGIDGREVVITWVGRDNNQPTKLYGASGAMAIYQRYLSNQSPIPLDLTPPEDIVDMGVDDMGNFLCGGGGMRTLPVWTSDPNALCQQSQPVAPSGNPFDQSAPQQPQQQQPQQAPQQEEKSDGVAGWIKDMFGSN
>NC_009778.1|WP_041460607.1|3112128_3114558_-|ATP-dependent-helicase-HrpB
MSSLPVAAVLPELLNALQHAPQVLLCAPTGAGKSTWLPLEILKSGVLDGKIIMLEPRRLAARNVAQRLADLLGEPCGETVGYRMRAESCTGPATRLEVVTEGILTRLLQRDPELSGVSLVILDEFHERSVQADLALALLLDVQQGLREDLKLLIMSATLDNARLQALLPQAPTVVSEGRSFPVERRYQALSAHQRFDEAVAQAVSGLLREEPGSLLLFLPGVGEIQRVQTQLAERVGRDVLLCPLYGALPLAEQRKAILPAPPGFRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDARTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLPKEQAERTAAQAEAEITQSDLSGLLLELLMWGCRDVTDLQWLDLPPAVNLAAARELLTALGALKEGQLTARGRQMAQFGNDPRLAAMLACAEGADAQATAARLSAILEEPPRGAEADLRSAFSRSQGNWQARSAQLMKRLNARGGTPSLSLAPALLACAFSDRIARRRGQEGRYQLANGMGAMLSQDDALTRYEWLIAPLLLQGSNSADARILQALPLDIDALIDECPHLLSQRDSLEWNDEQGTLRAQRRWQVGQLVLKTQPLSKPSEDELHQAMLNGIREKGLSVLNWTPEAEQLRLRLHCAARWLPEQPWPDVSDEALLASLDVWLLPALHGVHSLRALKNINLAQALLHLLDWTQRQRLDSALPAHYTVPTGSRIAIRYHEENPPALAVRIQEMFGEAETPVIAEGRVPLTLELLSPAQRPLQITRDLSAFWRGAWKEVQKEMKGRYPKHVWPDDPANALPTRRTKKYQ
>NC_009778.1|WP_004387645.1|3114629_3115160_+|RNA-2',3'-cyclic-phosphodiesterase
MSDQKRLFFALPLPADLQQQIIEWRAAHFAPDAGRPIAAANLHITLAFLGDVSAQKQRTLSELAGRIQQPGFTLTLDDAGHWPRSQVVWLGSRQPPRGLLQLANLLRAQAARSGCPQSAQPFHPHVTLLRNAQHPVRLPPPGFGWQLPVREFVLYESRFEQGRTRYQPLQRWSLNP
>NC_009778.1|WP_004387646.1|3115169_3115874_+|DNA/RNA-nuclease-SfsA
MEFTPALQPARLIQRYKRFLADVVTPQGETLTLHCPNTGAMTGCATPGDTVWYSTSSVATRKYPHTWELTQTRDGALICVNTLRANTVVKEALQAQRLPALAGYESLKSEVKYGAERSRIDFMLQASDKVNCYIEVKSVTLSEQDSGYFPDAVTARGQKHLRELMSVVEQGDRAVLLFAVLHSAITQVAPARHIDERYAELLSEAQRKGVEVLAWKASLSASEITLTSPLPVRL
>NC_009778.1|WP_001155227.1|3116052_3116508_+|RNA-polymerase-binding-protein-DksA
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG
>NC_009778.1|WP_012125728.1|3116577_3117474_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSVKPYIGRFAPSPSGELHFGSLIAALGSYLQARALKGQWLVRIEDIDPPREVPGAADAILRQLDHYGLHWDGEVLYQSQRHEAYREALAYLREHGLSYYCTCPRSRIQQLGGIYDGHCRALRHGPENAAVRLVQTHPVMAFTDKLRGDITADPALAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQQFGWQAPDYVHLPLVVNPDGNKLSKQNHAPPLPEGDPRPVLVEALAFLNQPVDDDWRALSTETLLRQAVEKWDLSAVPAAAAANPAFSNALR

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Crispr_ID: NC_009778_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_15

3130763-3131511

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

12 spacers

The CRISPR arrays of NC_009778_15

>merge|NC_009778|15|3130763-3131511|CRISPRCasFinder,CRT,PILER-CR
ATATGAGACTGCCTGTACGGCAGTGAACCGGCAGACGTTTACCGCGCTCCAGGCGCAGGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTCCACTACGCGATTGTTAACGACGACTGGGATTTCTAAGCTGCCTGTACGGCAGTGAACCGGCTGCGCCGTGGGAACTGTTCCTCTCGCGCTTTCTAAGCTGCCTGTACGGCAGTGAACCAATCCGCGGTCGCGTTTCAGCGCAGCAGTGCTTTCTAAGCTGCCTGTACGGCAGTGAACCCGGTGCCGCTCACACCCACCCTGAGCACGACTTTCTAAGCTGCCTGTACGGCAGTGAACTCTCCCACGCTGCGCCATAGTCGTTTGTGCCATTTCTAAGCTGCCTGTACGGCAGTGAACATATACATCAGGTAAGCGTTGTCAACTTTCAGTTTCTAAGCTGCCTGTACGGCAGTGAACACAATATGCTCTTTACCGTCTATGGTTTCATTTTTCTAAGCTGCCTGTACGGCAGTGAACTAACAGAGCCGCCGAAATTTTTAGCGGCCTTGCTTTCTAAGCTGCCTGTACGGCAGTGAACCTTTGCAGGGAGGGGGCTGGGCCGGGCGATCCTTTCTAAGCTGCCTGTACGGCAGTGAACCCAGCGGCGCAGTCAACGTGATGGTGATGGACTTTCTAAGCTGCCTGTACGGCAGTGAACTGGGGAAACGCCTCAACGTGAAAGACGGGAGCTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_009778|15|14|3130763-3131511|CRISPRCasFinder
ATATGAGACTGCCTGTACGGCAGTGAAC	CGGCAGACGTTTACCGCGCTCCAGGCGCAGGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCACTACGCGATTGTTAACGACGACTGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGGCTGCGCCGTGGGAACTGTTCCTCTCGCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAATCCGCGGTCGCGTTTCAGCGCAGCAGTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGTGCCGCTCACACCCACCCTGAGCACGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTCCCACGCTGCGCCATAGTCGTTTGTGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATACATCAGGTAAGCGTTGTCAACTTTCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATATGCTCTTTACCGTCTATGGTTTCATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAACAGAGCCGCCGAAATTTTTAGCGGCCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTGCAGGGAGGGGGCTGGGCCGGGCGATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCGGCGCAGTCAACGTGATGGTGATGGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGGAAACGCCTCAACGTGAAAGACGGGAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_009778|15|4|3130763-3131511|CRT
ATATGAGACTGCCTGTACGGCAGTGAAC	CGGCAGACGTTTACCGCGCTCCAGGCGCAGGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCACTACGCGATTGTTAACGACGACTGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGGCTGCGCCGTGGGAACTGTTCCTCTCGCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAATCCGCGGTCGCGTTTCAGCGCAGCAGTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGTGCCGCTCACACCCACCCTGAGCACGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTCCCACGCTGCGCCATAGTCGTTTGTGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATACATCAGGTAAGCGTTGTCAACTTTCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATATGCTCTTTACCGTCTATGGTTTCATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAACAGAGCCGCCGAAATTTTTAGCGGCCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTGCAGGGAGGGGGCTGGGCCGGGCGATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCGGCGCAGTCAACGTGATGGTGATGGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGGAAACGCCTCAACGTGAAAGACGGGAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_009778|15|3|3130823-3131511|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCACTACGCGATTGTTAACGACGACTGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGGCTGCGCCGTGGGAACTGTTCCTCTCGCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAATCCGCGGTCGCGTTTCAGCGCAGCAGTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCGGTGCCGCTCACACCCACCCTGAGCACGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTCCCACGCTGCGCCATAGTCGTTTGTGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATACATCAGGTAAGCGTTGTCAACTTTCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACAATATGCTCTTTACCGTCTATGGTTTCATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAACAGAGCCGCCGAAATTTTTAGCGGCCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTGCAGGGAGGGGGCTGGGCCGGGCGATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCAGCGGCGCAGTCAACGTGATGGTGATGGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGGAAACGCCTCAACGTGAAAGACGGGAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_012125734.1\|3121674_3122922_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NC_009778.1\|WP_041460608.1\|3129114_3130677_-\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810
NC_009778.1\|WP_041460610.1\|3140063_3140858_+\|DUF2950-family-protein	unknown	unknown	gnl\|CDD\|371539
NC_009778.1\|WP_004387656.1\|3124888_3125551_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NC_009778.1\|WP_015386992.1\|3131889_3132237_+\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NC_009778.1\|WP_007896738.1\|3123853_3124780_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_009778.1\|WP_012125743.1\|3140913_3141645_-\|complement-resistance-protein-TraT	unknown	unknown	gnl\|CDD\|184283
NC_009778.1\|WP_015386991.1\|3126335_3128732_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NC_009778.1\|WP_012125741.1\|3138568_3140050_+\|DUF3300-domain-containing-protein	unknown	unknown	gnl\|CDD\|378701
NC_009778.1\|WP_004388373.1\|3141958_3143383_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_009778.1\|WP_004387876.1\|3134598_3134979_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_012125735.1\|3125606_3126143_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
NC_009778.1\|WP_004387874.1\|3133226_3134021_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|235480
NC_009778.1\|WP_004387652.1\|3121249_3121630_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NC_009778.1\|WP_007864424.1\|3132360_3133212_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NC_009778.1\|WP_004387654.1\|3123086_3123857_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NC_009778.1\|WP_012125733.1\|3120297_3121152_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NC_009778.1\|WP_007707680.1\|3134049_3134415_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NC_009778.1\|WP_097597520.1\|3135064_3137662_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_009778.1\|WP_012125732.1\|3119490_3120285_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_012125734.1\|3121674_3122922_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	1.44002e-62
NC_009778.1\|WP_041460608.1\|3129114_3130677_-\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0
NC_009778.1\|WP_041460610.1\|3140063_3140858_+\|DUF2950-family-protein	gnl\|CDD\|371539	pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins.	1.76262e-98
NC_009778.1\|WP_004387656.1\|3124888_3125551_+\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	1.67888e-164
NC_009778.1\|WP_015386992.1\|3131889_3132237_+\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	1.59692e-07
NC_009778.1\|WP_007896738.1\|3123853_3124780_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.8889e-102
NC_009778.1\|WP_012125743.1\|3140913_3141645_-\|complement-resistance-protein-TraT	gnl\|CDD\|184283	PRK13731, PRK13731, complement resistance protein TraT.	1.0809e-126
NC_009778.1\|WP_015386991.1\|3126335_3128732_+\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NC_009778.1\|WP_004388373.1\|3141958_3143383_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_009778.1\|WP_012125741.1\|3138568_3140050_+\|DUF3300-domain-containing-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	4.56737e-96
NC_009778.1\|WP_012125735.1\|3125606_3126143_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	3.46827e-112
NC_009778.1\|WP_004387874.1\|3133226_3134021_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|235480	PRK05462, PRK05462, adenosylmethionine decarboxylase.	0
NC_009778.1\|WP_004387652.1\|3121249_3121630_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	5.04325e-76
NC_009778.1\|WP_007864424.1\|3132360_3133212_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	0
NC_009778.1\|WP_004387654.1\|3123086_3123857_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	9.07927e-174
NC_009778.1\|WP_012125733.1\|3120297_3121152_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	7.52808e-172
NC_009778.1\|WP_007707680.1\|3134049_3134415_-\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	3.99113e-69
NC_009778.1\|WP_097597520.1\|3135064_3137662_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_009778.1\|WP_012125732.1\|3119490_3120285_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.0202e-164

>NC_009778.1|WP_041460608.1|3129114_3130677_-|multicopper-oxidase-CueO
MQRREFIKYTAALGALSALPTWSRAAFAAEQPALPIPALLTPDARSSIQLTVLAGKTTFAGKNVTTWGYNGSLLGPAIKLRQGTPVNINIRNNLAEETTVHWHGLEVPGAVDGGPQGIIAPGQTRSVSFTPEQRAATCWFHPHQHGKTGHQVAMGLAGLVLIEDTESLQLMLPKIWGVDDVPLIIQDKKFTADGEVDYQLDVMTAAVGWFGDTLLCNGAVYPQHTPPKGWLRLRLLNGCNARSLKIAASDNRPLYVIASDGGLLAEPVKVTELPMLMGERFEVLVDTSDARPFDIVTLPVTQMGMTVAPFDKPQPVVRIQPIVVPASGTLPDKLVEVPPLPSLDGLQERWLQLMMDPMLDMMGMDELVKRYGKQALAGNAHGQMMGPMGHGKMSHGGMNHGGHGFDFHNANKINGKAFDMNAPAFGAALGKYERWTISGEGDMMLHPFHIHGTQFRILTENGKPPAAHRAGWKDTVWVEGARSEVLVRFDYAASAEHAYMAHCHLLEHEDTGMMLGFTVA
>NC_009778.1|WP_015386991.1|3126335_3128732_+|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MAETKKTQSRLLVMLTALFAALSGLYLLVGGIWLVSIGGSWYYPIAGVGMLATAWLLWRRNAAALWLYAIILLGTMAWGIWEVGFDFWALTPRCDVLVFFGVWLILPFVWRRLSTPSRAGVPALLVSLIITAGLLFWAGFNDPQEINGTLSADSTPAAVNGSQSIPDGDWPAYGRNQEGQRYSPLKQINTDNVHKLKEAWVFRTGDLKLPTDPGEITNEVTPIKVGDTLFLCTAHQRLFAVDAATGKEKWHFDPQLNTNPSFQHVTCRGVSYHEATAANASPDVVADCPRRIILPVNDGRLFAVNADNGKLCESFANKGILNLQTNMPVTTPGMYEPTSPPIVTDKVIVIAGAVTDNFSTREPSGVIRGFDINTGKLLWAFDPGAKDPNAIPADEHHFSLNSPNSWAPASYDAKLDMVYLPMGVTTPDIWGGNRTPEQERFASSIVALNASTGKLVWSYQTVHHDLWDMDLPAQPTLADITVKGETVPVIYAPAKTGNIFVLDRRNGKLVVPAPEKPVPQGAAKGDYVTPTQPFSDLSFRPKKDLSGADMWGATMYDQLVCRVMFHSLRYEGIFTPPSEQGTLVFPGNLGMFEWGGLAIDPHRQVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTEAGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNDVVWKKRIGTPRDSMPFPMPFPVPFNMGMPMLGGPITTGGNVLFIGATADNYLRAYNVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDAK
>NC_009778.1|WP_012125735.1|3125606_3126143_-|hypoxanthine-phosphoribosyltransferase
MKHTVEVMISEAEIKARVEELGRQITERYQDSGSEMVLVGLLRGSFMFMADLCRQVHVAHEVDFMTASSYGSGMSSTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVDVEVEYIGFSIPDKFVVGYGIDYAQRYRHLPYIGNVVMLEE
>NC_009778.1|WP_004387656.1|3124888_3125551_+|carbonate-dehydratase
MKDISTLISNNEIWSKMLVKEDPGFFERLAKAQKPRFLWIGCSDSRVPAERLTGLEPGEIFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWLLHIRDIWLKHNALLSELPQEKRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQNVTLHGWAYGIHDGLLRDLDVTATDRETLEQGYRKGVSNIQKTHASHK
>NC_009778.1|WP_007896738.1|3123853_3124780_-|ABC-transporter-ATP-binding-protein
MTIALELEQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVRVFGYDLERDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERREAIARSEKYLNQLDLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQRGELVENTSMKSLLSKLKSETFILDLAAKSPLPKLEGYQYRLVDTSTLEVEVLREQGINSVFNQLTAQGVQVLSMRNKANRLEELFVTLVNEKQGERA
>NC_009778.1|WP_004387654.1|3123086_3123857_-|ABC-transporter-permease
MMQLYWVALKSIWAKEVNRFARIWVQTLVPPVITMTLYFIIFGNLIGSRIGEMHGFTYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLCVGILVTAVSLFFVPFQVHSWLFVALTLLMTAILFSLAGLLNAVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQALSHLNPIVYMISGFRFGFLGITDVPLLFTVAVLACFIIAFYLLCWYLISRGRGLRS
>NC_009778.1|WP_012125734.1|3121674_3122922_-|polysaccharide-deacetylase-family-protein
MLNRLFLCLLLLVAGVAQASLLGSEQPPPQYMQITEDAAIWAKVGDNVQTVGIIREGQLLAVMPIAADYYEFRFGFGTGFIDKAHLTDVQGKKRVTDSLGDLNKPLSNQNLLTWRDVTIYNEPDVNSEPFGTLAENLRYPIAGKLKDRLNQTWYQIRIGDRLGYISSLDAQEDNGIPVLTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDQGYATISLYDLDGYVHNRINLPARAVAITFDDGLKSVYRYAYPVMKEYGFKATAFIISSRIKRHPQRWDPKTLQFMSVSELKAIQDVFDIQSHTHFLHRTDGARHPILLSRTYHNILFDYQRSRRALSQFNPHVLFLSYPFGGYDDKAVKAAGDAGFHLAVTTVKGKVKPGDNPYLLKRLYILRTDSLETMSKIISNQPQG
>NC_009778.1|WP_004387652.1|3121249_3121630_+|aspartate-1-decarboxylase
MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLEAAGILEYEAIDIYNVTNGKRFSTYAIAGERGSKIISVNGAAAHCADVGDILIIASYVTMPDEQARSWQPKVAYFDGDNEMKRLAKAVPVQVA
>NC_009778.1|WP_012125733.1|3120297_3121152_+|pantoate--beta-alanine-ligase
MLIIETVPLLRQQIRRLRMEGKRIALVPTMGNLHDGHMKLVDEAKASADAVVVSIFVNPMQFDRADDLARYPRTLQEDCEKLKKRGADFVFAPTPEEVYPQGMSDQTYVDVPGLSTMLEGASRPGHFRGVSTVVSKLFNLVQPDVACFGEKDYQQLALIRKMTADMGYDIEIIGVPTVRAKDGLALSSRNGYLTSDQRKIAPGLSKVMNTMAEKLRAGERDLEAIIAAASEALSEKGFRPDDLQIRDADTLQALSPASQRAVILMAAWLGQARLIDNQTVELTQ
>NC_009778.1|WP_012125732.1|3119490_3120285_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKPTTISQLRRLKETGKKFATITAYDFSFAKLFEEEGIGVMLVGDSLGMTVQGHDSTLPVTVDDIAYHTRAVRRGAPHCLLLADLPFMAYATPEQAFENSAAVMRAGANMVKIEGGQWLADTVRMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRDEAAAQTLLNDALALEAAGAQLLVLECVPVALAQRITNALSIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAEAGDMRAAVRQYIAEVESGAYPGEEHSFH
>NC_009778.1|WP_015386992.1|3131889_3132237_+|YacC-family-pilotin-like-protein
MRKVVRLMFLGCLLAFSTNSFALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDSFNMKALGEDSYRDLSGIAIPTAKKCKALARDSLSLLAYVK
>NC_009778.1|WP_007864424.1|3132360_3133212_+|polyamine-aminopropyltransferase
MWHETLHDQFGQYFAVDKVLYREKTDHQDLIIFENSAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKRVLIIGGGDGAMLREVTRHQSVESITMVEIDAGVVAFCREHLPNHNAGSYDDPRFTLVIDDGVNFVNQTTQKFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEAIDSHKKLSHYFGDVSFYQAAIPTYYGGIMTFAWATDNDALRKLPLETLQARFHTAGLKCRYYNPAIHTAAFALPQYLQDALASQAS
>NC_009778.1|WP_004387874.1|3133226_3134021_+|adenosylmethionine-decarboxylase
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILTETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPQLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSDDIKSLYDMMDVNVYQENIFHTKMLLKEFDLKHYMFHTRPEELTEEERKVITDQLWKEMREIYYGRNIPSV
>NC_009778.1|WP_007707680.1|3134049_3134415_-|YacL-family-protein
MDYEFLRDITGVVKVRLSMGHEALGHWFNEEVKGNLALLDEVEAAARDVKGSERQWQKTGHEYTLWLDGEEVMVRANQLEFSGDEMEEGMSYYDEESLSLCGVEDFLQVVQAYRDFLAQYG
>NC_009778.1|WP_004387876.1|3134598_3134979_+|hypothetical-protein
MNFTLLRRALLLVALPLSHAYAGEAVRLECVNRGNVLVSFFKYHLSTMKWKDHFQIASGIEKSKTDNGVPYEMISFRNGDDLIYFPDKERYVLFDAGKQKPERCQVEGEFTYPVVSLPRYDGKAES
>NC_009778.1|WP_097597520.1|3135064_3137662_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGIVAKPLDATQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAVAKGEATSPLVTPEKAVELLGTMQGGYNIHPLIEALDNDKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNAYAKQIMQSWADAEWFLSRPELAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDIYPFKGEVRHHETGELLANFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRHAKDVAESNRGYSLAQKMVGRACGVAGVRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGITLRDLVHAIPYYAIQQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIEIDLNEIKEPILCAPNDPDDARLLSDVTGDKIDEVFIGSCMTNIGHFRAAGKLLDTHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVAALIGRLPTPEEYQQFMSQVDKTAVDTYRYLNFDQLDQYTEKADGVIFQTAV
>NC_009778.1|WP_012125741.1|3138568_3140050_+|DUF3300-domain-containing-protein
MKLPLKPHLLALLCSAGLFGASGVLFVKSQVPSAAEAPVAAPPTAPVPPQPTPAPATTPTYSAAQIDQWVAPIALYPDALLSQILMASTYPMNMVQAAQWSQDHPTLQGDAAIQAVAGQPWDASVKSLVAFPQLMALLGQNPSWIQNLGDAFLAQPDDVMASVQRLRALAQQTGALTSSLQQKVTTITRTAPPVSPEKPAAAPRSSTVIEIEPATPNVVYVPTYNPATVYGTWQNPAYPPVYLPPTPGEQFGNSFVRGLGYSLGVATTYALFSAIDWDDDDHHHHHDDDYHHHDRHDGGYWHNGDNININVNNYNRITGENRRGNTMPWHPNPAYRNGMDNPHTRVVTPLHRPASATDPIADNRASQRQAAAARFQQATGHNATVNTPHQAARQSLQARAQRSNYRGYDIKPESARLARHAHNASERPFHDATQHAPYHDLHASAFSGNDSRSARWQVQQQRGIESRHLAAAHRPDTPVRERHIEHRQHERHH
>NC_009778.1|WP_041460610.1|3140063_3140858_+|DUF2950-family-protein
MKSTFLAALAFGLSASHAFAQAQFSTPDQAADALTQAISTHDEAALNHLLGDEWREILPPEGADPEEVSRFLRDWKVNHHIVLQGDTAHLQVGAQDWQLPVPLVKHAQGWQFDMQGAAEEILTRTIGRNELAAIAALHAGVDAQLSYYALNQRYAEKIISSEGKKDGLYWPVKPGEAPSPLGPAFSPQRQDMGYHGYHFRLLPTHDNGFAMLAWPVSYGETGVMSFIVKQDDRVLQANLGTDTAQRASAIDPAHLDNTWDPVAP
>NC_009778.1|WP_012125743.1|3140913_3141645_-|complement-resistance-protein-TraT
MSVKKLAVVGLVLAAFTLTGCGAMTTAIKKRNLEVKTQMSQTIWLEPSSEKTVYIQVKNTSDKDMSNLQTLLANDLSAKGYKVTSSPDSAYYWIQANVLKADKMDLREAQGYLKTGYEGAVAGAALGAGITAYNSNSSGAALGVGLAAGLIGMAADAMVEDVNYTMVTDLQISERSKATVTTDNIAALRQGTSGVKLQTSTEQGNRAKYQTRVVSSANKVNLKFEEAKPALEAQLAKSVASIL
>NC_009778.1|WP_004388373.1|3141958_3143383_-|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLSGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGMKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK

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Crispr_ID: NC_009778_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009778_16

4285269-4285350

Orphan

Consensus_repeat	Method
CGCTTACCCGCCCTACGGTGTAGCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009778_16

>merge|NC_009778|16|4285269-4285350|CRISPRCasFinder
CGCTTACCCGCCCTACGGTGTAGCTCACCGCGGGGCTTGTGAGGCGGGTGCGCTACGCTTGCCCGCCCTACGGTGTAGCTCA

>NC_009778|16|15|4285269-4285350|CRISPRCasFinder
CGCTTACCCGCCCTACGGTGTAGCTCA	CCGCGGGGCTTGTGAGGCGGGTGCGCTA
CGCTTGCCCGCCCTACGGTGTAGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009778.1\|WP_004388025.1\|4281450_4282968_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NC_009778.1\|WP_007899829.1\|4283594_4284425_+\|rhomboid-family-intramembrane-serine-protease-GlpG	unknown	unknown	gnl\|CDD\|182828
NC_009778.1\|WP_004386390.1\|4293880_4294456_-\|Fe-S-biogenesis-protein-NfuA	unknown	unknown	gnl\|CDD\|183027
NC_009778.1\|WP_004388021.1\|4275329_4276763_+\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_009778.1\|WP_012126370.1\|4271951_4273934_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|235152
NC_009778.1\|WP_004386389.1\|4293509_4293722_+\|RNA-chaperone/antiterminator-CspA	unknown	unknown	gnl\|CDD\|224197
NC_009778.1\|WP_012126379.1\|4295231_4296011_+\|pimeloyl-ACP-methyl-ester-esterase-BioH	unknown	unknown	gnl\|CDD\|137836
NC_009778.1\|WP_012126380.1\|4296407_4296644_-\|[Fe-S]-dependent-transcriptional-repressor-FeoC	unknown	unknown	gnl\|CDD\|185329
NC_009778.1\|WP_012126376.1\|4285413_4288119_-\|HTH-type-transcriptional-regulator-MalT	unknown	unknown	gnl\|CDD\|235315
NC_009778.1\|WP_012126377.1\|4288717_4291120_+\|maltodextrin-phosphorylase	unknown	unknown	gnl\|CDD\|237881
NC_009778.1\|WP_004388028.1\|4284450_4285209_+\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NC_009778.1\|WP_012126372.1\|4276775_4279223_+\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|184948
NC_009778.1\|WP_012126378.1\|4291131_4293240_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NC_009778.1\|WP_029464283.1\|4294514_4295192_-\|DNA-utilization-protein-GntX	unknown	unknown	gnl\|CDD\|183221
NC_009778.1\|WP_012126373.1\|4279291_4279753_+\|hypothetical-protein	unknown	unknown	unknown
NC_009778.1\|WP_007852719.1\|4283174_4283519_+\|thiosulfate-sulfurtransferase-GlpE	unknown	unknown	gnl\|CDD\|178908
NC_009778.1\|WP_041460670.1\|4279743_4281303_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_009778.1\|WP_012126371.1\|4273947_4275231_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234824
NC_009778.1\|WP_004386392.1\|4296092_4296362_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|182151
NC_009778.1\|WP_012126381.1\|4296643_4298959_-\|Fe(2+)-transporter-permease-subunit-FeoB	unknown	unknown	gnl\|CDD\|236563

Protein	Function_ID	Function_description	E-value
NC_009778.1\|WP_004388025.1\|4281450_4282968_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NC_009778.1\|WP_007899829.1\|4283594_4284425_+\|rhomboid-family-intramembrane-serine-protease-GlpG	gnl\|CDD\|182828	PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional.	8.70154e-162
NC_009778.1\|WP_004386390.1\|4293880_4294456_-\|Fe-S-biogenesis-protein-NfuA	gnl\|CDD\|183027	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA.	3.93858e-158
NC_009778.1\|WP_004388021.1\|4275329_4276763_+\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_009778.1\|WP_012126370.1\|4271951_4273934_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|235152	PRK03705, PRK03705, glycogen debranching protein GlgX.	0
NC_009778.1\|WP_004386389.1\|4293509_4293722_+\|RNA-chaperone/antiterminator-CspA	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.30423e-39
NC_009778.1\|WP_012126379.1\|4295231_4296011_+\|pimeloyl-ACP-methyl-ester-esterase-BioH	gnl\|CDD\|137836	PRK10349, PRK10349, pimeloyl-ACP methyl ester esterase BioH.	3.25368e-151
NC_009778.1\|WP_012126380.1\|4296407_4296644_-\|[Fe-S]-dependent-transcriptional-repressor-FeoC	gnl\|CDD\|185329	PRK15431, PRK15431, [Fe-S]-dependent transcriptional repressor FeoC.	1.88767e-40
NC_009778.1\|WP_012126376.1\|4285413_4288119_-\|HTH-type-transcriptional-regulator-MalT	gnl\|CDD\|235315	PRK04841, PRK04841, HTH-type transcriptional regulator MalT.	0
NC_009778.1\|WP_012126377.1\|4288717_4291120_+\|maltodextrin-phosphorylase	gnl\|CDD\|237881	PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.	0
NC_009778.1\|WP_004388028.1\|4284450_4285209_+\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	0
NC_009778.1\|WP_012126372.1\|4276775_4279223_+\|glycogen-phosphorylase	gnl\|CDD\|184948	PRK14986, PRK14986, glycogen phosphorylase; Provisional.	0
NC_009778.1\|WP_012126378.1\|4291131_4293240_+\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NC_009778.1\|WP_029464283.1\|4294514_4295192_-\|DNA-utilization-protein-GntX	gnl\|CDD\|183221	PRK11595, PRK11595, DNA utilization protein GntX; Provisional.	2.20742e-117
NC_009778.1\|WP_007852719.1\|4283174_4283519_+\|thiosulfate-sulfurtransferase-GlpE	gnl\|CDD\|178908	PRK00162, glpE, thiosulfate sulfurtransferase GlpE.	6.36658e-72
NC_009778.1\|WP_041460670.1\|4279743_4281303_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.62033e-59
NC_009778.1\|WP_012126371.1\|4273947_4275231_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234824	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NC_009778.1\|WP_004386392.1\|4296092_4296362_+\|DUF1471-domain-containing-protein	gnl\|CDD\|182151	PRK09929, PRK09929, hypothetical protein; Provisional.	2.77903e-15
NC_009778.1\|WP_012126381.1\|4296643_4298959_-\|Fe(2+)-transporter-permease-subunit-FeoB	gnl\|CDD\|236563	PRK09554, feoB, Fe(2+) transporter permease subunit FeoB.	0

>NC_009778.1|WP_004388028.1|4284450_4285209_+|DeoR/GlpR-family-transcriptional-regulator
MKQTQRHDAIIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQNMILRHHGGAALPSSSVNTSWHDRKATQTAEKERIAYKVASQIPNGATLFIDIGTTPEAVAHALLNHENLRIVTNNLNVANTLMVKDDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNLGSISLVDAVYTDTMPPAGVMQVITANKVQLELC
>NC_009778.1|WP_007899829.1|4283594_4284425_+|rhomboid-family-intramembrane-serine-protease-GlpG
MLMINSFDNPRLAQAFVDYMATQGVILEIQRHDTWDIWLADEAQAERVKAELSYFLAHPGDPRYLSASWQTGQLNAGLRYRSYPFMASVRAHAGPLTLGMMALCVVAYLAMSIIGSPQVAVWLAWPFDPSLKFQLWRYVSPLLLHFSLLSLIFNLLWWWYLAGPLERSVGSGKLLTLTLVTALVGGVIQYQIAGPWFGGLGGVVYALVGYVWLRGEREPESGLYLPRGILVFMLLWLAIGGLGLFGNKTANADLVAGMLIGLAMAMTDTLHARKRK
>NC_009778.1|WP_007852719.1|4283174_4283519_+|thiosulfate-sulfurtransferase-GlpE
MKEITMDQFECINVEEAHQKLQQGNAVLVDIRDPQSYAMGHTPGAFHLTNATLPAFMQQTDFDVPVLVMCYHGNSSKGAAQYLLHQGYDQVYSVDGGFDAWHRHFPAEVAHGES
>NC_009778.1|WP_004388025.1|4281450_4282968_-|glycerol-3-phosphate-dehydrogenase
METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRTGLFMYDHLGKRTSLPGSTGLRFGSDSVLKPEIVRGFEYSDCWVDDARLVLANAQMVVKKGGEVLTRTRATSARRENGMWIVEAEDIDTGETYTWQARGLVNATGPWVKNFFDDGLKLKSPYGIRLIKGSHIVVPRVHNQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKEVAIDESEISYLLKVYNAHFKKQLARDDVVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHAMEKLSSYYSNIGPAWTRNAVLPGGAFQGERDDYAAQLRRRYPFISETLARHYARTYGSNSELILGDAADIHALGEHFGHEFYEAELRYLVEHEWVRRLDDAIWRRTKLGMWLNGEEQSRVAQWLTENVGKKANVKLSLAS
>NC_009778.1|WP_041460670.1|4279743_4281303_-|GGDEF-domain-containing-protein
MRKATSRSPDAVMLAFLLLISLLVMAVSGGSLWQSWRHSVEETERQARNQAISLARQAEDTFFQVQLTLDDLSRRADDIFLQPAEWNGPRGLLAQQQRQLTQLQGLFVYDTRGDWLATSASGFPAQANSADRDYFIWHSQHSDTGIRIGHVIRSRATGELVVPVSMRLNTPEGRFRGVLLATVKLDYFRQFYGYYEMGPGDTLGITFTDSTVLYVRPFPDSYINRTLSSSPLFTRMLKIAPTGGGAWKSAIDGVPRIFGYATLARYPLVVSAGYDVDELRAAWWRNNIPTLALNAVLLGVVLVFGVLVLRQIRASLRYQRELIVLRDDLTRSNHILQDLALLDGLTGLPNRRQFDIYLEQCMTRAQATGAPVSLVMCDIDYFKSYNDTLGHVAGDECLKAVGEILHHLPLHKSDRVARYGGEEFAIILPGANAHAAEQVAMRALQAIQQARLAHPATPMVEKVLTISAGTATMTGDDASGETLKNQADEALYQAKRAGRNCVVGATGVSHTPLATPYHA
>NC_009778.1|WP_012126373.1|4279291_4279753_+|hypothetical-protein
MTKKTTWAGALLVSLAGAPLLAQVYGAVADFALSGVMRTYASANIGIAVLLMLQGVSLALLGKHQATRRPDSARVFWAVLVWYLLCAAVFSTRAGFLPDAPRGALFFAGWLPSAYVWLLAKDVFFVWPLWLPAAAQASLLAGFYYGRRRARHA
>NC_009778.1|WP_012126372.1|4276775_4279223_+|glycogen-phosphorylase
MNEPFSYASPTLSVEALKHSIAYKLMFTIGKDPAIANKHEWLNATLFAVRDRMVERWLRSTRAQLSQEVRQVYYLSMEFLIGRTLSNALLSLGIYEDVRDALEGMGLSLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVDGRQKESPDYWLEYGNPWEFQRHNTRYKVRFGGRIQQEGKKTRWVETEEIIAVASDQIVPGYDTDATNTLRLWSAQASSAINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILNRHYMLHKTYANLAQKVAIHLNDTHPVLSIPELMRLLIDEHKFSWDEAFEVTCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLRTIQEQYPNDTGLLSRVSIIDESGGRRVRMAWLAVIISHKVNGVSELHSNLMVQSLFADFANIFPMRFLNVTNGVTPRRWLALANPSLSDVLDENIGRTWRTDLSQLSELEQHIDYPTVNQQVREAKLENKKRLAIYIAQHLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDLEWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDADVKDRLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMQEHVGEENIFIFGNTADEVEALRRAGYNPRDYYEKDEELRQVLTQIATGVFSPEEPGRYRDLVDSLINFGDHYQVLADYRSYVDCQEKVDELYLQPEVWTTRAMHNIANMGYFSSDRTIQEYAENIWHITPVRL
>NC_009778.1|WP_004388021.1|4275329_4276763_+|glycogen-synthase-GlgA
MQVLHVCSELFPLLKTGGLADVLGALPAAQIAEGVDTRVLLPGFPDLRRGVADAKVITRRDTFAGRISLLYGHFNGVGIYLIDAPHLYDRPGSPYHDTNLYAYADNVIRFALLGWVGSEMAAGLDPFWRPDIVHAHDWHAGLTPAYLAARGRPAKSVFTVHNLAYKGMFYAHHMDEIGLPWSMFNMNGLEFNGEISFLKAGLYYADHITAVSPTYAREITEPQFAYGLEGLLKQRHSEGRLSGILNGVDENIWNPAHDLLLASRYTRDTLEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMGMDFSWQVAAKSYRELYQRLL
>NC_009778.1|WP_012126371.1|4273947_4275231_+|glucose-1-phosphate-adenylyltransferase
MVRLEKKDPLMLARQLPLKSVALILAGGRGTRLKDLTATRAKPAVHFGGKFRIIDFALSNCINSGIRRIGVITQYQSHTLVQHIQRGWSFFSEEMNEFVDLLPAQQRVHGETWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACLPVPVAEARAFGVMAVDENSKVIDFVEKPANPPSMPCDDTKALASMGIYIFDADYLYELLEEDDENESSSHDFGKDIIPKVTYSGEAYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQDWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRVNSFCNIDSAVLLPDVWVGRSCRLRRCIIDRACVIPEGMVIGENAEEDARRFYRSEEGIVLVTRDMLARLSA
>NC_009778.1|WP_012126370.1|4271951_4273934_+|glycogen-debranching-protein-GlgX
MMQLNAGHSAPPGAWFDGAGVNFTLFSAHAEKVELCLFDESGNETRYALPARSGDVWHGYLPGARPGLRYGYRVHGPWNPAQGHRFNPAKLLLDPCARGVEGDVIDDPRLYGGIDTPDPRDNRDAMPKSVVMDDRYDWEDDAPPNIAWGETVIYEAHVRGLTRLHPDIPPALRGTYAALGHPAMIAWFQRLGITALELQPVAKFCSEPRLQRLGLANYWGYNPLALWAIETRYASQPAPQAALNEFRDAVKALHKAGIEVILDVVLNHSAELDLEGPTFSLRGIDNRSYYWIQDDGDYHNWTGCGNTLNLSHPAVVDYAIGCLKFWVEQCHVDGFRFDLATVMGRTPEFRQDAPLFEAMRRDRSLSAVKLIVEPWDIGPGGYQVGNYPPPFAEWNDRFRDDMRRFWLRSELDVGEVATRVAASADVYRRNGREPWACVNLVTAHDGFTLRDCVSFNGKHNEANGEDNRDGAWENHSNNHGYEGLGGGQSVQDARRASTHALLASLLLSQGTPMLLAGDEQGHSQHGNNNAYCQDNELTWFDWSQADEGLVAYTAALIRLRRQIPALTASRWWEENDGNVRWLNAAGAPMRPEEWHSGTRQLQILLSDRWLVTLNGRDEVSEIVLPEGEWRAVPPFAGEDNPVVMAVWHGPAHGVCVFRKS
>NC_009778.1|WP_012126376.1|4285413_4288119_-|HTH-type-transcriptional-regulator-MalT
MLIPSKLSRPVRLEHTVVRERLLAKLSGASNYRLALITSPAGYGKTTLISQWAAGKTELGWYSLDEGDNQPERFASYLIAAIQQATGGHCASSEVMAQKRQYASLSSLFAQLFIELAAWPRPLFLVIDDYHLITNPVIHEAMRFFLRHQPDHLTLVVLSRNLPQLGIANLRVREQLLEIGSQQLAFTHQEARQFFDCRLSQPIEPAQSNRLCDDVAGWATALQLIALSARQNTGAVHQSARRLAGINASHLSDYLVDEVLNNVDNDTRQFLLKSALLRSMNDALIARVTGEENGQMRLEEIERQGLFLQRMDDSGEWFSYHPLFGSFLRQRCQWELSTELPDIHRAAAESWMAQGFPSEAIHHALAAGDASMLRDILLNHAWGLFNHSELTLLEQSLKALPWESLLANPRLVLLQAWLMQSQHRYSEVNTLLARAEQEMKGEMDDTLHGEFNALRAQVAINDGDPDEAERLAMVALETLPLANFYSRIVATSVHGEVLHCKGDLTKSLSVMQQTELMARRHDVWHYALWSLIQQSEILFAQGFLQAAWETQEKAFTLIQEQHLEQLPLHEFLLRIRAQLLWAWARLDEAEACARTGMTVLANYQPQQQLQCLALLVQCSLARGDLDNARSHLNRLENLLGNGHYHSDWVSNADKVRVIYWQMTGDKAAAAAWLRQTPKPAFANNHFLQSQWRNIARVQILLGDYEPAEMVLEELNENARSLRLMSDINRNLLLLNQLYWNAGRKSDAQRVLMEALTLANRTGFISHFVIEGEAMAQQLRQLLQLNTLPEIEQHRAQRILRDINQHHRHKFAHFDENFVNKLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNDQIAGELDVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYGV
>NC_009778.1|WP_012126377.1|4288717_4291120_+|maltodextrin-phosphorylase
MSQPTFNPTEFEAALTRQWQRFGLHSAKEMTQRQWWQAVSGALSDMLVAIPAHQPQAKQRHVNYISMEFLIGRLTGNNLLNLGWHDEVSRILESHNIHLGDLLEQETDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFEDGKQMEAPDDWHRRSYPWFTHNEALDVQVGIGGKVVKEGKTARWVPGFIITGEAWDLPVVGYRNSVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHQAGKKLRLMQQYFQCACSVADILRRHHLAGRKLAELPDHEVIQLNDTHPTIAIPELLRVLIDEHQLSWDDAWAITSRTFAYTNHTLMPEALECWDERLIRTLLPRHMQIIKEINTRFKKLVTKTWPGDEAVWAKLAVVHNGQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALIDKTLKKEWVNDLDALAGLEKYADDAAFRKAYRTIKQENKQRLAAYIHARTGIEINPNALFDVQIKRLHEYKRQHLNLLHILALYKEIRENPNANRVPRVFLFGAKAAPGYYLAKNIIYAINKVAQAVNNDPQVGDKLKVVFLPDYNVSVAEMMIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEEVKALKAKGYDPVKWRKKDKLLDEVLKELEKGVYANGDKHAFDQMLHSLGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQQRIWQAKR
>NC_009778.1|WP_012126378.1|4291131_4293240_+|4-alpha-glucanotransferase
MESKRLDSSALAAGISPNYINAHGKPQAIGAETKRRLLEAMNPEAAPKAADKSPLPPVKVVAKSRRMQLTPQGRGDYHWLLTSETGEQFSGNARGGEALTLPTKLDEGYHTLTLTRDDSRWHCRLIVAPKRCYEPQALREGKKLWGACVQLYTLRSQNNWGIGDFGDLQAMLNEVGPRGGAFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFRRSDEAQAWWKLKSTQQALKAARESQWVDYSTVTMLKLTALKMAWARFSTRGPDDDDVVAFRDFVARAGESLYWQAAFDAIHAWQAQEDPMRWGWPAWPKAYQNTSSPEVQAFCKNRADEVDFYLWLQWLAYEQFARCWQTSQSHGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMDPHVMQARAYEPFIELLRANMTNCGALRIDHVMSLLRLWWIPYGETADKGAYVQYPVDDLLAILALESQRHRCMVIGEDLGTVPAEIVGKLRDSGVYSYKVLYFENEGGSRFRAPKRWTSQAMAVATTHDLPTLRGYWESGDLTLGKTLGLYPDEEVLKGLYADRERAKQGLLESLHQHGCLPKRAGHHAARMKMGATLNRALQRYIADSNSALLGLQPEDWLDMAQPVNVPGTSDQYKNWRRKLTVGLEAMFADDTVNRLIKDLDKRRRAASAGKPAKRK
>NC_009778.1|WP_004386389.1|4293509_4293722_+|RNA-chaperone/antiterminator-CspA
MSDKMTGLVKWFNAEKGFGFITPDNGSKDVFVHFSAIQNNGFKTLEEGQKVSFSVESGAKGPAAANVTAI
>NC_009778.1|WP_004386390.1|4293880_4294456_-|Fe-S-biogenesis-protein-NfuA
MIRISDAAQAHFAKLLASQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQINPQLAGHGGRVTLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRDLTEHQRGEHSYY
>NC_009778.1|WP_029464283.1|4294514_4295192_-|DNA-utilization-protein-GntX
MLTIPGMCWLCRMPLRVPGWGICSRCQRRRQVAVCPQCGMPAALETQPCGRCLQKPPVWQRLLAASDYAPPVSGLVHQLKFQGRTALAPALARLLLLKILAAKRADALPKADLIISVPLHRTRAWRRGFNQSALIARALSRWLGIRYAPDAVARIKAAPPQRQLSARQRRSNLKNAFRVELPVAGLHIVIVDDVVTTGSTVAQIARLLKRNGAATVQVWCLCRTL
>NC_009778.1|WP_012126379.1|4295231_4296011_+|pimeloyl-ACP-methyl-ester-esterase-BioH
MNDIWWQTTGEGNCHLVLLHGWGLNAEVWRCISQELSSHFTLHLVDLPGYGRSQGYGALTLDEMARLVASRAPECAIWLGWSLGGLVASQVALSEPSRVDALVTVASSPCFQAGADWPGIKPEVLSGFQRQLSEDFQRTVERFLALQTLGTETARQDARVLKSIVLAQPMPGADVLNGGLEILKTADLREALTAWQGPFLRLYGRLDGLVLRKVAALLDARFPDSESQVFEKAAHAPFISHPREFCDALLALKARLANR
>NC_009778.1|WP_004386392.1|4296092_4296362_+|DUF1471-domain-containing-protein
MKLRTGMLLSVVVGSLSFGAMAAQELQKDKVKEMNLTKIGTIVSDKGTAPMDAKAELVKKADEMGGKYYVITSGEKTGKDIHATADVYK
>NC_009778.1|WP_012126380.1|4296407_4296644_-|[Fe-S]-dependent-transcriptional-repressor-FeoC
MATLIEVRDLLALSGRMDAQRISEQLATPMPLVNAMLSRLEAMGKAERQEEWLSGCLSGSCRHCPEGKACRKEVWQLR
>NC_009778.1|WP_012126381.1|4296643_4298959_-|Fe(2+)-transporter-permease-subunit-FeoB
MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGSFATTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGEADMLINVVDASNLERNLYLTLQLLELGIPCVVALNMLDIAEKQNIRIDIDALAKRLGCPVVPLVSTRARGIDSLKLTLDRHTRNETIERVHYPAPLVDAAETLAAVMPHELTLQQRRWLALQMLEGDIYSRGIAGDAAARLPQIQAQLESELDDPALHIVDARYQSISTICDAVSNSLTAEPHRLTAALDNIILNRFLGLPIFLGVMYLMFLLAINIGGALQPIFDAGSVAVFIHGLQWVGYTLHFPAWLTLFLAQGIGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQQGALVVFSLYLLGIVMAILTGLMLKYTIMRGEATPFVMELPVYHVPHLKSLLLQTWQRLKGFVLRAGKVIVIVSVFIGALNSFSFSGKTVDNINDSALASVSRVLTPLLTPIGVHEDNWQATVGLFTGAMAKEVVVGTLNTLYTAENIHEAPFDAASFSLKDELTAALAETWQSLKDTFSLSVLANPIEASKGDGEMATGAMGVMSAKFGSEAAAYSYLIFVLLYIPCISVMGAIARESSRGWMGFSILWGLNIAYSLATLFYQGATFQTHPLFSLTAMLAVVLFNIALLTALRRARSRVDVSLLAPRREARCCETTAGECH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009778_8	8.7\|2690959\|18\|NC_009778\|CRT	2690959-2690976	18	NC_009778.1	2690983-2691000	1	0.944

1. spacer 8.7|2690959|18|NC_009778|CRT matches to position: 2690983-2691000, mismatch: 1, identity: 0.944

cggttggcgtatccgtcg	CRISPR spacer
cggttggtgtatccgtcg	Protospacer
*******.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009778_10	10.11\|2778501\|32\|NC_009778\|CRISPRCasFinder,CRT	2778501-2778532	32	HQ201308	Cronobacter phage ENT47670, complete genome	1081-1112	1	0.969
NC_009778_11	11.1\|2805967\|31\|NC_009778\|CRT	2805967-2805997	31	HQ201308	Cronobacter phage ENT47670, complete genome	11173-11203	2	0.935
NC_009778_11	11.12\|2806637\|33\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806637-2806669	33	MN856003	Bacteriophage sp. isolate 1, complete genome	15682-15714	2	0.939
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026048	Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence	67405-67436	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KX711879	Pseudomonas aeruginosa strain P378 plasmid P378-IMP, complete sequence	1196-1227	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KX928750	Klebsiella pneumoniae strain CRKP-1-KPC plasmid pCRKP-1-KPC, complete sequence	2622-2653	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KX881941	Klebsiella pneumoniae subsp. pneumoniae strain H154180724 plasmid pJF-WMKPCN1, complete sequence	762-793	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KX928751	Klebsiella pneumoniae strain CRKP-5-KPC plasmid pCRKP-5-KPC, complete sequence	2253-2284	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MF072962	Citrobacter freundii strain P10159 plasmid pP10159-2, complete sequence	1196-1227	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY271415	Klebsiella pneumoniae strain H151400611 plasmid IncN_typeC, complete sequence	4121-4152	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY271414	Klebsiella pneumoniae strain H151440672 plasmid IncN_typeB, complete sequence	49038-49069	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT982614	Escherichia coli strain CRE1504 plasmid pIMP-HK1504, complete sequence	53869-53900	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT982615	Escherichia coli strain CRE1505 plasmid pIMP-FS1505, complete sequence	53869-53900	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KX711880	Klebsiella pneumoniae strain 1220 plasmid p1220-IMP, complete sequence	1196-1227	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT982618	Escherichia coli strain CRE1517 plasmid pIMP-GZ1517, complete sequence	51009-51040	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU295131	Escherichia coli strain BK28009 plasmid pBK28009, complete sequence	1678-1709	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY128484	Klebsiella michiganensis strain 97_58 plasmid pKm38_N, complete sequence	2050-2081	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU051707	Escherichia coli strain CRE1502 plasmid pIMP-SZ1502, complete sequence	50782-50813	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT982613	Klebsiella pneumoniae strain CRE 1496 plasmid pIMP1496, complete sequence	50398-50429	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU886034	Klebsiella pneumoniae strain Kp1 plasmid pIMP-HZ1, complete sequence	51019-51050	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU862632	Klebsiella pneumoniae strain CRE1495 plasmid pIMP-KP1495, complete sequence	51011-51042	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU051710	Citrobacter freundii strain CRE1503 plasmid pIMP-FJ1503, complete sequence	49966-49997	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT989598	Enterobacter cloacae strain CRE1506 plasmid pIMP-SH1506, complete sequence	54089-54120	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KM977631	Klebsiella pneumoniae strain CRE1495 plasmid pIMP-1495, complete sequence	50194-50225	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KM660724	Morganella morganii strain MRSN22709 plasmid pMR3-OXA181, complete sequence	282-313	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU051708	Klebsiella pneumoniae strain CRE1501 plasmid pIMP-SZ1501, complete sequence	50889-50920	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KM877517	Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence	22807-22838	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU051709	Escherichia coli strain CRE1058 plasmid pIMP-GZ1058, complete sequence	51020-51051	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KT982616	Escherichia coli strain CRE1509 plasmid pIMP-HK1509, complete sequence	53869-53900	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KU295134	Escherichia coli strain BK32602 plasmid pBK32602, complete sequence	1455-1486	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KM023153	Escherichia coli strain PGR46 plasmid pPGRT46, complete sequence	82556-82587	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KJ440076	Escherichia coli strain CGMHLK75 plasmid pLK75, complete sequence	1233-1264	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_014368	Klebsiella pneumoniae plasmid pNL194, complete sequence	75293-75324	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_020088	Klebsiella pneumoniae plasmid pK18An, complete sequence	2590-2621	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_020086	Escherichia coli plasmid pE66An, complete sequence	33242-33273	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	LT221037	Yersinia pseudotuberculosis strain Yps.R1, plasmid pYps.R1 complete sequence	58455-58486	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	LT221038	Yersinia pseudotuberculosis strain Yps.R2, plasmid pYps.R2 complete sequence	682-713	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY848295	Shigella flexneri Y strain RC960 plasmid pRC960-1, complete sequence	72192-72223	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP045256	Proteus mirabilis strain L90-1 plasmid pL901, complete sequence	1307-1338	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_021660	Klebsiella pneumoniae FCF3SP plasmid pKPC_FCF/3SP, complete sequence	762-793	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_021664	Klebsiella pneumoniae FCF1305 plasmid pKPC_FCF13/05, complete sequence	762-793	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018442	Klebsiella pneumoniae strain Kp_Goe_822917 plasmid pKp_Goe_917-3, complete sequence	24074-24105	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP028486	Escherichia coli strain E41-1 plasmid p3, complete sequence	18199-18230	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP048352	Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence	9086-9117	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP019900	Raoultella planticola strain GODA plasmid unnamed1, complete sequence	94783-94814	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP023420	Klebsiella pneumoniae strain 1050 plasmid pKp1050-4, complete sequence	2125-2156	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052491	Klebsiella pneumoniae strain B17KP0069 plasmid pB17KP0069-1, complete sequence	59737-59768	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK878892	Escherichia coli strain J53 plasmid pMG333, complete sequence	111327-111358	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026277	Klebsiella oxytoca strain KONIH5 plasmid pKPC-8bc0, complete sequence	10948-10979	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP033394	Klebsiella pneumoniae strain WCHKP015625 plasmid pCTXM65_015625, complete sequence	1344-1375	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LS998787	Escherichia coli isolate EC-TO75 plasmid 3, complete sequence	26024-26055	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KJ440075	Klebsiella pneumoniae strain CGMHLK78 plasmid pLK78, complete sequence	1122-1153	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026236	Citrobacter freundii complex sp. CFNIH3 plasmid pKPC-59e4, complete sequence	22876-22907	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP009881	Pantoea sp. PSNIH1 plasmid pKPC-1c5, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	KY051550	Escherichia coli plasmid pFZ11, complete sequence	66446-66477	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026169	Leclercia sp. LSNIH1 plasmid pKPC-79f0, complete sequence	38291-38322	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052433	Klebsiella pneumoniae strain C16KP0122 plasmid pC16KP0122-2, complete sequence	1753-1784	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026764	Shigella flexneri strain 04-3145 plasmid unnamed, complete sequence	33397-33428	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LT838197	Escherichia coli isolate WI1 isolate plasmid pWI1-KPC3, complete sequence	49827-49858	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LS992177	Citrobacter freundii isolate Citrobacter freundii str. E2614 plasmid 3, complete sequence	11145-11176	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LS992177	Citrobacter freundii isolate Citrobacter freundii str. E2614 plasmid 3, complete sequence	60458-60489	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP036363	Klebsiella pneumoniae strain WCHKP2080 plasmid p1_095080, complete sequence	1566-1597	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_025019	Klebsiella pneumoniae subsp. ozaenae plasmid pKo6, complete sequence	2051-2082	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP009867	Pantoea sp. PSNIH2 plasmid pKPC-56a, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP020527	Enterobacter cloacae strain 109 plasmid unnamed2, complete sequence	67754-67785	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP044159	Shigella flexneri strain AR-0423 plasmid pAR-0423-1, complete sequence	3479-3510	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	MN891676	Klebsiella pneumoniae strain 24169 plasmid p24169-KPC, complete sequence	31779-31810	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	MN891686	Klebsiella pneumoniae strain ZZ58 plasmid pZZ58-KPC, complete sequence	47896-47927	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052359	Klebsiella pneumoniae strain D16KP0144 plasmid pD16KP0144-3, complete sequence	3402-3433	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052446	Klebsiella pneumoniae strain C16KP0098 plasmid pC16KP0098-3, complete sequence	1679-1710	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP040895	Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1, complete sequence	1604-1635	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP014524	Escherichia coli strain ZH063 plasmid pZH063_2, complete sequence	2422-2453	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_025186	Klebsiella pneumoniae subsp. pneumoniae strain OW16C2 plasmid pOW16C2, complete sequence	2318-2349	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP040178	Klebsiella pneumoniae strain 2e plasmid unnamed3, complete sequence	38328-38359	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP019006	Escherichia coli strain Ecol_AZ159 plasmid pECAZ159_2, complete sequence	10944-10975	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026274	Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence	229939-229970	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP008824	UNVERIFIED_ORG: Enterobacter cloacae ECNIH2 plasmid pKEC-39c, complete sequence	52608-52639	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP044187	Salmonella enterica subsp. enterica strain AR-0402 plasmid pAR-0402	426-457	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026757	Klebsiella aerogenes strain AR_0062 plasmid tig00000053_pilon, complete sequence	39363-39394	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP035387	Enterobacter hormaechei strain S11_16 plasmid unnamed2, complete sequence	30679-30710	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP052872	Enterobacter cloacae strain 3849 plasmid p3846_IncN_VIM-1, complete sequence	39277-39308	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018963	Escherichia coli strain Ecol_517 plasmid pEC517_KPC, complete sequence	49895-49926	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_021622	Klebsiella pneumoniae plasmid pK45-67VIM complete sequence	42620-42651	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP028958	Morganella morganii strain AR_0133 plasmid unnamed2, complete sequence	14015-14046	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP039821	Klebsiella pneumoniae strain C2414 plasmid pC2414-3-NDM, complete sequence	1937-1968	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052176	Klebsiella pneumoniae strain F16KP0050 plasmid pF16KP0050-1, complete sequence	72700-72731	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP018758	Metakosakonia sp. MRY16-398 plasmid pMRY16-398_2, complete sequence	2511-2542	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_025183	Escherichia coli strain ECN580 plasmid pECN580, complete sequence	1271-1302	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018887	Klebsiella pneumoniae subsp. pneumoniae strain BR21 plasmid pIncN, complete sequence	19181-19212	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP040859	Klebsiella pneumoniae strain Xen39 plasmid unnamed1, complete sequence	20139-20170	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP007732	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKEC-dc3, complete sequence	52619-52650	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026179	Klebsiella pneumoniae strain KPNIH49 plasmid pKPC-224e, complete sequence	61903-61934	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_019082	Escherichia coli plasmid pZS50, complete sequence	2349-2380	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP046118	Enterobacter cloacae strain CBG15936 plasmid pNDM1-CBG, complete sequence	2535-2566	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP017086	Proteus mirabilis strain T18 plasmid pT18, complete sequence	23572-23603	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP036311	Enterobacter hormaechei strain WCHEH090011 plasmid pCTXM65_090011, complete sequence	8853-8884	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	KF534788	Escherichia coli plasmid pNDM-BTR, complete sequence	1159-1190	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP009862	Escherichia coli strain ECONIH1 plasmid pKPC-629, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_014208	Klebsiella oxytoca KOX105 plasmid pKOX105, complete sequence	21925-21956	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_023909	Escherichia coli strain EcNDM1 plasmid pEcNDM1, complete sequence	2348-2379	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_023910	Escherichia coli strain EcNDM0 plasmid pEcNDM0, complete sequence	2348-2379	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP042900	Escherichia coli strain CFSAN061763 plasmid pCFSAN061763, complete sequence	14688-14719	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP009864	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPC-e4e, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LT985266	Escherichia coli strain 177 plasmid RCS53_p, complete sequence	27174-27205	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP009853	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018977	Escherichia coli strain Ecol_656 plasmid pEC656_KPC, complete sequence	54163-54194	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP011589	Enterobacter asburiae strain CAV1043 plasmid pKPC_CAV1043, complete sequence	2534-2565	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026389	Leclercia sp. LSNIH3 plasmid pKPC-3714, complete sequence	38784-38815	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP008901	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pKPC-47e, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_032101	Enterobacter cloacae plasmid pG6809-2, complete sequence	5329-5360	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP025965	Klebsiella pneumoniae strain WCHKP34 plasmid pNDM1_LL34, complete sequence	2532-2563	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP020066	Klebsiella pneumoniae strain AR_0117 plasmid unitig_5, complete sequence	27358-27389	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	387266-387297	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	60074-60105	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	MN178639	Kluyvera cryocrescens strain SCW13 plasmid pSCW13-1, complete sequence	10162-10193	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP038278	Raoultella ornithinolytica strain WLK218 plasmid pWLK-IncN, complete sequence	22228-22259	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP042902	Escherichia coli strain CFSAN061762 plasmid pCFSAN061762, complete sequence	84580-84611	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP010243	Escherichia coli strain S56 plasmid A, complete sequence	18966-18997	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP050160	Escherichia coli plasmid Carbapenemase(IMP-4)_IncN, complete sequence	2523-2554	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP050859	Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-NDM, complete sequence	2532-2563	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP025758	Citrobacter freundii complex sp. CFNIH12 strain CFNIH2 plasmid pKPC-349c, complete sequence	1990-2021	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP025457	Klebsiella pneumoniae strain KP69 plasmid p69-1, complete sequence	56881-56912	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP050159	Enterobacter cloacae plasmid Carbapenemase(IMP-26)_IncN, complete sequence	2460-2491	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP042974	Escherichia coli strain CFSAN061768 plasmid pCFSAN061768, complete sequence	84838-84869	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018945	Escherichia coli strain Ecol_224 plasmid pEC224_KPC, complete sequence	6412-6443	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP018959	Escherichia coli strain Ecol_422 plasmid pEC422_KPC, complete sequence	9882-9913	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP017083	Proteus mirabilis strain T21 plasmid pT211, complete sequence	2578-2609	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP019026	Escherichia coli strain Ecol_881 plasmid pEC881_KPC, complete sequence	15252-15283	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP023725	Klebsiella pneumoniae strain TVGHCRE225 plasmid unnamed3, complete sequence	64109-64140	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026211	Citrobacter sp. CFNIH10 plasmid pCIT-eb1a, complete sequence	40141-40172	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP045022	Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-KPC14, complete sequence	1568-1599	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022367	Escherichia coli E317 plasmid pE317_IMP6 DNA, complete sequence	38049-38080	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP021899	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_4_pilon, complete sequence	54726-54757	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP028579	Klebsiella pneumoniae strain WCHKP36 plasmid p1_020036, complete sequence	4303-4334	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP025710	Escherichia coli strain YDC107 plasmid pYDC107_70, complete sequence	2534-2565	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP042872	Escherichia coli strain CFSAN061766 plasmid pCFSAN061766, complete sequence	22610-22641	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP024509	Klebsiella pneumoniae strain KSB2_1B plasmid unnamed3, complete sequence	58921-58952	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026198	Enterobacteriaceae bacterium ENNIH3 plasmid pKPC-c606, complete sequence	114309-114340	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP029368	Escherichia coli strain WCHEC035148 plasmid pQnrS1_035148, complete sequence	24877-24908	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP030335	Escherichia coli strain AR_451 plasmid unnamed1, complete sequence	27932-27963	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP036368	Klebsiella pneumoniae strain WCHKP115068 plasmid p1_115068, complete sequence	1566-1597	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP007558	Citrobacter freundii CFNIH1 plasmid pKEC-a3c, complete sequence	52608-52639	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP025984	Enterobacteriaceae bacterium A-F18 plasmid pAF18_2, complete sequence	41230-41261	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP018674	Klebsiella pneumoniae strain GSU10-3 plasmid pGSU10-3-3, complete sequence	17542-17573	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_011385	Klebsiella pneumoniae plasmid 12, complete sequence	4885-4916	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP042581	Enterobacter kobei strain C16 plasmid pC16_003, complete sequence	2236-2267	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP020119	Escherichia coli strain AR_0104 plasmid unitig_7, complete sequence	41076-41107	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052139	Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence	91651-91682	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_022885	Escherichia coli strain LK-NARMP plasmid pKPC-LKEc, complete sequence	65757-65788	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026496	Klebsiella pneumoniae strain 616 plasmid pKp616_1, complete sequence	2534-2565	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022353	Escherichia coli E308 plasmid pE308_IMP6 DNA, complete sequence	120860-120891	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022354	Escherichia coli E033 plasmid pE033_IMP6 DNA, complete sequence	80018-80049	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022356	Escherichia coli E119 plasmid pE119_5kIMP6 DNA, complete sequence	2087-2118	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022358	Klebsiella pneumoniae E278 plasmid pE278_IMP6 DNA, complete sequence	12908-12939	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022359	Escherichia coli E294 plasmid pE294_IMP6 DNA, complete sequence	87979-88010	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_011617	Klebsiella pneumoniae plasmid pKP96, complete sequence	2348-2379	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022349	Klebsiella pneumoniae E105 plasmid pKPI-1 DNA, complete sequence	1529-1560	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	AP022350	Escherichia coli E109 plasmid pE109_IMP6 DNA, complete sequence	1418-1449	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_022374	Escherichia coli plasmid pHKU1, complete sequence	2348-2379	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP018362	Escherichia coli strain A56-1S plasmid pA56-1S, complete sequence	2341-2372	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP019550	Klebsiella pneumoniae strain THC11 plasmid pTHC11-2, complete sequence	1420-1451	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP018363	Escherichia coli strain A56-1R plasmid pA56-1R, complete sequence	2304-2335	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP052394	Klebsiella pneumoniae strain C17KP0040 plasmid pC17KP0040-2, complete sequence	3567-3598	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP019403	Klebsiella pneumoniae strain E129 plasmid pE129_IMP6, complete sequence	2274-2305	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP019402	Klebsiella pneumoniae strain E013 plasmid pE013_IMP6, complete sequence	2274-2305	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP019404	Klebsiella pneumoniae strain E188 plasmid pE188_IMP6, complete sequence	2153-2184	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_AP019405	Klebsiella pneumoniae strain E196 plasmid pE196_IMP6, complete sequence	51353-51384	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_019254	Shigella sp. MO17 plasmid pMO17_54, complete sequence	34715-34746	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP020344	Shigella flexneri 1a strain 0439 plasmid unnamed2, complete sequence	35151-35182	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP021734	Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence	69764-69795	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP019910	Escherichia coli strain MDR_56 plasmid unnamed4, complete sequence	29474-29505	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026590	Klebsiella pneumoniae strain NUHL30457 plasmid p4, complete sequence	10962-10993	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP049105	Escherichia coli strain EC28 plasmid p5, complete sequence	1307-1338	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP023981	Klebsiella variicola strain X39 plasmid pX39-4, complete sequence	6968-6999	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK878894	Escherichia coli strain J53 plasmid pMG334, complete sequence	12706-12737	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK416183	Escherichia coli strain Ec-2Lar plasmid unnamed, complete sequence	38175-38206	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_019888	Klebsiella pneumoniae strain BK31551 plasmid pBK31551, complete sequence	1344-1375	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH909339	Klebsiella pneumoniae strain 24632 plasmid p24632-IMP, complete sequence	1233-1264	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH909337	Klebsiella pneumoniae strain 20389 plasmid p20389-IMP, complete sequence	1307-1338	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH909334	Klebsiella pneumoniae strain 13-sp plasmid p13SP-IMP, complete sequence	1938-1969	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH909336	Klebsiella pneumoniae strain 201311334 plasmid p11334-IMP, complete sequence	1196-1227	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH909328	Klebsiella pneumoniae strain D920 plasmid pD920-IMP, complete sequence	39204-39235	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH917123	Klebsiella pneumoniae strain Kp735 plasmid pSZN_KPC, complete sequence	1940-1971	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK036890	Klebsiella pneumoniae strain D610 plasmid pD610-1IMP, complete sequence	38810-38841	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK036889	Klebsiella pneumoniae strain A1966 plasmid pA1966-IMP, complete sequence	75569-75600	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH128095	Klebsiella pneumoniae strain CZPF1510086 plasmid pTBCZNDM02, complete sequence	18854-18885	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK862125	Enterobacter hormaechei strain 1-RC-17-04408-5 plasmid P04408-5-KPC40, complete sequence	1753-1784	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MG886286	Escherichia coli strain ECSIC9 plasmid pECSIC9, complete sequence	48169-48200	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MG773378	Escherichia coli strain WA8 plasmid pWA8, complete sequence	82558-82589	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MF344559	Enterobacter hormaechei strain 128379 plasmid p128379-IMP, complete sequence	41736-41767	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MG764554	Enterobacter cloacae strain 30860 plasmid p30860-tetA, complete sequence	30719-30750	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH536949	Citrobacter freundii strain AA535 plasmid pIBACIncN, complete sequence	45048-45079	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH401970	Enterobacter hormaechei subsp. steigerwaltii strain MED plasmid unnamed, complete sequence	48585-48616	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MH727565	Citrobacter freundii strain ECL-14-57 plasmid pIMP-ECL14-57, complete sequence	51215-51246	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MG878866	Escherichia coli strain Ec19397 plasmid pEc19397-131, complete sequence	75678-75709	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY271413	Klebsiella pneumoniae strain KL49 plasmid IncN_typeA, complete sequence	9569-9600	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MF344557	Klebsiella pneumoniae strain 10677 plasmid p10677-IMP, complete sequence	55831-55862	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MG764553	Klebsiella pneumoniae strain A3295 plasmid pA3295-KPC, complete sequence	34750-34781	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MF788069	Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence	30813-30844	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	32063-32094	2	0.938
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP020059	Escherichia coli strain AR_0061 plasmid unitig_1, complete sequence	73923-73954	2	0.938
NC_009778_10	10.39\|2778498\|35\|NC_009778\|PILER-CR	2778498-2778532	35	HQ201308	Cronobacter phage ENT47670, complete genome	1081-1115	3	0.914
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KY128483	Klebsiella oxytoca strain 97_38 plasmid pKm38_N, complete sequence	1753-1784	3	0.906
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	LN610760	Citrobacter freundii plasmid pCF8698_KPC2, strain CF8698, complete sequence	762-793	3	0.906
NC_009778_6	6.1\|2520565\|25\|NC_009778\|CRISPRCasFinder	2520565-2520589	25	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	613408-613432	4	0.84
NC_009778_11	11.13\|2806699\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806699-2806730	32	HQ201308	Cronobacter phage ENT47670, complete genome	47454-47485	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_KR091915	Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence	49443-49474	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	MK356560	Salmonella sp. strain Sa1423 plasmid pSa1423-50K, complete sequence	8577-8608	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NC_015599	Escherichia coli IncN plasmid N3, complete sequence	39307-39338	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP052871	Enterobacter cloacae strain 3849 plasmid p3846_IncHI2_mcr, complete sequence	243487-243518	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_LT991958	Enterobacter cloacae complex sp. isolate C45 plasmid pC45-VIM4	151933-151964	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP017850	Klebsiella variicola strain GJ2 plasmid pKPGJ-2a, complete sequence	26808-26839	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP017285	Klebsiella variicola strain GJ3 plasmid pKPGJ-3a, complete sequence	34201-34232	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP044036	Klebsiella pneumoniae strain FDAARGOS_630 plasmid unnamed2, complete sequence	71331-71362	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026388	Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence	4591-4622	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP017283	Klebsiella variicola strain GJ1 plasmid pKPGJ-1a, complete sequence	47338-47369	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP026025	Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence	71716-71747	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_MK356561	Escherichia coli strain J53 plasmid pSa1423TC-59K, complete sequence	7911-7942	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	MN823994	Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence	32454-32485	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP031724	Enterobacter hormaechei strain WCHEH020038 plasmid pCTXM9_020038, complete sequence	131308-131339	4	0.875
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP053191	Enterobacter hormaechei strain EGYMCRVIM plasmid pMS-37a, complete sequence	127906-127937	4	0.875
NC_009778_1	1.1\|218616\|27\|NC_009778\|CRISPRCasFinder	218616-218642	27	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	244167-244193	5	0.815
NC_009778_1	1.1\|218616\|27\|NC_009778\|CRISPRCasFinder	218616-218642	27	NZ_CP050138	Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence	45383-45409	6	0.778
NC_009778_1	1.1\|218616\|27\|NC_009778\|CRISPRCasFinder	218616-218642	27	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1022510-1022536	6	0.778
NC_009778_1	1.1\|218616\|27\|NC_009778\|CRISPRCasFinder	218616-218642	27	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	730655-730681	6	0.778
NC_009778_1	1.1\|218616\|27\|NC_009778\|CRISPRCasFinder	218616-218642	27	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1109870-1109896	6	0.778
NC_009778_10	10.15\|2778745\|32\|NC_009778\|CRISPRCasFinder,CRT	2778745-2778776	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	99811-99842	6	0.812
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	699381-699412	6	0.812
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	86077-86108	6	0.812
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	248319-248350	6	0.812
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	155412-155443	6	0.812
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	MN856011	Bacteriophage sp. isolate 67, complete genome	10881-10912	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP028554	Klebsiella variicola strain WCHKP19 plasmid pKPC2_020019, complete sequence	16669-16700	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_KX868552	Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence	28975-29006	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_KY399973	Enterobacter cloacae strain EClY2403 plasmid pKPC2_EClY2403, complete sequence	33197-33228	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_KY399972	Enterobacter cloacae strain EClY2402 plasmid pKPC2_EClY2402, complete sequence	33197-33228	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP032198	Klebsiella pneumoniae strain AR_0097 plasmid unnamed4, complete sequence	2793-2824	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_KP868646	Enterobacter cloacae strain WCHECl-14653 plasmid pKPC2-EC14653, complete sequence	33199-33230	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP040995	Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence	91223-91254	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP033467	Enterobacter cloacae strain E3442 plasmid p3442-FRI-1, complete sequence	26918-26949	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_KJ721789	Klebsiella pneumoniae strain NJ HT1872 plasmid pUSKPC3, complete sequence	75241-75272	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP025039	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_2, complete sequence	138347-138378	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP018815	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0002 plasmid tig00000003, complete sequence	106603-106634	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP027616	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed4, complete sequence	106789-106820	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NC_025131	Klebsiella pneumoniae strain BK30683 plasmid pBK30683, complete sequence	73554-73585	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_LT991960	Enterobacter cloacae complex sp. isolate C45 plasmid pC45-p3	8136-8167	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP010363	Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-139.941kb, complete sequence	19723-19754	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP015387	Klebsiella pneumoniae strain NY9 plasmid pNY9_2, complete sequence	73546-73577	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP041937	Klebsiella pneumoniae strain KP14003 plasmid unnamed3, complete sequence	8152-8183	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	CP052438	Klebsiella pneumoniae strain C16KP0108 plasmid pC16KP0108-4, complete sequence	8120-8151	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_AP019635	Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence	41951-41982	6	0.812
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_MH192342	Klebsiella grimontii strain WCHKG020121 plasmid pKPC2_020121, complete sequence	34481-34512	6	0.812
NC_009778_3	3.1\|1175130\|28\|NC_009778\|CRISPRCasFinder	1175130-1175157	28	MG592662	Vibrio phage 2.058.O._10N.286.46.B8, partial genome	18624-18651	7	0.75
NC_009778_3	3.1\|1175130\|28\|NC_009778\|CRISPRCasFinder	1175130-1175157	28	MG592672	Vibrio phage 3.058.O._10N.286.46.B8, partial genome	18562-18589	7	0.75
NC_009778_5	5.1\|2515537\|33\|NC_009778\|CRISPRCasFinder	2515537-2515569	33	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	158108-158140	7	0.788
NC_009778_8	8.2\|2690743\|30\|NC_009778\|CRT	2690743-2690772	30	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1470172-1470201	7	0.767
NC_009778_8	8.2\|2690743\|30\|NC_009778\|CRT	2690743-2690772	30	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	241784-241813	7	0.767
NC_009778_8	8.6\|2690911\|30\|NC_009778\|CRT	2690911-2690940	30	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	122621-122650	7	0.767
NC_009778_10	10.13\|2778623\|32\|NC_009778\|CRISPRCasFinder,CRT	2778623-2778654	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	131785-131816	7	0.781
NC_009778_10	10.26\|2779416\|32\|NC_009778\|CRISPRCasFinder,CRT	2779416-2779447	32	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	814117-814148	7	0.781
NC_009778_10	10.26\|2779416\|32\|NC_009778\|CRISPRCasFinder,CRT	2779416-2779447	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	480162-480193	7	0.781
NC_009778_10	10.27\|2779477\|32\|NC_009778\|CRISPRCasFinder,CRT	2779477-2779508	32	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	555146-555177	7	0.781
NC_009778_10	10.30\|2779660\|32\|NC_009778\|CRISPRCasFinder,CRT	2779660-2779691	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	681786-681817	7	0.781
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	182039-182070	7	0.781
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	149046-149077	7	0.781
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	230584-230615	7	0.781
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1000075-1000106	7	0.781
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	717528-717559	7	0.781
NC_009778_11	11.4\|2806149\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806149-2806180	32	HQ906665	Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB segment 1, partial genome	10416-10447	7	0.781
NC_009778_11	11.4\|2806149\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806149-2806180	32	KX522565	Wolbachia phage WO, complete genome	64196-64227	7	0.781
NC_009778_11	11.4\|2806149\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806149-2806180	32	HQ906662	Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1, complete sequence	18499-18530	7	0.781
NC_009778_11	11.17\|2806943\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806943-2806974	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	114051-114082	7	0.781
NC_009778_11	11.20\|2807126\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807126-2807157	32	JN660814	Mycobacterium phage Dreamboat, complete genome	18126-18157	7	0.781
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP017851	Klebsiella variicola strain GJ2 plasmid pKPGJ-2b, complete sequence	19394-19425	7	0.781
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP017286	Klebsiella variicola strain GJ3 plasmid pKPGJ-3b, complete sequence	33812-33843	7	0.781
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP017281	Klebsiella variicola strain GJ1 plasmid pKPGJ-1b, complete sequence	16244-16275	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	742431-742462	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	995272-995303	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	963105-963136	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	727900-727931	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1061492-1061523	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	324337-324368	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	736145-736176	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	725649-725680	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	565022-565053	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1393848-1393879	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1080121-1080152	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	987388-987419	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	681900-681931	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	649521-649552	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	201357-201388	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1514623-1514654	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	281647-281678	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	887254-887285	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	748965-748996	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1134276-1134307	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	908640-908671	7	0.781
NC_009778_11	11.23\|2807309\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807309-2807340	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	995275-995306	7	0.781
NC_009778_15	15.1\|3130791\|32\|NC_009778\|CRISPRCasFinder,CRT	3130791-3130822	32	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	19173-19204	7	0.781
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	173246-173277	7	0.781
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP017473	Enterobacter cloacae strain M12X01451 plasmid pM12X01451, complete sequence	139862-139893	7	0.781
NC_009778_8	8.4\|2690827\|30\|NC_009778\|CRT	2690827-2690856	30	MK224592	UNVERIFIED: Mycobacterium phage Henu3, complete genome	39587-39616	8	0.733
NC_009778_8	8.4\|2690827\|30\|NC_009778\|CRT	2690827-2690856	30	NC_048824	Mycobacterium phage Indlulamithi, complete genome	47534-47563	8	0.733
NC_009778_8	8.6\|2690911\|30\|NC_009778\|CRT	2690911-2690940	30	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	730750-730779	8	0.733
NC_009778_8	8.6\|2690911\|30\|NC_009778\|CRT	2690911-2690940	30	AY539836	Burkholderia cenocepacia phage BcepMu, complete genome	33737-33766	8	0.733
NC_009778_10	10.2\|2777951\|32\|NC_009778\|CRISPRCasFinder,CRT	2777951-2777982	32	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	88468-88499	8	0.75
NC_009778_10	10.20\|2779050\|32\|NC_009778\|CRISPRCasFinder,CRT	2779050-2779081	32	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	170109-170140	8	0.75
NC_009778_10	10.20\|2779050\|32\|NC_009778\|CRISPRCasFinder,CRT	2779050-2779081	32	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	417457-417488	8	0.75
NC_009778_10	10.20\|2779050\|32\|NC_009778\|CRISPRCasFinder,CRT	2779050-2779081	32	NC_031109	Gordonia phage Jumbo, complete genome	64774-64805	8	0.75
NC_009778_10	10.21\|2779111\|32\|NC_009778\|CRISPRCasFinder,CRT	2779111-2779142	32	JF974339	Enterobacteria phage IME10, complete genome	25358-25389	8	0.75
NC_009778_10	10.22\|2779172\|32\|NC_009778\|CRISPRCasFinder,CRT	2779172-2779203	32	KX961630	Bacillus phage QCM8, complete genome	62988-63019	8	0.75
NC_009778_10	10.22\|2779172\|32\|NC_009778\|CRISPRCasFinder,CRT	2779172-2779203	32	KT224359	Bacillus phage TsarBomba, complete genome	62499-62530	8	0.75
NC_009778_10	10.28\|2779538\|32\|NC_009778\|CRISPRCasFinder,CRT	2779538-2779569	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	996340-996371	8	0.75
NC_009778_10	10.29\|2779599\|32\|NC_009778\|CRISPRCasFinder,CRT	2779599-2779630	32	NC_048876	Gordonia phage Secretariat, complete genome	29036-29067	8	0.75
NC_009778_11	11.2\|2806027\|32\|NC_009778\|CRT,CRISPRCasFinder	2806027-2806058	32	NZ_CP030855	Runella sp. HYN0085 plasmid unnamed5, complete sequence	16790-16821	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_LR723678	Arsenite-oxidising bacterium NT-25 plasmid 2	172670-172701	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	253891-253922	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1280778-1280809	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	220125-220156	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	220125-220156	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	206669-206700	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	993150-993181	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	415974-416005	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	130679-130710	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	432787-432818	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	20921-20952	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	692647-692678	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	MF185717	Mycobacterium phage AlleyCat, complete genome	742-773	8	0.75
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	MF185719	Mycobacterium phage Edugator, complete genome	742-773	8	0.75
NC_009778_11	11.9\|2806454\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806454-2806485	32	NZ_CP015747	Shinella sp. HZN7 plasmid pShin-11, complete sequence	49048-49079	8	0.75
NC_009778_11	11.10\|2806515\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806515-2806546	32	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	118121-118152	8	0.75
NC_009778_11	11.14\|2806760\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806760-2806791	32	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	109015-109046	8	0.75
NC_009778_11	11.14\|2806760\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806760-2806791	32	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	103975-104006	8	0.75
NC_009778_11	11.16\|2806882\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806882-2806913	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	152295-152326	8	0.75
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	27067-27098	8	0.75
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	686771-686802	8	0.75
NC_009778_11	11.22\|2807248\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807248-2807279	32	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	585154-585185	8	0.75
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	211696-211727	8	0.75
NC_009778_15	15.4\|3130971\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130971-3131002	32	NZ_AP018442	Undibacterium sp. YM2 plasmid pUYM01, complete sequence	65842-65873	8	0.75
NC_009778_15	15.4\|3130971\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130971-3131002	32	NZ_AP018442	Undibacterium sp. YM2 plasmid pUYM01, complete sequence	76032-76063	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1804376-1804407	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2032883-2032914	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1746665-1746696	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1804530-1804561	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1746681-1746712	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	216223-216254	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	128119-128150	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1746663-1746694	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1804043-1804074	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1803987-1804018	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1967361-1967392	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	350177-350208	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	215946-215977	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	330308-330339	8	0.75
NC_009778_15	15.5\|3131031\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131031-3131062	32	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	343733-343764	8	0.75
NC_009778_15	15.6\|3131091\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131091-3131122	32	AP019515	Halomonas sulfidaeris ATCC BAA-803 plasmid pBAA-803-A DNA, complete genome	150898-150929	8	0.75
NC_009778_15	15.6\|3131091\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131091-3131122	32	NZ_CP011053	Halomonas sp. KO116 plasmid unnamed1, complete sequence	190582-190613	8	0.75
NC_009778_8	8.2\|2690743\|30\|NC_009778\|CRT	2690743-2690772	30	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	431553-431582	9	0.7
NC_009778_10	10.1\|2777890\|32\|NC_009778\|CRISPRCasFinder,CRT	2777890-2777921	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	308448-308479	9	0.719
NC_009778_10	10.1\|2777890\|32\|NC_009778\|CRISPRCasFinder,CRT	2777890-2777921	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	179454-179485	9	0.719
NC_009778_10	10.2\|2777951\|32\|NC_009778\|CRISPRCasFinder,CRT	2777951-2777982	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	271327-271358	9	0.719
NC_009778_10	10.2\|2777951\|32\|NC_009778\|CRISPRCasFinder,CRT	2777951-2777982	32	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	339240-339271	9	0.719
NC_009778_10	10.8\|2778318\|32\|NC_009778\|CRISPRCasFinder,CRT	2778318-2778349	32	NZ_CP017304	Rhodococcus sp. YL-1 plasmid pYLL2 sequence	78545-78576	9	0.719
NC_009778_10	10.15\|2778745\|32\|NC_009778\|CRISPRCasFinder,CRT	2778745-2778776	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	50881-50912	9	0.719
NC_009778_10	10.54\|2779413\|35\|NC_009778\|PILER-CR	2779413-2779447	35	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	814117-814151	9	0.743
NC_009778_11	11.1\|2805967\|31\|NC_009778\|CRT	2805967-2805997	31	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	176986-177016	9	0.71
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1361785-1361816	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	867210-867241	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	316647-316678	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	201163-201194	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	221807-221838	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	912195-912226	9	0.719
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	KM363596	Mycobacteriophage Omnicron, complete genome	683-714	9	0.719
NC_009778_11	11.7\|2806332\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806332-2806363	32	NC_010112	Vibrio sp. 23023 plasmid p23023, complete sequence	22191-22222	9	0.719
NC_009778_11	11.7\|2806332\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806332-2806363	32	MK448838	Streptococcus phage Javan100, complete genome	21081-21112	9	0.719
NC_009778_11	11.20\|2807126\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807126-2807157	32	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	60743-60774	9	0.719
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1009463-1009494	9	0.719
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	248017-248048	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	375697-375728	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	792286-792317	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	83261-83292	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	78903-78934	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	298400-298431	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	77457-77488	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	78903-78934	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	83261-83292	9	0.719
NC_009778_11	11.24\|2807370\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807370-2807401	32	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	72570-72601	9	0.719
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	172-203	9	0.719
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	825323-825354	9	0.719
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	12835-12866	9	0.719
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	12829-12860	9	0.719
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	12835-12866	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1039955-1039986	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	699540-699571	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	767079-767110	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	616060-616091	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1040437-1040468	9	0.719
NC_009778_15	15.2\|3130851\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130851-3130882	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	699544-699575	9	0.719
NC_009778_15	15.4\|3130971\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130971-3131002	32	NZ_CP041163	Leisingera aquaemixtae strain R2C4 plasmid unnamed5	1041-1072	9	0.719
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	289826-289857	9	0.719
NC_009778_15	15.10\|3131332\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131332-3131363	32	CP054934	Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence	174340-174371	9	0.719
NC_009778_15	15.11\|3131392\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131392-3131423	32	NZ_CP027525	Pseudoalteromonas carrageenovora strain KCTC 22325 plasmid pKCTC22325, complete sequence	13921-13952	9	0.719
NC_009778_15	15.12\|3131452\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3131452-3131483	32	NC_018696	Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence	196598-196629	9	0.719
NC_009778_10	10.2\|2777951\|32\|NC_009778\|CRISPRCasFinder,CRT	2777951-2777982	32	MH588547	Caulobacter phage CcrSC, complete genome	19892-19923	10	0.688
NC_009778_10	10.2\|2777951\|32\|NC_009778\|CRISPRCasFinder,CRT	2777951-2777982	32	MH588547	Caulobacter phage CcrSC, complete genome	313434-313465	10	0.688
NC_009778_10	10.8\|2778318\|32\|NC_009778\|CRISPRCasFinder,CRT	2778318-2778349	32	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	702831-702862	10	0.688
NC_009778_10	10.8\|2778318\|32\|NC_009778\|CRISPRCasFinder,CRT	2778318-2778349	32	NZ_CP020812	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence	39397-39428	10	0.688
NC_009778_10	10.8\|2778318\|32\|NC_009778\|CRISPRCasFinder,CRT	2778318-2778349	32	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	637127-637158	10	0.688
NC_009778_10	10.26\|2779416\|32\|NC_009778\|CRISPRCasFinder,CRT	2779416-2779447	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	277263-277294	10	0.688
NC_009778_10	10.26\|2779416\|32\|NC_009778\|CRISPRCasFinder,CRT	2779416-2779447	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1365383-1365414	10	0.688
NC_009778_10	10.56\|2779535\|35\|NC_009778\|PILER-CR	2779535-2779569	35	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	996337-996371	10	0.714
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	1247805-1247836	10	0.688
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	2327198-2327229	10	0.688
NC_009778_11	11.3\|2806088\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806088-2806119	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1060833-1060864	10	0.688
NC_009778_11	11.13\|2806699\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2806699-2806730	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	44899-44930	10	0.688
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NZ_CP046332	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed2	131283-131314	10	0.688
NC_009778_11	11.21\|2807187\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807187-2807218	32	NC_006466	Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence	57706-57737	10	0.688
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NZ_CP032318	Hymenobacter oligotrophus strain sh-6 plasmid unnamed1, complete sequence	31827-31858	10	0.688
NC_009778_15	15.4\|3130971\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130971-3131002	32	NZ_CP017078	Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence	231610-231641	10	0.688
NC_009778_15	15.4\|3130971\|32\|NC_009778\|CRISPRCasFinder,CRT,PILER-CR	3130971-3131002	32	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	39345-39376	10	0.688
NC_009778_10	10.36\|2778315\|35\|NC_009778\|PILER-CR	2778315-2778349	35	NZ_CP020812	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence	39397-39431	11	0.686
NC_009778_10	10.36\|2778315\|35\|NC_009778\|PILER-CR	2778315-2778349	35	NZ_CP017304	Rhodococcus sp. YL-1 plasmid pYLL2 sequence	78545-78579	11	0.686
NC_009778_11	11.2\|2806027\|32\|NC_009778\|CRT,CRISPRCasFinder	2806027-2806058	32	KY653119	Morganella phage IME1369_02, complete genome	35714-35745	11	0.656
NC_009778_11	11.27\|2807553\|32\|NC_009778\|CRT,CRISPRCasFinder,PILER-CR	2807553-2807584	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	658183-658214	11	0.656

1. spacer 10.11|2778501|32|NC_009778|CRISPRCasFinder,CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 1, identity: 0.969

tgtctgcgtagtgccggggatctggttgtaat	CRISPR spacer
tgtctgcgtagtgccggggatctgattgtaat	Protospacer
************************.*******

2. spacer 11.1|2805967|31|NC_009778|CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 2, identity: 0.935

agagagccgaagctgttgcgcttcatgagct	CRISPR spacer
acagagccgaagctgttgcgcttcatgagtt	Protospacer
* ***************************.*

3. spacer 11.12|2806637|33|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 2, identity: 0.939

gcgaaaaactaccgtcacattcaacgcgctagc	CRISPR spacer
gcggaaaactaccgtcacattcaacgcgctaac	Protospacer
***.***************************.*

4. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026048 (Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

5. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX711879 (Pseudomonas aeruginosa strain P378 plasmid P378-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

6. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX928750 (Klebsiella pneumoniae strain CRKP-1-KPC plasmid pCRKP-1-KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

7. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX881941 (Klebsiella pneumoniae subsp. pneumoniae strain H154180724 plasmid pJF-WMKPCN1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

8. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX928751 (Klebsiella pneumoniae strain CRKP-5-KPC plasmid pCRKP-5-KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

9. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF072962 (Citrobacter freundii strain P10159 plasmid pP10159-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

10. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY271415 (Klebsiella pneumoniae strain H151400611 plasmid IncN_typeC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

11. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY271414 (Klebsiella pneumoniae strain H151440672 plasmid IncN_typeB, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

12. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT982614 (Escherichia coli strain CRE1504 plasmid pIMP-HK1504, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

13. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT982615 (Escherichia coli strain CRE1505 plasmid pIMP-FS1505, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

14. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX711880 (Klebsiella pneumoniae strain 1220 plasmid p1220-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

15. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT982618 (Escherichia coli strain CRE1517 plasmid pIMP-GZ1517, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

16. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU295131 (Escherichia coli strain BK28009 plasmid pBK28009, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

17. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY128484 (Klebsiella michiganensis strain 97_58 plasmid pKm38_N, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

18. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU051707 (Escherichia coli strain CRE1502 plasmid pIMP-SZ1502, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

19. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT982613 (Klebsiella pneumoniae strain CRE 1496 plasmid pIMP1496, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

20. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU886034 (Klebsiella pneumoniae strain Kp1 plasmid pIMP-HZ1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

21. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU862632 (Klebsiella pneumoniae strain CRE1495 plasmid pIMP-KP1495, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

22. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU051710 (Citrobacter freundii strain CRE1503 plasmid pIMP-FJ1503, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

23. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT989598 (Enterobacter cloacae strain CRE1506 plasmid pIMP-SH1506, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

24. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM977631 (Klebsiella pneumoniae strain CRE1495 plasmid pIMP-1495, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

25. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM660724 (Morganella morganii strain MRSN22709 plasmid pMR3-OXA181, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

26. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU051708 (Klebsiella pneumoniae strain CRE1501 plasmid pIMP-SZ1501, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

27. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM877517 (Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

28. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU051709 (Escherichia coli strain CRE1058 plasmid pIMP-GZ1058, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

29. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT982616 (Escherichia coli strain CRE1509 plasmid pIMP-HK1509, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

30. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU295134 (Escherichia coli strain BK32602 plasmid pBK32602, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

31. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM023153 (Escherichia coli strain PGR46 plasmid pPGRT46, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

32. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ440076 (Escherichia coli strain CGMHLK75 plasmid pLK75, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

33. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_014368 (Klebsiella pneumoniae plasmid pNL194, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

34. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_020088 (Klebsiella pneumoniae plasmid pK18An, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

35. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_020086 (Escherichia coli plasmid pE66An, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

36. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to LT221037 (Yersinia pseudotuberculosis strain Yps.R1, plasmid pYps.R1 complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

37. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to LT221038 (Yersinia pseudotuberculosis strain Yps.R2, plasmid pYps.R2 complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

38. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY848295 (Shigella flexneri Y strain RC960 plasmid pRC960-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

39. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045256 (Proteus mirabilis strain L90-1 plasmid pL901, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

40. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_021660 (Klebsiella pneumoniae FCF3SP plasmid pKPC_FCF/3SP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

41. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_021664 (Klebsiella pneumoniae FCF1305 plasmid pKPC_FCF13/05, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

42. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018442 (Klebsiella pneumoniae strain Kp_Goe_822917 plasmid pKp_Goe_917-3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

43. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028486 (Escherichia coli strain E41-1 plasmid p3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

44. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048352 (Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

45. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019900 (Raoultella planticola strain GODA plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

46. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023420 (Klebsiella pneumoniae strain 1050 plasmid pKp1050-4, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

47. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052491 (Klebsiella pneumoniae strain B17KP0069 plasmid pB17KP0069-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

48. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK878892 (Escherichia coli strain J53 plasmid pMG333, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

49. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026277 (Klebsiella oxytoca strain KONIH5 plasmid pKPC-8bc0, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

50. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033394 (Klebsiella pneumoniae strain WCHKP015625 plasmid pCTXM65_015625, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

51. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LS998787 (Escherichia coli isolate EC-TO75 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

52. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ440075 (Klebsiella pneumoniae strain CGMHLK78 plasmid pLK78, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

53. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026236 (Citrobacter freundii complex sp. CFNIH3 plasmid pKPC-59e4, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

54. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009881 (Pantoea sp. PSNIH1 plasmid pKPC-1c5, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

55. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to KY051550 (Escherichia coli plasmid pFZ11, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

56. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026169 (Leclercia sp. LSNIH1 plasmid pKPC-79f0, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

57. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052433 (Klebsiella pneumoniae strain C16KP0122 plasmid pC16KP0122-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

58. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026764 (Shigella flexneri strain 04-3145 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

59. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT838197 (Escherichia coli isolate WI1 isolate plasmid pWI1-KPC3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

60. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LS992177 (Citrobacter freundii isolate Citrobacter freundii str. E2614 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

61. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LS992177 (Citrobacter freundii isolate Citrobacter freundii str. E2614 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

62. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036363 (Klebsiella pneumoniae strain WCHKP2080 plasmid p1_095080, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

63. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_025019 (Klebsiella pneumoniae subsp. ozaenae plasmid pKo6, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

64. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP009867 (Pantoea sp. PSNIH2 plasmid pKPC-56a, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

65. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020527 (Enterobacter cloacae strain 109 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

66. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044159 (Shigella flexneri strain AR-0423 plasmid pAR-0423-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

67. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to MN891676 (Klebsiella pneumoniae strain 24169 plasmid p24169-KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

68. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to MN891686 (Klebsiella pneumoniae strain ZZ58 plasmid pZZ58-KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

69. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052359 (Klebsiella pneumoniae strain D16KP0144 plasmid pD16KP0144-3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

70. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052446 (Klebsiella pneumoniae strain C16KP0098 plasmid pC16KP0098-3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

71. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040895 (Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

72. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014524 (Escherichia coli strain ZH063 plasmid pZH063_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

73. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_025186 (Klebsiella pneumoniae subsp. pneumoniae strain OW16C2 plasmid pOW16C2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

74. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040178 (Klebsiella pneumoniae strain 2e plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

75. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019006 (Escherichia coli strain Ecol_AZ159 plasmid pECAZ159_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

76. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

77. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008824 (UNVERIFIED_ORG: Enterobacter cloacae ECNIH2 plasmid pKEC-39c, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

78. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044187 (Salmonella enterica subsp. enterica strain AR-0402 plasmid pAR-0402) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

79. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026757 (Klebsiella aerogenes strain AR_0062 plasmid tig00000053_pilon, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

80. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035387 (Enterobacter hormaechei strain S11_16 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

81. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052872 (Enterobacter cloacae strain 3849 plasmid p3846_IncN_VIM-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

82. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018963 (Escherichia coli strain Ecol_517 plasmid pEC517_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

83. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_021622 (Klebsiella pneumoniae plasmid pK45-67VIM complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

84. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028958 (Morganella morganii strain AR_0133 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

85. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039821 (Klebsiella pneumoniae strain C2414 plasmid pC2414-3-NDM, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

86. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052176 (Klebsiella pneumoniae strain F16KP0050 plasmid pF16KP0050-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

87. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018758 (Metakosakonia sp. MRY16-398 plasmid pMRY16-398_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

88. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_025183 (Escherichia coli strain ECN580 plasmid pECN580, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

89. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018887 (Klebsiella pneumoniae subsp. pneumoniae strain BR21 plasmid pIncN, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

90. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040859 (Klebsiella pneumoniae strain Xen39 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

91. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007732 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKEC-dc3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

92. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026179 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPC-224e, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

93. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_019082 (Escherichia coli plasmid pZS50, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

94. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046118 (Enterobacter cloacae strain CBG15936 plasmid pNDM1-CBG, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

95. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017086 (Proteus mirabilis strain T18 plasmid pT18, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

96. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036311 (Enterobacter hormaechei strain WCHEH090011 plasmid pCTXM65_090011, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

97. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to KF534788 (Escherichia coli plasmid pNDM-BTR, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

98. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009862 (Escherichia coli strain ECONIH1 plasmid pKPC-629, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

99. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_014208 (Klebsiella oxytoca KOX105 plasmid pKOX105, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

100. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_023909 (Escherichia coli strain EcNDM1 plasmid pEcNDM1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

101. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_023910 (Escherichia coli strain EcNDM0 plasmid pEcNDM0, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

102. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP042900 (Escherichia coli strain CFSAN061763 plasmid pCFSAN061763, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

103. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009864 (Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPC-e4e, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

104. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985266 (Escherichia coli strain 177 plasmid RCS53_p, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

105. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009853 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

106. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018977 (Escherichia coli strain Ecol_656 plasmid pEC656_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

107. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011589 (Enterobacter asburiae strain CAV1043 plasmid pKPC_CAV1043, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

108. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026389 (Leclercia sp. LSNIH3 plasmid pKPC-3714, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

109. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008901 (Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pKPC-47e, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

110. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_032101 (Enterobacter cloacae plasmid pG6809-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

111. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025965 (Klebsiella pneumoniae strain WCHKP34 plasmid pNDM1_LL34, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

112. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020066 (Klebsiella pneumoniae strain AR_0117 plasmid unitig_5, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

113. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

114. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

115. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to MN178639 (Kluyvera cryocrescens strain SCW13 plasmid pSCW13-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

116. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038278 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-IncN, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

117. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP042902 (Escherichia coli strain CFSAN061762 plasmid pCFSAN061762, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

118. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010243 (Escherichia coli strain S56 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

119. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP050160 (Escherichia coli plasmid Carbapenemase(IMP-4)_IncN, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

120. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050859 (Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-NDM, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

121. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025758 (Citrobacter freundii complex sp. CFNIH12 strain CFNIH2 plasmid pKPC-349c, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

122. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025457 (Klebsiella pneumoniae strain KP69 plasmid p69-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

123. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP050159 (Enterobacter cloacae plasmid Carbapenemase(IMP-26)_IncN, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

124. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP042974 (Escherichia coli strain CFSAN061768 plasmid pCFSAN061768, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

125. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018945 (Escherichia coli strain Ecol_224 plasmid pEC224_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

126. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018959 (Escherichia coli strain Ecol_422 plasmid pEC422_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

127. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017083 (Proteus mirabilis strain T21 plasmid pT211, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

128. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019026 (Escherichia coli strain Ecol_881 plasmid pEC881_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

129. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023725 (Klebsiella pneumoniae strain TVGHCRE225 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

130. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026211 (Citrobacter sp. CFNIH10 plasmid pCIT-eb1a, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

131. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045022 (Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-KPC14, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

132. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022367 (Escherichia coli E317 plasmid pE317_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

133. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021899 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_4_pilon, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

134. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028579 (Klebsiella pneumoniae strain WCHKP36 plasmid p1_020036, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

135. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025710 (Escherichia coli strain YDC107 plasmid pYDC107_70, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

136. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP042872 (Escherichia coli strain CFSAN061766 plasmid pCFSAN061766, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

137. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024509 (Klebsiella pneumoniae strain KSB2_1B plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

138. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026198 (Enterobacteriaceae bacterium ENNIH3 plasmid pKPC-c606, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

139. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029368 (Escherichia coli strain WCHEC035148 plasmid pQnrS1_035148, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

140. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030335 (Escherichia coli strain AR_451 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

141. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036368 (Klebsiella pneumoniae strain WCHKP115068 plasmid p1_115068, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

142. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007558 (Citrobacter freundii CFNIH1 plasmid pKEC-a3c, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

143. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025984 (Enterobacteriaceae bacterium A-F18 plasmid pAF18_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

144. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018674 (Klebsiella pneumoniae strain GSU10-3 plasmid pGSU10-3-3, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

145. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_011385 (Klebsiella pneumoniae plasmid 12, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

146. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042581 (Enterobacter kobei strain C16 plasmid pC16_003, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

147. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020119 (Escherichia coli strain AR_0104 plasmid unitig_7, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

148. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052139 (Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

149. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_022885 (Escherichia coli strain LK-NARMP plasmid pKPC-LKEc, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

150. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026496 (Klebsiella pneumoniae strain 616 plasmid pKp616_1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

151. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022353 (Escherichia coli E308 plasmid pE308_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

152. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022354 (Escherichia coli E033 plasmid pE033_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

153. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022356 (Escherichia coli E119 plasmid pE119_5kIMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

154. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022358 (Klebsiella pneumoniae E278 plasmid pE278_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

155. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022359 (Escherichia coli E294 plasmid pE294_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

156. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_011617 (Klebsiella pneumoniae plasmid pKP96, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

157. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022349 (Klebsiella pneumoniae E105 plasmid pKPI-1 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

158. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP022350 (Escherichia coli E109 plasmid pE109_IMP6 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

159. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_022374 (Escherichia coli plasmid pHKU1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

160. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018362 (Escherichia coli strain A56-1S plasmid pA56-1S, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

161. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019550 (Klebsiella pneumoniae strain THC11 plasmid pTHC11-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

162. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018363 (Escherichia coli strain A56-1R plasmid pA56-1R, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

163. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052394 (Klebsiella pneumoniae strain C17KP0040 plasmid pC17KP0040-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

164. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019403 (Klebsiella pneumoniae strain E129 plasmid pE129_IMP6, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

165. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019402 (Klebsiella pneumoniae strain E013 plasmid pE013_IMP6, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

166. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019404 (Klebsiella pneumoniae strain E188 plasmid pE188_IMP6, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

167. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019405 (Klebsiella pneumoniae strain E196 plasmid pE196_IMP6, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

168. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_019254 (Shigella sp. MO17 plasmid pMO17_54, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

169. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020344 (Shigella flexneri 1a strain 0439 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

170. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021734 (Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

171. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019910 (Escherichia coli strain MDR_56 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

172. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026590 (Klebsiella pneumoniae strain NUHL30457 plasmid p4, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

173. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049105 (Escherichia coli strain EC28 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

174. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023981 (Klebsiella variicola strain X39 plasmid pX39-4, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

175. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK878894 (Escherichia coli strain J53 plasmid pMG334, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

176. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK416183 (Escherichia coli strain Ec-2Lar plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

177. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_019888 (Klebsiella pneumoniae strain BK31551 plasmid pBK31551, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

178. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909339 (Klebsiella pneumoniae strain 24632 plasmid p24632-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

179. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909337 (Klebsiella pneumoniae strain 20389 plasmid p20389-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

180. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909334 (Klebsiella pneumoniae strain 13-sp plasmid p13SP-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

181. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909336 (Klebsiella pneumoniae strain 201311334 plasmid p11334-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

182. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909328 (Klebsiella pneumoniae strain D920 plasmid pD920-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

183. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH917123 (Klebsiella pneumoniae strain Kp735 plasmid pSZN_KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

184. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK036890 (Klebsiella pneumoniae strain D610 plasmid pD610-1IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

185. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK036889 (Klebsiella pneumoniae strain A1966 plasmid pA1966-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

186. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH128095 (Klebsiella pneumoniae strain CZPF1510086 plasmid pTBCZNDM02, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

187. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK862125 (Enterobacter hormaechei strain 1-RC-17-04408-5 plasmid P04408-5-KPC40, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

188. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG886286 (Escherichia coli strain ECSIC9 plasmid pECSIC9, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

189. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG773378 (Escherichia coli strain WA8 plasmid pWA8, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

190. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF344559 (Enterobacter hormaechei strain 128379 plasmid p128379-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

191. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG764554 (Enterobacter cloacae strain 30860 plasmid p30860-tetA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

192. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH536949 (Citrobacter freundii strain AA535 plasmid pIBACIncN, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

193. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH401970 (Enterobacter hormaechei subsp. steigerwaltii strain MED plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

194. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH727565 (Citrobacter freundii strain ECL-14-57 plasmid pIMP-ECL14-57, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

195. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG878866 (Escherichia coli strain Ec19397 plasmid pEc19397-131, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

196. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY271413 (Klebsiella pneumoniae strain KL49 plasmid IncN_typeA, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

197. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF344557 (Klebsiella pneumoniae strain 10677 plasmid p10677-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

198. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG764553 (Klebsiella pneumoniae strain A3295 plasmid pA3295-KPC, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

199. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF788069 (Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

200. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

201. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020059 (Escherichia coli strain AR_0061 plasmid unitig_1, complete sequence) position: , mismatch: 2, identity: 0.938

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggctgggtcgggcgatac	Protospacer
*********************.******** *

202. spacer 10.39|2778498|35|NC_009778|PILER-CR matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 3, identity: 0.914

cactgtctgcgtagtgccggggatctggttgtaat	CRISPR spacer
aaatgtctgcgtagtgccggggatctgattgtaat	Protospacer
 * ************************.*******

203. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY128483 (Klebsiella oxytoca strain 97_38 plasmid pKm38_N, complete sequence) position: , mismatch: 3, identity: 0.906

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ctttgcagggagggggcggggtcgggcgatac	Protospacer
***************** ***.******** *

204. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to LN610760 (Citrobacter freundii plasmid pCF8698_KPC2, strain CF8698, complete sequence) position: , mismatch: 3, identity: 0.906

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
cttagcagggagggggctgggtcgggcgatac	Protospacer
*** *****************.******** *

205. spacer 6.1|2520565|25|NC_009778|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

agcccacggagcggacgttgatgga	CRISPR spacer
cgcgcacggagcggtcgttgatggt	Protospacer
 ** ********** *********

206. spacer 11.13|2806699|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 4, identity: 0.875

ttacactctcgcggcgaaaacggaagcgtgcg	CRISPR spacer
ctgcactcgcgcggcgagaacggaagcgtgcg	Protospacer
.*.***** ********.**************

207. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KR091915 (Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

208. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to MK356560 (Salmonella sp. strain Sa1423 plasmid pSa1423-50K, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

209. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_015599 (Escherichia coli IncN plasmid N3, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

210. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052871 (Enterobacter cloacae strain 3849 plasmid p3846_IncHI2_mcr, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

211. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT991958 (Enterobacter cloacae complex sp. isolate C45 plasmid pC45-VIM4) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

212. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017850 (Klebsiella variicola strain GJ2 plasmid pKPGJ-2a, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

213. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017285 (Klebsiella variicola strain GJ3 plasmid pKPGJ-3a, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

214. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044036 (Klebsiella pneumoniae strain FDAARGOS_630 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

215. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026388 (Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

216. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017283 (Klebsiella variicola strain GJ1 plasmid pKPGJ-1a, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

217. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026025 (Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

218. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK356561 (Escherichia coli strain J53 plasmid pSa1423TC-59K, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

219. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to MN823994 (Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

220. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031724 (Enterobacter hormaechei strain WCHEH020038 plasmid pCTXM9_020038, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

221. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053191 (Enterobacter hormaechei strain EGYMCRVIM plasmid pMS-37a, complete sequence) position: , mismatch: 4, identity: 0.875

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
atacacagggagggggctgggccgggcgatcc	Protospacer
 * ..***************************

222. spacer 1.1|218616|27|NC_009778|CRISPRCasFinder matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 5, identity: 0.815

tgagatgacggtatggtgggtgcgctg	CRISPR spacer
ctcgattacggcatggtgggtgcgctg	Protospacer
.  *** ****.***************

223. spacer 1.1|218616|27|NC_009778|CRISPRCasFinder matches to NZ_CP050138 (Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence) position: , mismatch: 6, identity: 0.778

tgagatgacggtatggtgggtgcgctg	CRISPR spacer
ccctatgacggcatggtgcgtgcgctg	Protospacer
.   *******.****** ********

224. spacer 1.1|218616|27|NC_009778|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

tgagatgacggtatggtgggtgcgctg	CRISPR spacer
ctctatgtcggtctggtgggtgcgctg	Protospacer
.   *** **** **************

225. spacer 1.1|218616|27|NC_009778|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

tgagatgacggtatggtgggtgcgctg	CRISPR spacer
ctctatgtcggtctggtgggtgcgctg	Protospacer
.   *** **** **************

226. spacer 1.1|218616|27|NC_009778|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.778

tgagatgacggtatggtgggtgcgctg	CRISPR spacer
ctctatgtcggtctggtgggtgcgctg	Protospacer
.   *** **** **************

227. spacer 10.15|2778745|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.812

aggcgtttgcaccgggaaccgccagcgccata-	CRISPR spacer
cggcgtttgctccgggaaccggca-cgccggaa	Protospacer
 ********* ********** ** ****. *

228. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.812

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
acgctggaggagctggccgacgcgccggaacc	Protospacer
. ** ** **********************

229. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 6, identity: 0.812

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cagcaggagaagctggccgacgcgccggtcgg	Protospacer
 ****** *.******************  *.

230. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ctggaggtggtgctggccgaagcgccggaaca	Protospacer
  * ****** ********* ********* *

231. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

-gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cgcgcgggc-gagctggacgccgcgccggaaga	Protospacer
 * **.**. ******* ** ************

232. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to MN856011 (Bacteriophage sp. isolate 67, complete genome) position: , mismatch: 6, identity: 0.812

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
agacgggatcacgtaccgccccgtcagcgacc	Protospacer
* * * .************ ***********

233. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028554 (Klebsiella variicola strain WCHKP19 plasmid pKPC2_020019, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

234. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX868552 (Klebsiella variicola strain H152460787 plasmid pJF-787, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

235. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY399973 (Enterobacter cloacae strain EClY2403 plasmid pKPC2_EClY2403, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

236. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY399972 (Enterobacter cloacae strain EClY2402 plasmid pKPC2_EClY2402, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

237. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032198 (Klebsiella pneumoniae strain AR_0097 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

238. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP868646 (Enterobacter cloacae strain WCHECl-14653 plasmid pKPC2-EC14653, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

239. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040995 (Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

240. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033467 (Enterobacter cloacae strain E3442 plasmid p3442-FRI-1, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

241. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ721789 (Klebsiella pneumoniae strain NJ HT1872 plasmid pUSKPC3, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

242. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025039 (Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_2, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

243. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018815 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0002 plasmid tig00000003, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

244. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027616 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

245. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_025131 (Klebsiella pneumoniae strain BK30683 plasmid pBK30683, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

246. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT991960 (Enterobacter cloacae complex sp. isolate C45 plasmid pC45-p3) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

247. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010363 (Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-139.941kb, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

248. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015387 (Klebsiella pneumoniae strain NY9 plasmid pNY9_2, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

249. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041937 (Klebsiella pneumoniae strain KP14003 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

250. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP052438 (Klebsiella pneumoniae strain C16KP0108 plasmid pC16KP0108-4, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

251. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019635 (Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

252. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH192342 (Klebsiella grimontii strain WCHKG020121 plasmid pKPC2_020121, complete sequence) position: , mismatch: 6, identity: 0.812

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacca--ggcgcattgaacgtgatggtgatgatc	Protospacer
  ***  ****** * ***************. *

253. spacer 3.1|1175130|28|NC_009778|CRISPRCasFinder matches to MG592662 (Vibrio phage 2.058.O._10N.286.46.B8, partial genome) position: , mismatch: 7, identity: 0.75

taaaaccaactccatttcccgttagtaa	CRISPR spacer
aatgaccaactccattttccgttagctg	Protospacer
 * .*************.*******. .

254. spacer 3.1|1175130|28|NC_009778|CRISPRCasFinder matches to MG592672 (Vibrio phage 3.058.O._10N.286.46.B8, partial genome) position: , mismatch: 7, identity: 0.75

taaaaccaactccatttcccgttagtaa	CRISPR spacer
aatgaccaactccattttccgttagctg	Protospacer
 * .*************.*******. .

255. spacer 5.1|2515537|33|NC_009778|CRISPRCasFinder matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 7, identity: 0.788

ccagcgcacccgccatgcaaaaccggacattag	CRISPR spacer
ccagcgcacccgccgttcaaaaccccgcatcac	Protospacer
**************.* *******  .***.*

256. spacer 8.2|2690743|30|NC_009778|CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.767

cggtcggcgtatcggtcggcgtatccgttg	CRISPR spacer
cggtcggcgtatcgggcggcgacgaagtcg	Protospacer
*************** *****     **.*

257. spacer 8.2|2690743|30|NC_009778|CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.767

cggtcggcgtatcggtcggcgtatccgttg	CRISPR spacer
ccgacggcgcattggtcggcgtatccgcaa	Protospacer
* * *****.**.**************. .

258. spacer 8.6|2690911|30|NC_009778|CRT matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 7, identity: 0.767

ccgtcggcgtatccgttggcgtatcggttg	CRISPR spacer
gagccatcgtctccggtggcgtatcggttg	Protospacer
  *.*. *** **** **************

259. spacer 10.13|2778623|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.781

tcgaaatcccttcacgcacgttcgc---caccctt	CRISPR spacer
ccgaaatcccttcatgcacgctcgcatgtacc---	Protospacer
.*************.*****.****   .***

260. spacer 10.26|2779416|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.781

ccgggcgcaggccgcatggcgctttgcgcgac-	CRISPR spacer
gtgggcgcaggcggcatagcgctttgc-cgtta	Protospacer
 .********** ****.********* ** .

261. spacer 10.26|2779416|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.781

-ccgggcgcaggccgcatggcgctttgcgcgac	CRISPR spacer
ggcaagggc-ggccgcagggcgctttgggcgac	Protospacer
  *..* ** ******* ********* *****

262. spacer 10.27|2779477|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ccaaactcgatatcgacagtgataccgacgcg	CRISPR spacer
acgatatcgatatcgacaacgataccgacgag	Protospacer
 *.*  ************..********** *

263. spacer 10.30|2779660|32|NC_009778|CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 7, identity: 0.781

ttgcaccggatgccaaaacggcgttagtggcg	CRISPR spacer
ttgcaccgcatgccaaaacgccgatgtcgacg	Protospacer
******** *********** ** *. .*.**

264. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
acgctggaggagctggccgacgcgccggagcc	Protospacer
. ** ** *********************.

265. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ctcgaggtggtgctggccgaagcgccggaaca	Protospacer
    ****** ********* ********* *

266. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 7, identity: 0.781

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ctcgaggtggtgctggccgaagcgccggaaca	Protospacer
    ****** ********* ********* *

267. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.781

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
aacgaagaggagctggccggcgcgccggaagg	Protospacer
.*  *.* ***********.***********.

268. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.781

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gcgcgggtggagctggccgccgcgcagtatgg	Protospacer
* **.************** ***** * * *.

269. spacer 11.4|2806149|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to HQ906665 (Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB segment 1, partial genome) position: , mismatch: 7, identity: 0.781

aacac-aaactgacatcattaaatgtagacact	CRISPR spacer
-tcacaaaacttacttcattaaatgtagaaaac	Protospacer
  *** ***** ** ************** * .

270. spacer 11.4|2806149|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to KX522565 (Wolbachia phage WO, complete genome) position: , mismatch: 7, identity: 0.781

aacac-aaactgacatcattaaatgtagacact	CRISPR spacer
-tcacaaaacttacttcattaaatgtagaaaac	Protospacer
  *** ***** ** ************** * .

271. spacer 11.4|2806149|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to HQ906662 (Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1, complete sequence) position: , mismatch: 7, identity: 0.781

aacac-aaactgacatcattaaatgtagacact	CRISPR spacer
-tcacaaaacttacttcattaaatgtagaaaac	Protospacer
  *** ***** ** ************** * .

272. spacer 11.17|2806943|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgcgta-ctgaatgaaacccccgccaccgacg	CRISPR spacer
-cacacgcctaaatgaaaccccggccaccgacg	Protospacer
 *.*... **.*********** **********

273. spacer 11.20|2807126|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to JN660814 (Mycobacterium phage Dreamboat, complete genome) position: , mismatch: 7, identity: 0.781

ccctggttctggcgctcaacctcggcagcacg	CRISPR spacer
ctacgtctctggcgttcaacctcggcagcatg	Protospacer
*. .* .*******.***************.*

274. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017851 (Klebsiella variicola strain GJ2 plasmid pKPGJ-2b, complete sequence) position: , mismatch: 7, identity: 0.781

-cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
gcctgc-cggtgctgcgggacctgctggggatc	Protospacer
 ****.  ************ * ********

275. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017286 (Klebsiella variicola strain GJ3 plasmid pKPGJ-3b, complete sequence) position: , mismatch: 7, identity: 0.781

-cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
gcctgc-cggtgctgcgggacctgctggggatc	Protospacer
 ****.  ************ * ********

276. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017281 (Klebsiella variicola strain GJ1 plasmid pKPGJ-1b, complete sequence) position: , mismatch: 7, identity: 0.781

-cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
gcctgc-cggtgctgcgggacctgctggggatc	Protospacer
 ****.  ************ * ********

277. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

278. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

279. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

280. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

281. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

282. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

283. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

284. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

285. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

286. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

287. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

288. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

289. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

290. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

291. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

292. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

293. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

294. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

295. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

296. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

297. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

298. spacer 11.23|2807309|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.781

ccctaatccgattaaacccgcgccacccgcca	CRISPR spacer
cgccgatccaatgaaacccgcgccacccgtta	Protospacer
* *..****.** ****************..*

299. spacer 15.1|3130791|32|NC_009778|CRISPRCasFinder,CRT matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.781

cggcagacgtttaccgcgctccaggcgcaggc	CRISPR spacer
tagccgcagtgtaccgccctccaggcgcaggc	Protospacer
..** *  ** ****** **************

300. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 7, identity: 0.781

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
gtttatctggtgggggctggtccgggcgatcc	Protospacer
 ***..  ** ********* ***********

301. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017473 (Enterobacter cloacae strain M12X01451 plasmid pM12X01451, complete sequence) position: , mismatch: 7, identity: 0.781

--ccagcggcgcagtcaacgtgatggtgatggac	CRISPR spacer
gacta--ggcgcattgaacgtgatggtgatgatc	Protospacer
  *.*  ****** * ***************. *

302. spacer 8.4|2690827|30|NC_009778|CRT matches to MK224592 (UNVERIFIED: Mycobacterium phage Henu3, complete genome) position: , mismatch: 8, identity: 0.733

cggttggcgtatccgtcggcgtatcggtcg	CRISPR spacer
ggtgcggcgtatctgtcgtcgtatcggtac	Protospacer
 *  .********.**** *********

303. spacer 8.4|2690827|30|NC_009778|CRT matches to NC_048824 (Mycobacterium phage Indlulamithi, complete genome) position: , mismatch: 8, identity: 0.733

cggttggcgtatccgtcggcgtatcggtcg	CRISPR spacer
tggttggcgtgtccatcggcgtatgtgcgc	Protospacer
.*********.***.*********  *.

304. spacer 8.6|2690911|30|NC_009778|CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.733

ccgtcggcgtatccgttggcgtatcggttg	CRISPR spacer
gacccatcgtctccggtggcgtatcggttg	Protospacer
   .*. *** **** **************

305. spacer 8.6|2690911|30|NC_009778|CRT matches to AY539836 (Burkholderia cenocepacia phage BcepMu, complete genome) position: , mismatch: 8, identity: 0.733

ccgtcggcgtatccgttggcgtatcggttg	CRISPR spacer
cttcctacgtatccgttggcggatcggtaa	Protospacer
*. .* .************** ****** .

306. spacer 10.2|2777951|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aaaagcctacaggccggtcaggacgcaggcgg	CRISPR spacer
gatgtccagcaggccgatcagggcgcaggcgg	Protospacer
.* . ** .*******.*****.*********

307. spacer 10.20|2779050|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttcgcagcccagctgcgtcaaggtggtgccg	CRISPR spacer
cgccggtgcccagcttcttcaaggtggtgctg	Protospacer
  .**  ******** * ************.*

308. spacer 10.20|2779050|32|NC_009778|CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

gttcgcagcccagctgcgtcaaggtggtgccg	CRISPR spacer
cgccggtgcccagcttcttcaaggtggtgctg	Protospacer
  .**  ******** * ************.*

309. spacer 10.20|2779050|32|NC_009778|CRISPRCasFinder,CRT matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75

gttcgcagcccagctgcgtcaaggtggtgccg	CRISPR spacer
tttcgcagccccgctgcgtcgaggacgtcgag	Protospacer
 ********** ********.***  **   *

310. spacer 10.21|2779111|32|NC_009778|CRISPRCasFinder,CRT matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 8, identity: 0.75

agaaacacctctgttggtgataacacgctgcg	CRISPR spacer
gtaaacacctctcttgctgataacactccggt	Protospacer
. ********** *** ********* *.*

311. spacer 10.22|2779172|32|NC_009778|CRISPRCasFinder,CRT matches to KX961630 (Bacillus phage QCM8, complete genome) position: , mismatch: 8, identity: 0.75

ttccaacgtaattagtactgcccgtgcaatcc	CRISPR spacer
tgtaaccgtaattagtacttcccatgcaatag	Protospacer
* . * ************* ***.******

312. spacer 10.22|2779172|32|NC_009778|CRISPRCasFinder,CRT matches to KT224359 (Bacillus phage TsarBomba, complete genome) position: , mismatch: 8, identity: 0.75

ttccaacgtaattagtactgcccgtgcaatcc	CRISPR spacer
tgtaaccgtaattagtacttcccatgcaatag	Protospacer
* . * ************* ***.******

313. spacer 10.28|2779538|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtgattcctgtcgttgccgtgcagaagggg	CRISPR spacer
agttgattcatgacgttgccgtgcagaacctg	Protospacer
.  ****** ** ***************   *

314. spacer 10.29|2779599|32|NC_009778|CRISPRCasFinder,CRT matches to NC_048876 (Gordonia phage Secretariat, complete genome) position: , mismatch: 8, identity: 0.75

caaacgcagggatctaccgcccgaacgataaa	CRISPR spacer
ccgacgcaaggatctatcgcccgaacttcaac	Protospacer
* .*****.*******.*********  .**

315. spacer 11.2|2806027|32|NC_009778|CRT,CRISPRCasFinder matches to NZ_CP030855 (Runella sp. HYN0085 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

ccatcatttttaaatgtaaagttggccgttat	CRISPR spacer
ccatcattattaaatgtaaatttttcagccaa	Protospacer
******** *********** **  * *..*

316. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR723678 (Arsenite-oxidising bacterium NT-25 plasmid 2) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cggcaggtggccctggccgacgcgccgccaac	Protospacer
 .********  ***************  *.

317. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cggcaggtggccctggccgacgcgccgccaac	Protospacer
 .********  ***************  *.

318. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
accctggtggcgctggccgacgcgctggaggc	Protospacer
.  * ***** **************.***.*

319. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
atgcagctggagctggcggacgcgctgatcga	Protospacer
. **** ********** *******.*.  **

320. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
atgcagctggagctggcggacgcgctgatcga	Protospacer
. **** ********** *******.*.  **

321. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gcgcaggtggcgctggccgaggcgcgcaacgc	Protospacer
* ******** ********* ****  .* *

322. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gagcaggtggagcacgccgacgccgagcacgg	Protospacer
*************  ********   * * *.

323. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cagggcgccgagctggccgacgcgctggagga	Protospacer
 ** . *. ****************.***.**

324. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cagtcggtggcgctggccgacgcggcgggggt	Protospacer
 **. ***** ************* ***..*

325. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gcgcaggtggcgctggccgaagcgcgcaacgc	Protospacer
* ******** ********* ****  .* *

326. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
atgcagctggagctggcggacgcgctgatcga	Protospacer
. **** ********** *******.*.  **

327. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacg------cgccggaaga	CRISPR spacer
gagctggtggagctggccgccgcctgcccgcc------	Protospacer
**** ************** **      ****

328. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gggcacgtggagctggccgccgcgcgtgtaac	Protospacer
*.*** ************* *****  * *.

329. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to MF185719 (Mycobacterium phage Edugator, complete genome) position: , mismatch: 8, identity: 0.75

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
gggcacgtggagctggccgccgcgcgtgtaac	Protospacer
*.*** ************* *****  * *.

330. spacer 11.9|2806454|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP015747 (Shinella sp. HZN7 plasmid pShin-11, complete sequence) position: , mismatch: 8, identity: 0.75

ggaagccggagtggatcgaatcggcggtatta	CRISPR spacer
gccagccggagcggatcgaaccggcgttgcga	Protospacer
*  ********.********.***** *.. *

331. spacer 11.10|2806515|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 8, identity: 0.75

-gaagtagatgcttttgccgctggcccacattt	CRISPR spacer
cgccgccg-tgtttttgccgctggcccactttc	Protospacer
 *  *. * **.***************** **.

332. spacer 11.14|2806760|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttatttgctgtcgccgctttccgaagtga	CRISPR spacer
cgatcattggctgtcgcagctttccgaagctc	Protospacer
.* *.*** ******** ***********.

333. spacer 11.14|2806760|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttatttgctgtcgccgctttccgaagtga	CRISPR spacer
cgatcattggctgtcgcagctttccgaagctc	Protospacer
.* *.*** ******** ***********.

334. spacer 11.16|2806882|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.75

gatgcactgaatcgggtctatttcgtaaatct	CRISPR spacer
tttgggctgaatcgggcctatttcgcaaagcg	Protospacer
  ** .**********.********.*** *

335. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 8, identity: 0.75

cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
cacgcgcggtgctgcgggcgcagctggagaac	Protospacer
* .*.. *********** ********.***

336. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.75

cctgtaag-----gtgctgcgggagcagctggggaaa	CRISPR spacer
-----aggatctcgtgctgcgcgagcagctgggaaaa	Protospacer
     *.*     ******** ***********.***

337. spacer 11.22|2807248|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tcacctatgcccgccgccgatatggaatccgg	CRISPR spacer
gccccggcacccgccgccgatatggacgccgg	Protospacer
 * ** ...*****************  ****

338. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
gcccggacgcacgtaccgcgtcgacagcgacg	Protospacer
.*  * *  ***********.** ********

339. spacer 15.4|3130971|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018442 (Undibacterium sp. YM2 plasmid pUYM01, complete sequence) position: , mismatch: 8, identity: 0.75

caatccgcggtcgcgtttcagcgcagcagtgc	CRISPR spacer
gagtggtccgtcccgtttgagcgcagcagtgc	Protospacer
 *.*   * *** ***** *************

340. spacer 15.4|3130971|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018442 (Undibacterium sp. YM2 plasmid pUYM01, complete sequence) position: , mismatch: 8, identity: 0.75

caatccgcggtcgcgtttcagcgcagcagtgc	CRISPR spacer
gagtggtccgtcccgtttgagcgcagcagtgc	Protospacer
 *.*   * *** ***** *************

341. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

342. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

343. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

344. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

345. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

346. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

347. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

348. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

349. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

350. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

351. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

352. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

353. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

354. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgc----cgctcacacccaccctgagcacgac	CRISPR spacer
----tgtcctacgcgcacaccgaccctgagcacggc	Protospacer
    **.    *** ****** ************.*

355. spacer 15.5|3131031|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtgccgctcacacccaccctgagcacgac	CRISPR spacer
cacgacgcgctcacacccgccctgaggacgtc	Protospacer
*  *   ***********.******* *** *

356. spacer 15.6|3131091|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to AP019515 (Halomonas sulfidaeris ATCC BAA-803 plasmid pBAA-803-A DNA, complete genome) position: , mismatch: 8, identity: 0.75

tctcccacgctgcgccatagtcgtttgtgcca	CRISPR spacer
tgatgcacgatgcgccatagtcgtttgtcgga	Protospacer
*  . **** ******************   *

357. spacer 15.6|3131091|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011053 (Halomonas sp. KO116 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tctcccacgctgcgccatagtcgtttgtgcca	CRISPR spacer
tgatgcacgatgcgccatagtcgtttgtcgga	Protospacer
*  . **** ******************   *

358. spacer 8.2|2690743|30|NC_009778|CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 9, identity: 0.7

cggtcggcgtatcggtcggcgtatccgttg	CRISPR spacer
cggtcggcgtatcggtgggcgcgcggcgcg	Protospacer
**************** ****...    .*

359. spacer 10.1|2777890|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.719

ttgatcatctatcgcggcgaggtgcatcaccg	CRISPR spacer
ctgatcatcgagcgcggcgaggtggcccgggg	Protospacer
.******** * ************  .*.  *

360. spacer 10.1|2777890|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

ttgatcatctatcgcggcgaggtgcatcaccg	CRISPR spacer
tcgatgatctatcgcggcgtggtgcccttcgt	Protospacer
*.*** ************* ***** .. *

361. spacer 10.2|2777951|32|NC_009778|CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagcctacaggccggtcaggacgcaggcgg	CRISPR spacer
cagcaggaacaggccggtcatgacgaaggcgg	Protospacer
 *. .   ************ **** ******

362. spacer 10.2|2777951|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagcctacaggccggtcaggacgcaggcgg	CRISPR spacer
caggccgggcaggccggtcagggcgcgggcgg	Protospacer
 *.. *  .*************.***.*****

363. spacer 10.8|2778318|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 9, identity: 0.719

cagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
cagcacgccgtgaacgtcggaatcgacgtcgc	Protospacer
**********.*********.**** .. ..

364. spacer 10.15|2778745|32|NC_009778|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

aggcgtttgcaccgggaaccgccagcgccata	CRISPR spacer
cggcgtttgcaccgggcagcgccacgggcgac	Protospacer
 *************** * *****  * *.

365. spacer 10.54|2779413|35|NC_009778|PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 9, identity: 0.743

cacccgggcgcaggccgcatggcgctttgcgcgac-	CRISPR spacer
gatgtgggcgcaggcggcatagcgctttgc-cgtta	Protospacer
 *. .********** ****.********* ** .

366. spacer 11.1|2805967|31|NC_009778|CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.71

agagagccgaagctgttgcgcttcatgagct	CRISPR spacer
gccttgccgcagctgttgcgcttcaagatcg	Protospacer
.    **** *************** ** *

367. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ctgaccgtggagctggtcgaggcgccggaact	Protospacer
  *   **********.*** *********

368. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ggcgaggtggagctgcccgaggcgccgctcgc	Protospacer
*.  *********** **** ******   *

369. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
ccggcggtgctgctggccgacgcgccggccgc	Protospacer
  *  ****  *****************  *

370. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
tcgaaggtgctgctggccgacgcgccgcagct	Protospacer
  * *****  **************** *.

371. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
tcgaaggtgctgctggccgacgcgccgcagct	Protospacer
  * *****  **************** *.

372. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cgcgagaccgagctggccgccgcgcaggaaga	Protospacer
 .  **.. ********** ***** ******

373. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to KM363596 (Mycobacteriophage Omnicron, complete genome) position: , mismatch: 9, identity: 0.719

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
tggcacgtggagctggccgccgcgcgcgtaac	Protospacer
 .*** ************* *****  * *.

374. spacer 11.7|2806332|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_010112 (Vibrio sp. 23023 plasmid p23023, complete sequence) position: , mismatch: 9, identity: 0.719

tgtggcccataaagacctctttaaaagatgct	CRISPR spacer
gctcgaccttaaagtcctctttaaaagattgc	Protospacer
  * * ** ***** **************  .

375. spacer 11.7|2806332|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to MK448838 (Streptococcus phage Javan100, complete genome) position: , mismatch: 9, identity: 0.719

tgtggcccataaagacctctttaaaagatgct	CRISPR spacer
ctaagcccataaagaactcttcaaaaggttca	Protospacer
.  .*********** *****.*****.* *

376. spacer 11.20|2807126|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccctggttctggcgctcaacctcggcagcacg	CRISPR spacer
agcagcggatggcgctcaagctcggcagcgcg	Protospacer
  * *    ********** *********.**

377. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.719

cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
aggatctggtgctgcgcgaacagctggggaag	Protospacer
   .*  ********* **.***********.

378. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.719

cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
aggatttggtgctgcgcgaacagctggggaag	Protospacer
   .*  ********* **.***********.

379. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

380. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

381. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

382. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

383. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

384. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

385. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

386. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

387. spacer 11.24|2807370|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.719

acaggtaatcacgtaccgcgccgtcagcgacg	CRISPR spacer
cgtcgagatcacgttccgcgccgtcatcgacc	Protospacer
    * .******* *********** ****

388. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 9, identity: 0.719

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
cctcatccgacggacggcgaaacgccctttaa	Protospacer
.*     ************ ****** ****

389. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 9, identity: 0.719

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
tcggcatcgacgtacggcgcaacccagacgcg	Protospacer
****** ***** ********** * * .

390. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 9, identity: 0.719

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
tcggcatcgacgtacggcgcaacccagacgcg	Protospacer
****** ***** ********** * * .

391. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 9, identity: 0.719

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
tcggcatcgacgtacggcgcaacccagacgcg	Protospacer
****** ***** ********** * * .

392. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 9, identity: 0.719

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
tcggcatcgacgtacggcgcaacccagacgcg	Protospacer
****** ***** ********** * * .

393. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

394. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

395. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

396. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

397. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

398. spacer 15.2|3130851|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

ttccactacgcgattgttaacgacgactggga	CRISPR spacer
ttccgctacgcgattgttgacgaggtggtcgt	Protospacer
****.*************.**** *     *

399. spacer 15.4|3130971|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041163 (Leisingera aquaemixtae strain R2C4 plasmid unnamed5) position: , mismatch: 9, identity: 0.719

caatccgcggtcgcgtttcagcgcagcagtgc	CRISPR spacer
cggaccgaggccgcgtttcagcgcagcggctg	Protospacer
*.. *** **.****************.*.

400. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ggcggggaggaggggcctgcgccgggcgatcc	Protospacer
  . * ..******* *** ************

401. spacer 15.10|3131332|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to CP054934 (Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctttgcagggagggggctgggccgggcgatcc	CRISPR spacer
ccgtgcagggacgggggtgggccgggaagggc	Protospacer
*. ******** **** ********* ..  *

402. spacer 15.11|3131392|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027525 (Pseudoalteromonas carrageenovora strain KCTC 22325 plasmid pKCTC22325, complete sequence) position: , mismatch: 9, identity: 0.719

ccagcggc-----gcagtcaacgtgatggtgatggac	CRISPR spacer
-----ggtacttggcaatcaacgtgatgctgatggaa	Protospacer
     **.     ***.*********** *******

403. spacer 15.12|3131452|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NC_018696 (Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence) position: , mismatch: 9, identity: 0.719

tggggaaacgcctcaacgtgaaagacgggagc	CRISPR spacer
gtatcaaacgcttcaacgtgaaggacggcatc	Protospacer
  .  ******.**********.***** * *

404. spacer 10.2|2777951|32|NC_009778|CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 10, identity: 0.688

aaaagcctacaggccggtcaggacgcaggcgg	CRISPR spacer
gatcatgcgcaggccggtcaggacggcggcgg	Protospacer
.*  .. ..****************  *****

405. spacer 10.2|2777951|32|NC_009778|CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 10, identity: 0.688

aaaagcctacaggccggtcaggacgcaggcgg	CRISPR spacer
gatcatgcgcaggccggtcaggacggcggcgg	Protospacer
.*  .. ..****************  *****

406. spacer 10.8|2778318|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.688

cagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
cagcacgcagcgcacgtcgggatcacgcccca	Protospacer
******** *** ***********..   . .

407. spacer 10.8|2778318|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP020812 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

cagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
caggacgacgcgaacgtcgggatctcgctcga	Protospacer
*** *** **************** .   ...

408. spacer 10.8|2778318|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 10, identity: 0.688

cagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
cggcaggccgcgaacgccgggatcgcacgcga	Protospacer
*.*** **********.********.  ....

409. spacer 10.26|2779416|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggcgcaggccgcatggcgctttgcgcgac	CRISPR spacer
ggcggcgcaggcggcagggcgctttgacgaag	Protospacer
   ********* *** *********   .*

410. spacer 10.26|2779416|32|NC_009778|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggcgcaggccgcatggcgctttgcgcgac	CRISPR spacer
ggcggcgcaggcggcagggcgctttgacgaag	Protospacer
   ********* *** *********   .*

411. spacer 10.56|2779535|35|NC_009778|PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

cacgcgtgattcctgtcgttgccgtgcagaagggg	CRISPR spacer
accagttgattcatgacgttgccgtgcagaacctg	Protospacer
  *.  ****** ** ***************   *

412. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cagcaggtggaactggccgaggcgctctcctc	Protospacer
 **********.******** ****.

413. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.688

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
cagcaggtggaactggccgaggcgctctcctc	Protospacer
 **********.******** ****.

414. spacer 11.3|2806088|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.688

gagcaggtggagctggccgacgcgccggaaga	CRISPR spacer
tccgcggtggagctgaccgacgcgctgggcgc	Protospacer
     **********.*********.**. *

415. spacer 11.13|2806699|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 10, identity: 0.688

ttacactctcgcggcgaaaacggaagcgtgcg	CRISPR spacer
gcattactgcgcggcggaaaccgaagcgtgcg	Protospacer
 .*.  .. *******.**** **********

416. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP046332 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
acgcccaggcgctgcaggagcagctgggggct	Protospacer
 *  . ***.*****.*************.

417. spacer 11.21|2807187|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_006466 (Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence) position: , mismatch: 10, identity: 0.688

cctgtaaggtgctgcgggagcagctggggaaa	CRISPR spacer
acgcccaggcgctgcaggagcagctgggggct	Protospacer
 *  . ***.*****.*************.

418. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032318 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
gtatcaacgaccgacggcgcaatgccggggcc	Protospacer
 .. ******* **********.****    *

419. spacer 15.4|3130971|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017078 (Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence) position: , mismatch: 10, identity: 0.688

caatccgcggtcgcgtttcagcgcagcagtgc	CRISPR spacer
tttggcggggtcgcgtttcagcgcggcactca	Protospacer
.    ** ****************.*** *

420. spacer 15.4|3130971|32|NC_009778|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 10, identity: 0.688

caatccgcggtcgcgtttcagcgcagcagtgc	CRISPR spacer
ggtgtggcgggcgcggttcagcgcagcaggtc	Protospacer
 .  . **** **** *************  *

421. spacer 10.36|2778315|35|NC_009778|PILER-CR matches to NZ_CP020812 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.686

caccagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
aaccaggacgacgcgaacgtcgggatctcgctcga	Protospacer
 ***** *** **************** .   ...

422. spacer 10.36|2778315|35|NC_009778|PILER-CR matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 11, identity: 0.686

caccagcacgccgcgaacgtcgggatcgttaatag	CRISPR spacer
cgacagcacgccgtgaacgtcggaatcgacgtcgc	Protospacer
*. **********.*********.**** .. ..

423. spacer 11.2|2806027|32|NC_009778|CRT,CRISPRCasFinder matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 11, identity: 0.656

ccatcatttttaaatgtaaagttggccgttat	CRISPR spacer
ttgatgcctttaaatgtaaagttgtcagttaa	Protospacer
... ....**************** * ****

424. spacer 11.27|2807553|32|NC_009778|CRT,CRISPRCasFinder,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

tcggcaacgacggacggcgcaacgccgtttac	CRISPR spacer
aaagcgacgacggaaggcgcaacgcctggagg	Protospacer
  .**.******** ***********    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

590302 : 601816

Enterobacteria_phage(71.43%)

integrase

attL 589739:589762|attR 601865:601888

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
589739:589762	attL	NA	NA	NA	NA
WP_071817994.1\|590302_591835_+	ATP-binding protein	K7PHD1	Enterobacteria_phage	3.0e-94	39.7
WP_071817995.1\|591831_592674_+	hypothetical protein	NA	NA	NA	NA
WP_012123979.1\|592838_595154_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	2.1e-256	59.6
WP_012123980.1\|595167_595509_-	DUF5375 family protein	NA	NA	NA	NA
WP_012123981.1\|595495_595762_-	hypothetical protein	NA	NA	NA	NA
WP_041460398.1\|595758_596286_-	ash family protein	Q7M2A7	Enterobacteria_phage	3.0e-30	58.1
WP_041460399.1\|596299_596548_-	hypothetical protein	NA	NA	NA	NA
WP_041460400.1\|596544_596802_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.1e-17	55.0
WP_012123985.1\|597310_598021_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.1e-14	28.0
WP_012123986.1\|598017_598269_+	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	2.4e-14	61.7
WP_012123987.1\|598549_599245_-	HNH endonuclease	NA	NA	NA	NA
WP_181037662.1\|599241_600483_-	AAA family ATPase	NA	NA	NA	NA
WP_012123989.1\|600616_601816_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	5.3e-107	49.6
601865:601888	attR	NA	NA	NA	NA

DBSCAN-SWA_2

969834 : 1056237

Cronobacter_phage(20.41%)

portal,head,protease,lysis,capsid,integrase,tail,holin,terminase

attL 969652:969703|attR 1009907:1009958

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
969652:969703	attL	NA	NA	NA	NA
WP_012124195.1\|969834_971019_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2D1GN00	Marinobacter_phage	2.0e-37	32.6
WP_012124196.1\|971020_971230_-	hypothetical protein	NA	NA	NA	NA
WP_041460437.1\|971268_971838_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	3.0e-60	58.4
WP_012124198.1\|971871_972192_-	hypothetical protein	A0A077KAZ4	Edwardsiella_phage	2.2e-36	81.9
WP_012124199.1\|972184_972622_-	hypothetical protein	NA	NA	NA	NA
WP_012124200.1\|972618_973101_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	3.9e-69	77.1
WP_041460438.1\|973093_973438_-	hypothetical protein	NA	NA	NA	NA
WP_012124203.1\|974255_975185_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	8.3e-100	61.0
WP_012124205.1\|975984_976311_-	hypothetical protein	NA	NA	NA	NA
WP_007901036.1\|976472_977351_+	BRCT domain-containing protein	U3PB51	Vibrio_phage	4.2e-37	33.8
WP_012124207.1\|977342_978032_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	7.2e-40	42.4
WP_012124208.1\|978167_978389_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007901034.1\|978439_978991_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.7e-65	67.4
WP_012124209.1\|979157_979325_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_012124212.1\|980213_980450_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_012124213.1\|980449_981628_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.2e-105	82.4
WP_012124214.1\|981624_981954_+	LexA family transcriptional regulator	U5P451	Shigella_phage	5.7e-19	49.0
WP_004388343.1\|981950_982334_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.2e-51	77.2
WP_049761066.1\|982349_983075_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	3.4e-56	54.8
WP_041460440.1\|983071_984121_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.4e-133	65.0
WP_012124217.1\|984139_984898_+	antitermination protein	A0A192Y5X6	Salmonella_phage	2.7e-80	60.7
WP_071817998.1\|985189_985426_+	ParD-like family protein	NA	NA	NA	NA
WP_041460694.1\|985394_985736_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_007747946.1\|985878_986259_+\|holin	phage holin family protein	F1C592	Cronobacter_phage	4.5e-60	97.6
WP_007709085.1\|986245_986530_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.9e-19	54.3
WP_012124219.1\|986526_987150_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	4.5e-110	95.2
WP_012124220.1\|987149_987614_+\|lysis	lysis protein	F1C590	Cronobacter_phage	2.3e-34	57.1
WP_041460441.1\|988136_988487_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	9.8e-54	83.5
WP_012124223.1\|988483_988702_+	hypothetical protein	NA	NA	NA	NA
WP_041460442.1\|988864_989338_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.0e-79	91.1
WP_012124225.1\|989337_991095_+\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	91.6
WP_012124226.1\|991094_992399_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.4e-223	88.2
WP_012124227.1\|992407_993262_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.0e-116	76.1
WP_012124228.1\|993275_994496_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.1e-205	92.9
WP_012124229.1\|994549_994732_+	hypothetical protein	K7PHI6	Enterobacteria_phage	7.4e-13	89.5
WP_012124230.1\|994741_995068_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	1.1e-25	51.9
WP_012124231.1\|995064_995406_+\|head	phage head closure protein	NA	NA	NA	NA
WP_012124232.1\|995402_995852_+	HK97 gp10 family phage protein	A0A220NRP5	Escherichia_phage	1.8e-63	85.9
WP_012124233.1\|995848_996178_+	DUF3168 domain-containing protein	A0A1P8DTJ3	Proteus_phage	1.9e-22	53.6
WP_012124234.1\|996225_996681_+	hypothetical protein	A0A1W6JP06	Morganella_phage	4.0e-55	74.3
WP_015386562.1\|996731_997127_+\|tail	phage tail assembly chaperone	F1C576	Cronobacter_phage	3.7e-57	87.0
WP_012124237.1\|997150_997420_+	DUF4035 domain-containing protein	K7PLY6	Enterobacterial_phage	3.8e-21	58.6
WP_012124238.1\|997511_997850_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	2.1e-32	61.5
WP_012124239.1\|997910_1001441_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	7.6e-287	51.2
WP_012124240.1\|1001486_1001825_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	1.6e-37	61.6
WP_012124241.1\|1001831_1002584_+\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	7.1e-142	96.4
WP_012124242.1\|1002586_1003291_+	C40 family peptidase	F1C573	Cronobacter_phage	1.8e-139	97.4
WP_012124243.1\|1003287_1003884_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.8e-103	99.0
WP_012124244.1\|1003933_1007095_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	97.3
WP_049761345.1\|1007447_1008032_+	hypothetical protein	F1C570	Cronobacter_phage	6.0e-56	56.9
WP_012124246.1\|1008969_1009551_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.6e-32	40.9
WP_012124247.1\|1010060_1011824_-	DUF3413 domain-containing protein	NA	NA	NA	NA
1009907:1009958	attR	NA	NA	NA	NA
WP_004387431.1\|1011843_1012071_-	YejL family protein	NA	NA	NA	NA
WP_012124248.1\|1012205_1013210_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.8e-85	48.0
WP_004387433.1\|1013310_1013595_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_012124249.1\|1013721_1015482_-	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.4e-100	42.4
WP_012124251.1\|1015652_1016360_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_012124252.1\|1016375_1017572_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.9e-24	24.7
WP_004387437.1\|1017906_1018251_+	hypothetical protein	NA	NA	NA	NA
WP_012124254.1\|1018254_1019844_-	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	3.2e-19	32.8
WP_012124255.1\|1019845_1020871_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_004387440.1\|1020867_1021965_-	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_012124256.1\|1021973_1023779_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012124257.1\|1023874_1025437_-	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_004387441.1\|1025606_1026176_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	2.1e-13	39.8
WP_007851281.1\|1026602_1027310_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012124258.1\|1027340_1028327_-	GTP-binding protein	NA	NA	NA	NA
WP_041460443.1\|1028457_1029924_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	6.0e-44	32.5
WP_012124262.1\|1030130_1031321_+	mannonate dehydratase	NA	NA	NA	NA
WP_004387446.1\|1031385_1031958_-	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_004387449.1\|1032464_1032719_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_012124266.1\|1032715_1033897_-	sugar efflux transporter SetB	NA	NA	NA	NA
WP_012124267.1\|1034266_1035400_+	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_004387452.1\|1035396_1036335_+	1-phosphofructokinase	NA	NA	NA	NA
WP_007869388.1\|1036351_1038049_+	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_041460444.1\|1038177_1039008_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_012124269.1\|1039008_1039866_-	deoxyribonuclease IV	A0A1V0SFR4	Hokovirus	8.1e-25	33.8
WP_041460445.1\|1039940_1040990_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_007851261.1\|1041107_1041974_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_029039354.1\|1042160_1043630_+	amino acid permease	NA	NA	NA	NA
WP_041460446.1\|1043842_1044673_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_004387460.1\|1044796_1045921_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_004387461.1\|1046045_1046717_+	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	1.2e-55	55.8
WP_012124275.1\|1046725_1047883_+	DUF418 family protein	NA	NA	NA	NA
WP_012124276.1\|1048038_1049064_+	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_004387464.1\|1049347_1050346_+	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_004387465.1\|1050427_1051948_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	6.3e-12	32.0
WP_004387466.1\|1051963_1052974_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_004387784.1\|1053689_1054403_-	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_012124277.1\|1054527_1055412_-	cytidine deaminase	NA	NA	NA	NA
WP_007869369.1\|1055541_1056237_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

DBSCAN-SWA_3

1204536 : 1213524

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007794693.1\|1204536_1204776_-	DinI family protein	K7PKM2	Enterobacterial_phage	5.5e-32	84.8
WP_041460463.1\|1204929_1206054_-	porin OmpC	Q1MVN1	Enterobacteria_phage	9.4e-106	56.5
WP_012124374.1\|1206698_1207397_+	phosphohydrolase	S4W232	Pandoravirus	1.3e-07	26.9
WP_162618440.1\|1207523_1208891_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	2.9e-101	53.4
WP_012124376.1\|1208874_1209372_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.1e-33	49.0
WP_012124377.1\|1209375_1210287_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_004388132.1\|1210465_1211380_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_004388133.1\|1211469_1211652_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_012124379.1\|1211853_1213524_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.7e-23	38.6

DBSCAN-SWA_4

1561009 : 1567764

Cronobacter_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012124593.1\|1561009_1562293_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	4.3e-147	57.2
WP_015386639.1\|1562318_1562570_-	excisionase family protein	S4TND0	Salmonella_phage	2.0e-16	47.4
WP_012124595.1\|1562650_1563751_-	AAA family ATPase	I6PCV5	Cronobacter_phage	4.6e-198	91.5
WP_038862657.1\|1563752_1564043_-	host-nuclease inhibitor protein	I6PDJ2	Cronobacter_phage	1.6e-33	72.6
WP_012124597.1\|1564735_1565341_-	LexA family transcriptional regulator	A0A2D1GM27	Escherichia_phage	6.3e-16	52.9
WP_071818046.1\|1565450_1565672_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	6.7e-16	60.3
WP_012124598.1\|1565728_1566073_+	hypothetical protein	I6PCV6	Cronobacter_phage	8.2e-45	88.2
WP_012124599.1\|1566163_1567021_+	helix-turn-helix domain-containing protein	A0A2H4J2W5	uncultured_Caudovirales_phage	1.0e-43	58.6
WP_012124600.1\|1567017_1567764_+	replication protein	I6PBN0	Cronobacter_phage	4.2e-78	66.1

DBSCAN-SWA_5

1570797 : 1638149

Salmonella_phage(19.23%)

portal,head,protease,tRNA,lysis,capsid,tail,holin,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012124603.1\|1570797_1571253_+	recombination protein NinB	I6PD71	Cronobacter_phage	7.2e-73	84.8
WP_012124605.1\|1571446_1571743_+	hypothetical protein	F1C5C8	Cronobacter_phage	1.5e-31	72.3
WP_012124606.1\|1571739_1572102_+	RusA family crossover junction endodeoxyribonuclease	I6PBN1	Cronobacter_phage	1.6e-54	87.5
WP_012124607.1\|1572098_1572794_+	antitermination protein	I6PDF8	Cronobacter_phage	2.8e-76	65.4
WP_012124608.1\|1572927_1573161_+	hypothetical protein	NA	NA	NA	NA
WP_007793917.1\|1573908_1574124_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	6.7e-29	84.5
WP_015386656.1\|1574123_1574609_+	lysozyme	A0A2H4FND7	Salmonella_phage	7.7e-65	72.3
WP_012124610.1\|1574608_1574959_+	hypothetical protein	NA	NA	NA	NA
WP_041460487.1\|1575754_1576099_-	anti-adapter protein IraP	NA	NA	NA	NA
WP_108637838.1\|1576235_1576355_+\|lysis	lysis protein	NA	NA	NA	NA
WP_071818005.1\|1576403_1576586_+\|lysis	lysis protein	NA	NA	NA	NA
WP_012124613.1\|1576630_1576951_-	hypothetical protein	NA	NA	NA	NA
WP_071818047.1\|1577219_1577735_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_041460488.1\|1577858_1578218_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.0e-37	64.3
WP_015386663.1\|1578384_1578813_+\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	4.6e-29	57.5
WP_012124617.1\|1578816_1580544_+\|terminase	terminase large subunit	Q8W631	Enterobacteria_phage	1.2e-205	60.1
WP_012124619.1\|1580689_1581931_+\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	4.0e-174	71.3
WP_012124620.1\|1581923_1582547_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	9.3e-79	82.7
WP_012124621.1\|1582616_1583837_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	2.7e-143	64.5
WP_012124622.1\|1583842_1584109_+	Ig domain-containing protein	A0A0C5KL53	Enterococcus_phage	1.1e-07	48.1
WP_012124623.1\|1584143_1584461_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	3.1e-30	59.8
WP_012124624.1\|1584457_1584853_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	1.3e-30	53.5
WP_012124625.1\|1584845_1585364_+	hypothetical protein	A0A192Y6D2	Salmonella_phage	9.7e-66	72.8
WP_012124627.1\|1585860_1586433_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	5.2e-60	60.5
WP_012124628.1\|1586490_1587672_+	hypothetical protein	O22004	Shigella_phage	4.4e-21	41.5
WP_129560256.1\|1587947_1588094_+\|tail	tail fiber assembly protein	A0A1S6KZY8	Salmonella_phage	1.9e-06	48.9
WP_015386679.1\|1588798_1589125_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_054628786.1\|1589423_1589675_-	hypothetical protein	NA	NA	NA	NA
WP_041460489.1\|1589663_1590716_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012124632.1\|1590712_1592947_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_012124633.1\|1592943_1593621_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_012124634.1\|1593636_1594719_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-08	27.0
WP_041460490.1\|1594768_1595761_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_041460705.1\|1595926_1597324_+	YcjX family protein	NA	NA	NA	NA
WP_007868161.1\|1597320_1598364_+	TIGR01620 family protein	NA	NA	NA	NA
WP_041460491.1\|1598512_1600075_+	transcriptional regulator TyrR	NA	NA	NA	NA
WP_004387306.1\|1600126_1600633_-	thiol peroxidase	NA	NA	NA	NA
WP_012124638.1\|1600769_1601768_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_012124639.1\|1601749_1602472_-	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_012124640.1\|1602716_1604333_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012124641.1\|1604393_1604834_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_170921726.1\|1604951_1605287_-	anti-adapter protein IraM	NA	NA	NA	NA
WP_012124642.1\|1605773_1606355_-	hypothetical protein	NA	NA	NA	NA
WP_004387314.1\|1606595_1606850_+	hypothetical protein	NA	NA	NA	NA
WP_004387315.1\|1606996_1607236_-	general stress protein	NA	NA	NA	NA
WP_004387316.1\|1607958_1609710_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004387317.1\|1609910_1610102_-	hypothetical protein	I6S5X8	Salmonella_phage	2.9e-07	46.6
WP_004387318.1\|1610175_1610499_-	hypothetical protein	NA	NA	NA	NA
WP_004387319.1\|1610700_1610874_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_004387320.1\|1610952_1611156_+	hypothetical protein	NA	NA	NA	NA
WP_004387321.1\|1611195_1612179_+	zinc transporter ZntB	NA	NA	NA	NA
WP_004387322.1\|1612498_1612648_+	hypothetical protein	NA	NA	NA	NA
WP_012124649.1\|1612685_1613618_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.4e-141	94.2
WP_012124651.1\|1613903_1615016_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_014728788.1\|1615419_1616277_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	6.1e-65	48.6
WP_012124654.1\|1616294_1617365_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_012124655.1\|1617345_1619151_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012124656.1\|1619422_1620943_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012124657.1\|1620975_1622007_+	alcohol dehydrogenase AdhP	A0A2K9L7I1	Tupanvirus	1.0e-37	31.6
WP_041460492.1\|1622175_1623222_+	hypothetical protein	NA	NA	NA	NA
WP_012124659.1\|1623223_1626745_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_015386690.1\|1627023_1627290_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_007896943.1\|1627290_1627713_-	heat shock protein HslJ	NA	NA	NA	NA
WP_004388292.1\|1627767_1628757_-	2-hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.1e-68	43.1
WP_012124661.1\|1628968_1631611_+	YdbH family protein	NA	NA	NA	NA
WP_004388543.1\|1631607_1631799_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_007868029.1\|1631810_1632131_+	YdbL family protein	NA	NA	NA	NA
WP_012124662.1\|1632209_1632536_+	hypothetical protein	NA	NA	NA	NA
WP_004386715.1\|1632596_1633202_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_012124663.1\|1633406_1637312_+	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	6.5e-53	29.4
WP_012124664.1\|1637630_1638149_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2063285 : 2073483

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004387814.1\|2063285_2063750_-	C40 family peptidase	S5MM68	Bacillus_phage	1.0e-10	36.0
WP_012124992.1\|2063827_2064571_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	28.0
WP_004387815.1\|2064573_2065125_-	glutathione peroxidase	NA	NA	NA	NA
WP_012124993.1\|2065154_2066156_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_004387086.1\|2066233_2066533_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_012124994.1\|2066537_2068925_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	7.3e-07	27.1
WP_007867262.1\|2068940_2069924_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_124752678.1\|2070143_2070338_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124849.1\|2070309_2070666_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2070713_2070911_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_012905609.1\|2071008_2071551_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	32.3
WP_004387090.1\|2071554_2073483_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.6

DBSCAN-SWA_7

2690638 : 2702614

Cronobacter_phage(44.44%)

lysis,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012125402.1\|2690638_2693137_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.8e-30	25.6
WP_124813642.1\|2694587_2694974_+	hypothetical protein	NA	NA	NA	NA
WP_041460580.1\|2694977_2695958_-\|capsid	minor capsid protein	F1C5D8	Cronobacter_phage	2.1e-162	97.3
WP_041460581.1\|2696796_2697243_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	6.0e-48	76.5
WP_041460730.1\|2697252_2697453_-	hypothetical protein	NA	NA	NA	NA
WP_012125409.1\|2697845_2698310_-\|lysis	lysis protein	G0ZNC9	Cronobacter_phage	4.4e-49	72.5
WP_165756271.1\|2698299_2698797_-	glycoside hydrolase family protein	A0A2H4JCH1	uncultured_Caudovirales_phage	5.7e-71	73.3
WP_032986368.1\|2698805_2699051_-\|lysis	lysis protein	A0A2H4JCI1	uncultured_Caudovirales_phage	1.4e-27	85.7
WP_012125412.1\|2699269_2699551_+	DUF1456 family protein	NA	NA	NA	NA
WP_012125413.1\|2699811_2700576_-	antitermination protein	G0ZNC6	Cronobacter_phage	1.0e-132	97.6
WP_012125414.1\|2700572_2700752_-	hypothetical protein	NA	NA	NA	NA
WP_012125415.1\|2700748_2701006_-	hypothetical protein	G0ZNC5	Cronobacter_phage	5.9e-40	98.8
WP_012125417.1\|2701747_2702614_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.8e-30	37.7

DBSCAN-SWA_8

2974742 : 3029308

Cronobacter_phage(55.74%)

integrase,terminase,tail,capsid

attL 2976089:2976134|attR 3025395:3025440

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012125605.1\|2974742_2975924_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.4e-123	55.7
2976089:2976134	attL	NA	NA	NA	NA
WP_012125606.1\|2976324_2976687_+	GtrA family protein	F1C5B1	Cronobacter_phage	2.9e-56	96.7
WP_012125607.1\|2976683_2977613_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	1.7e-161	92.4
WP_012125608.1\|2977609_2979088_+	glucosyltransferase domain-containing protein	I1TED7	Salmonella_phage	5.7e-18	24.1
WP_012125609.1\|2979111_2981103_-	hypothetical protein	F1C5A8	Cronobacter_phage	2.3e-62	32.5
WP_012125610.1\|2981159_2983637_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	96.2
WP_012125611.1\|2983623_2984040_-	C40 family peptidase	F1C5F2	Cronobacter_phage	6.6e-73	92.6
WP_012125612.1\|2984002_2984473_-	hypothetical protein	F1C5F1	Cronobacter_phage	1.1e-81	96.2
WP_012125613.1\|2984472_2984970_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.3e-95	97.0
WP_012125614.1\|2984969_2988452_-	tape measure protein	R9TMK1	Aeromonas_phage	4.2e-261	60.5
WP_146091190.1\|2988521_2989118_-	hypothetical protein	NA	NA	NA	NA
WP_104672587.1\|2989191_2989896_-	hypothetical protein	F1C5E8	Cronobacter_phage	2.5e-88	67.0
WP_012125617.1\|2989877_2990471_-	hypothetical protein	F1C5E7	Cronobacter_phage	5.0e-106	91.9
WP_012125618.1\|2990452_2991910_-	glycosyltransferase family 2 protein	F1C5E6	Cronobacter_phage	1.3e-285	96.5
WP_012125619.1\|2991949_2992444_-	hypothetical protein	F1C5E5	Cronobacter_phage	5.1e-88	98.8
WP_012125621.1\|2992467_2992851_-	hypothetical protein	F1C5E4	Cronobacter_phage	2.2e-67	96.1
WP_012125622.1\|2992847_2993216_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.3e-59	99.2
WP_012125623.1\|2993217_2993568_-	hypothetical protein	G0ZNE2	Cronobacter_phage	8.1e-40	67.8
WP_007847582.1\|2993635_2994016_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.9e-63	100.0
WP_007847581.1\|2994018_2994216_-	hypothetical protein	NA	NA	NA	NA
WP_012125624.1\|2994225_2995311_-	hypothetical protein	F1C5E1	Cronobacter_phage	3.6e-195	93.9
WP_012125625.1\|2995323_2995752_-	hypothetical protein	F1C5E0	Cronobacter_phage	2.2e-71	98.6
WP_012125626.1\|2995757_2997158_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.1e-241	97.6
WP_012125627.1\|2997209_2997557_+	hypothetical protein	NA	NA	NA	NA
WP_041460599.1\|2997560_2998538_-\|capsid	minor capsid protein	F1C5D8	Cronobacter_phage	5.4e-158	94.6
WP_012125629.1\|2998491_2999949_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.1e-260	95.7
WP_012125630.1\|2999960_3001424_-	hypothetical protein	G0ZND4	Cronobacter_phage	2.9e-280	99.4
WP_007706533.1\|3001410_3001968_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	7.2e-99	98.9
WP_041460600.1\|3001995_3002331_+	hypothetical protein	NA	NA	NA	NA
WP_012125632.1\|3002386_3002587_-	hypothetical protein	NA	NA	NA	NA
WP_012125633.1\|3002638_3002851_-	hypothetical protein	NA	NA	NA	NA
WP_012125634.1\|3002960_3003488_-	hypothetical protein	NA	NA	NA	NA
WP_012125635.1\|3003586_3004291_-	phage antirepressor KilAC domain-containing protein	Q5MBW0	Stx1-converting_phage	6.3e-100	81.8
WP_041460601.1\|3004699_3004996_+	hypothetical protein	NA	NA	NA	NA
WP_143711294.1\|3005154_3005478_-	hypothetical protein	R9TPM9	Aeromonas_phage	2.5e-11	43.4
WP_165756669.1\|3005509_3005998_-	glycoside hydrolase family protein	G0ZNC8	Cronobacter_phage	2.1e-86	98.8
WP_049761357.1\|3006012_3006234_-	hypothetical protein	G0ZNC7	Cronobacter_phage	2.1e-30	95.8
WP_041460602.1\|3006518_3006710_+	hypothetical protein	NA	NA	NA	NA
WP_012125643.1\|3007581_3008199_-	hypothetical protein	F1C5D0	Cronobacter_phage	2.8e-112	97.5
WP_012125644.1\|3008195_3008375_-	hypothetical protein	NA	NA	NA	NA
WP_012125645.1\|3008371_3008629_-	hypothetical protein	G0ZNC5	Cronobacter_phage	9.5e-38	96.4
WP_094301150.1\|3008625_3009240_-	recombination protein NinG	G0ZNC4	Cronobacter_phage	3.2e-108	100.0
WP_041460740.1\|3009236_3009530_-	hypothetical protein	K7PHK7	Enterobacteria_phage	3.5e-28	66.0
WP_012125648.1\|3009522_3009699_-	hypothetical protein	Q5G8S2	Enterobacteria_phage	2.6e-10	53.4
WP_012125649.1\|3009691_3010012_-	DUF2591 domain-containing protein	E5AGF4	Erwinia_phage	7.7e-13	39.0
WP_012125650.1\|3010102_3010324_-	hypothetical protein	NA	NA	NA	NA
WP_029464173.1\|3010313_3010496_-	NinE family protein	A0A220NRK6	Escherichia_phage	2.2e-12	62.1
WP_012125651.1\|3010492_3010903_-	recombination protein NinB	K7P6Y3	Enterobacteria_phage	2.1e-63	86.7
WP_140421392.1\|3010874_3011135_-	DUF3850 domain-containing protein	R9TML3	Aeromonas_phage	2.5e-22	64.8
WP_012125653.1\|3011131_3011389_-	hypothetical protein	NA	NA	NA	NA
WP_041460742.1\|3011526_3011877_-	hypothetical protein	F1C5C6	Cronobacter_phage	3.7e-53	88.8
WP_012125658.1\|3012144_3012981_-	DUF551 domain-containing protein	A0A2I6PID9	Escherichia_phage	1.7e-27	65.5
WP_012125659.1\|3013204_3014605_-	AAA family ATPase	F1C5C4	Cronobacter_phage	1.4e-260	98.7
WP_012125660.1\|3014594_3015491_-	hypothetical protein	F1C5C3	Cronobacter_phage	2.2e-153	91.3
WP_012125661.1\|3015677_3015956_-	lambda phage CII family protein	A5VW96	Enterobacteria_phage	9.9e-33	87.8
WP_041460603.1\|3016069_3016285_-	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	6.5e-32	94.4
WP_012125662.1\|3016402_3017065_+	LexA family transcriptional regulator	Q37946	Enterobacteria_phage	2.6e-119	93.2
WP_012125663.1\|3017238_3017664_+	hypothetical protein	F1C5C1	Cronobacter_phage	9.2e-38	88.5
WP_012125664.1\|3017676_3018009_+	hypothetical protein	F1C5C1	Cronobacter_phage	8.8e-36	77.2
WP_012125665.1\|3018017_3018263_+	hypothetical protein	NA	NA	NA	NA
WP_012125666.1\|3018312_3018567_+	hypothetical protein	NA	NA	NA	NA
WP_012125667.1\|3018610_3018952_+	hypothetical protein	C6ZR42	Salmonella_phage	6.7e-07	37.8
WP_012125668.1\|3018952_3019195_+	hypothetical protein	B1GS76	Salmonella_phage	2.8e-07	45.0
WP_012125669.1\|3019589_3019721_+	hypothetical protein	K7PHK2	Enterobacteria_phage	1.8e-08	67.4
WP_012125670.1\|3019708_3019855_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	5.6e-11	67.4
WP_012125672.1\|3019942_3020128_+	hypothetical protein	NA	NA	NA	NA
WP_012125673.1\|3020135_3020747_+	ERF family protein	A5VWA8	Enterobacteria_phage	6.3e-88	82.8
WP_012125674.1\|3020746_3021124_+	hypothetical protein	I6S1T0	Salmonella_phage	1.3e-48	76.4
WP_165756512.1\|3021288_3021453_+	hypothetical protein	NA	NA	NA	NA
WP_007893381.1\|3021463_3021625_+	DUF2737 family protein	A0A0K2FIU6	Enterobacter_phage	2.7e-06	56.9
WP_012125676.1\|3021621_3022134_+	hypothetical protein	F1C5B6	Cronobacter_phage	1.5e-13	53.8
WP_012125677.1\|3022133_3022322_+	hypothetical protein	NA	NA	NA	NA
WP_012125678.1\|3022674_3022929_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	2.4e-09	42.9
WP_012125679.1\|3022963_3023596_+	hypothetical protein	E5AGD3	Erwinia_phage	5.8e-28	36.7
WP_041460604.1\|3023636_3023990_+	hypothetical protein	NA	NA	NA	NA
WP_012125681.1\|3024216_3025380_+\|integrase	phage integrase family protein	F1C5B2	Cronobacter_phage	7.0e-229	99.0
WP_012125682.1\|3025578_3026832_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.1
3025395:3025440	attR	NA	NA	NA	NA
WP_004385346.1\|3026842_3027946_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-58	39.3
WP_004385347.1\|3028237_3029308_+	porin OmpC	Q1MVN1	Enterobacteria_phage	3.9e-109	57.1

Anti-CRISPR protein detection

Acr_ID: NC_009778.1|WP_041460602.1|3006518_3006710_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_009778.1|WP_012125414.1|2700572_2700752_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_009778.1|WP_041460602.1|3006518_3006710_+|hypothetical-protein

3006518_3006710_+

63 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|67	0.6666666666666666	1	1.0

2974742-3029308

NC_009778.1|WP_012125414.1|2700572_2700752_-|hypothetical-protein

2700572_2700752_-

59 aa aa

2690638-2702614

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_009778_8	Orphan	8.7\|2690959\|18\|NC_009778\|CRT	2690959-2690976	18	2690983-2691000	1

1. spacer 8.7|2690959|18|NC_009778|CRT matches to NC_009778 position: 2690983-2691000, mismatch: 1

cggttggcgtatccgtcg	CRISPR spacer
cggttggtgtatccgtcg	Protospacer
*******.**********

3. NC_009780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13279

Bacillus_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041460762.1\|956_1574_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_011998922.1\|1672_2440_+	membrane protein	NA	NA	NA	NA
WP_041460763.1\|2563_3622_+	hypothetical protein	NA	NA	NA	NA
WP_011998924.1\|3626_4157_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011998925.1\|4453_5662_+	MFS transporter	NA	NA	NA	NA
WP_032989735.1\|5977_6916_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_011998928.1\|7164_7707_+	hypothetical protein	NA	NA	NA	NA
WP_011998929.1\|7703_8243_+	hypothetical protein	NA	NA	NA	NA
WP_011998930.1\|8275_8971_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_011998931.1\|9027_9411_+	drug:proton antiporter	NA	NA	NA	NA
WP_011998932.1\|9464_10355_-	hypothetical protein	NA	NA	NA	NA
WP_011998933.1\|10516_11287_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_007854387.1\|11411_12104_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-26	34.2
WP_011998934.1\|12100_13279_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-17	24.4

DBSCAN-SWA_2

20987 : 22295

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011998941.1\|20987_22295_+	MFS transporter	Q6JIH2	Burkholderia_virus	6.1e-64	36.8

DBSCAN-SWA_3

29228 : 39848

Enterobacteria_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007873161.1\|29228_29972_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.1e-46	48.2
WP_011998950.1\|30050_31961_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-14	33.5
WP_041460766.1\|32393_32780_+	hypothetical protein	NA	NA	NA	NA
WP_049761377.1\|32817_33357_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011998954.1\|33434_33758_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_011998955.1\|33750_34149_+	amino acid-binding protein	NA	NA	NA	NA
WP_011998956.1\|34121_34847_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007798787.1\|34928_35750_+	alpha/beta hydrolase	A0A220NRX7	Mycobacterium_phage	3.6e-14	29.3
WP_011998957.1\|35796_37173_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_041460768.1\|37452_38652_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	Q6A202	Oenococcus_phage	4.4e-37	28.4
WP_041460769.1\|38639_39359_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_007780690.1\|39554_39848_-	NINE protein	M4ZS56	Bacillus_phage	3.6e-17	68.8

DBSCAN-SWA_4

47150 : 52621

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011998969.1\|47150_47564_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	5.2e-46	68.1
WP_011998970.1\|47608_48892_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.5e-171	73.1
WP_011998971.1\|48979_49315_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	2.0e-24	61.9
WP_011998972.1\|49404_50292_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_041460774.1\|50316_51195_-	DMT family transporter	NA	NA	NA	NA
WP_011998974.1\|51286_52621_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	3.4e-14	21.2

DBSCAN-SWA_5

59752 : 66615

Cronobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041460775.1\|59752_62413_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.7e-94	32.3
WP_094301165.1\|62988_63420_+	hypothetical protein	NA	NA	NA	NA
WP_071818053.1\|63705_66615_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	7.3e-09	43.5

DBSCAN-SWA_6

74942 : 75701

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011998998.1\|74942_75701_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.4e-14	28.4

DBSCAN-SWA_7

80517 : 81492

Gordonia_phage(100.0%)

integrase

attL 76360:76373|attR 81685:81698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
76360:76373	attL	NA	NA	NA	NA
WP_041460791.1\|80517_81492_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	4.0e-12	37.3
WP_041460791.1\|80517_81492_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	4.0e-12	37.3
81685:81698	attR	NA	NA	NA	NA

DBSCAN-SWA_8

89637 : 91296

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029039502.1\|89637_91296_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-09	45.9

DBSCAN-SWA_9

95570 : 97517

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041460781.1\|95570_97517_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-13	30.3

DBSCAN-SWA_10

100682 : 103397

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999014.1\|100682_103397_-	magnesium-translocating P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	2.1e-34	24.6

DBSCAN-SWA_11

127746 : 129922

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999030.1\|127746_128715_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-89	56.9
WP_007780816.1\|128722_129922_-	AAA family ATPase	A0A077SL49	Escherichia_phage	6.8e-179	78.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage