CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	2 crisprs	csa3,RT	1	2	1	0
NC_009783	Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence	2 crisprs	RT,DEDDh,csa3,cas3,DinG,PrimPol,csx1,WYL	0	1	20	0
NC_009784	Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence	2 crisprs	RT,csa3,cas3,cas5f,cas7f,cas6f	1	5	19	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009777_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009777_1

28648-28722

Orphan

Consensus_repeat	Method
TGTGGTACTTCTTGTGGTGACTCT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_009777_1

>merge|NC_009777|1|28648-28722|CRISPRCasFinder
TGTGGTACTTCTTGTGGTGACTCTAAACCAGCACCTAAAAAAGAATCTAGCTGTGGTACTTCTTGTGGTGACTCT

>NC_009777|1|1|28648-28722|CRISPRCasFinder
TGTGGTACTTCTTGTGGTGACTCT	AAACCAGCACCTAAAAAAGAATCTAGC
TGTGGTACTTCTTGTGGTGACTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009777.1\|WP_011998827.1\|37538_38294_-\|conjugal-transfer-protein-TraG	unknown	unknown	gnl\|CDD\|226259
NC_009777.1\|WP_011998818.1\|27835_28033_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998813.1\|24022_25222_-\|IS4-family-transposase	unknown	unknown	unknown
NC_009777.1\|WP_011998817.1\|27552_27849_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NC_009777.1\|WP_011998812.1\|22895_23912_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NC_009777.1\|WP_021018375.1\|32439_34179_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NC_009777.1\|WP_011998807.1\|19388_19820_+\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998825.1\|35588_36782_-\|type-IV-secretion-system-protein-VirB10	unknown	unknown	gnl\|CDD\|319755
NC_009777.1\|WP_080514194.1\|22559_22691_+\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NC_009777.1\|WP_011998829.1\|38517_39468_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NC_009777.1\|WP_011998809.1\|20692_20977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180688
NC_009777.1\|WP_011998815.1\|26002_26827_+\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NC_009777.1\|WP_011998821.1\|31892_32429_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998811.1\|21435_22479_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NC_009777.1\|WP_011998823.1\|34221_35238_-\|P-type-DNA-transfer-ATPase-VirB11	unknown	unknown	gnl\|CDD\|274301
NC_009777.1\|WP_011998826.1\|36774_37542_-\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	unknown	unknown	gnl\|CDD\|274296
NC_009777.1\|WP_011998820.1\|29679_31884_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NC_009777.1\|WP_080514193.1\|19801_19927_+\|DUF3265-domain-containing-protein	unknown	unknown	gnl\|CDD\|288509
NC_009777.1\|WP_005430722.1\|39477_39711_-\|EexN-family-lipoprotein	unknown	unknown	gnl\|CDD\|319975
NC_009777.1\|WP_011998830.1\|39723_40389_-\|conjugal-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|369643

Protein	Function_ID	Function_description	E-value
NC_009777.1\|WP_011998827.1\|37538_38294_-\|conjugal-transfer-protein-TraG	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	2.67871e-40
NC_009777.1\|WP_080514194.1\|22559_22691_+\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	1.93917e-05
NC_009777.1\|WP_011998817.1\|27552_27849_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.31909e-09
NC_009777.1\|WP_011998820.1\|29679_31884_-\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NC_009777.1\|WP_011998812.1\|22895_23912_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.02297e-36
NC_009777.1\|WP_021018375.1\|32439_34179_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	7.85652e-100
NC_009777.1\|WP_005430722.1\|39477_39711_-\|EexN-family-lipoprotein	gnl\|CDD\|319975	cd16341, FdhE, formate dehydrogenase accessory protein FdhE and similar proteins. This family contains formate dehydrogenase accessory protein FdhE and FdhE-like protein, found largely in gamma- and some beta-Proteobacteria, where the fdhE genes are almost always genetically-linked to the structural genes for formate dehydrogenases. FdhE is required for the assembly of formate dehydrogenase although not present in the final complex. In E. coli, FdhE interacts with the catalytic subunits of the respiratory formate dehydrogenases. Purification of recombinant FdhE demonstrates the protein is an iron-binding rubredoxin that can adopt monomeric and homodimeric forms. E. coli FdhE interacts with the catalytic subunits, FdnG and FdoG, of the Tat- dependent respiratory formate dehydrogenases. Site-directed mutagenesis has shown that conserved cysteine motifs are essential for the physiological activity of the FdhE protein and are also involved in Fe(III) ligation. The iron likely is redox active, suggesting that the switch from aerobic to anaerobic conditions may be important in modulating FdhE function. Alternatively, FdhE may be involved in an electron transfer reaction, similar to other rubredoxins.	0.00724744
NC_009777.1\|WP_011998809.1\|20692_20977_+\|hypothetical-protein	gnl\|CDD\|180688	PRK06771, PRK06771, hypothetical protein; Provisional.	0.000609505
NC_009777.1\|WP_011998826.1\|36774_37542_-\|TrbG/VirB9-family-P-type-conjugative-transfer-protein	gnl\|CDD\|274296	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation].	1.64183e-66
NC_009777.1\|WP_011998815.1\|26002_26827_+\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	1.58572e-09
NC_009777.1\|WP_011998829.1\|38517_39468_-\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	4.7225e-20
NC_009777.1\|WP_011998811.1\|21435_22479_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.14341e-20
NC_009777.1\|WP_011998823.1\|34221_35238_-\|P-type-DNA-transfer-ATPase-VirB11	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	3.64498e-121
NC_009777.1\|WP_011998825.1\|35588_36782_-\|type-IV-secretion-system-protein-VirB10	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	8.09727e-68
NC_009777.1\|WP_080514193.1\|19801_19927_+\|DUF3265-domain-containing-protein	gnl\|CDD\|288509	pfam11665, DUF3265, Protein of unknown function (DUF3265). This family of proteins with unknown function appear to be restricted to Vibrio.	2.58108e-07
NC_009777.1\|WP_011998830.1\|39723_40389_-\|conjugal-transfer-protein-TrbJ	gnl\|CDD\|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	2.85232e-15

>NC_009777.1|WP_011998818.1|27835_28033_-|hypothetical-protein
MIKRPFALVQILAVAFVLTKVTQNSSFAQEHQIVVTISIALISVAWAALSGMIWDMLKGSLYVEK
>NC_009777.1|WP_011998817.1|27552_27849_-|helix-turn-helix-transcriptional-regulator
MLKSKLTNISMVFNALGNETRLLIIHYLINQNEDSIRVGKIKDALGIPSSTLSHHLIVLSQTGALKQHKKGREIYCSVNQKCLRDAIMVFDKECCLNL
>NC_009777.1|WP_011998815.1|26002_26827_+|DUF2971-domain-containing-protein
MYHYTDLNGFLSIIQNNSLWLTDARAMNDSLEISWFGKLFAKELERSIEGLHLSLSQKEILDDFINSSLNSNLTPHICCFSKEGDLLSQWRAYADDGFGVSIFFDESAFNKVSLSQLPERLVDSTFYSDIIYSQEEQEVASKNLVDRTVNAINKISGNTRNDAYKTLPIREFWDIKANIELQSYFSKNPAFSEEKELRFIKLVELDKLKYKEKLRFRVTGGTIASYFELEFSKPSIKRVILGPKCKADGNTIRLFLDANGFEHVEVLKSKASYR
>NC_009777.1|WP_011998813.1|24022_25222_-|IS4-family-transposase
MRDIQILQQAIENQCPDIHKKRLRSLMLATKAVLDGSALTLTKIGRALDTDTTVKHAIKRIDRLLGNRNLHREKESIYRWHASFITRANPFPVVLVDWSDVREQLRYMTLRASVSVKGRAVTLYEQAFEYKNYNSPKSHQLFLDKLQSLLPQGCTPIIVSDAGFRNTWFRQVANKGWFWLGRVRGEVSIKCGEGAWLWNKTFYPQATDKPLFLGESQLARRSPLRCFAYLYKGQPKGRKAHRHSRTCQKHSAGKVFHKGAKEPWLLVTNIPNHVLNGVKITRLYAKRMQIEESFRDLKSPAYGLALRHNRTRCTKRIDILLLMALMAEIIMWWNGLIAMQAKWHYDFQANTIKHRRVLSIPRLGKEVRSHRRYRIKESQYHWAMVEYQRLTHTCGLGEL
>NC_009777.1|WP_011998812.1|22895_23912_-|IS110-family-transposase
MTQHKIIGIDLAKNIFFLVEINHKGKNLSRKKLQRSRLLNYVANQSPCIIAMEACSGAHYWAREFEKFGHDVLLYPPQHVKNQRRKQKNDYNDAEAIAELALYQRVYPVQHKSIEQQDIQSLIRMRRLCVTERTRLINQVRGLVAEYGIVIPKGKAAFRQAIPEILEEVENQLSPILRELLSRQYERYLYIDEQILWFEEKLSQTVKQFDNAKRLMSIPGFGPLTSQAVAVWLGSGLQFKTGRDASAAMGLVPKQDTTGGNVILLGITKRGNTYIRSLLVHGARAALRRAKFKSDKLSKWMLELQERRGSNRAAVALANKLMRIAWAVIAKNEEYQPA
>NC_009777.1|WP_080514194.1|22559_22691_+|DUF3265-domain-containing-protein
MCSRGILNAWHFHYALILVIKVVCGGFGIALLTYMVSPCFASQ
>NC_009777.1|WP_011998811.1|21435_22479_-|IS110-family-transposase
MRFYNNQHNYYCGIDLHARLLYVCILDSLGNKVLHKKIDADPDALLELITPCQDNIVIGVECMHCWYWVSDLCLDYAFDFVLGHALYMKAIHGGKTKNDRIDSFKIASLLRGGNFPIAYVYPRAMRATRDLLRRRTKIMRHGADLKAHVANTFSQYNQQSHNVQLRYPCAREQVRNQFDEPSINRSIDMDLNVIAFYTKELASVEHFIEKTAKQHNAQDYSLIQTVPGIGRILALTILYEIGNIERFPSVQNFASYSRLVKCKAESAGKQKGTNGNKIGNAYLKWAFSEAAVLYLRGNEPAKKYIQRLQKRMSKAKALSALAHKLGRCVYFMLRNKTVFDEKRFLPQ
>NC_009777.1|WP_011998809.1|20692_20977_+|hypothetical-protein
MEWSVLIVFVVLLIFIGHREISAMKYKHKLLERKIDFLLERSGLSLDKHFGVPAQVLDAVKSGNKLKALRLYREETGASLVDAQKVIEELWSDT
>NC_009777.1|WP_080514193.1|19801_19927_+|DUF3265-domain-containing-protein
MRNVLLTNCLRVIRHAWHFYHASGLVVKVGCGSFGIACLTP
>NC_009777.1|WP_011998807.1|19388_19820_+|hypothetical-protein
MAKQIWEMTPQDIQDHAVWQFPSWKDDSHDETVICQASQDDALDPNSNIIVRAKFFDANGNEFIGFIHYGLAEVEYSQPNMFVNGKTVGFWFGITKPNHNDLIRLNFPIVITSESVFGLEQITVTVEGYSYVNEASATCVMSC
>NC_009777.1|WP_011998820.1|29679_31884_-|DNA-topoisomerase-III
MIVYIAEKPSLAKAIFEGLGGNPQTQRGEGFYQHKEHVVTYCVGHLLETYDPDDYDEKYAKWTFDDLPISTVYPPTLKPIPDTKSQLQTVLNFIKKADTIVHAGDPDDEGQLLVDEVLNYAGNTKPVQRLLVADLNLAPVQKALANMESNEKYVPLGMSALARSISDKSFGYNLTRGCTLKGREKGFQGVLNVGRVKSAVMGLVNERTLANQNHQKSFYYDVYAQFECGENRIKAKYNTKESDQVDDKKRLISASNASFIQDSVTNRPGLVTLVVTKPEKKHAPQPLNLSALQQLCAKSYGYSAKKTLDIAQSLYETHKLLTYPRTDNRFISDEHYYQSSDILVAIGATCPSLTDSITNTNVDMTRKHKAFNTDKIEAHHAIIPTTKHGSQASLNKEERQVYELVSRYFIGLFYPESIRDKTKAMFEVEGYQFSATQSVLVEQGWEVLHSEEKETQSDHDGFDLATLKSNTATTCVESEVEQKETKPPKLFTESTLLAAMTRAASFIDDPELRAKLEAKDKDSNDQGSIGTEATRASILSQLAANTELISISEEKGYKEKVWRTTKQGQELCAALPNEIIKPDISAIWAEKQAFVKAGEMSVEDFIADVDSYITERIDDLDKNGINITSNTVPCPSCGKPLYRRKGRNGWFWSCSGYPECDKAYPDLQGKPDFRPRVKPVVSAHKCPTCSKGLIRRKSPKGKGKYFWACSGYPDCITTLFDRKGRPNYESAKSS
>NC_009777.1|WP_011998821.1|31892_32429_-|hypothetical-protein
MKHKLFMAAITAAFLLPVQPAFAASDDECAIWLCLPTGFPSGCSGAKKAFVKRIKKFKPPLPSFTSCLFSGDVPIGTPSNDTDMFARDGRAAYIPPRVECVKWETGKDWSRCSKTEVRPSQIIKNQSCHVNHKEGTSSPKYCSHTISYVETFQDGEQYGETYYFDNAGNTYIEGSTEH
>NC_009777.1|WP_021018375.1|32439_34179_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MFLFFTLLCLIGGLYGGGAAYYKLTNISLEHLTYHSLFDQWQAYSHNPDIKKFLVIGVAVSIAITLFPTLMAIVIAIASQEREEIHGSAKFATDMDLANSGLFPNPKAKNKKPSILLGKMPKGRFKGRFIELESSQFVEVPAPTRSGKGVGIVIPNCVTYPDSLVCVDIKFENLVKSGGFRQQCGQAVFLFAPDGYAIDEQAREREELRTHQWNPYDYVRRSPVFRVSDVLNIANSLYPISGDKGDIWNELAGKLFKGLSCWMLDTESITGITPSLPYVLKLGGIDGGLRAWMRREIKNDYVSDDARFEFNNCLSMAEETYSSVESNLLSPLAIFSDRVTAAAVSGSDFDFRELRKKRMTIYVGCQPANLKNFGKLFNLFFEQLISENTRTLPEHDDTLKYQCLGLLDEFTALGRVKQIEKAISYTAGYNLRFLTIYQDEGQLEEVYGRENAKNIRKNHGVKVVYPPKEVDDNVRRLSDTLGTKTVKKRKVSRSTGKGSSRTTSEDELKRPLMMPHEIVELGFEKHPIAKELGIKTLILKENQRPFIAEKIIYFEEPVFAERVKYSEANIPEIPRLKLH
>NC_009777.1|WP_011998823.1|34221_35238_-|P-type-DNA-transfer-ATPase-VirB11
MNTIDKAATVNQLLSMTGLRHYLDLEGLTEIAINRPNEVWFDRGNGWERDALPNLSLNMCSNLAKALATFAGLTIPLGEANPVASVIFPDGERGQIAIPPATENGIVSMTIRKPSLTRFALSSYQESGRFSDFREMDVNRVELTPVQEQLLTLKQNGDMSQFFSMAVKSKLNILLVGGTGSGKTTVMKAMVDEYPTDKRLFTIEDVHELDLPNHPNHLHLFYKQGGLTPKQIIESCMRMKPDHVLLAELRGDEAWTYLEMLNTGHEGSITTIHANDCYSTPARLAGLVKQSEVGQTLDYHHIMRTIRTSIDVIAFFKHTHLVELFYDPVEKNRLLSEG
>NC_009777.1|WP_011998825.1|35588_36782_-|type-IV-secretion-system-protein-VirB10
MSDDNTIPSAYESANLDRGELTVSGRKKKNKAVIVIALVILSLVVVAVGVLFAINQFREAEVETKPLQPESTAEVIGVEKGTVGNDSAWFEKAKRDHEKDKAQQERAAQWKRKQELKQAKAQATQQQPVTVPKTDVPEPNVAKQPSATSKRGKKAPPTPQERRLMGSLMVNVESGNAASSQSTTEPASYDNSYDAPTFAMGHAAKRKQGGLDFLLKHGSIIPCALYSQVISDYQGIVMCRVTQDVYSANGKALLVERGSMLTGSQNVQLEAGKNRVFTTWADIETPNGIAIRIDSLGAGRLGASGNEAWVDNHFKERFGGAILLSFLDDAFGALAEKAASSDGDITFDSSTENASNMAEKALESSINISPTGYTQIGQRINIIVARDIDMSSVYAFE
>NC_009777.1|WP_011998826.1|36774_37542_-|TrbG/VirB9-family-P-type-conjugative-transfer-protein
MMKQLIVSLACLMAFSTHALTLPKHQGKDRRIVYAEYDPSDVIAIRTKVGVATLIQLDKNETIVGEHSGLGMGDAAAWGFNVRGNNVFFKPQAKQPNTNLTIVSDLGRTYSFELFTNKQPFYVVKMRYPKPKKANTTPLKAPCTDGKYNFRYVKWGDEELAPAYAWDDGRFTCMKFTKNAELPVIYQINADSKESLVNYHIEQDTIVIHSVANEYRLRLGERVLGVLSHFVEFAGHNQKASSIKATRVIKEDEHE
>NC_009777.1|WP_011998827.1|37538_38294_-|conjugal-transfer-protein-TraG
MSTTIDSALEHNHTKAEKKPTAKHQKQADAYLEEIKQFEQDRIEIAKKNAKTAWKVATGSCVLALVLGITIVVMMPLKTVDYRLLYIDPQTGMTQIIQPLADAREITYGEALDKHWLNRYVITRGSYQWQTVQDAFDYVKLTSRHDVFSAYSTQLRAKNSPVEVFKDYKKIRLEDVAISFLPTRQDQMLAQVSFTKVVLNSDDTPDTAYLPTKWSATVTFDYLKEIKTESERQLNPLGFRVTSYQENRVIQ
>NC_009777.1|WP_011998829.1|38517_39468_-|type-IV-secretion-system-protein
MFDRLFDFVHLITQENIASFVGIFTATITPLIGACVVLYAIYLAFQALYDAENMMIMESLKFIASLALCTTVAFNTSWYLNSIVPMVYYSGDDIANAMLGSTGSGSLQTMFDTMLKQFADTWGEVSFGMSDSWGQSIYFMLLAFLILIGYLPFIVVATAYLLIAKVMVSFLLILGPLFIMFAFFPSTRDMFKTWTGQCLNYVLLVVVYPIAFNLFTRTLEHVIFGGSATAIGLSTVIMTIILFGCCILISVQIPVFCSSLSGGVGINGLVSNMGMGMRSLSNAAKGGAGAAKRAGQGTYNGAKSLGDKFKNRIRPG
>NC_009777.1|WP_005430722.1|39477_39711_-|EexN-family-lipoprotein
MKQIISLIAFSFLLTACSSEETKTIEYYSAHLDEAKTVKIECEKKTATLSENCKNAIKAVLDDSYKKSMFGDGITYE
>NC_009777.1|WP_011998830.1|39723_40389_-|conjugal-transfer-protein-TrbJ
MLKRTTLALCITLALNASTQASGIPVVDVAGITQMVVDSAQRAQEFTQSISEARNRLNQLKSQAEHYKSMVEGHYGFEEILSDPNLNDVIDLSAYSDLYDAVDDISDLRSEFGLYSDDPVIQRRYDMQLKQLRFQEMLYERSTERNERMSRLLSQFGSATTPAAKEDLANSINFETMQMQNEQRMMDSMSDMLERQKQIEHSKQLNDSYQRSMYGDGITYE

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Crispr_ID: NC_009777_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009777_2

52769-52868

Orphan

Consensus_repeat	Method
TTTTCAATTGTGCAATTTAGTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009777_2

>merge|NC_009777|2|52769-52868|CRISPRCasFinder
TTTTCAATTGTGCAATTTAGTTAGGGGGAGTGGGAAGGGCAATTCAACAACATCAGTGGATTAGAGCTGTATATCGTTTTTCAATTGTGCAATTTAGTTA

>NC_009777|2|2|52769-52868|CRISPRCasFinder
TTTTCAATTGTGCAATTTAGTTA	GGGGGAGTGGGAAGGGCAATTCAACAACATCAGTGGATTAGAGCTGTATATCGT
TTTTCAATTGTGCAATTTAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009777.1\|WP_011998844.1\|49713_50112_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198403
NC_009777.1\|WP_041853714.1\|57955_58429_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009777.1\|WP_011998841.1\|47030_47510_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998840.1\|46386_47034_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NC_009777.1\|WP_144080979.1\|48213_49014_+\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998838.1\|45336_45927_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_009777.1\|WP_011998845.1\|50224_50992_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_009777.1\|WP_021018379.1\|52010_52256_-\|prevent-host-death-protein	unknown	unknown	unknown
NC_009777.1\|WP_021018378.1\|45948_46374_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998799.1\|57053_57407_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_009777.1\|WP_011998851.1\|53128_53581_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998846.1\|51012_51309_+\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998852.1\|53777_54764_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_009777.1\|WP_011998854.1\|55449_56994_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_009777.1\|WP_011998859.1\|60456_60678_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998856.1\|59172_59937_+\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998860.1\|60685_61888_-\|hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011999494.1\|57403_57715_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	unknown
NC_009777.1\|WP_011998853.1\|54851_55247_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226875
NC_009777.1\|WP_011998849.1\|51661_52000_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009777.1\|WP_041853714.1\|57955_58429_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.9751e-13
NC_009777.1\|WP_011998838.1\|45336_45927_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.58768e-10
NC_009777.1\|WP_011998799.1\|57053_57407_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.11042e-39
NC_009777.1\|WP_011998853.1\|54851_55247_+\|hypothetical-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	2.97133e-05
NC_009777.1\|WP_011998852.1\|53777_54764_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.22948e-10
NC_009777.1\|WP_011998840.1\|46386_47034_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.35789e-131
NC_009777.1\|WP_011998844.1\|49713_50112_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	4.54491e-06
NC_009777.1\|WP_011998845.1\|50224_50992_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.67619e-54
NC_009777.1\|WP_011998854.1\|55449_56994_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.47511e-124

>NC_009777.1|WP_021018379.1|52010_52256_-|prevent-host-death-protein
MRTETVSFLKKHAADLPLDDAMTITQNGKPIYVVESYEERQRRDQAIALMKLVSFGREDMTAGRTTSSDKFKERLAARKSK
>NC_009777.1|WP_011998849.1|51661_52000_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSTNIVYTEAFENMTDDQINYLSLWSEEDVVVERIENLVEKFESNITDNPEMYPPCHELTTLGVYNIRQFSFGGFKLLYEYHEHIDTAAALALVRDRQDLQSMLVDYCLIHK
>NC_009777.1|WP_011998846.1|51012_51309_+|hypothetical-protein
MAKLKARGAITIASSTEQKNEKSQAITTVKKKVTTSYKVPPLTLRMSLKDKESIAGWVDDLQKLSERNVSAAKLFRALALYRDNIDDDELIKLIDKMN
>NC_009777.1|WP_011998845.1|50224_50992_+|ParA-family-protein
MKTKVISAANQKGGVGKTTTLVNLGAELARKRKVLVVDLDPQGNCTKTLTGQRHFQFEETVAAMFDKPKVVSIVDLIRPALLDGESIQNLDVVPADFQLSRIIETSLTKINRERILEKQLAKLGETYDFILLDTPPNLSLTTLNAIQASDLILIPVDSGAFSLDGISPLLEAVSEIKDDEANYLILRNEVDVRNTVINEFIEEELEVAKDKVLSVTIRRSEHVSQANAVSAPVRFYKSGSLVNNDYRKLASLIAG
>NC_009777.1|WP_011998844.1|49713_50112_+|GIY-YIG-nuclease-family-protein
MIESKSDYNSRKKQVIDSIKIELDSMGVIYEPPSYIYTLELEDGKYYVGFSDRILARLSMHFMSGGAAWVKKYKPVKILDVRRGSIELESLRTLEVMREFGVSNVRGGKWCELRDFTPAELLELNKRIRSLG
>NC_009777.1|WP_144080979.1|48213_49014_+|hypothetical-protein
MYRANRKARVRECIEIHHDAVAAEKARLKAKGKAFTNLEIGFTKRRVLRDKKNPKVINLPLEFATILKGCEEFIDNPSRFPALDIWVSEMRNRQARELVAKVLACLLSNTDMISGRVGKPTEAGMKTLSYYQLQEDYALRFGEYIAPKSFGKAIKYLKQAGYFHSEAINIRMEDGEGAVRSAPAYKQFSERFFSDLKVVRYSNVAESIVATRKRQMKEGLRHTWVSFREIANGVRQIFLNANKFESIAESTGRVFEAYLPLHPNPH
>NC_009777.1|WP_011998841.1|47030_47510_-|hypothetical-protein
MKLKILFLSFLSFGLAGWGVAITKPDKLDHLSSFMTYNYVKSVVWYHSRGKLKELESIILNDDLSDEEAIKRKIQNMLKHRTSVYLREFNSLDAPIQNVGNHYEEMFEFAPFLNDVYEVVFSDKDVHLKLSLIADIMEAYQTRANNQLLDLMNNKEARL
>NC_009777.1|WP_011998840.1|46386_47034_-|isoprenoid-biosynthesis-glyoxalase-ElbB
MKKIAVVLSGCGVFDGAEINEAVLTLLALEERGIAYQCFAPDKPQLHTINHLKGEDKEQARNVLEESARIVRGSVSALSELDEQDFSALIIPGGFGVAKNLSTFATDGADFSIDVEFQQVMTAFASKKKPVGYMCIAPVLLPKVYNGVRCTIGYDEETASVINSLGGLHVDCTVDNIVVDNDYNVVTTPAYMLAGSIADAKKGIDKLVEQVASLI
>NC_009777.1|WP_021018378.1|45948_46374_-|hypothetical-protein
MENTYDILCTIGVSAFLGVGLWLALELLPFQSNGNVTIATTLEEKESPKAGLLFDASQNAVLRGEDEILRIKQGSTNHRFISYLFEHEGQDIPIEQLYQDLRLPEDTYLKKLIANTKLPKEIRSQAFVVSKSTIRFQTTLD
>NC_009777.1|WP_011998838.1|45336_45927_+|LexA-family-transcriptional-regulator
MKTLGQRLEELRVNNRLTKKDVGHVAGVTGTTVDKWEKDLIIPRDAKLKRLAEHYNVSFEWLRVGVDGAKVTPVPESFAVSIQSYKEGDESVFFDARLLPSGHSERLVYVQVEGHSMGDILPDGSKLIVDLEDRHYKDDKLYVFKTQDFMSIRRLSFTSTGVRLQSLGSQKDEVLTFQQLSKVDVLGRVISSICPR
>NC_009777.1|WP_011998851.1|53128_53581_-|hypothetical-protein
MKAVRLEEVESIMRWRDRSSAKDGHLQREMFDKYITLMVAWERLKRGIATERDQLICYQIHKGLMKGLCQGDKVPLMHLGARVESMVEPDKRITLRKPMKIHQAIAWVADMDGRSHEAVRKQWNKWRNATQDEKDDVTRKFMSCKDADFT
>NC_009777.1|WP_011998852.1|53777_54764_+|hypothetical-protein
MARERAFSDQQVIEAANALLVEGKNINGTSLRNKIGTGRPSALMSAFKALEDSGEILAPMLPDSTEQTITHQELPPEIAERLSVMLGDVEQLVHQINDHAHYTVEQRLNQAIAEANERAANAAKREAESIQEQDKAFEQLEDALESNADLQEQLKQEHKESSRLNAALNVAQSETKAALDTVSERDERLAEMQKQIASMQKQLNTAESDKAKAEGQAEQLGKQLEEKSEEMAKLNASLKTSEKELGSLQGQVVSLTEQIANQKATNEQLQGKFDEEKAAHIRAESRIESLSSELNKKNIALLETQASLGEAEKLSAKLEGQLMQYQEN
>NC_009777.1|WP_011998853.1|54851_55247_+|hypothetical-protein
MFLSHGVNEQGDLVSILEVSAGRVPLSCPFCGQGLIAKKGAQKEHHFAHDGQTCADAKAILQMTALPLFDMDMGLSKTEITLLEKLSRWRSFSRTWLSSKQRAVFDELVVSGLVDFQEGDDKPRLSNVRRQ
>NC_009777.1|WP_011998854.1|55449_56994_-|IS66-family-transposase
MKKTPVINPESQDVAKLQAMVKALLLSQERKESQWKQERQSLLEQLKLAFDRQFAKRSEALKPYDESQGDLFNEVECEAAKEEEVEVVTTTTTTKKRGKRKPLPKTLPREVIELDLDDHEKQCACCQHSLHKIGEDRSEKLEFSPAVLKVLEYVRPKYACRQCEQTEDNSHIVQKPAPQSIIPKSFATESLLANIILGKYQYAMPLYRQESLFTQSGIELSRTTMARWVIQVSEKFKPLYAALKAHLLQQVVVQADETPLNVLKEDKKCYMWLYCSGADSPDAALPNVKNIALYDYQNSRARVCPVAFLGDYSGYLQTDGYGAYDGLHHVTNVGCLAHARRKFMDAKKLQGKGKSGKADKALAKIQKLYGIESRLKGATVETRKAERQQHAKPILDELHDWMTSQQVISSSPLGKAIKYTLGQWPKLIRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSNTPNGADASAMLYSIVETAKANGLILYDYMVKCMKELAKAEPDIDALLPWNFKH
>NC_009777.1|WP_011998799.1|57053_57407_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MKHMLSAPEIYLYRESVDFRKSINGLAAIIESDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPAKEQNEVFTLTQFELDRLLSGFTIIGHKPVQINDFTMT
>NC_009777.1|WP_011999494.1|57403_57715_-|IS66-family-insertion-sequence-hypothetical-protein
MGKRHTNQEWQTLIEQSESSSLSTLAFCKLNELNPSTFYAKRQQLKKADVSQGFVRAEVVEKTTKYQAQIATANMTLLINDVELSIPQGTPAAYLAELIGALS
>NC_009777.1|WP_041853714.1|57955_58429_-|GNAT-family-N-acetyltransferase
MNVRKAIKQDSGKLLELIGHKAEFDRSMKGFDGEISTTKEKIERTLFGDYPFAHALLLEVDGEVQGFALFHYRYSSFRGEPSIWLDDLLVIGKYRSKGYGAELMHALKSEAQKSLTTHISWTASPHNTKAHEFYKKLGAEVERMDGQRPYFRWEMYG
>NC_009777.1|WP_011998856.1|59172_59937_+|hypothetical-protein
MLIFNCTKAAANFLSPHKSKESKPLIQAVPDFDIEDVGSPQAPISQWLVQHTKQLGQDILYVCHVQHRFTMVFTGVEKGNWLQFMQCFWERLVNHFCWLIEELSLNINSSPQNWVDNIRTLHSQNGERPIFCLRYSPSVNASAARFRSTFETALYEIGCLPNDEEAGEFEFHENSRIHFSGCKENMFYPAHELLCNGLEMYMDVSGNDLDAFKSLSFNYFEQTLSDMFNVSTITPEDVAMVLNTLTTEKGTNNR
>NC_009777.1|WP_011998859.1|60456_60678_-|hypothetical-protein
MVWLQDSLGVLLVAAVFFYGGLKFLHWGRTGVLDRRDIKDNPRYMKLATACGYFSIGFSVFIVCLMFFLKWPM
>NC_009777.1|WP_011998860.1|60685_61888_-|hypothetical-protein
MPFYSSAGATVPPPQRVYVDKVTSPDGRDLEWAQGERLASVDFTDLAAKIRVSRFTNTYYFEDEPGTIKSSSRTGLFFEFKNSEDFTLGDEAIFEVKFLTPDRSRFVTHRSCHTKVVFGGPSQETCETKFVKHSIKITRDSKGALRLKSDSDDFLSYGYKKSGGREYFEVFSTIDLMTHWNLKDKDAVPYIVLTAFNANSNSSKSVEAPAVLAKYTGVQNAAKVWDVYKPTVESYIRASNMPDIRPVVQVGVSVQVRQVEVVGTVTSDFKDIDVAFSGGVAISNTDLEINASVMGFATDSLESVTSGTSTTVSGELGSAVNVGGALSYNSNNELIGAGISVGFGSAIDVDLSVTESTVVYTTRTSSNESERGDGNRRDGYNEREGRTSRVDGEGGRSIEH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_009783.1	1502001-1502027	0	1.0
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_009783.1	2599339-2599365	0	1.0

1. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to position: 1502001-1502027, mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

2. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to position: 2599339-2599365, mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_022271	Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence	28116-28142	0	1.0
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	28672-28698	0	1.0
NC_009777_2	2.1\|52792\|54\|NC_009777\|CRISPRCasFinder	52792-52845	54	NC_022271	Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence	52236-52289	0	1.0
NC_009777_2	2.1\|52792\|54\|NC_009777\|CRISPRCasFinder	52792-52845	54	NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	52792-52845	0	1.0
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	KU737346	Bacillus phage Vinny, complete genome	40975-41001	5	0.815
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_024207	Bacillus phage Evoli, complete genome	40370-40396	5	0.815
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	NC_018856	Bacillus phage Bastille, complete genome	14622-14648	5	0.815
NC_009777_1	1.1\|28672\|27\|NC_009777\|CRISPRCasFinder	28672-28698	27	MK448855	Streptococcus phage Javan150, complete genome	7605-7631	6	0.778

1. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to NC_022271 (Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

2. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to NC_009777 (Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence) position: , mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

3. spacer 2.1|52792|54|NC_009777|CRISPRCasFinder matches to NC_022271 (Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	CRISPR spacer
gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	Protospacer
******************************************************

4. spacer 2.1|52792|54|NC_009777|CRISPRCasFinder matches to NC_009777 (Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence) position: , mismatch: 0, identity: 1.0

gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	CRISPR spacer
gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	Protospacer
******************************************************

5. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to KU737346 (Bacillus phage Vinny, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  ***

6. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to NC_024207 (Bacillus phage Evoli, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  ***

7. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to NC_018856 (Bacillus phage Bastille, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  ***

8. spacer 1.1|28672|27|NC_009777|CRISPRCasFinder matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 6, identity: 0.778

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aagccagcacctaaaaaagaagcagct	Protospacer
**.****************** * . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12862 : 56994

Leptospira_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021017764.1\|12862_14407_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998799.1\|14467_14821_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011999494.1\|14817_15129_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998802.1\|16424_16772_-	hypothetical protein	NA	NA	NA	NA
WP_011998803.1\|16783_17122_-	hypothetical protein	NA	NA	NA	NA
WP_086028461.1\|17321_18445_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.0e-23	34.3
WP_011998807.1\|19388_19820_+	hypothetical protein	NA	NA	NA	NA
WP_080514193.1\|19801_19927_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_011998809.1\|20692_20977_+	hypothetical protein	NA	NA	NA	NA
WP_011998811.1\|21435_22479_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.6e-06	26.7
WP_080514194.1\|22559_22691_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_011998812.1\|22895_23912_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011998813.1\|24022_25222_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-101	47.8
WP_011998815.1\|26002_26827_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_011998817.1\|27552_27849_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011998818.1\|27835_28033_-	hypothetical protein	NA	NA	NA	NA
WP_011998819.1\|28170_29208_+	permease	NA	NA	NA	NA
WP_011998820.1\|29679_31884_-	DNA topoisomerase III	NA	NA	NA	NA
WP_011998821.1\|31892_32429_-	hypothetical protein	NA	NA	NA	NA
WP_021018375.1\|32439_34179_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_011998823.1\|34221_35238_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_011998825.1\|35588_36782_-	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_011998826.1\|36774_37542_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_011998827.1\|37538_38294_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_011998829.1\|38517_39468_-	type IV secretion system protein	NA	NA	NA	NA
WP_005430722.1\|39477_39711_-	EexN family lipoprotein	NA	NA	NA	NA
WP_011998830.1\|39723_40389_-	conjugal transfer protein TrbJ	NA	NA	NA	NA
WP_021018377.1\|40391_42722_-	conjugal transfer protein TraE	NA	NA	NA	NA
WP_011998832.1\|42684_43056_-	hypothetical protein	NA	NA	NA	NA
WP_011998833.1\|43058_43376_-	hypothetical protein	NA	NA	NA	NA
WP_011998834.1\|43390_43993_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_011998835.1\|43982_44342_-	TraY domain-containing protein	NA	NA	NA	NA
WP_011998836.1\|44395_44578_-	TraY domain-containing protein	NA	NA	NA	NA
WP_011998838.1\|45336_45927_+	LexA family transcriptional regulator	H9A0Q4	Staphylococcus_phage	2.1e-08	26.0
WP_021018378.1\|45948_46374_-	hypothetical protein	NA	NA	NA	NA
WP_011998840.1\|46386_47034_-	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_011998841.1\|47030_47510_-	hypothetical protein	NA	NA	NA	NA
WP_144080979.1\|48213_49014_+	hypothetical protein	NA	NA	NA	NA
WP_011998844.1\|49713_50112_+	GIY-YIG nuclease family protein	A0A0P0YND3	Yellowstone_lake_phycodnavirus	1.3e-12	41.8
WP_011998845.1\|50224_50992_+	ParA family protein	A0A1X9IGI7	Lactococcus_phage	5.2e-15	32.8
WP_011998846.1\|51012_51309_+	hypothetical protein	NA	NA	NA	NA
WP_011998849.1\|51661_52000_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_021018379.1\|52010_52256_-	prevent-host-death protein	NA	NA	NA	NA
WP_011998851.1\|53128_53581_-	hypothetical protein	NA	NA	NA	NA
WP_011998852.1\|53777_54764_+	hypothetical protein	NA	NA	NA	NA
WP_011998853.1\|54851_55247_+	hypothetical protein	NA	NA	NA	NA
WP_011998854.1\|55449_56994_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.6e-71	34.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009783_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009783_1

1693071-1693188

Orphan

Consensus_repeat	Method
GAGGATGCAATAAGCC	PILER-CR

2 spacers

WYL

The CRISPR arrays of NC_009783_1

>merge|NC_009783|1|1693071-1693188|PILER-CR
GAGGATGCAATAAGCCAAACTCAGCTGTCGACTGTGCCACTAGTTAGAACGAGGATGCAACAAGCCCTCAGGTCCACAAAGTGTGGAAAGCGTTCTAAAGGTGAGGATGCAATAAGCC

>NC_009783|1|1|1693071-1693188|PILER-CR
GAGGATGCAATAAGCC	AAACTCAGCTGTCGACTGTGCCACTAGTTAGAAC
GAGGATGCAACAAGCC	CTCAGGTCCACAAAGTGTGGAAAGCGTTCTAAAGGT
GAGGATGCAATAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009783.1\|WP_012127519.1\|1703279_1703579_-\|T3SS-regulon-translocated-regulator-ExsE2	unknown	unknown	unknown
NC_009783.1\|WP_011999348.1\|1689566_1690760_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009783.1\|WP_012127512.1\|1694437_1694776_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_012127515.1\|1697444_1698224_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_012127507.1\|1691258_1691831_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_012127514.1\|1696387_1697242_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_009783.1\|WP_012127504.1\|1686042_1686531_+\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	unknown	unknown	gnl\|CDD\|372841
NC_009783.1\|WP_012127508.1\|1691978_1692362_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_080514117.1\|1681171_1686046_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NC_009783.1\|WP_012127518.1\|1702568_1703135_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_012127146.1\|1688226_1689420_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009783.1\|WP_012127502.1\|1679765_1680887_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_012127520.1\|1703586_1704033_-\|CesT-family-type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|341101
NC_009783.1\|WP_012127499.1\|1676474_1677596_-\|ISAs1-like-element-ISVha1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_009783.1\|WP_012127517.1\|1701159_1702572_+\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_021017798.1\|1694931_1696254_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
NC_009783.1\|WP_012127511.1\|1693421_1694435_+\|integrase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372340
NC_009783.1\|WP_012127501.1\|1678526_1679447_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290455
NC_009783.1\|WP_012127516.1\|1698227_1701167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223496
NC_009783.1\|WP_086028364.1\|1686675_1687853_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NC_009783.1\|WP_011999348.1\|1689566_1690760_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000328644
NC_009783.1\|WP_021017798.1\|1694931_1696254_-\|IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	1.15356e-20
NC_009783.1\|WP_012127516.1\|1698227_1701167_+\|hypothetical-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.26e-05
NC_009783.1\|WP_012127514.1\|1696387_1697242_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	5.00779e-35
NC_009783.1\|WP_012127146.1\|1688226_1689420_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000305139
NC_009783.1\|WP_012127499.1\|1676474_1677596_-\|ISAs1-like-element-ISVha1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	4.70799e-32
NC_009783.1\|WP_012127520.1\|1703586_1704033_-\|CesT-family-type-III-secretion-system-chaperone	gnl\|CDD\|341101	cd17018, T3SC_IA_ExsC-like, Class IA type III secretion system chaperone protein, similar to Pseudomonas aeruginosa exoenzyme S synthesis protein C (ExsC). This family includes type III secretion system (T3SS) chaperone proteins similar to Pseudomonas aeruginosa and Aeromonas hydrophila ExsC (also known as exoenzyme S synthesis protein C). P. aeruginosa ExsC, a member of the type IA family of T3SS chaperones, is unique because, as part of the signaling process, it binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. However, in Aeromonas, although ExsA is likely the master regulator of the T3SS, there is little evidence of ExsC and ExsE involvement in the regulation of the T3SS.	3.08581e-42
NC_009783.1\|WP_080514117.1\|1681171_1686046_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.66366e-19
NC_009783.1\|WP_012127504.1\|1686042_1686531_+\|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin	gnl\|CDD\|372841	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system. ToxN acts as a toxin, it is part of a type III toxin-antitoxin system. It acts as a ribosome independent endoribonuclease. It interacts with, and is inhibited by, the RNA antitoxin, ToxI. Three ToxN monomers bind to three ToxI monomers to create a trimeric ToxN-ToxI complex.	2.14901e-13
NC_009783.1\|WP_012127511.1\|1693421_1694435_+\|integrase-domain-containing-protein	gnl\|CDD\|372340	pfam12835, Integrase_1, Integrase. This is a family of DNA-binding prophage integrases found in Proteobacteria.	4.40117e-09
NC_009783.1\|WP_012127501.1\|1678526_1679447_+\|IS5-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.88072e-56
NC_009783.1\|WP_086028364.1\|1686675_1687853_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.79953e-99

>NC_009783.1|WP_012127508.1|1691978_1692362_+|hypothetical-protein
MKKTMKLLISVAFLSSPAMATVEVDSVQLLSRFQEPISSVFEGQTIRYETGVEIIDTKQGVFYMDIDINGENVLHDKKSVSDDHPPAYDKYYALFTPESAEIGTIRLCAYSLEKPDRKICDSKLYNQ
>NC_009783.1|WP_012127507.1|1691258_1691831_+|hypothetical-protein
MKLSNICLAMTFGFFSISAMCSQNDFYELVNDDGVDISFRKTEQSEGKNIFSLYKQKENNGTSYTFFPAKEGVEKGDWAYVNHSSTRLDAIDVCKNYTVGGKTWFLPSSGIITSAIVSGDKKLMNEIKKWQDEENSFFGIGWVSDDIQPQHTEFNFVYSDIFEPQNPVKIVPYENIGEEYTMVICHSEQS
>NC_009783.1|WP_011999348.1|1689566_1690760_-|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVIPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSASPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009783.1|WP_012127146.1|1688226_1689420_-|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVIPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSACPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009783.1|WP_086028364.1|1686675_1687853_+|IS3-family-transposase
MTKRTRRTFSPEFKLEAAQLVVDQGYSVVEAAKAMNVSKSAMDKWVRQLKQERQGITPKASPLTPEQIESRELKKRIAELEDHNEIIKKGYSSVDVGLTEKFSIIERLKQSYSILKLCSIFGVHRSSYKYWKTRPKTIPVHEVQIRALVQEAHTASNGSAGSRTIASIVTNAGTSLSRYRARKIMKMLGLVSGQLPKHKYRKQPLEHVEIPNHLERQFAVTAPNQVWVGDVTYVWAGSRWAYLAVVIDLFARKPIGWAMSFSPDSQLTVKALKMAYESRGMPTGVMFHSDQGTHYTSRKYRQALWRYQIKQSLSRRGNCWDNSPMERFFRSLKTEWVPVSGYRSLEDAWQSIVGFIIRYYSQIRPHQYNGGLTPNESERLYWETYKTVANFS
>NC_009783.1|WP_012127504.1|1686042_1686531_+|type-III-toxin-antitoxin-system-ToxN/AbiQ-family-toxin
MNHELSTDIPVDSSCHNAKASINLLQLILSASNAALLRLLPSTMTFAFDNYSGIRVYIVIVLQIDEVQYLTPLTSHKAKQDKLKGGLSTIYKLHQDGNGYNKLGMIQLNSMNPVIDCVISELDVDPQGDPHKSMLQCQIKFIKKNSDKILIVLETLQVGSRK
>NC_009783.1|WP_080514117.1|1681171_1686046_+|RHS-repeat-associated-core-domain-containing-protein
MYSSAHSNINLISGQPDPQTGLYSFSYPIGNFLSSYGFGPSISLQLTFSSLTALRPLSAPDENPLMLGAGWQVNLTQYSNVTERLSLGKGQSYVRLGETEGEWSLDYALKDIRVIEDSENIYVYHKDGTLETLTFINDSHDVAYVSTIRNAAGRTVYFDYTFKNGVNLLSALRDEEITLLEVTYGDGMTTFTSYPGTGGEAVSTVYYGESIYKIVSPLGEETSFYYKTFEQNGYRGYLITQVNYADGSQETVYYDNRLDLPLGAPINYQPSLSQHVRTNASENPDIITDFNFGEGEDGDFNYWGNNSGVDWNDNRDTLAEYGGSYAYQCSTVCGDKRTRYRFNKFHQLFEQIETTDDIHIKTTRMTYFGNDTLPQSLQTDVRYLLMSSTLMEVTAPEGTRTFEQTFDYDEWGNLLAQTEVSGVMHRLSYYPPEGEGNSCPAHPFGFSSFPREKVAVSADGLFEKHYDLSYKAIPSADGTFDNVRLSSVVYGDDTFSLSYFEPGDTGGIQGELKRFSTLVDGITTFIDMHYAQGDDSLQQTRTLTGADGLSARQHNTTSRWTGDILSETDLEDVVTAYSYDLSGRLVARTHASGTDYESTVTVVYDNLPDVTDLPDGLLRVGKRVQVRTPSGVTHVYVDGEQRSLFIYKKDEHGSMKKVAESRYDEQGRLLSKAVWDHVYSESATEPLYDCINRVQYTYGVWGEVTRETYHDGTVRDKEVDPVAMTVRESLSNGEHRLSGRLTRLDLFGNPVSQVRLAVDGEAYSETTLTYDGFGNRQSVTTPTGRTTCVEERDKFDRPLSVIDYDGSRHDFRYLNGSIGAMLVSINTLPGSNFSKETSVTRGIQSYDGLRRIVDRSVNGISREYEYTGSSRVPSSMTNGRGQRISVDFIPEIGALSSVEIASDIQQYSYATQDGSEVPPGVLLGASNGNGSYAYEYSPEGRLKKATQSSPGGATSEVETTQYLLTGGPLERQAADRVIGSKLDNWGRLAASRDGDIQTKVERDDFGRIETIKAYQEGELKQKTTIIYDDYNREVQRVTASPYQEGIFSIDSEYDKEDRLIHKHTLAGSLTLEESYEYDEKSRLVIYRTGEGTSDDMLPCNECGRPITGQSFDYDGLDNLTRLVTAFPSGESDTAVFHYDVQRLTHITHSLTEGSNAYPAEVSLTYDEDGNLTGVEAGGTVTLAHNELGQLIQYNETAYYYDALGRLQQAGESYRYYLDDTVITEDSEDTSVDHVRHAALPVAERQSGQARWLVADSKMSVIAVTSPKGNNCIAYTPSGEGGNTTSIGFNGELKDPASGGYLLGNGTRLYLPMLGCFTSTDSLSPFSAGGLNPYRYCSGDPVNLADSSGHMGEGSTVAGIFGIVAGILSILFTIATGGASLSITAMVGIGLETAGVVASAANLARGAGSSAQTQLLMEGSEQNSGMSVGEAIGIAVGVLAVLAGAGAGMVKWRKTRAWRSRHTSLNRNSKGLLENTHIGDRSGVEQSVYRLDHSTPEEIRLNGFRASQDFGAIPKAIDGDALIVAETLNGVEQYHKIGGGQGHIYRIRSEGIRGFSLNQNIEHNLNDLKVHLDLDLDESINPYIDRADLMEEAHIELETVNRERHSRVKYMGPLNILNDMPDVLK
>NC_009783.1|WP_012127502.1|1679765_1680887_+|hypothetical-protein
MEVKDRSIKQKTGTEKATFDPNKVELTNLYTRVTGSSIRTDVYANGTMQALLFPTVNYTGESEGDTQEKLVEYVTSNLTLYEINTDGSHAKVEWEVSNVSNGYDHDINYLGRENYGSDCCKSTHGLRVPIYITVPIEAAIKEHLWYATLGDDSTSTTTPTIINVHRFSVGLENVELLYITHEQGEREHSGYQKIAYLHTLKYRNSFTNHIIQKIDSWQGVAIDVREGGNNCRLINTVDDMDFGQAILLPDDMTRRGMELHACRQKSYSGSDIVYQGYTPAYPDAGVTDVTIGGFDEYLAKLGTNNVARAWNNGIPIVALQGSGMYLSGHKYIYINFSDLPSVFIDNFGNRVEFVIKCDTRHEGGYITSIFPVN
>NC_009783.1|WP_012127501.1|1678526_1679447_+|IS5-family-transposase
MPKPRYKTTNWKQYNKALINRGSLTFWIDEETIAEWKQSRQGKRGRPRRFSDLAITTALMVKRVFSMPLRALQGFLDSVFKLANVPLVCPHYTCISRRAKEVEVSFKTKNRGVIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHIAVDTSTHEIVAAELSLSNVTDAEVLPNLLKQTRRKIIEISGDGAYDTRNCHDAIRIKRAFPLIPPREGAAFWEEGHPRNLAVVCQKLYGSNKKWKKRYGYHKRSLSETAMYRVKQLLGGKLSLRNYNAQVGETYAMIKALNKLTGLGMPETQYVV
>NC_009783.1|WP_012127499.1|1676474_1677596_-|ISAs1-like-element-ISVha1-family-transposase
MHIDHFKEHFQTIIDQRQGAKVTYCLFEVLFGSLCAVIAGAKGWFDIREYIRGHHDWFKRNNLFLNGIPADDTIARIISTIEPEQFHECFVNWMSSIHTLTDGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQLKTEQKSNEITAIPELIKMLDIKGALVTIDAMACQTKIAKAIVDQGGDYLLAVKSNQGKLRQAIEKAFSSQRTNVANNLSLEQGHGRIESRQCYVFDSTKLEGNFFRWKGLKSIVMVENFRLEKGKSVDLEYRYYISSKALSAEQAAMAVREHWGIESMHWVLDVTMNEDACQIYKDHGAENLSCLRHMSLNMLREEPTKLSIVGKQKQCMMNTSMLEAVLSAGFSQVAKN
>NC_009783.1|WP_012127511.1|1693421_1694435_+|integrase-domain-containing-protein
MQKKSYIGHLTNTPRDFSKPNFNLGSRDMAKALVNASFENQGGIVTNTHRARLPAIKHFIDFIKSTTSIKRLNEVEKRHVQSFGEFLKDNVQEDVFSSATARDYLSHVNRSLAQARGDEKCVINATRDLCFTPKSGIANEDRSVSEELHAKVLANVTPEVSFVMQLQRLFGLRFREAALLDATKVLEALHQGSVPMLVRGTKGGQPRPLADISDERYQLLLRVAEFQHSLDHDSLVPSHLSLKAFQSYAWRQTKLVDAKYASHGERKYWACKTYFNAMNVPCPVQASIAHGKAHHQYIAQVLNITESEAKQRDQLVRFKISKLLGHHRISITNSYLG
>NC_009783.1|WP_012127512.1|1694437_1694776_+|hypothetical-protein
MNKHTQRQILSVMAPYQKRGIPYRAKQVKRLLMIFDDIFRHEPYVAEQLNRVGRRQIIGYWERSRGDSEQVRQEKYAILKWFFEHTDLKVRVPIPKKRSIKSPKKSDEMRSK
>NC_009783.1|WP_021017798.1|1694931_1696254_-|IS4-family-transposase
MFAQELVLAHETVEDGKNYESVVNAIQLEWIEQALLDTSKASIRRRRLPAQQAVWLVIWMGLQRNKSIKEVCSSLDLALQPEPQNTWSRVAPSVLTDSRRRLDEAPLAALFKTSVAAWESDALVKDKMLGLSIMAVDGTTFRCQDSEDNAKAFGFISQKHKPYPQLRLVGLMATETRFMMGAAFDACQVGEATLARRLLADVPANSLTLFDRCYFSADLLISWNAAASNSHWLTPVKRKLRYEVVEHFAENDILISMPISPQAQRNNPNLPTHWQARLILYKDPKGEIEGFITSLVDPEKYSLEDLLAVYWQRWEIEEGYGEIKQTQLQSEVTLRSRFAVGVRQELWGILLAYNLVRLEMIHIAQDADVSPTRVSFTAAINLIDTQLRWLALSPDGTLPSKLKQMRESISHFILPDKRKDRTYPRSVLFVPTKYPFRYKH
>NC_009783.1|WP_012127514.1|1696387_1697242_-|WYL-domain-containing-protein
MSKWPLRWDLLARYRMIEIVALWEGRLNTGHLMQSFGIGRQQASKDINTYLADVAPDNLIYDKQLKGYKPSDSFIPQLTSGHTDEYLHILARSEDITVTFDELDMGFENVAMVRPVTRNISPQVLRPLVQAIREKKRVDIYYTPLKDGEEVERIISPHTLVCTPIRWHVRAYCEHAGDYRDFVLSRIQGIPDLNDSASFKKHGDPLWNQSVNVELVADQRFSEKQKAVIEKDYAMNDGVLTIPTNASLVRYVLDAYNIDIHTQKSNPRGQQIVLRNADELMKYL
>NC_009783.1|WP_012127515.1|1697444_1698224_+|hypothetical-protein
MKLNHYLRKIEQGKPINLEHFRRCLPFSDDDKWRKIYSFVRAHDGYLLTIDDIEAHNELYLKKPTNRVGASKLGRSHDFQTSFSHLLVLNRINDSQIPFVVVCDVNGVRAGGKLVGKRAVLIENIENFYRYQEFLEALGHSGLVESSDVIFGSGNQICHHLNISFLSSYEDIYCAQDVELGGLTTFKSLKNALPQCKWLAPADWEAFRGSFQLKPKNSNHLAKAIKLARELDLNTEADLMNQTRHFMEQEAFLPVLEQD
>NC_009783.1|WP_012127516.1|1698227_1701167_+|hypothetical-protein
MLKNAIDNLLISISRLIAIDSAGVAIAEIDLREGGILIGGGNIGKTSILNAIRLFLLPEENFKDSKNKFGFSDKEGNFYSNDECFEHYFPSSTSFLILECDNYLGGPIPHCQILYRGSSEKLDYRRMFTSLRYGQIRHLFWDDNAGDDGIGGRVDDLTLSKVQDFLKRDDKHFKSLVRSSAIKEVIYANQLLDIDAMRFCLFPLSSTKDADVDAFRALVRLLFDMKTGSDTVRLAVANIIESRKKERKDELNFDIDAFINHNEMLSRRELVLKKIESLRPEFEKLALSHQQLVSNKDAEDALMQYAMMLGSRINQENQALEQEEVQLTLQKEKVRSAKKACDDTLDKQKTLQGEINALSRRQKKLADAVQKTTLIINQYDESETIESIVSGHREHLADKEQALALKQDAEKRQAELEALKQEVGKLEEMEARYLTSVNAQEFKLFNQLPESVWMKLAAVNLEVAESNPTRPLTLSEQQAIESFTDLLEEKEQHYTLWGLELEPIQLDNRESDQIRLSKVQETLGRKRKRMLDLNAMDSQSRFERVKDISTLEVEIKRTQNEINLLLAYTNDSHQLQETNKELADAEQVRDSLEKQVDAQKDLWEQEKHSYDAQTDKLTKKKQQLEKLTRYSVRVKAELQAHHLPVSDFSVLPDQTVDLSEETLHKRIESLNIKRQAKTDITERLQDFVREQVLENDDKLMLSHLDDELLEHAFHQLQTRYQGLDEEFDILRKHFIEHKHSVHAIINELKNNREMVRQFEQSINRAFEGLVINDLSEVAAKIKVEARFDDLVNEIEFFDTHSDQKASEQFIERLKAFSKKFFPEGKAALLTMEQIVSGISYRVKKQGQEGWESKSQSTSTIMLINIKLVEILLGRLRNSACSTQFPLVIDEGASVDSSQFDWLLPNMKQAGFRVLSASTNSASSEIIFKFGQHFRLDAMRTATPYSKARTIAFTGMPESFVTKGSMLDREQLDMFGEAYE
>NC_009783.1|WP_012127517.1|1701159_1702572_+|hypothetical-protein
MSEQRLLTIPTFAIMLEHHTIMRDVIRTMDESGEPYVREASFISRLHRYIQGQSKEKQKQLRTAFSTDNLLASHILVDKDEFGGGSRLIFDRAVIGVFRLFDRSLFQDLTDVALKIQLGGIRLLLEKLQSSSMLFSDSDLDFKELIDELFHQLSELLNSIRLNLVKMQTINQELSDASELAAKSHNPQVFSALQQESIEKISLLLSRHILPTRQFLDEKSRLKDGPNLFECLQSLRSQFDHHQDHQRANAMLRYEVSFNSFHKQISKVSQSVDQFLARSKKRLQQFNAIEGAFNELLNELDATKQNLKRSQIDGQFARDNGSFMGLMQQARPKVLRISSSEAYLNNVVSDIEARVVDRSLLEQSRYVDLVSVKDDSTEQRLARAEQIFELVKNMKMAEYQDLTLSLHRRLKDYFSDYHFVDLLEGLNFILRSDAMLDGHTLKMTNFRQRLAQGDNIYLYRKIRTERVIQQ
>NC_009783.1|WP_012127518.1|1702568_1703135_+|hypothetical-protein
MSPFSQINMAKSQQIYATFVNGKVITKQVYDLYQQSFLDSPLYTELYNNLDHFTQLYLHIGYTLNFNVEGEFFYISRREAEEDADTNATKIQAMLLIIARYWVDKGFDLDDLMTPVIGLGRTALEEIAEQTIYDDIRQALGIETWDKALNYLADRNFLYQCGDKHYILSSAGMHFLNLHVEKYSQEQD
>NC_009783.1|WP_012127519.1|1703279_1703579_-|T3SS-regulon-translocated-regulator-ExsE2
MSNDIQPTQKHLSIDWIESNNQTESVKKGNFSGRTVVQINPNEREQNRTNSKLELGETLSMLANTERSNAILSFEKDSNAAQSLLSRKVQVIATNRPMS
>NC_009783.1|WP_012127520.1|1703586_1704033_-|CesT-family-type-III-secretion-system-chaperone
MSARQIVDEVLLKFAHQIGLPKLQLIEDELGLAFDDNLRVHVIFHPTTGNLQLEAEIVDLQIVNSDLYRSFIAFNYHWSEHQLFFSLDNHRHKLCLNRLLHAESLDYELFEDALAELLTQSESWEDLLSAHIAMEDLPSQLQSSDLRV

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Crispr_ID: NC_009783_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009783_2

3640883-3641124

Orphan

Consensus_repeat	Method
CCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCCGC	PILER-CR

2 spacers

The CRISPR arrays of NC_009783_2

>merge|NC_009783|2|3640883-3641124|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTCTTCTTTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCACTTGCTTAAAGCAAGACACAAACAGAATAGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGC

>NC_009783|2|2|3640883-3641124|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGT	CACCAGTTCGATTCCGGTAGTCGGCACCATTCTTCTTTTGCCTCGAT
AGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGG	TGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCACTTGCTTAAAGCAAGACACAAACAGAATAGTTCCTCCTT
AGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009783.1\|WP_012128952.1\|3643971_3645408_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NC_009783.1\|WP_012128611.1\|3632442_3633822_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|373239
NC_009783.1\|WP_012128958.1\|3659174_3660458_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200570
NC_009783.1\|WP_005425792.1\|3638805_3639078_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NC_009783.1\|WP_012128949.1\|3636786_3637506_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_009783.1\|WP_012128954.1\|3653630_3654629_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NC_009783.1\|WP_012128956.1\|3655505_3656828_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NC_009783.1\|WP_012128957.1\|3658620_3658926_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NC_009783.1\|WP_012128959.1\|3660527_3661418_-\|hypothetical-protein	unknown	unknown	unknown
NC_009783.1\|WP_009707622.1\|3657198_3658533_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NC_009783.1\|WP_012128951.1\|3639164_3640295_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NC_009783.1\|WP_012128953.1\|3652240_3653491_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NC_009783.1\|WP_012128950.1\|3637709_3638786_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NC_009783.1\|WP_012128948.1\|3635746_3636775_-\|DNA-methylase	unknown	unknown	gnl\|CDD\|223971
NC_009783.1\|WP_005441971.1\|3656838_3657150_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NC_009783.1\|WP_009705540.1\|3630490_3631663_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NC_009783.1\|WP_012128955.1\|3654732_3655488_-\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NC_009783.1\|WP_005425799.1\|3634723_3635644_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NC_009783.1\|WP_005425804.1\|3629332_3629764_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NC_009783.1\|WP_012128945.1\|3629869_3630472_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648

Protein	Function_ID	Function_description	E-value
NC_009783.1\|WP_012128952.1\|3643971_3645408_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NC_009783.1\|WP_012128611.1\|3632442_3633822_-\|IS4-family-transposase	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	8.20393e-15
NC_009783.1\|WP_012128958.1\|3659174_3660458_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200570	cd10946, CE4_Mll8295_like, Putative catalytic NodB homology domain of uncharacterized Mll8295 protein encoded from Rhizobium loti and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase Mll8295 encoded from Rhizobium loti. Although its biological function still remains unknown, Mll8295 shows high sequence homology to the catalytic domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both Mll8295 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	5.99862e-69
NC_009783.1\|WP_005425792.1\|3638805_3639078_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.88866e-59
NC_009783.1\|WP_012128949.1\|3636786_3637506_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.89913e-107
NC_009783.1\|WP_012128954.1\|3653630_3654629_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.74976e-111
NC_009783.1\|WP_012128956.1\|3655505_3656828_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_009783.1\|WP_012128957.1\|3658620_3658926_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.85754e-46
NC_009783.1\|WP_009707622.1\|3657198_3658533_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.12527e-154
NC_009783.1\|WP_012128951.1\|3639164_3640295_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	3.23948e-149
NC_009783.1\|WP_012128953.1\|3652240_3653491_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	4.07337e-71
NC_009783.1\|WP_012128950.1\|3637709_3638786_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NC_009783.1\|WP_012128948.1\|3635746_3636775_-\|DNA-methylase	gnl\|CDD\|223971	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair].	1.78545e-08
NC_009783.1\|WP_005441971.1\|3656838_3657150_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	1.15693e-35
NC_009783.1\|WP_009705540.1\|3630490_3631663_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NC_009783.1\|WP_012128955.1\|3654732_3655488_-\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	6.42341e-131
NC_009783.1\|WP_005425799.1\|3634723_3635644_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NC_009783.1\|WP_005425804.1\|3629332_3629764_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	2.05857e-68
NC_009783.1\|WP_012128945.1\|3629869_3630472_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.75756e-123

>NC_009783.1|WP_012128951.1|3639164_3640295_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKKIAFIATALLMAGCSREFVEEIYDVNYEPTNRFANNLAELPGQFEKDTDALDALISSFSGNIKKRWGQREVKFAGKSNYVKYIDNYLSRAEVDFQKGVITIETVSPTEPQKHLKNAIITTLLTPDDPANVDLFSSKEIKLEGQPFLYNQVVDQDKKPIQWSWRANRFADYLIANQVKTKDVDFKKAYYVEIPMVEDHFSQRSYQYADIVRRASKKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGQPSPEYLFNPENNIDTGTAYFYILKNRYLKDVQHPTSLEYSMISAYNGGTGGVLNTFHRTDRKRAMQDLNSLQPNQVYWALTKKHPNAEARRYLEKVTNFKKEFNAG
>NC_009783.1|WP_005425792.1|3638805_3639078_+|oxidative-damage-protection-protein
MSRTVFCARLKKEGEGLDFQLYPGELGKRIFDNISKEAWAQWQHKQTMLINEKKLNMMDPEHRKQLETEMVNFLFEGKDVHIEGYTPPSE
>NC_009783.1|WP_012128950.1|3637709_3638786_+|A/G-specific-adenine-glycosylase
MTPFASAILEWYDAYGRKDLPWQQNKTAYSVWLSEIMLQQTQVTTVIPYYQRFLERFPTVVDLANAEQDEVLHLWTGLGYYARARNLHKAAKEVAHKYNGEFPLDLEQMNALPGIGRSTAAAVLSSVYKQPHAILDGNVKRTLSRCFAVDGWPGQKKVENQLWEIAETHTPQTDVDKYNQAMMDMGAMMCTRSKPKCTLCPVNELCVAKKQGNVLDYPGKKPKKDKPVKQTRFVMLHHKNGDSHEVWLEQRPQTGIWGGLFCFPQTEHIDVESDIDLLLEQRGIQASDIKHQETLITFRHTFSHYHLDITPILIDLSKQPNVVMEGNKGLWYNLSKPEEVGLAAPVKLLLEALLHELR
>NC_009783.1|WP_012128949.1|3636786_3637506_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVTTNEYNEDGKMIRKIRSFVRREGRLTKGQENAMNECWPTMGIDYKAELLDWKEVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLADAREAGITNLRVMCHDAVEVFEHMIPNGSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLILNEGIFHMATDWENYAEHMIEIMNQAPGFDNIAEEGDFIPRPEERPLTKFEARGHRLGHGVWDIKFKRTA
>NC_009783.1|WP_012128948.1|3635746_3636775_-|DNA-methylase
MYHYAILANPGHNRIYFDSAMTIACSELKAILASEGVEVTEIGNKDVGLPAALVFSCETDLSEAQAGKIAASSIYYALFEVREDGLLRPIQAPAFNTFPESMSQILRYTGKTNEQFTRLMVNLGVSAANTGSAHLTLMDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGGKKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQVVKKNSVDVMVSDLPYGVQHGSKNAKDSKLNRSPLELLKEALPAWKVVLKKQGSVVLSFNEFTLKWKDVAALFEEQGWKVLSEEPYIGYLHRVDQSINRNIIVAIKP
>NC_009783.1|WP_005425799.1|3634723_3635644_-|glutaminase-B
MKPTAQILTDILAEVRPLIGQGKVADYIPALAKVPNTKLGIAVYTNEGEVIKAGDAEESFSIQSISKALSLTLAMCLYKQEEIWCRVGKEPSGQAFNSMIQLEMEQGIPRNPFINAGAIVVADLLQSRLSAPRQRLLEFARQLSGDTHIVYDKVVAASEMMHGDRNAAIAYLMRSFGNFENEVIPVLQNYFHACALKMSCVDLAKTFSYLANKGTSVQTGKPVVSPTQTKQLNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPELDASGNSLAGTKALELLAERIGRSIF
>NC_009783.1|WP_012128611.1|3632442_3633822_-|IS4-family-transposase
MTHSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFIRNENINAEDIAEAGFQSTVSRANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRALHVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATRPYKEKESYKWEQASRRVVERLGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLDH
>NC_009783.1|WP_009705540.1|3630490_3631663_+|radical-SAM-family-heme-chaperone-HemW
MLTPPALSLYVHIPWCVQKCPYCDFNSHALKAEIPEEEYINALLEDLDTDIEKYRLNEAPRPLHSIFIGGGTPSLISAEGIERLLKGIEARIPFKPEIEITMEANPGTIEAERFVGYRKAGVTRISIGVQSFEQQKLERLGRIHGQDEAVNAAKLAHQIGLNSFNLDLMHGLPDQSIEQALADLDKAIELAPPHLSWYQLTIEPNTMFYYKPPTLPDDDDLWDIFEQGHEKLAAAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGSHGKLSFADGRIVRTTKVKHPRGYLMAYQNMVKPYLDSEQLVADEDRPFEFFMNRFRLMEACPKQDYIDTTGLPLSSIQETIDWALEMGYLSETETHWQITEKGKLFLNDLLEAFMAEEE
>NC_009783.1|WP_012128945.1|3629869_3630472_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFEVLAQSEFNVSEVAETGTTFIENAIIKARHAAQETGLPAIADDSGLEVDFLKGAPGIYSARYAGEKASDQENLEKLLKAMEGVPEAKRTARFHCVLVLMRHENDPTPIVCHGKWEGRILTEAHGENGFGYDPIFFVPEDNCASAELEPARKKQLSHRGKALKSLFAQLSEQVSQ
>NC_009783.1|WP_005425804.1|3629332_3629764_+|DUF4426-domain-containing-protein
MSKWITALLISLLSLPSMAGQFKTMKDIEVHYIAFNSTFLTPKIARSYDIKRNGYNAVLNISVLDSASLGKPAVEAKISGQAKNLIGQTQKLTFREVKEGDAIYYLAELGITNEETFTFDIDVKAGNKGSGKLKFTQKFYVEE
>NC_009783.1|WP_012128952.1|3643971_3645408_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MMQQIQSETLRVLFENLSSQDGIAVINPTTEQELIRLKPSSLDELDVQIEACKSAQLEWAKLSAKARSASLKKWFQLLVEHTEDIANIITLEQGKPLTESRGEVAYGASFVEWFAEEAKRAYGEVIPAPTIDRRLSTIKQPVGVCAAITPWNFPIAMITRKAAPALAAGCGMIIKPSELTPLTTLAVVELAHQAGIPKALLSTVVSEQAAEFGLVLSTDPRIKKISFTGSTRVGKILMKQASDTVKAASMELGGNAPFIVFEDADLEAAANGLIASKFRNAGQTCVCTNRLYVHKSVKEAFLAKLLEKAAGLTVGNGLEENTTLGPVITMASKHRLEAVIDQAVQEGATMLNQPQKRSGRFMEPVILDNVEQNMAIVQQELFGPVLPVISFDDDEQVLSMANDTEYGLACYFYTDSLKRIIKFSEGLEYGMVGVNEGIISTEVAPFGGIKESGIGREGAKQGMDEYLETKYICLGGLS
>NC_009783.1|WP_012128953.1|3652240_3653491_-|HD-GYP-domain-containing-protein
MAAIKLTVDRIQPGLHIRLPLKWNDHPFLLNSFKIKDQEQVEMIRHLGVKFVYFNPEQSDASLLPANQPQVEVKKDDALDLEAQKLWQEKQKRIEKLSAYRRRVIQCEKEFERSLARMRSVMTKIRNRPADAVGEAKQLIDDIVEKLMCDDNVTLHLMNGKNEFEDIYFHSLNVAVIAMMVGRAKGYSAEQLKALSFAALFHDMGKIKIPTAILRKQTSLSEPESNYLKLHTKYGLDMANQIEDFPDSAKTVIAQHHELRDGSGYPEGLKGDEIDELAQVIIVANAFDNLCHTPIASEQKIPYTALSHLYKNCKHLYKEENLNILIKFMGVFPPGTVVQLSNNMVGLVISVNASHLLFPNVLVYDPAVPRTQAPIIDLASKDIKIVNAIHASKLPEKIKEYLNPRSRISYFFDSDK
>NC_009783.1|WP_012128954.1|3653630_3654629_-|LacI-family-DNA-binding-transcriptional-regulator
MARIKDVAELAGVNRSTVSRIINGEGKFREETKKKVEAAMAELNYRPSAIARSLATSSSNMVGLLVTYYTGGFFGEMMEQVQTELDMHKKFLITAQGHHSAEGEKEAIQRFNDLRCDGYVLHSRYLSDDDLRELAKLPTPFVLLDRYVEGIEERCVTFNHHHASRIAVEHLIAGGHKHIACISGPSQRHNSLLRKLGYVDAMKTAGINIDESWCEEGNYGRQSGYDAMAAIYLRHPEVTAVFSCSEEMTVGAMQFLHEKRIPVPEQISLVSFDSVDLCESLYPTVSAVHFPISEMARVAVQTLMGLIKDQQSHTKPVFEAELKLRKADRTLL
>NC_009783.1|WP_012128955.1|3654732_3655488_-|chitin-disaccharide-deacetylase
MKVIFNADDFGLTQGVNNGIIKAHQQGVVLSTTMMMGMDAEQHAVELANQNPNLKIGVHLRFTAGNPLTGHPNLTGGGEQFVRFNELWKKRDFQEEAVYQEAVAQVERFLSLGLPLSHIDSHHHAHTHPQLLPVIRRVAEQYRVPLRGSGLCHIDCDTTYHFTDEFYDQGVSLDGVMAHLKSLKSQYDVVEVMCHPADVDQHLLSISGYALLRELELQVLTSPILKQELAEHGMSITDYSTLISTRKFASV
>NC_009783.1|WP_012128956.1|3655505_3656828_-|6-phospho-beta-glucosidase
MPRDAIKLAIIGGGSSYTPELVEGVIKRLEFLPVKQMHFVDIEAGAEKLEIIKGLAQRMVDKAGADIEIKAGFDRREAINGADFVMTQFRVGGLAARANDERIPIKYDVIGQETTGPGGFAKALRTIPVILDICKDIEELAPNAWMLNFTNPAGLVSEAVSKYSKVKSIGLCNVPVSMEMMIAEMMECEPKELQLEFAGLNHLVWVLKAWLKGEDITQTVLEKVGDGANFSMKNIWEEPWDPAFLKALGAIPCPYHRYFYQTDAMLAEEKQSAGEQGTRAEQVMETESALFKLYQDPNLDHKPKELEERGGAYYSDASLNLVDSIYNNRNSIHVVNVLNNGAINGLADDAVIECSAVIGSWGAKPLTVGNLSTNISGLLHQVKAYEQLAIEAAVEGSYDKALMALTNNPLVPDIGRVKSILDEILEVNAPHLPQFKLTTL
>NC_009783.1|WP_005441971.1|3656838_3657150_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEQELVVMEIICNAGEARSLSYEALRLSREKDFVAAEEKLSQARECINKAHLIQTQLIEEDQGEGKVPMTLVMVHAQDHLMTTILAQEMAVEIVALNKQLAEK
>NC_009783.1|WP_009707622.1|3657198_3658533_-|PTS-sugar-transporter-subunit-IIC
MKLYDAIIGIVEKHIAPIAAKVGNQPHVRAMRDGFIVAMPFIIVGSFILIFAFPPFAEGTTFTLGQIWLDFATTHFDTIMMPFNMSMGIMTIFVSLGVAYSLAKAYKMDGITSAVLSLMSFLLVAAPAKDGALAMNHMGGTGIFTAVMCAFFSVELYRFMKKHNITIRMPEQVPPAIARSFEVLLPVLAIFITLYPLSIFVQTQYDMLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFLTNISANIDAFVAGQPIPNVFTQPFWDFYIFIGGSGATLALVLLMSFSRSAHLKSIGRMSAVPGFFQINEPVIFGSPVVMNPILFIPFVFAPILNATIAYFAVHLGFVGMGVATTPWTTPAIIGASWGSGWTFSPVLLVIGLLILDLFIYLPFFKMFEKQVLEQELPTNKESKEAEQPSGEGVTA
>NC_009783.1|WP_012128957.1|3658620_3658926_-|PTS-sugar-transporter-subunit-IIB
MKKILLCCSAGMSTSMLVKKMEQAAEKQGIECKIDALSVNAFDEAIKEYDVCLLGPQVRFQLEELRKTANEHGKNIEAISPQAYGMMKGEEVLQQALELIN
>NC_009783.1|WP_012128958.1|3659174_3660458_+|polysaccharide-deacetylase-family-protein
MKLNKLAMVTLLGTALSQFSFAQTAPKGTIYLTFDDGPINASIDVINVLNEQGVKGTFYFNAWHLDGIGDENEDRALEALKLALDTGHVVANHSYAHMVHNCVDEFGPTSGAECNATGDHQINAYQDPVYDASTFADNLVVFERYLPNINSYPNYFGEELARLPYTNGWRITKDFKADGLCATSDDLKPWEPGYVCDLDNPSNSVKASIEVQNILANKGYQTHGWDVDWSPENWGIPMPANSLTEAEAFLGYVDAALNSCAPTTINPINSKAHGFPCGTPLHADKVVVLTHEFLYEDGKRGMGATQNLPKLAKFLRIAKEAGYVFDTIDNYTPVWQVGNAYAAGDYVTHSGTVYKAVTAHIAQQDWAPSSTSSLWTNADPATNWTLNVSYEAGDVVTYQGLRYLVNVPHVSQADWTPNTQNTLFTAL
>NC_009783.1|WP_012128959.1|3660527_3661418_-|hypothetical-protein
MNKNIILSASLVSSLVVSPAVFSNDGNSSNQKYESTMVPQVGSALVVDWVIGQVVDAASSAIKGGVKSALKNAIFGSGKTNYVTLSQESLAEIENIVNAGFDNHVHSAMIQNLRSLEASMNAYSDGLQVGYRDQVLAPLLLTQSNDLINEPAFEKSRPYYGSLTIQYSLSASLSYSIYADRVHYNEMPVVALENHGNALADQLEARGMAAKSNINQKVYITSKSSSNCGILRAARCTDYQLHDDVGGRTYNYPYSMFGNQSYLLASNQLKSLRDSYYSTVLGEDYEGIVTKLRTKY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103819-103865	7	0.851
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13637-13683	7	0.851
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	MH494197	Escherichia phage CMSTMSU, complete genome	196764-196810	7	0.851
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	LN997803	Escherichia coli phage phi467	15118-15164	8	0.83
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296497-296543	9	0.809
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	KU052038	Escherichia phage SerU-LTIIb, partial genome	1162-1208	9	0.809
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	KU052038	Escherichia phage SerU-LTIIb, partial genome	3068-3114	9	0.809
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1925-1971	9	0.809
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35420-35466	9	0.809
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85809-85855	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52070-52116	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52076-52122	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52081-52127	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52080-52126	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	KY653118	Morganella phage IME1369_01, complete genome	690-736	10	0.787
NC_009783_2	2.1\|3640925\|47\|NC_009783\|PILER-CR	3640925-3640971	47	NC_049942	Escherichia phage JLK-2012, complete sequence	23522-23568	13	0.723

1. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.851

agtaggtcaccagttcgattccggtagtcggcaccat----tcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatcaagtccggt----	Protospacer
*************************************    **.  *

2. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.851

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagccgttt	Protospacer
********************************** * **  *. **

3. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.851

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagccgttt	Protospacer
********************************** * **  *. **

4. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 8, identity: 0.83

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg-------	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacca-------tatgcgggcat	Protospacer
************************************       * **

5. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 9, identity: 0.809

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgggtat	Protospacer
************************************* . .   *

6. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 9, identity: 0.809

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgggtat	Protospacer
************************************* . .   *

7. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 9, identity: 0.809

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgggtat	Protospacer
************************************* . .   *

8. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.809

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccagaatgcggcca	Protospacer
************************************   * *  ...

9. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.809

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatcaagtcaca	Protospacer
***************************.******** **   *. ..

10. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccaaatgcggtcat	Protospacer
************************************  . .  *.

11. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgaccct	Protospacer
************************************.*. .  ...

12. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgaccct	Protospacer
************************************.*. .  ...

13. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgaccct	Protospacer
************************************.*. .  ...

14. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacgaccct	Protospacer
************************************.*. .  ...

15. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 10, identity: 0.787

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
agtaggtcaccagttcgactccggtagccggcaccatattaaacccg	Protospacer
******************.********.********* .*   ...*

16. spacer 2.1|3640925|47|NC_009783|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 13, identity: 0.723

agtaggtcaccagttcgattccggtagtcggcaccattcttcttttg	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatatgcgggtac	Protospacer
* .*****.******************.********* . .   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151182 : 190714

Vibrio_phage(40.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012126507.1\|151182_151662_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_005428762.1\|151728_152247_-	membrane protein FxsA	NA	NA	NA	NA
WP_005428778.1\|152671_154123_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_005428800.1\|154299_155607_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_021017962.1\|155768_157604_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_005428786.1\|157799_158435_+	response regulator transcription factor	NA	NA	NA	NA
WP_005428797.1\|158564_159191_+	MarC family protein	NA	NA	NA	NA
WP_005530890.1\|159391_159655_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_012126511.1\|159667_161395_+	cation acetate symporter	NA	NA	NA	NA
WP_012126512.1\|161489_161975_+	hypothetical protein	NA	NA	NA	NA
WP_005530885.1\|162189_162570_+	hypothetical protein	NA	NA	NA	NA
WP_012126513.1\|162586_163972_+	class II fumarate hydratase	NA	NA	NA	NA
WP_021017961.1\|164028_167460_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_021017960.1\|167593_168793_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_012126517.1\|169033_170860_+	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_005428802.1\|170895_171528_+	3'-5' exonuclease	NA	NA	NA	NA
WP_021017959.1\|171746_173699_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.4e-85	37.5
WP_005428757.1\|174006_174456_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_048813996.1\|174516_174993_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_005440401.1\|175007_176351_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_012126521.1\|176481_177369_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_041853441.1\|177508_178477_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462885.1\|178500_178797_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_021017957.1\|179024_180014_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.4e-22	39.3
WP_012126524.1\|180151_180640_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_048813997.1\|181096_182641_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.8e-26	40.1
WP_011998779.1\|182701_183055_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|183051_183363_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012126527.1\|183480_185013_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.6e-110	42.1
WP_012126528.1\|185023_185764_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.7e-48	43.2
WP_012126529.1\|185847_186174_+\|transposase	transposase	NA	NA	NA	NA
WP_012126524.1\|186446_186935_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_157722657.1\|186900_187194_+\|transposase	transposase	M4M9P8	Vibrio_phage	1.3e-14	77.1
WP_162471675.1\|187244_188279_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_162471675.1\|188371_189406_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_162471675.1\|189679_190714_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2

DBSCAN-SWA_2

241273 : 309936

Enterobacteria_phage(18.18%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012126556.1\|241273_242467_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	3.7e-68	38.1
WP_038890960.1\|249208_249664_+	RNA-binding protein	NA	NA	NA	NA
WP_012126558.1\|249626_250433_-	glutamate racemase	NA	NA	NA	NA
WP_012126561.1\|250942_251128_-	hypothetical protein	NA	NA	NA	NA
WP_012126562.1\|251636_253490_-	TonB-dependent receptor	NA	NA	NA	NA
WP_005451984.1\|253933_255043_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_005430908.1\|255107_255473_-	YijD family membrane protein	NA	NA	NA	NA
WP_005430912.1\|255472_256114_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_012126563.1\|256375_257806_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_021017946.1\|257874_259218_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_009695929.1\|259273_260068_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005438488.1\|260302_260923_-	repressor LexA	A5LH73	Enterobacteria_phage	1.4e-10	43.3
WP_021017945.1\|261291_263718_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_012126569.1\|265695_266550_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_005430917.1\|266550_267090_-	chorismate lyase	NA	NA	NA	NA
WP_005430919.1\|267243_267654_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_012126570.1\|267754_268597_-\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_010650540.1\|268596_268917_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_005535656.1\|269330_270188_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	6.6e-43	38.0
WP_005430346.1\|270363_271332_-	cell division protein FtsX	NA	NA	NA	NA
WP_005535654.1\|271321_271996_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	6.8e-27	35.9
WP_012126572.1\|272018_273245_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_012126573.1\|273468_274068_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_012126574.1\|274093_274360_+	DUF1145 domain-containing protein	NA	NA	NA	NA
WP_005430358.1\|274423_275008_-	YhgN family NAAT transporter	NA	NA	NA	NA
WP_010650549.1\|275120_275342_-	DUF2492 family protein	NA	NA	NA	NA
WP_012126576.1\|275411_276032_-	lysoplasmalogenase	NA	NA	NA	NA
WP_005430355.1\|277052_277418_-	hypothetical protein	NA	NA	NA	NA
WP_012126577.1\|277610_278372_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-15	44.0
WP_005430363.1\|278544_278874_+	DUF2500 domain-containing protein	NA	NA	NA	NA
WP_012126579.1\|278875_279889_-	acyltransferase	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	3.7e-08	23.9
WP_021017943.1\|280139_280520_+	cystatin domain protein	NA	NA	NA	NA
WP_012126581.1\|280597_281977_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.3e-48	27.2
WP_012126582.1\|282124_283342_-	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA
WP_005430331.1\|283600_284095_-	cyclin-dependent kinase inhibitor 3 family protein	NA	NA	NA	NA
WP_012126583.1\|284106_285108_-	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_012126584.1\|285151_285487_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	8.1e-21	55.1
WP_012126585.1\|285589_286813_-	EAL domain-containing protein	NA	NA	NA	NA
WP_005430372.1\|286841_287456_-	homoserine/homoserine lactone efflux protein	NA	NA	NA	NA
WP_012126586.1\|287521_288511_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012126587.1\|288682_289495_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005452022.1\|289564_290035_-	EVE domain-containing protein	NA	NA	NA	NA
WP_012126588.1\|290076_291627_+	membrane protein	NA	NA	NA	NA
WP_021017942.1\|291626_292223_+	DTW domain-containing protein	NA	NA	NA	NA
WP_012126590.1\|292333_294820_-	EAL domain-containing protein	NA	NA	NA	NA
WP_012126591.1\|294958_295675_-	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA	NA	NA	NA
WP_012126592.1\|295687_296629_-	tyrosine recombinase XerC	A0A1P8DJJ6	Virus_Rctr41k	9.5e-19	32.4
WP_033001370.1\|296594_297299_-	DUF484 family protein	NA	NA	NA	NA
WP_012126593.1\|297319_298150_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_012126594.1\|298160_299414_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_012126595.1\|299666_299981_+	iron donor protein CyaY	NA	NA	NA	NA
WP_012126596.1\|300056_302585_-	class I adenylate cyclase	NA	NA	NA	NA
WP_005430387.1\|302933_303872_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_012126597.1\|303874_304603_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_012126598.1\|304620_305802_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_012126599.1\|305801_306983_+	hypothetical protein	NA	NA	NA	NA
WP_162471675.1\|307542_308577_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_162471675.1\|308901_309936_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2

DBSCAN-SWA_3

455269 : 522125

Indivirus(25.0%)

bacteriocin,transposase,integrase

attL 481754:481813|attR 538320:538412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012126680.1\|455269_455533_-\|transposase	transposase	NA	NA	NA	NA
WP_162471675.1\|455585_456621_-\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_041853429.1\|456841_457732_-	HTH-type transcriptional activator IlvY	NA	NA	NA	NA
WP_021017933.1\|457874_459359_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_005427244.1\|459766_460018_-	accessory factor UbiK family protein	NA	NA	NA	NA
WP_012126683.1\|460149_463272_-	multidrug efflux RND transporter permease subunit VmeD	NA	NA	NA	NA
WP_012126684.1\|463283_464390_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010650400.1\|464408_464993_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012126685.1\|465163_467179_+	DNA helicase Rep	A7KV33	Bacillus_phage	3.3e-117	39.1
WP_041853263.1\|467251_467665_-	cytochrome c5 family protein	NA	NA	NA	NA
WP_041853262.1\|468824_469550_-	HAD family hydrolase	NA	NA	NA	NA
WP_012126689.1\|470235_471951_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-20	33.5
WP_041853261.1\|472056_473610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012126691.1\|473756_474734_+	ABC transporter permease	NA	NA	NA	NA
WP_012126692.1\|474736_475693_+	ABC transporter permease	NA	NA	NA	NA
WP_012126693.1\|475856_476846_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_012126694.1\|478569_480891_-	hypothetical protein	NA	NA	NA	NA
WP_095211504.1\|480992_481753_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.8e-15	44.0
481754:481813	attL	NA	NA	NA	NA
WP_012126698.1\|482019_483564_-	hypothetical protein	NA	NA	NA	NA
WP_012126699.1\|483568_484141_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_021017931.1\|484143_485619_-	hypothetical protein	NA	NA	NA	NA
WP_012126701.1\|485650_487003_-	serine/threonine protein kinase	A0A1V0SDC3	Indivirus	1.2e-11	29.8
WP_012126702.1\|487234_488242_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005430035.1\|488296_489223_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012126703.1\|489426_489804_+	hypothetical protein	NA	NA	NA	NA
WP_005429986.1\|489806_490136_+	multidrug transporter	NA	NA	NA	NA
WP_012126704.1\|490620_491646_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012126705.1\|492027_493824_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_012126706.1\|493820_494342_-	gluconokinase	NA	NA	NA	NA
WP_012126707.1\|494494_495871_+	GntP family permease	NA	NA	NA	NA
WP_012126708.1\|495880_496492_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_012126710.1\|497734_497935_+	hypothetical protein	NA	NA	NA	NA
WP_012126715.1\|499542_499752_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	4.5e-14	55.0
WP_021017930.1\|500141_501500_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_041853428.1\|501769_502468_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_021017929.1\|502619_503459_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_041853259.1\|503883_505926_+	oligopeptidase A	A0A1V0SD92	Indivirus	3.4e-45	22.8
WP_005430014.1\|506011_506476_-	transcriptional regulator AsnC	NA	NA	NA	NA
WP_012126720.1\|506591_509741_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012126721.1\|509805_510585_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012126722.1\|510791_511391_+	hypothetical protein	NA	NA	NA	NA
WP_012126723.1\|511454_512333_-	DMT family transporter	NA	NA	NA	NA
WP_005430021.1\|512403_512829_-	universal stress protein UspA	NA	NA	NA	NA
WP_005533534.1\|513250_513778_+	non-heme ferritin	NA	NA	NA	NA
WP_012126725.1\|513868_514192_+	universal stress protein UspB	NA	NA	NA	NA
WP_012126726.1\|514346_515540_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_021017928.1\|515677_516997_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_021017927.1\|516989_518735_+	hypothetical protein	NA	NA	NA	NA
WP_012126731.1\|521575_521836_+	DNA-directed DNA polymerase	A0A1W6JNT0	Morganella_phage	1.1e-09	68.4
WP_012126732.1\|521867_522125_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
538320:538412	attR	NA	NA	NA	NA

DBSCAN-SWA_4

833283 : 841715

Leptospira_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021017903.1\|833283_834828_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.3e-72	34.4
WP_012126950.1\|834888_835242_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.6e-14	43.5
WP_021017902.1\|835238_835550_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_005528793.1\|835909_837772_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-34	32.9
WP_012126952.1\|837871_839632_-	DNA primase	A0A1S5RFN0	Helicobacter_phage	4.5e-46	32.0
WP_012126953.1\|839780_840224_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.3e-23	45.0
WP_001145625.1\|840252_840468_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_041853246.1\|840698_841715_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	58.0

DBSCAN-SWA_5

1044692 : 1112869

uncultured_Mediterranean_phage(17.65%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162471672.1\|1044692_1045727_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_012127076.1\|1045724_1046495_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_012127077.1\|1046561_1047305_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005424820.1\|1047580_1048189_-	peroxiredoxin C	NA	NA	NA	NA
WP_012127078.1\|1048389_1049295_+	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_041853237.1\|1049901_1051530_+	malate synthase A	NA	NA	NA	NA
WP_005424793.1\|1051678_1052992_+	isocitrate lyase	NA	NA	NA	NA
WP_012127080.1\|1053093_1053558_-	CBS domain-containing protein	NA	NA	NA	NA
WP_080514149.1\|1053768_1053990_-	hypothetical protein	NA	NA	NA	NA
WP_012127082.1\|1054363_1055416_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_005424899.1\|1055612_1056749_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-93	47.9
WP_005424903.1\|1056926_1057256_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.1e-11	40.9
WP_005447728.1\|1057277_1059134_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_012127083.1\|1059148_1060096_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-56	49.2
WP_041853413.1\|1060446_1060761_+	hypothetical protein	NA	NA	NA	NA
WP_005424885.1\|1060832_1061636_-	inositol-1-monophosphatase	NA	NA	NA	NA
WP_005424881.1\|1061867_1062587_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_012127086.1\|1062712_1063219_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_012127087.1\|1063247_1064462_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	4.8e-31	29.9
WP_005424883.1\|1064499_1064883_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_005424893.1\|1064956_1065280_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
WP_005424897.1\|1065335_1065851_+	co-chaperone HscB	NA	NA	NA	NA
WP_012127088.1\|1065872_1067726_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.7e-110	40.3
WP_005424889.1\|1067739_1068078_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005424887.1\|1068122_1068317_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011999187.1\|1068393_1069719_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127089.1\|1069929_1071228_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
WP_005532589.1\|1071328_1071754_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.1e-21	40.6
WP_005532587.1\|1071964_1073092_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_012127090.1\|1073509_1074475_+	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_005424674.1\|1074480_1075599_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_010648375.1\|1075654_1076923_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_005424701.1\|1077048_1077663_+	YfgM family protein	NA	NA	NA	NA
WP_005424650.1\|1077675_1078836_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_012127091.1\|1079017_1080514_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_012127092.1\|1080599_1081478_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_010446190.1\|1082846_1083071_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012127095.1\|1083063_1084395_-	exodeoxyribonuclease VII large subunit	A0A1V0SC03	Catovirus	4.6e-35	35.4
WP_012127096.1\|1084627_1086091_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.4e-93	38.7
WP_005424749.1\|1086217_1087771_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_012127098.1\|1088875_1090198_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127100.1\|1091094_1092795_+	carbohydrate-binding protein	NA	NA	NA	NA
WP_005424684.1\|1092977_1093571_+	hypothetical protein	NA	NA	NA	NA
WP_041853408.1\|1094173_1095484_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012127102.1\|1095589_1097137_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_012127103.1\|1098808_1099729_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_033000220.1\|1099789_1100242_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.0e-22	61.9
WP_012127105.1\|1101165_1102194_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011998872.1\|1102365_1102563_+	hypothetical protein	NA	NA	NA	NA
WP_021017686.1\|1102478_1103951_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.3e-131	49.1
WP_086028355.1\|1105059_1106183_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	7.4e-26	33.0
WP_012127110.1\|1108073_1108919_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_012127114.1\|1110337_1110541_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011999494.1\|1110606_1110918_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1110914_1111268_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012127115.1\|1111327_1112869_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.7e-26	40.1

DBSCAN-SWA_6

1131920 : 1175408

Enterobacteria_phage(20.0%)

tRNA,transposase,integrase

attL 1131827:1131886|attR 1175443:1176872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1131827:1131886	attL	NA	NA	NA	NA
WP_011999187.1\|1131920_1133246_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127131.1\|1137353_1137608_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012127132.1\|1138177_1138423_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012127133.1\|1138560_1139793_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.3e-71	36.9
WP_005424760.1\|1140412_1140898_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.9e-24	42.4
WP_005533750.1\|1141016_1141460_+	ubiquinone-binding protein	NA	NA	NA	NA
WP_005533748.1\|1141449_1141806_+	RnfH family protein	NA	NA	NA	NA
WP_012126481.1\|1141860_1143240_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.3e-48	27.2
WP_005424693.1\|1143387_1143747_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_005533738.1\|1143994_1144477_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005424702.1\|1144498_1146163_-	DNA repair protein RecN	NA	NA	NA	NA
WP_012127134.1\|1146593_1147478_-	NAD(+) kinase	NA	NA	NA	NA
WP_021017883.1\|1147623_1148220_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010648318.1\|1148639_1149914_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_012127136.1\|1150239_1152156_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.6e-145	49.9
WP_012127137.1\|1152357_1153503_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	3.0e-22	34.8
WP_041853235.1\|1153598_1154033_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_041853234.1\|1154136_1154652_+	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_021017882.1\|1154661_1155288_+	hypothetical protein	NA	NA	NA	NA
WP_012127141.1\|1155287_1156529_+	hypothetical protein	NA	NA	NA	NA
WP_012127142.1\|1156518_1156929_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_010648303.1\|1157193_1158753_+	AbgT family transporter	NA	NA	NA	NA
WP_021017880.1\|1159131_1159665_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_011999494.1\|1159975_1160287_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1160283_1160637_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012127146.1\|1161353_1162547_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_005533708.1\|1163892_1165497_-	membrane-bound lytic murein transglycosylase MltF	A0A0E3M2X9	Enterobacter_phage	1.1e-06	30.7
WP_012127148.1\|1165820_1169717_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.5e-126	57.9
WP_005424867.1\|1170221_1170530_+	DUF3622 domain-containing protein	NA	NA	NA	NA
WP_041853233.1\|1170655_1171417_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.2e-14	44.0
WP_012127151.1\|1171485_1171911_-	hypothetical protein	NA	NA	NA	NA
WP_005424857.1\|1172080_1173151_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_012127152.1\|1173481_1174021_+	DUF3332 domain-containing protein	NA	NA	NA	NA
WP_011999187.1\|1174082_1175408_-\|transposase	IS4 family transposase	NA	NA	NA	NA
1175443:1176872	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1182162 : 1188853

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005424865.1\|1182162_1183302_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.4
WP_041853231.1\|1183319_1184570_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-99	48.2
WP_005424846.1\|1184697_1185147_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012127159.1\|1185154_1186279_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.7e-43	35.1
WP_005424876.1\|1186290_1186944_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.3e-34	38.0
WP_012127160.1\|1187103_1188213_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-64	39.8
WP_005440184.1\|1188382_1188853_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_8

1434558 : 1486405

Leptospira_phage(44.44%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005430932.1\|1434558_1435839_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	57.6
WP_012127309.1\|1435968_1438320_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.8e-221	52.8
WP_012127310.1\|1438511_1438784_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.5e-20	56.8
WP_012127311.1\|1438998_1440858_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_012127312.1\|1441003_1441291_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_021017861.1\|1441437_1441989_-	rhombosortase	NA	NA	NA	NA
WP_021017860.1\|1441992_1442610_+	DTW domain-containing protein	NA	NA	NA	NA
WP_021017859.1\|1442629_1443952_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_041853219.1\|1443967_1444552_-	5'-deoxynucleotidase	NA	NA	NA	NA
WP_012127317.1\|1444636_1445851_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_012127318.1\|1446067_1447375_+	isochorismate synthase	NA	NA	NA	NA
WP_012127319.1\|1447371_1449090_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_012127320.1\|1449076_1449871_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_041853218.1\|1449897_1450764_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_012127322.1\|1450894_1451884_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_012127323.1\|1451868_1453320_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.6e-27	31.1
WP_012127324.1\|1453290_1453473_-	phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific	NA	NA	NA	NA
WP_012127325.1\|1453646_1453847_+	hypothetical protein	NA	NA	NA	NA
WP_021017858.1\|1453832_1454738_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_012127327.1\|1454900_1456775_-	MFS transporter	NA	NA	NA	NA
WP_012127328.1\|1456788_1457379_-	WHG domain-containing protein	NA	NA	NA	NA
WP_012127329.1\|1457635_1458508_+	TIM44-like domain-containing protein	NA	NA	NA	NA
WP_041853217.1\|1459837_1460935_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012127331.1\|1460934_1464048_+	multidrug efflux RND transporter permease subunit VmeF	NA	NA	NA	NA
WP_012127332.1\|1464138_1464714_-	porin family protein	NA	NA	NA	NA
WP_012127333.1\|1464918_1465236_+	DUF1244 domain-containing protein	NA	NA	NA	NA
WP_012127334.1\|1465314_1466409_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_005431675.1\|1466554_1467022_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_012127335.1\|1467077_1467938_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_012127336.1\|1468105_1468540_+	YbaY family lipoprotein	NA	NA	NA	NA
WP_005529865.1\|1468578_1468881_-	DNA base-flipping protein	NA	NA	NA	NA
WP_012127337.1\|1469152_1469896_+	hypothetical protein	NA	NA	NA	NA
WP_012127338.1\|1470330_1472328_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_012127339.1\|1472710_1473337_+	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA
WP_012127340.1\|1473338_1474067_+	hypothetical protein	NA	NA	NA	NA
WP_011999494.1\|1474316_1474628_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1474624_1474978_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_048814088.1\|1475038_1476583_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_012127343.1\|1476595_1476730_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_011999494.1\|1477664_1477976_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1477972_1478326_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_048814089.1\|1478386_1479931_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.2e-71	34.4
WP_012127346.1\|1480083_1480497_-	hypothetical protein	NA	NA	NA	NA
WP_144080939.1\|1480510_1481215_-	hypothetical protein	NA	NA	NA	NA
WP_080514111.1\|1481534_1481639_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_011998813.1\|1481659_1482859_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-101	47.8
WP_012127348.1\|1483008_1483458_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011999327.1\|1485388_1486405_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1591448 : 1657788

Leptospira_phage(25.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999187.1\|1591448_1592774_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127436.1\|1592949_1593756_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_012127437.1\|1593870_1594662_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_005426221.1\|1594664_1596002_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_005532796.1\|1595982_1596708_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_041853394.1\|1596710_1601174_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_012127439.1\|1601659_1602628_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_012127440.1\|1602631_1604137_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_005426107.1\|1604148_1604895_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_005426262.1\|1605116_1606088_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_005426299.1\|1606269_1607007_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_012127441.1\|1607111_1607978_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_012127442.1\|1608250_1610029_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.4e-10	27.7
WP_005426231.1\|1610128_1610650_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	1.0e-09	33.3
WP_012127443.1\|1610772_1612224_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.6e-12	38.7
WP_041853208.1\|1612302_1612917_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_005426235.1\|1612938_1613943_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.5e-09	25.0
WP_012127445.1\|1614404_1615991_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_005426257.1\|1616008_1617145_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000270284.1\|1617157_1617265_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_012127446.1\|1617257_1617560_+	cyd operon protein YbgE	NA	NA	NA	NA
WP_005426200.1\|1617731_1618151_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_005426224.1\|1618140_1618839_+	protein TolQ	NA	NA	NA	NA
WP_012127448.1\|1618842_1619286_+	ExbD/TolR family protein	NA	NA	NA	NA
WP_012127449.1\|1619299_1620328_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_080514114.1\|1620338_1621691_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_012127451.1\|1621722_1622244_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_021017845.1\|1622259_1623015_+	tol-pal system protein YbgF	NA	NA	NA	NA
WP_012127454.1\|1623311_1624373_+	quinolinate synthase NadA	NA	NA	NA	NA
WP_012127455.1\|1624500_1625544_+	potassium channel family protein	NA	NA	NA	NA
WP_005426232.1\|1625543_1625960_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_021017844.1\|1625968_1626538_+	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_012127457.1\|1626543_1627710_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	1.8e-83	43.9
WP_041853393.1\|1627777_1628347_-	YecA family protein	NA	NA	NA	NA
WP_012127459.1\|1628442_1630863_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.4e-53	34.2
WP_010646956.1\|1631303_1631753_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_012127460.1\|1632297_1632684_+	DUF4102 domain-containing protein	A5VW56	Enterobacteria_phage	1.4e-05	47.8
WP_011999494.1\|1632749_1633061_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1633057_1633411_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021017843.1\|1633471_1635016_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.8e-26	40.1
WP_021017842.1\|1637535_1637712_+	hypothetical protein	NA	NA	NA	NA
WP_012127466.1\|1637797_1638985_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_012127467.1\|1639041_1639944_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_021017841.1\|1639956_1641027_+	butyrate kinase	NA	NA	NA	NA
WP_086028406.1\|1641076_1641829_+	acetoacetate decarboxylase	NA	NA	NA	NA
WP_012127470.1\|1641873_1643835_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.3e-81	38.0
WP_012127471.1\|1644589_1645990_-	hypothetical protein	NA	NA	NA	NA
WP_012127472.1\|1646704_1647418_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012127473.1\|1647592_1648354_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012127474.1\|1648341_1648866_+	hypothetical protein	NA	NA	NA	NA
WP_012127475.1\|1649299_1650184_+	hypothetical protein	NA	NA	NA	NA
WP_144080917.1\|1650340_1652995_+	hypothetical protein	NA	NA	NA	NA
WP_012127477.1\|1653097_1653694_+	hypothetical protein	NA	NA	NA	NA
WP_012127146.1\|1653839_1655033_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_021017838.1\|1655192_1656098_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_021017837.1\|1656243_1657788_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.0e-70	34.0

DBSCAN-SWA_10

1665609 : 1725611

Enterobacteria_phage(30.0%)

transposase,integrase

attL 1662857:1662871|attR 1720109:1720123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1662857:1662871	attL	NA	NA	NA	NA
WP_012127491.1\|1665609_1667142_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.7e-26	40.1
WP_012127492.1\|1667201_1667366_-	hypothetical protein	NA	NA	NA	NA
WP_012127493.1\|1667340_1667556_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-10	48.4
WP_011999494.1\|1667552_1667864_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127494.1\|1667920_1668883_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012127495.1\|1669182_1670103_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	7.6e-170	95.7
WP_011998813.1\|1670317_1671517_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-101	47.8
WP_086028361.1\|1672669_1673792_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012127498.1\|1675300_1676194_+	hypothetical protein	NA	NA	NA	NA
WP_012127499.1\|1676474_1677596_-\|transposase	ISAs1-like element ISVha1 family transposase	NA	NA	NA	NA
WP_012127501.1\|1678526_1679447_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-172	96.4
WP_012127502.1\|1679765_1680887_+	hypothetical protein	NA	NA	NA	NA
WP_080514117.1\|1681171_1686046_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	8.0e-101	26.8
WP_012127504.1\|1686042_1686531_+	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA	NA	NA	NA
WP_086028364.1\|1686675_1687852_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.8e-115	63.3
WP_012127146.1\|1688226_1689420_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_011999348.1\|1689566_1690760_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012127507.1\|1691258_1691831_+	hypothetical protein	NA	NA	NA	NA
WP_012127508.1\|1691978_1692362_+	hypothetical protein	NA	NA	NA	NA
WP_012127511.1\|1693421_1694435_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_012127512.1\|1694437_1694776_+	hypothetical protein	NA	NA	NA	NA
WP_021017798.1\|1694931_1696254_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127514.1\|1696387_1697242_-	WYL domain-containing protein	NA	NA	NA	NA
WP_012127515.1\|1697444_1698224_+	hypothetical protein	NA	NA	NA	NA
WP_012127516.1\|1698227_1701167_+	hypothetical protein	NA	NA	NA	NA
WP_012127517.1\|1701159_1702572_+	hypothetical protein	NA	NA	NA	NA
WP_012127518.1\|1702568_1703135_+	hypothetical protein	NA	NA	NA	NA
WP_012127519.1\|1703279_1703579_-	T3SS regulon translocated regulator ExsE2	NA	NA	NA	NA
WP_012127520.1\|1703586_1704033_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_021017830.1\|1704391_1704799_+	YscW family type III secretion system pilotin	NA	NA	NA	NA
WP_012127524.1\|1705396_1706257_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005426156.1\|1706400_1707381_+	T3SS regulon anti-activator ExsD family protein	NA	NA	NA	NA
WP_012127525.1\|1707393_1707822_+	YscB family type III secretion system chaperone	NA	NA	NA	NA
WP_012127526.1\|1707821_1709693_+	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA
WP_012127527.1\|1709698_1711000_+	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA
WP_005426287.1\|1710986_1711193_+	EscE/YscE/SsaE family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_005528964.1\|1711209_1711458_+	type III secretion system needle filament subunit SctF	NA	NA	NA	NA
WP_012127528.1\|1711461_1711818_+	YscG family type III secretion system chaperone	NA	NA	NA	NA
WP_012127529.1\|1711817_1712480_+	YopR family T3SS polymerization control protein	NA	NA	NA	NA
WP_012127530.1\|1712488_1712833_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_010646247.1\|1712865_1713597_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_012127531.1\|1713589_1714255_+	type III secretion system sorting platform protein VscK	NA	NA	NA	NA
WP_012127532.1\|1714233_1714869_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA
WP_005426189.1\|1715095_1715491_+	hypothetical protein	NA	NA	NA	NA
WP_012127533.1\|1715494_1718398_+	hypothetical protein	NA	NA	NA	NA
WP_005426173.1\|1718681_1719119_+	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_012127534.1\|1719122_1720283_+	VopS family T3SS effector adenosine monophosphate-protein transferase	NA	NA	NA	NA
1720109:1720123	attR	NA	NA	NA	NA
WP_080514118.1\|1721826_1722822_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_086028365.1\|1722868_1724402_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012127538.1\|1724567_1725611_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1748919 : 1818516

uncultured_Caudovirales_phage(14.29%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999187.1\|1748919_1750245_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012127561.1\|1750285_1751416_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	4.5e-23	42.4
WP_012127562.1\|1751405_1755098_-	RHS repeat protein	NA	NA	NA	NA
WP_012127563.1\|1755164_1756283_-	hypothetical protein	NA	NA	NA	NA
WP_005426222.1\|1756992_1757328_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_041853205.1\|1757501_1757969_+	hypothetical protein	NA	NA	NA	NA
WP_012127566.1\|1758159_1759797_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.3e-34	34.8
WP_012127568.1\|1760152_1761289_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012127569.1\|1761291_1764453_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_005426166.1\|1764748_1765201_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_021017823.1\|1765230_1765977_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_012127571.1\|1766185_1767433_+	allantoate amidohydrolase	NA	NA	NA	NA
WP_021017822.1\|1767566_1768958_+	YfcC family protein	NA	NA	NA	NA
WP_012127573.1\|1768979_1769681_+	DUF1028 domain-containing protein	NA	NA	NA	NA
WP_012127574.1\|1769777_1771922_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012127575.1\|1772064_1773024_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012127576.1\|1773007_1773991_+	iron ABC transporter permease	NA	NA	NA	NA
WP_012127577.1\|1773990_1774953_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.5e-08	24.8
WP_012127578.1\|1774952_1775756_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	6.4e-16	30.0
WP_012127579.1\|1775755_1776616_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012127580.1\|1776682_1777639_-	AEC family transporter	NA	NA	NA	NA
WP_012126577.1\|1777704_1778466_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-15	44.0
WP_021017817.1\|1778686_1778824_-	hypothetical protein	NA	NA	NA	NA
WP_144080916.1\|1778793_1780224_+	transporter substrate-binding domain-containing protein	A0A1P8CWQ1	Bacillus_phage	8.8e-08	38.2
WP_012127584.1\|1780366_1782547_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_012127585.1\|1783344_1784367_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_012126704.1\|1785112_1786138_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012127586.1\|1786452_1787451_-	hypothetical protein	NA	NA	NA	NA
WP_041853204.1\|1787447_1788776_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	1.6e-27	32.7
WP_012127588.1\|1789064_1790225_+	DNA cytosine methyltransferase	A0A1P8CX13	Bacillus_phage	5.3e-19	29.2
WP_012127589.1\|1790343_1792296_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_012127590.1\|1792296_1793433_+	DUF3696 domain-containing protein	NA	NA	NA	NA
WP_012127592.1\|1793446_1794334_+	hypothetical protein	NA	NA	NA	NA
WP_021017813.1\|1794740_1796285_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|1796345_1796699_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1796695_1797007_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127594.1\|1797063_1799421_+	collagenase	NA	NA	NA	NA
WP_012127595.1\|1799515_1800916_-	guanine deaminase	NA	NA	NA	NA
WP_010646166.1\|1801310_1801568_+	hypothetical protein	NA	NA	NA	NA
WP_041853203.1\|1801714_1802743_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_012126704.1\|1802848_1803874_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_021017812.1\|1804323_1805103_-\|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	NA	NA	NA	NA
WP_012127598.1\|1805229_1805994_-	hypothetical protein	NA	NA	NA	NA
WP_012127599.1\|1806332_1807307_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_012127600.1\|1807360_1808557_+	methyltransferase	NA	NA	NA	NA
WP_012127601.1\|1808650_1809775_-	alanine dehydrogenase	NA	NA	NA	NA
WP_005528862.1\|1809931_1810426_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_012127602.1\|1810578_1813941_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.6e-87	49.3
WP_012127603.1\|1814002_1814629_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_048814299.1\|1814635_1815985_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.3e-85	43.4
WP_012127605.1\|1816077_1817385_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.8e-90	42.8
WP_162471675.1\|1817480_1818516_-\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2

DBSCAN-SWA_12

1875809 : 2043000

158

Vibrio_phage(29.69%)

tRNA,portal,tail,transposase,integrase,capsid,terminase,head,plate,lysis

attL 1940732:1940791|attR 2040652:2041354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086028361.1\|1875809_1876932_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012127648.1\|1878281_1879064_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-13	27.5
WP_005425745.1\|1879060_1880056_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_005425771.1\|1880055_1880943_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_012127649.1\|1880929_1881892_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_005529312.1\|1881891_1883511_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_005425749.1\|1883793_1884804_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_005425704.1\|1885037_1885709_+	phage shock protein PspA	NA	NA	NA	NA
WP_005425720.1\|1885723_1885957_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_005425740.1\|1885949_1886339_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_012127651.1\|1886495_1887527_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012127652.1\|1887528_1888608_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012127653.1\|1888604_1891715_+	efflux RND transporter permease subunit VmeI	S5VL66	Leptospira_phage	2.2e-27	20.0
WP_012127654.1\|1891784_1892375_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_012127656.1\|1893020_1894064_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005429716.1\|1894802_1895279_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_021017801.1\|1895674_1897246_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.8e-23	25.7
WP_012127658.1\|1897473_1899357_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.2e-21	44.8
WP_012127661.1\|1899521_1900241_-	3'-5' exonuclease	NA	NA	NA	NA
WP_005429722.1\|1900249_1902139_-	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_005429724.1\|1902358_1903000_+	porin family protein	NA	NA	NA	NA
WP_005429727.1\|1903114_1904305_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_005429731.1\|1905068_1905368_-	hypothetical protein	NA	NA	NA	NA
WP_005429733.1\|1905568_1905799_-	hypothetical protein	NA	NA	NA	NA
WP_012127666.1\|1905978_1907370_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_010649555.1\|1907468_1907690_+	hypothetical protein	NA	NA	NA	NA
WP_012127667.1\|1907720_1908134_+	hypothetical protein	NA	NA	NA	NA
WP_041853376.1\|1908261_1909662_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.1e-85	37.6
WP_012127669.1\|1910552_1910723_-	hypothetical protein	NA	NA	NA	NA
WP_005376896.1\|1911219_1911582_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	4.1e-10	38.6
WP_012127670.1\|1911751_1912537_-	response regulator transcription factor	NA	NA	NA	NA
WP_012127671.1\|1913003_1913471_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012127672.1\|1913577_1915293_-	EAL domain-containing protein	NA	NA	NA	NA
WP_012127676.1\|1916963_1918325_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_021017797.1\|1918421_1919675_-	septum formation initiator	NA	NA	NA	NA
WP_012127678.1\|1920021_1920621_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_012127679.1\|1920745_1921306_+	heme NO-binding domain-containing protein	NA	NA	NA	NA
WP_012127682.1\|1923166_1924537_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.6e-43	41.1
WP_041853198.1\|1924830_1926348_+	fumarate hydratase	NA	NA	NA	NA
WP_005433708.1\|1926577_1926763_+	hypothetical protein	NA	NA	NA	NA
WP_012127684.1\|1926919_1928296_+	YcjX family protein	NA	NA	NA	NA
WP_012127685.1\|1928292_1929333_+	TIGR01620 family protein	NA	NA	NA	NA
WP_012127686.1\|1929433_1930978_+	transcriptional regulator TyrR	NA	NA	NA	NA
WP_012127687.1\|1931061_1931646_+	ribosomal protein S5-alanine N-acetyltransferase	NA	NA	NA	NA
WP_012127688.1\|1931646_1932234_+	HD domain-containing protein	NA	NA	NA	NA
WP_012127689.1\|1932247_1932721_+	DUF2947 domain-containing protein	NA	NA	NA	NA
WP_012127690.1\|1932976_1933249_-	hypothetical protein	NA	NA	NA	NA
WP_021017796.1\|1933445_1933796_-	hypothetical protein	NA	NA	NA	NA
WP_012127692.1\|1934014_1935214_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	7.4e-101	47.5
WP_011999463.1\|1935388_1936432_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011999494.1\|1936653_1936965_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012126950.1\|1936961_1937315_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.6e-14	43.5
WP_021017764.1\|1937375_1938920_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_012127694.1\|1939278_1939722_-	hypothetical protein	NA	NA	NA	NA
WP_012127695.1\|1940219_1940615_+	hypothetical protein	NA	NA	NA	NA
1940732:1940791	attL	NA	NA	NA	NA
WP_011999494.1\|1940813_1941125_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127696.1\|1941121_1941535_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	8.1e-15	44.6
WP_012127697.1\|1941664_1943197_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.9e-110	42.1
WP_012127698.1\|1943207_1943948_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.7e-48	43.2
WP_048814106.1\|1944132_1945677_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	3.8e-25	39.5
WP_012127700.1\|1945717_1945978_-	hypothetical protein	NA	NA	NA	NA
WP_012127701.1\|1946437_1947307_-	hypothetical protein	NA	NA	NA	NA
WP_012127343.1\|1947275_1947410_-\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_048814088.1\|1947422_1948967_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|1949027_1949381_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1949377_1949689_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127702.1\|1949740_1950013_-	hypothetical protein	NA	NA	NA	NA
WP_041853373.1\|1950550_1951564_-	restriction endonuclease	NA	NA	NA	NA
WP_086028361.1\|1951921_1953045_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012127704.1\|1953255_1954491_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.8e-76	41.4
WP_010648742.1\|1954490_1954721_-	excisionase family protein	NA	NA	NA	NA
WP_012127705.1\|1954908_1955121_-	hypothetical protein	A0A1V0E8D5	Vibrio_phage	1.4e-10	43.3
WP_012127706.1\|1955173_1955992_-	DUF2303 family protein	R9TRN9	Vibrio_phage	2.3e-125	81.6
WP_012127707.1\|1956032_1956428_-	hypothetical protein	R9TMP0	Vibrio_phage	1.9e-61	89.3
WP_012127709.1\|1956743_1957409_-	LexA family transcriptional regulator	A0A1V0E8B5	Vibrio_phage	1.4e-72	59.6
WP_012127710.1\|1957518_1957785_+	helix-turn-helix transcriptional regulator	A0A1V0E8C7	Vibrio_phage	3.4e-14	50.7
WP_012127711.1\|1957774_1958227_+	hypothetical protein	R9TRN6	Vibrio_phage	1.7e-42	64.9
WP_012127712.1\|1958223_1958493_+	hypothetical protein	NA	NA	NA	NA
WP_012127714.1\|1958649_1959171_+	hypothetical protein	R9TNL7	Vibrio_phage	3.8e-94	91.3
WP_012127715.1\|1959170_1960127_+	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	2.2e-124	72.5
WP_005376941.1\|1960137_1960350_+	hypothetical protein	A0A1V0E856	Vibrio_phage	3.6e-11	51.8
WP_021017787.1\|1960343_1961039_+	phage antirepressor KilAC domain-containing protein	R9TMN1	Vibrio_phage	3.0e-78	68.0
WP_012127717.1\|1961035_1961347_+	hypothetical protein	R9TNL4	Vibrio_phage	3.6e-47	89.1
WP_012127718.1\|1961339_1962311_+	DUF968 domain-containing protein	R9TRM9	Vibrio_phage	6.1e-61	43.9
WP_021017786.1\|1962736_1963501_+	hypothetical protein	NA	NA	NA	NA
WP_012127721.1\|1966626_1967976_+	hypothetical protein	NA	NA	NA	NA
WP_012127722.1\|1967984_1968812_+	hypothetical protein	NA	NA	NA	NA
WP_021017785.1\|1969374_1969833_+	hypothetical protein	NA	NA	NA	NA
WP_012127724.1\|1969947_1970712_-	hypothetical protein	NA	NA	NA	NA
WP_012127727.1\|1971741_1972383_+	hypothetical protein	NA	NA	NA	NA
WP_012127728.1\|1972687_1973356_+	hypothetical protein	R9TRM8	Vibrio_phage	2.1e-81	65.6
WP_005376950.1\|1973510_1973702_+	hypothetical protein	A0A1V1FD92	Vibrio_phage	1.7e-12	54.1
WP_012127729.1\|1973688_1974168_+	lysozyme	A0A1U9GSH3	Vibrio_phage	3.8e-48	58.7
WP_012127730.1\|1974149_1974632_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	2.1e-22	48.8
WP_012127731.1\|1974746_1975349_+	hypothetical protein	D4HTU0	Vibrio_phage	1.6e-19	37.0
WP_144080913.1\|1975236_1977213_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	2.3e-123	39.6
WP_005424556.1\|1977209_1977419_+	gpW family protein	NA	NA	NA	NA
WP_012127733.1\|1977418_1978975_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	7.0e-160	56.0
WP_012127734.1\|1978967_1980320_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.9e-89	42.6
WP_012127735.1\|1980333_1980675_+\|head	head decoration protein	NA	NA	NA	NA
WP_012127736.1\|1980713_1981751_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.9e-68	41.8
WP_012127737.1\|1981816_1982308_+	hypothetical protein	NA	NA	NA	NA
WP_021017783.1\|1982358_1982727_+	hypothetical protein	NA	NA	NA	NA
WP_144080912.1\|1982710_1983367_+	hypothetical protein	D4HTU8	Vibrio_phage	2.9e-22	35.2
WP_012127740.1\|1983347_1983914_+	hypothetical protein	NA	NA	NA	NA
WP_012127741.1\|1983879_1984518_+\|plate	phage baseplate assembly protein V	A2I2X5	Vibrio_virus	2.8e-38	52.6
WP_012127742.1\|1984517_1984868_+\|plate	phage baseplate protein	A2I2X7	Vibrio_virus	2.8e-24	52.0
WP_012127743.1\|1984877_1985891_+\|plate	baseplate J/gp47 family protein	A0A1I9KG27	Aeromonas_phage	6.0e-43	33.5
WP_021017782.1\|1985856_1986612_+\|tail	phage tail protein I	NA	NA	NA	NA
WP_012127745.1\|1986608_1987142_+	hypothetical protein	K7RVY3	Vibrio_phage	4.4e-37	47.1
WP_012127746.1\|1987154_1987883_+	hypothetical protein	Q6R4W1	Vibrio_virus	5.9e-08	25.7
WP_012127747.1\|1987885_1988119_+	hypothetical protein	NA	NA	NA	NA
WP_012127748.1\|1988205_1988403_+	hypothetical protein	NA	NA	NA	NA
WP_012127749.1\|1988406_1989570_+\|tail	tail protein	Q6R4W2	Vibrio_virus	6.1e-116	55.6
WP_137282510.1\|1989593_1990076_+\|tail	phage major tail tube protein	B0ZSG9	Halomonas_phage	2.7e-17	35.5
WP_012127751.1\|1990149_1990743_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012127752.1\|1990861_1993855_+\|tail	phage tail tape measure protein	A2I2Y1	Vibrio_virus	1.5e-70	44.9
WP_012127753.1\|1993851_1994253_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	1.4e-19	40.6
WP_012127754.1\|1994249_1994471_+\|tail	tail protein X	NA	NA	NA	NA
WP_012127755.1\|1994461_1995475_+	hypothetical protein	A2I2Y5	Vibrio_virus	5.3e-92	50.4
WP_012127756.1\|1995701_1996658_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	4.9e-55	41.8
WP_012127757.1\|1996895_1997726_+	hypothetical protein	NA	NA	NA	NA
WP_011999463.1\|1998196_1999240_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080514125.1\|1999332_1999449_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_011999328.1\|1999443_2000643_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	5.2e-102	48.0
WP_012127759.1\|2001641_2002859_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.6e-101	48.0
WP_012127761.1\|2003436_2004144_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_021017781.1\|2004246_2005719_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.9e-130	49.6
WP_048814111.1\|2006385_2006772_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_011999494.1\|2007208_2007520_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2007516_2007870_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012127766.1\|2009854_2010724_+	hypothetical protein	NA	NA	NA	NA
WP_012127767.1\|2011143_2012337_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.7e-68	38.4
WP_012127769.1\|2012715_2013744_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012127771.1\|2014195_2014549_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-14	43.5
WP_021018248.1\|2015847_2016891_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012127773.1\|2017402_2018641_-	cysteine desulfurase-like protein	NA	NA	NA	NA
WP_012127774.1\|2018618_2019257_-	2OG-Fe dioxygenase family protein	NA	NA	NA	NA
WP_041853197.1\|2019564_2020401_-	DUF2797 domain-containing protein	NA	NA	NA	NA
WP_012127776.1\|2020739_2022086_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.4e-17	33.3
WP_012127777.1\|2022264_2023635_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_005533464.1\|2023881_2024616_-	YdcF family protein	NA	NA	NA	NA
WP_005533465.1\|2024782_2026471_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_012127778.1\|2026707_2029062_+	ATP-dependent RNA helicase	A0A2H4UU36	Bodo_saltans_virus	9.4e-31	27.2
WP_012127779.1\|2029218_2029938_+	phospholipase A	NA	NA	NA	NA
WP_012127780.1\|2030173_2030551_+	hypothetical protein	NA	NA	NA	NA
WP_012127781.1\|2030837_2032511_+	alkaline phosphatase D family protein	A0A2K9KZV0	Tupanvirus	2.2e-05	25.9
WP_012127782.1\|2032605_2033709_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_021017777.1\|2034556_2034904_+	hypothetical protein	NA	NA	NA	NA
WP_012127784.1\|2035334_2035673_+	hypothetical protein	NA	NA	NA	NA
WP_021017776.1\|2035756_2036104_+	hypothetical protein	NA	NA	NA	NA
WP_086028365.1\|2036297_2037832_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012127786.1\|2038181_2038514_+	hypothetical protein	NA	NA	NA	NA
WP_021017774.1\|2038530_2038908_+	hypothetical protein	NA	NA	NA	NA
WP_021017773.1\|2038919_2040668_+	hypothetical protein	S5WIG9	Leptospira_phage	8.2e-16	31.0
WP_011999494.1\|2040733_2041045_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2041041_2041395_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
2040652:2041354	attR	NA	NA	NA	NA
WP_021017813.1\|2041455_2043000_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2

DBSCAN-SWA_13

2081524 : 2152935

Leptospira_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021017772.1\|2081524_2083069_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|2083129_2083483_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012127819.1\|2084242_2084527_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_012127820.1\|2084545_2084926_+	RidA family protein	NA	NA	NA	NA
WP_012127823.1\|2085316_2085631_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_012127824.1\|2086182_2086992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012127825.1\|2087679_2088663_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.3e-37	39.5
WP_012127826.1\|2088681_2091102_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.9e-08	26.5
WP_021017813.1\|2091502_2093047_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_012127827.1\|2093107_2093461_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.3e-15	44.6
WP_011999494.1\|2093457_2093769_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127829.1\|2094701_2096375_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.1e-21	27.3
WP_012127830.1\|2096371_2097976_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-14	31.2
WP_012127831.1\|2098095_2099256_-	histidine decarboxylase	A0A2P0VP20	Tetraselmis_virus	2.4e-64	37.1
WP_012127832.1\|2099847_2102724_+	peptide synthetase	NA	NA	NA	NA
WP_041853194.1\|2102840_2104166_+	anguibactin biosynthesis histamine N-monooxygenase AngU	NA	NA	NA	NA
WP_048814115.1\|2104269_2105034_-	thioesterase	NA	NA	NA	NA
WP_012127835.1\|2105036_2108165_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.5e-47	26.9
WP_012127836.1\|2108240_2110433_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012127837.1\|2110571_2111555_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012127838.1\|2111611_2112565_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005533415.1\|2112561_2113506_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-59	36.2
WP_012127839.1\|2113916_2116052_+	peptide synthetase	NA	NA	NA	NA
WP_041853358.1\|2116230_2116974_-	metallophosphoesterase	NA	NA	NA	NA
WP_012127841.1\|2117065_2117944_-	AEC family transporter	NA	NA	NA	NA
WP_005427969.1\|2118470_2118767_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.1e-12	38.9
WP_021017766.1\|2118903_2119704_-	RelA/SpoT domain-containing protein	NA	NA	NA	NA
WP_005533410.1\|2120041_2120692_+	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_012127843.1\|2120778_2121954_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_012127844.1\|2122101_2122989_-	cytidine deaminase	NA	NA	NA	NA
WP_009705896.1\|2123253_2123931_-	LrgB family protein	NA	NA	NA	NA
WP_012127845.1\|2123932_2124307_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_005528196.1\|2124365_2125787_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_005528198.1\|2125948_2126629_-	DUF1826 domain-containing protein	NA	NA	NA	NA
WP_005528200.1\|2126856_2128230_-	L-cystine transporter	NA	NA	NA	NA
WP_012127846.1\|2128423_2129119_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_012127849.1\|2130415_2131459_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_021017765.1\|2131458_2132265_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_012127851.1\|2132261_2132810_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_005528211.1\|2132806_2133421_+	alpha-ribazole phosphatase	NA	NA	NA	NA
WP_012127852.1\|2133503_2135303_+	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_012127853.1\|2135541_2136570_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_012127854.1\|2136672_2137668_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_012127855.1\|2137654_2138422_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2K9L407	Tupanvirus	2.8e-08	24.5
WP_012127656.1\|2138435_2139479_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012127856.1\|2139556_2139973_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_041853192.1\|2140055_2140631_-	nucleoside triphosphate pyrophosphohydrolase family protein	A0A088C537	Shewanella_sp._phage	2.4e-33	43.0
WP_012127858.1\|2140739_2141321_-	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_012127859.1\|2141403_2142615_-	MFS transporter	NA	NA	NA	NA
WP_012127860.1\|2142727_2143597_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011999494.1\|2143926_2144238_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998799.1\|2144234_2144588_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021017764.1\|2144648_2146193_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_012127861.1\|2146236_2146464_-	glutaredoxin family protein	NA	NA	NA	NA
WP_012127862.1\|2146605_2147121_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_012127863.1\|2147107_2148274_+	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_012127867.1\|2150177_2150579_-	hypothetical protein	NA	NA	NA	NA
WP_012127868.1\|2150606_2151800_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.1
WP_012127501.1\|2152014_2152935_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-172	96.4

DBSCAN-SWA_14

2156634 : 2185344

Vibrio_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086028371.1\|2156634_2157431_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012127872.1\|2157456_2158305_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-152	96.3
WP_012127874.1\|2158446_2159361_+	bacteriorhodopsin	NA	NA	NA	NA
WP_041853191.1\|2159448_2160312_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	4.2e-05	23.4
WP_012127876.1\|2160301_2161915_+	phytoene desaturase	NA	NA	NA	NA
WP_012127877.1\|2161895_2162810_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_012127878.1\|2162796_2163954_+	lycopene cyclase	NA	NA	NA	NA
WP_012127879.1\|2163950_2164820_+	Brp/Blh family beta-carotene 15,15'-dioxygenase	NA	NA	NA	NA
WP_012127880.1\|2164933_2165362_-	hypothetical protein	NA	NA	NA	NA
WP_012127146.1\|2167542_2168736_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_162471672.1\|2169588_2170623_+\|transposase	IS630 family transposase	M4M9P8	Vibrio_phage	1.1e-12	63.2
WP_012127885.1\|2172109_2173216_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_021017757.1\|2173657_2174701_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012127887.1\|2174905_2175370_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_005427851.1\|2175758_2176832_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_012127888.1\|2176824_2177955_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_012127889.1\|2177964_2179002_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_012127890.1\|2179022_2179691_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_012127891.1\|2179889_2180552_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_012127146.1\|2181116_2182310_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_009697431.1\|2183097_2183436_+	hypothetical protein	NA	NA	NA	NA
WP_012127024.1\|2183964_2185344_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	2.9e-48	26.9

DBSCAN-SWA_15

2303680 : 2313104

Vibrio_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012127984.1\|2303680_2305411_+	response regulator	A0A1V0SGX0	Hokovirus	3.3e-41	31.5
WP_012127985.1\|2305580_2305949_-	hypothetical protein	Q858Q3	Vibrio_phage	1.1e-44	74.6
WP_021017735.1\|2306126_2306750_+	3'-5' exonuclease	W6ASW5	Vibrio_phage	1.4e-37	47.6
WP_005531344.1\|2306753_2306969_+	hypothetical protein	A0A1W6UGD1	Vibrio_phage	7.2e-31	87.3
WP_012127987.1\|2306952_2308098_+	replication initiation factor domain-containing protein	A0A1W6UG38	Vibrio_phage	1.4e-213	92.4
WP_012127988.1\|2308101_2308461_+	DUF1293 family protein	Q783U4	Vibrio_phage	7.2e-60	95.8
WP_012127989.1\|2308466_2308697_+	hypothetical protein	Q783U3	Vibrio_phage	8.2e-33	90.8
WP_012127990.1\|2308702_2308951_+	hypothetical protein	Q783U2	Vibrio_phage	3.6e-26	81.7
WP_012127993.1\|2309476_2310574_+	hypothetical protein	Q783U1	Vibrio_phage	3.1e-85	61.2
WP_021017733.1\|2310575_2310920_+	DUF2523 domain-containing protein	Q783U0	Vibrio_phage	1.2e-40	69.3
WP_021017732.1\|2310924_2312310_+	hypothetical protein	Q783T9	Vibrio_phage	1.2e-232	83.3
WP_005531371.1\|2312918_2313104_+	DUF3018 family protein	A0A2I7RE17	Vibrio_phage	4.0e-06	37.3

DBSCAN-SWA_16

2332616 : 2498778

119

Leptospira_phage(24.24%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080514133.1\|2332616_2333984_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.5e-44	26.4
WP_012128015.1\|2334046_2335666_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	7.3e-59	42.1
WP_021017726.1\|2336070_2340912_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_012128017.1\|2341199_2342393_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	3.7e-68	38.1
WP_080514134.1\|2342505_2342670_-	DUF2835 family protein	NA	NA	NA	NA
WP_012128018.1\|2342736_2345343_-	aminopeptidase N	NA	NA	NA	NA
WP_012128019.1\|2345575_2346241_-	hypothetical protein	NA	NA	NA	NA
WP_012128020.1\|2346449_2348444_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.0e-86	32.4
WP_048814132.1\|2348461_2349088_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_005532379.1\|2349186_2349660_-	GAF domain-containing protein	NA	NA	NA	NA
WP_012128022.1\|2349752_2351549_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-38	27.4
WP_021017723.1\|2351597_2352821_+	paraquat-inducible protein A	NA	NA	NA	NA
WP_012128024.1\|2352813_2355468_+	MCE family protein	NA	NA	NA	NA
WP_041853343.1\|2355602_2357039_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_005430978.1\|2357386_2358220_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012128027.1\|2358403_2359756_+	hypothetical protein	NA	NA	NA	NA
WP_012128028.1\|2359778_2360270_-	DUF4442 domain-containing protein	NA	NA	NA	NA
WP_005430973.1\|2360665_2361718_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	1.5e-84	45.9
WP_005430971.1\|2361750_2362233_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
WP_012128029.1\|2362343_2363264_-	siroheme synthase	NA	NA	NA	NA
WP_041853185.1\|2363724_2364753_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	2.6e-78	44.1
WP_005532389.1\|2364833_2366039_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012128033.1\|2366040_2367138_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005430960.1\|2367161_2367911_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-32	39.1
WP_005532392.1\|2368265_2368928_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	6.0e-44	50.0
WP_012128034.1\|2369281_2369611_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_005532394.1\|2369658_2369931_-	acylphosphatase	NA	NA	NA	NA
WP_048814134.1\|2370021_2371425_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.9e-19	43.7
WP_010647923.1\|2371644_2372838_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012128036.1\|2372905_2379289_-	VWA domain-containing protein	NA	NA	NA	NA
WP_041853184.1\|2379691_2381008_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_010650626.1\|2381009_2381636_+	OmpA family protein	NA	NA	NA	NA
WP_011999494.1\|2381915_2382227_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2382223_2382577_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_048814135.1\|2382637_2384182_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.1e-71	34.0
WP_012128040.1\|2384171_2386616_-	tandem-95 repeat protein	NA	NA	NA	NA
WP_012128041.1\|2387012_2388323_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_012128042.1\|2388326_2388941_+	OmpA family protein	NA	NA	NA	NA
WP_005426565.1\|2389053_2389407_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_012128044.1\|2389596_2391564_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.3e-13	30.1
WP_005426624.1\|2391520_2392219_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.7e-79	63.6
WP_012128045.1\|2392233_2392884_-	7-carboxy-7-deazaguanine synthase QueE	A0A1B0Z0A9	Vibrio_phage	4.1e-13	28.9
WP_012128046.1\|2393048_2393855_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005530968.1\|2393904_2394414_-	hypothetical protein	NA	NA	NA	NA
WP_012128048.1\|2394427_2396539_-	LruC domain-containing protein	NA	NA	NA	NA
WP_012128049.1\|2396875_2398318_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_012128052.1\|2399182_2399665_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012128053.1\|2399824_2401705_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	8.4e-67	32.0
WP_012128054.1\|2401766_2402954_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_012128055.1\|2402977_2405587_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_012128056.1\|2405719_2406862_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_012128057.1\|2406992_2407889_-	methylisocitrate lyase	NA	NA	NA	NA
WP_010448100.1\|2407901_2408621_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_048814136.1\|2411847_2413392_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.1e-71	34.7
WP_011998799.1\|2413452_2413806_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|2413802_2414114_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012128063.1\|2415086_2418233_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021017713.1\|2418547_2418853_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011999348.1\|2418870_2420064_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_011998799.1\|2420195_2420549_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012128066.1\|2420608_2422141_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	35.0
WP_012128067.1\|2422418_2422841_+	type II secretion system protein	NA	NA	NA	NA
WP_086028361.1\|2422855_2423979_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_005426568.1\|2424261_2425239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_012128068.1\|2425459_2425954_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_005451899.1\|2425974_2427501_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_012128069.1\|2427655_2428426_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012128070.1\|2428591_2430328_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-18	39.5
WP_012128071.1\|2430418_2431390_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_012128072.1\|2431615_2433136_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_012128073.1\|2433384_2435148_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_021017710.1\|2436690_2438211_-	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_041853341.1\|2438705_2440016_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_005531010.1\|2440666_2442115_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	E3SJC4	Synechococcus_phage	4.7e-33	32.0
WP_012128079.1\|2442155_2442872_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_041853183.1\|2442868_2444371_-	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	1.3e-89	38.7
WP_012128081.1\|2445016_2445703_-	response regulator	NA	NA	NA	NA
WP_041853340.1\|2445699_2447319_-	sensor histidine kinase	NA	NA	NA	NA
WP_012128083.1\|2448174_2448402_+	hypothetical protein	NA	NA	NA	NA
WP_012128084.1\|2448554_2449946_+	TolC family protein	NA	NA	NA	NA
WP_005433845.1\|2449949_2450930_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_012128085.1\|2450948_2452136_+	ABC transporter permease	NA	NA	NA	NA
WP_012128086.1\|2452132_2453284_+	ABC transporter permease	NA	NA	NA	NA
WP_086028378.1\|2453416_2454549_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.7e-26	32.6
WP_011999494.1\|2454616_2454928_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2454924_2455278_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021017708.1\|2455338_2456883_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.0e-70	34.7
WP_012128089.1\|2457214_2457544_+	hypothetical protein	NA	NA	NA	NA
WP_012128091.1\|2458450_2458708_-	hypothetical protein	NA	NA	NA	NA
WP_011999114.1\|2459088_2460009_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-171	96.4
WP_012128092.1\|2460212_2461661_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_021017707.1\|2461841_2463434_-	S8 family peptidase	A0A2K9L1P3	Tupanvirus	4.4e-32	32.8
WP_012128095.1\|2464831_2466256_-	aspartate kinase	NA	NA	NA	NA
WP_012128096.1\|2466344_2466731_-	ectoine synthase	NA	NA	NA	NA
WP_012128097.1\|2466744_2468010_-	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_041853181.1\|2468043_2468577_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_005433884.1\|2468920_2470585_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.2e-25	25.1
WP_012128100.1\|2470821_2471571_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012128101.1\|2471567_2473448_-	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_012128103.1\|2474541_2475915_-\|tRNA	cysteine--tRNA ligase	F1C979	Terra1_virus	1.1e-34	31.3
WP_012128104.1\|2476249_2478151_-	DUF3857 and transglutaminase domain-containing protein	NA	NA	NA	NA
WP_012128105.1\|2478147_2479230_-	hypothetical protein	NA	NA	NA	NA
WP_012128107.1\|2479480_2480509_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012128108.1\|2480748_2482686_+	LTA synthase family protein	NA	NA	NA	NA
WP_021017704.1\|2482799_2483162_+	glyoxalase	NA	NA	NA	NA
WP_021017703.1\|2483288_2483672_+	hypothetical protein	NA	NA	NA	NA
WP_005434001.1\|2483783_2484518_-	chromosome segregation ATPase	NA	NA	NA	NA
WP_005433933.1\|2485455_2486832_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_012128111.1\|2487274_2488027_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005433926.1\|2488023_2488485_+	hypothetical protein	NA	NA	NA	NA
WP_012128112.1\|2488988_2490461_+	aerolysin family beta-barrel pore-forming toxin	NA	NA	NA	NA
WP_012128113.1\|2490644_2491313_+	ParA family protein	NA	NA	NA	NA
WP_012128114.1\|2491597_2493067_+	aerolysin family beta-barrel pore-forming toxin	NA	NA	NA	NA
WP_012128115.1\|2493149_2493716_-	hypothetical protein	NA	NA	NA	NA
WP_012128116.1\|2493715_2494351_-	LysE family translocator	NA	NA	NA	NA
WP_012128117.1\|2494767_2496240_+	carboxypeptidase M32	NA	NA	NA	NA
WP_012128118.1\|2496289_2496862_-	hypothetical protein	NA	NA	NA	NA
WP_012128119.1\|2496919_2497441_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_011999348.1\|2497584_2498778_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4

DBSCAN-SWA_17

2534272 : 2598745

Enterobacteria_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012128146.1\|2534272_2535031_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	8.4e-42	40.4
WP_012128147.1\|2535061_2535463_+	hypothetical protein	NA	NA	NA	NA
WP_005535753.1\|2535599_2535950_+	hypothetical protein	NA	NA	NA	NA
WP_012128148.1\|2535972_2537919_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_012128149.1\|2538062_2538503_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_005433656.1\|2538704_2539235_-	exonuclease domain-containing protein	NA	NA	NA	NA
WP_041853331.1\|2539317_2540859_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_005442696.1\|2541145_2541778_+	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_012128151.1\|2541777_2543742_+	Hsp70 family protein	A0A1V0SG59	Hokovirus	3.3e-13	25.8
WP_012128152.1\|2543797_2546623_+	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	1.5e-11	28.4
WP_005377692.1\|2546708_2546903_-	hypothetical protein	NA	NA	NA	NA
WP_005533850.1\|2546989_2547676_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_012128153.1\|2547932_2548424_+	type II secretion system protein	NA	NA	NA	NA
WP_012128154.1\|2548684_2550424_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.6e-49	28.6
WP_012128155.1\|2550426_2552205_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.2e-23	23.0
WP_005433911.1\|2552470_2553019_+	hypothetical protein	NA	NA	NA	NA
WP_005433984.1\|2553202_2553418_-	hypothetical protein	NA	NA	NA	NA
WP_012128156.1\|2553517_2554642_-	c-di-GMP phosphodiesterase	NA	NA	NA	NA
WP_021017694.1\|2554900_2556106_-	amino acid permease	NA	NA	NA	NA
WP_012128159.1\|2556279_2557473_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_012128160.1\|2557653_2558286_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_005433965.1\|2559931_2560534_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_012128162.1\|2560702_2561470_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	5.4e-36	38.9
WP_005434030.1\|2561800_2562757_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041853178.1\|2562953_2563835_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_012128166.1\|2563856_2565401_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_012128168.1\|2565896_2567108_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_021017691.1\|2567568_2569275_+	EAL domain-containing protein	NA	NA	NA	NA
WP_041853329.1\|2569381_2569855_-	response regulator	NA	NA	NA	NA
WP_012128172.1\|2570129_2570609_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041853328.1\|2570605_2571082_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012128174.1\|2571175_2572204_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_021017690.1\|2572308_2572824_+	YkgB family protein	NA	NA	NA	NA
WP_011999348.1\|2572776_2573970_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012128176.1\|2574210_2574930_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012128177.1\|2574931_2575936_-	cupin	NA	NA	NA	NA
WP_012128178.1\|2576018_2576753_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_005374756.1\|2576754_2578047_-	histidinol dehydrogenase	NA	NA	NA	NA
WP_012128179.1\|2578336_2579086_+	aldolase	NA	NA	NA	NA
WP_012128180.1\|2579236_2580193_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012128183.1\|2581513_2582077_+	TRAP transporter small permease	NA	NA	NA	NA
WP_012128184.1\|2582073_2583354_+	TRAP transporter large permease	NA	NA	NA	NA
WP_012128186.1\|2583885_2584860_+	ester cyclase	NA	NA	NA	NA
WP_012128187.1\|2584909_2585905_+	ester cyclase	NA	NA	NA	NA
WP_012128188.1\|2585897_2587643_+	sodium/solute symporter	A0A240F3J2	Aeromonas_phage	5.7e-17	23.3
WP_012127098.1\|2587759_2589082_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012128189.1\|2589151_2589520_-	hypothetical protein	NA	NA	NA	NA
WP_041853176.1\|2590504_2591167_-	peptidase E	NA	NA	NA	NA
WP_144080902.1\|2591181_2591343_-	DUF1287 domain-containing protein	NA	NA	NA	NA
WP_012128194.1\|2591633_2591864_+	PAS factor family protein	NA	NA	NA	NA
WP_011999494.1\|2592108_2592420_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2592416_2592770_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_012128195.1\|2592829_2594362_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.6e-71	35.0
WP_021017687.1\|2596550_2597342_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012128200.1\|2597545_2598745_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	3.3e-101	48.1

DBSCAN-SWA_18

2826594 : 2916023

Enterobacteria_phage(23.53%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086028385.1\|2826594_2828128_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012126704.1\|2829405_2830431_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041853311.1\|2830844_2831873_-	methionine synthase	NA	NA	NA	NA
WP_012128378.1\|2831903_2832878_-	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_012128380.1\|2833352_2833613_+	hypothetical protein	NA	NA	NA	NA
WP_012128382.1\|2833983_2838213_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_012128383.1\|2838212_2838968_+	hypothetical protein	NA	NA	NA	NA
WP_021018048.1\|2840192_2840876_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012128385.1\|2841031_2842231_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.5e-101	47.8
WP_011999327.1\|2842341_2843358_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086028361.1\|2843483_2844607_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012128387.1\|2845180_2846374_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	3.5e-66	37.6
WP_162600500.1\|2847691_2847928_-	hypothetical protein	NA	NA	NA	NA
WP_086028371.1\|2848285_2849082_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_021018044.1\|2850865_2851147_+	hypothetical protein	NA	NA	NA	NA
WP_012128395.1\|2851133_2851340_+	hypothetical protein	NA	NA	NA	NA
WP_012128396.1\|2851423_2851855_+	regulatory protein RecX	NA	NA	NA	NA
WP_012128398.1\|2852355_2852970_+	3'-5' exonuclease	A0A0A7RWA3	Clostridium_phage	1.9e-20	36.7
WP_012128399.1\|2853034_2853463_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_012128402.1\|2854735_2855455_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-40	40.9
WP_012128403.1\|2855447_2856731_-	ABC transporter permease	NA	NA	NA	NA
WP_012128404.1\|2856733_2857978_-	ABC transporter permease	NA	NA	NA	NA
WP_012128405.1\|2857974_2859246_-	TolC family protein	NA	NA	NA	NA
WP_012128406.1\|2859238_2860375_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012128408.1\|2860751_2861276_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_086028387.1\|2861320_2862091_-	phospholipase A	NA	NA	NA	NA
WP_012127146.1\|2862218_2863412_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_012128411.1\|2863957_2864677_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_021018038.1\|2864738_2865368_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012128413.1\|2865473_2865986_-	protein disulfide oxidoreductase	NA	NA	NA	NA
WP_012128414.1\|2865982_2868094_-	thioredoxin family protein	NA	NA	NA	NA
WP_048814324.1\|2868156_2868465_-	hypothetical protein	NA	NA	NA	NA
WP_012128416.1\|2868694_2869600_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012128418.1\|2871104_2872751_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_012128419.1\|2872750_2873320_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_012128420.1\|2873426_2873909_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_012128421.1\|2874057_2874297_+	hypothetical protein	NA	NA	NA	NA
WP_012128422.1\|2874422_2876270_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010645640.1\|2876693_2877395_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012128423.1\|2877478_2878654_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_005431104.1\|2878672_2878966_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_005431133.1\|2879106_2879391_-	integration host factor subunit beta	A0A0H3UZA0	Geobacillus_virus	3.2e-10	36.7
WP_005533588.1\|2879604_2881275_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_005533590.1\|2881385_2882066_-	(d)CMP kinase	NA	NA	NA	NA
WP_012128425.1\|2882276_2883338_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	3.3e-20	34.8
WP_012128427.1\|2883616_2884363_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_012128428.1\|2884494_2885187_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA
WP_012128429.1\|2885191_2886595_+	DNA polymerase Y family protein	NA	NA	NA	NA
WP_012128430.1\|2886622_2889697_+	error-prone DNA polymerase	A0A0K1Y9G6	Streptomyces_phage	9.2e-79	28.3
WP_012128431.1\|2889796_2890738_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	2.7e-29	30.2
WP_041853309.1\|2890967_2892185_-	ROK family protein	NA	NA	NA	NA
WP_011999494.1\|2892436_2892748_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2892744_2893098_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021018259.1\|2893158_2894703_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-70	34.2
WP_038863406.1\|2894892_2896335_+	pyruvate kinase	NA	NA	NA	NA
WP_012128435.1\|2896429_2896960_-	hypothetical protein	NA	NA	NA	NA
WP_080514143.1\|2896922_2897600_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012127501.1\|2897696_2898617_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-172	96.4
WP_012128437.1\|2898699_2898912_-	hypothetical protein	NA	NA	NA	NA
WP_012128438.1\|2898998_2900648_-	carboxylesterase family protein	M1PNU1	Moumouvirus	2.2e-18	28.2
WP_012128439.1\|2900733_2903319_-	hypothetical protein	NA	NA	NA	NA
WP_086028365.1\|2903873_2905407_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012128441.1\|2906363_2907098_-	hypothetical protein	NA	NA	NA	NA
WP_086028361.1\|2908704_2909828_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_021017813.1\|2910892_2912437_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|2912497_2912851_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|2912847_2913159_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012128444.1\|2913210_2914356_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_021018032.1\|2914374_2914467_-	YnhF family membrane protein	NA	NA	NA	NA
WP_021018031.1\|2914617_2915202_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_086028389.1\|2915227_2916023_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

2933980 : 3061675

104

Leptospira_phage(21.43%)

tRNA,transposase,integrase

attL 2980605:2980620|attR 3008266:3008345

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012126704.1\|2933980_2935006_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041853308.1\|2935255_2936200_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_012128463.1\|2936836_2939944_+	ribonuclease E	NA	NA	NA	NA
WP_005436634.1\|2940018_2941398_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	3.8e-48	26.9
WP_010645684.1\|2941784_2943344_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.9e-90	42.9
WP_012128464.1\|2943404_2943854_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_012128465.1\|2943971_2944577_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_012128466.1\|2944700_2946788_-	AsmA family protein	NA	NA	NA	NA
WP_005433235.1\|2946977_2947619_-	uridine kinase	A0A1V0SAA3	Catovirus	4.6e-33	39.3
WP_041853307.1\|2947800_2948877_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_021018027.1\|2949034_2951095_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	7.6e-61	30.5
WP_012128470.1\|2951308_2952115_+	hypothetical protein	NA	NA	NA	NA
WP_005531443.1\|2952199_2953039_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_012128471.1\|2953678_2955265_+	Na(+)/H(+) antiporter NhaB	NA	NA	NA	NA
WP_012128472.1\|2955350_2955887_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_012128473.1\|2955963_2956572_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_012128474.1\|2957008_2957968_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_012128475.1\|2958056_2959517_-	diguanylate cyclase	NA	NA	NA	NA
WP_005531430.1\|2960463_2961258_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_021018026.1\|2961254_2962190_-	ABC transporter permease	NA	NA	NA	NA
WP_041853306.1\|2962245_2963211_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012128481.1\|2963520_2963973_-	DUF412 domain-containing protein	NA	NA	NA	NA
WP_012128482.1\|2964319_2965516_+	acetate kinase	NA	NA	NA	NA
WP_005433245.1\|2965654_2967820_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_012128484.1\|2967940_2968885_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_041853305.1\|2969095_2970088_-	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	G9BWD6	Planktothrix_phage	5.3e-20	32.5
WP_010449362.1\|2970084_2971056_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-14	31.2
WP_005531413.1\|2971086_2971989_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_012128487.1\|2972004_2972925_-	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_041853304.1\|2973031_2974666_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012128489.1\|2975227_2975683_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_012128490.1\|2975684_2975942_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_005433216.1\|2975941_2976418_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_005433210.1\|2976444_2976957_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
WP_005531402.1\|2977056_2978046_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_012128491.1\|2978343_2979249_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.2e-26	31.3
WP_021018019.1\|2979267_2980812_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
2980605:2980620	attL	NA	NA	NA	NA
WP_011998779.1\|2980872_2981226_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
2980605:2980620	attL	NA	NA	NA	NA
WP_012128493.1\|2981727_2982072_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_012128494.1\|2982068_2983472_-	sigma-54-dependent Fis family transcriptional regulator	Q6XM27	Feldmannia_irregularis_virus	7.3e-07	27.7
WP_005531398.1\|2983814_2985845_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_012128495.1\|2986851_2989149_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	7.4e-158	40.1
WP_012128496.1\|2989461_2990040_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_012128497.1\|2990043_2990637_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_012128498.1\|2990645_2993384_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_005425207.1\|2993383_2994430_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_012128500.1\|2994437_2995076_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_012128501.1\|2995068_2995761_+	electron transport complex subunit E	NA	NA	NA	NA
WP_012128502.1\|2995840_2996494_+	endonuclease III	NA	NA	NA	NA
WP_012128503.1\|2996648_2997209_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012128504.1\|2997161_2997491_-	hypothetical protein	NA	NA	NA	NA
WP_048814159.1\|2997494_2998295_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	7.8e-46	37.1
WP_012128506.1\|2998257_2999565_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_041853317.1\|2999612_3000923_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012128508.1\|3001717_3002161_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012128510.1\|3002475_3004020_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.9
WP_012128511.1\|3004079_3004322_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.5e-10	49.2
WP_021018023.1\|3004452_3004743_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127146.1\|3006956_3008150_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_021018022.1\|3008788_3010003_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-20	29.8
3008266:3008345	attR	NA	NA	NA	NA
WP_012128517.1\|3010748_3012221_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.0e-131	50.4
3008266:3008345	attR	NA	NA	NA	NA
WP_021018021.1\|3012805_3013222_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_005536418.1\|3013359_3013794_+	DUF2753 domain-containing protein	NA	NA	NA	NA
WP_012128519.1\|3013915_3014797_-	OmpA family protein	NA	NA	NA	NA
WP_005439693.1\|3015103_3015748_+	ribonuclease T	L0N6K9	Acaryochloris_phage	8.3e-06	24.7
WP_041853303.1\|3015776_3017102_+	Na+/H+ antiporter family protein	NA	NA	NA	NA
WP_041853302.1\|3017191_3017821_-	DsbA family protein	NA	NA	NA	NA
WP_005430724.1\|3018829_3019012_+	TraY domain-containing protein	NA	NA	NA	NA
WP_041853301.1\|3019408_3020011_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_012128526.1\|3020025_3020343_+	hypothetical protein	NA	NA	NA	NA
WP_012128527.1\|3020345_3020717_+	hypothetical protein	NA	NA	NA	NA
WP_012128529.1\|3021325_3022195_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.0e-160	96.1
WP_021018019.1\|3022213_3023758_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_012126950.1\|3023818_3024172_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.6e-14	43.5
WP_011999494.1\|3024168_3024480_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012128530.1\|3024774_3026337_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.5e-21	41.7
WP_041853483.1\|3026561_3026768_-	hypothetical protein	NA	NA	NA	NA
WP_012128532.1\|3026837_3027674_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012128533.1\|3027775_3028669_-	hypothetical protein	NA	NA	NA	NA
WP_012128534.1\|3028795_3029659_-	sigma-70 family RNA polymerase sigma factor	M4SMP8	Cyanophage	4.3e-26	30.8
WP_012128536.1\|3030292_3031213_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-171	96.1
WP_009707292.1\|3031430_3031766_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_005536241.1\|3032009_3032594_+	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	4.2e-41	43.7
WP_012128538.1\|3032750_3033254_+	hypothetical protein	NA	NA	NA	NA
WP_012128539.1\|3033388_3034132_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_041853639.1\|3034219_3035530_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012128541.1\|3036168_3038871_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_005433169.1\|3039520_3040159_+	YchE family NAAT transporter	NA	NA	NA	NA
WP_012128542.1\|3040221_3041070_+	ion transporter	NA	NA	NA	NA
WP_010644047.1\|3041409_3042540_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_005439709.1\|3042977_3044414_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_041853300.1\|3044515_3045679_-	hypothetical protein	NA	NA	NA	NA
WP_080514144.1\|3045790_3047071_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_011999187.1\|3047245_3048571_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005432897.1\|3048688_3049687_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	1.1e-105	58.3
WP_005432983.1\|3049772_3050000_+	YejL family protein	NA	NA	NA	NA
WP_012128546.1\|3050022_3051831_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_048814332.1\|3052382_3053693_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012127098.1\|3054284_3055607_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012128548.1\|3055734_3056730_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_012128549.1\|3056729_3057905_-	DUF898 domain-containing protein	NA	NA	NA	NA
WP_012128550.1\|3058408_3058708_-	hypothetical protein	NA	NA	NA	NA
WP_012128551.1\|3058676_3059600_-	histone deacetylase	A0A2K9L2T7	Tupanvirus	1.4e-14	27.8
WP_012128553.1\|3060577_3061675_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	4.6e-65	38.8

DBSCAN-SWA_20

3557434 : 3576151

uncultured_Mediterranean_phage(18.18%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012128902.1\|3557434_3560032_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.2e-76	37.5
WP_012128903.1\|3560174_3560642_-	recombination regulator RecX	NA	NA	NA	NA
WP_005425359.1\|3560848_3561892_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.1e-111	60.7
WP_012128905.1\|3562092_3562575_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.4e-26	47.5
WP_012128906.1\|3562660_3565222_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.4e-34	23.2
WP_041853460.1\|3565287_3566610_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005425361.1\|3566746_3567733_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_012128908.1\|3567813_3568737_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	2.4e-06	36.4
WP_012128909.1\|3568751_3569378_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	53.9
WP_012128910.1\|3569377_3570154_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
WP_012128911.1\|3570153_3571197_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005425365.1\|3571242_3571719_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_041853277.1\|3571733_3572444_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.4e-06	23.1
WP_005452106.1\|3572445_3572727_-	cell division protein FtsB	NA	NA	NA	NA
WP_005425372.1\|3573130_3574432_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
WP_005531665.1\|3574510_3576151_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_009784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009784_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009784_1

1398167-1398375

Unclear

Consensus_repeat	Method
AGTAAACTGCCGAGTAGGTAGCTGATAAT	CRT
GTAAACTGCCGAGTAGGTAGCTGATAAT	CRISPRCasFinder

3 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NC_009784_1

>merge|NC_009784|1|1398167-1398375|CRT,CRISPRCasFinder
AGTAAACTGCCGAGTAGGTAGCTGATAATGGTTGCGACCGCTTGCGCTCATCGCGGTATGAGTAAACTGCCGAGTAGGTAGCTGATAATAAATAGGTCGTGGCTTGCATCCTTTCGTTATCGTAAACTGCCGAGTAGGTAGCTGATAATCAACGGTGTAGTGGGTGCAATCAAGACTCAAATTGAACTGCCGAGTAGTTAGAGTACATT

>NC_009784|1|1|1398167-1398375|CRT
AGTAAACTGCCGAGTAGGTAGCTGATAAT	GGTTGCGACCGCTTGCGCTCATCGCGGTATG
AGTAAACTGCCGAGTAGGTAGCTGATAAT	AAATAGGTCGTGGCTTGCATCCTTTCGTTAT
CGTAAACTGCCGAGTAGGTAGCTGATAAT	CAACGGTGTAGTGGGTGCAATCAAGACTCAA
ATTGAACTGCCGAGTAGTTAGAGTACATT

>NC_009784|1|1|1398168-1398375|CRISPRCasFinder
GTAAACTGCCGAGTAGGTAGCTGATAAT	GGTTGCGACCGCTTGCGCTCATCGCGGTATGA
GTAAACTGCCGAGTAGGTAGCTGATAAT	AAATAGGTCGTGGCTTGCATCCTTTCGTTATC
GTAAACTGCCGAGTAGGTAGCTGATAAT	CAACGGTGTAGTGGGTGCAATCAAGACTCAAA
TTGAACTGCCGAGTAGTTAGAGTACATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009784.1\|WP_012129693.1\|1393299_1394484_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_009784.1\|WP_012129698.1\|1398831_1399380_+\|hypothetical-protein	unknown	unknown	unknown
NC_009784.1\|WP_012129686.1\|1381454_1383464_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NC_009784.1\|WP_012129705.1\|1405077_1405698_-\|TnsA-endonuclease-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378037
NC_009784.1\|WP_012129690.1\|1387254_1388337_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223893
NC_009784.1\|WP_012129697.1\|1398533_1398740_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_009784.1\|WP_012129703.1\|1402961_1404155_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009784.1\|WP_012129701.1\|1401860_1402862_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_009784.1\|WP_005425904.1\|1408982_1409423_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|366402
NC_009784.1\|WP_021018164.1\|1397439_1398039_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187805
NC_009784.1\|WP_012129699.1\|1399373_1400768_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NC_009784.1\|WP_012129708.1\|1407333_1408872_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|182554
NC_009784.1\|WP_012129700.1\|1400858_1401839_-\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|377533
NC_009784.1\|WP_012129691.1\|1388336_1393094_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143586
NC_009784.1\|WP_012129706.1\|1405842_1406886_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235343
NC_009784.1\|WP_012129695.1\|1396378_1397437_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
NC_009784.1\|WP_011999348.1\|1379668_1380862_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009784.1\|WP_012129685.1\|1380957_1381449_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|350690
NC_009784.1\|WP_012127146.1\|1385415_1386609_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009784.1\|WP_012129694.1\|1394484_1396407_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867

Protein	Function_ID	Function_description	E-value
NC_009784.1\|WP_012129693.1\|1393299_1394484_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.23804e-16
NC_009784.1\|WP_012129686.1\|1381454_1383464_-\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	2.0514e-36
NC_009784.1\|WP_012129705.1\|1405077_1405698_-\|TnsA-endonuclease-N-terminal-domain-containing-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	3.34865e-15
NC_009784.1\|WP_012129690.1\|1387254_1388337_+\|hypothetical-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	0.0054241
NC_009784.1\|WP_012129697.1\|1398533_1398740_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.17381e-13
NC_009784.1\|WP_012129703.1\|1402961_1404155_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000718967
NC_009784.1\|WP_012129701.1\|1401860_1402862_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.47115e-08
NC_009784.1\|WP_005425904.1\|1408982_1409423_-\|PAS-domain-containing-protein	gnl\|CDD\|366402	pfam00989, PAS, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	2.48848e-05
NC_009784.1\|WP_021018164.1\|1397439_1398039_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187805	cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.06356e-37
NC_009784.1\|WP_012129699.1\|1399373_1400768_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.0283e-31
NC_009784.1\|WP_012129708.1\|1407333_1408872_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	4.62151e-160
NC_009784.1\|WP_012129700.1\|1400858_1401839_-\|TniB-family-NTP-binding-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	3.35019e-19
NC_009784.1\|WP_012129691.1\|1388336_1393094_+\|hypothetical-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.65072e-10
NC_009784.1\|WP_012129706.1\|1405842_1406886_-\|GMP-reductase	gnl\|CDD\|235343	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NC_009784.1\|WP_012129695.1\|1396378_1397437_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	2.41041e-105
NC_009784.1\|WP_011999348.1\|1379668_1380862_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000328644
NC_009784.1\|WP_012129685.1\|1380957_1381449_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.04045e-11
NC_009784.1\|WP_012127146.1\|1385415_1386609_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000305139
NC_009784.1\|WP_012129694.1\|1394484_1396407_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.32417e-72

>NC_009784.1|WP_021018164.1|1397439_1398039_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNWYYRTVTFLPERCNNESLAAKCLRVLHGFNYRYETRNTGVSFPLWCNETVGKKVSFVSTNKMELDLLLKQEYFVQMEKLQYFSISKTVLVPEGCRYVSFKRCQSIDKATTAGHERKIRRLEKRAKSRGEPFDPSSFTPKEHTVLSHYHSLEEFSSKTNNNFRLNVRMFSEQHNEGDSVFSSYGLSNSEHFLQPVPLI
>NC_009784.1|WP_012129695.1|1396378_1397437_+|type-I-F-CRISPR-associated-protein-Csy3
MKLPSSLAYERSIDPSDVCFFVVWPDDKKTPLTYTSRTLLGQMETASLAYDTSGQPKKSVTAEALAQGNPHQVDFCHVPYGASHVECCFSVSFSSELRKPYKCNSSSVKQTLVKLVGLYEKKIGWTELATRYLINICDGTWLWKNTRKAYCWNIELTPWPWNGENVKFEDIRNNYISRKDFENHKDWSGMTEMIKTAFSSSNGLAILEVKATVHLPTNAMVRPSQAFTEKENGSKNKSKSQNSRVFQHTVIDGERSPILGAFKTGAAIATIDDWYPEATETLRVGRFGVHREDVTCYRHPSTGKDLFSLLQKADHYIEVLSSNEAPDQEAINDMHFVMANLIKGGLFQHKGD
>NC_009784.1|WP_012129694.1|1394484_1396407_+|type-I-F-CRISPR-associated-protein-Csy2
MQTLKELIASNPDDLKATLKRVFRPLTPHIAIDGKELDALTILVNLTDKTDDQKDLLDRAKCKQKLRDEKWWASCLNGVNYRQSHNPKFPDIRSEGIIRTEALSELPSFLLSSSKIPPYHWSYAHDSKYVNKSAFLTNEFCWNGGISCLAELLRDVDHPLWKTLAKLGCYQKTRKAIAKQLASIAHMTISVPLAPNYLTQISLPDSNTSYISLSPVTSLSMQSHFYQGLQDEYLHTATTRYSRSTNMGVTAMTCDGAFRMLKSNTKISTTPHHRLNSKRSWLTSEHVQSLTKYQRLNKRLMPENARKALRRKCKIEVLNLVNAWLAMQDCTLDSTILVQHLNHDLSCIGATKRFAYDPAMTKLFTELLKRALSNSINNGTQHTNGSYLVLPNIRVCGATALSSPVTVGVPSLTAFFGYVHAFERKLNSIYTAFRIESFAICIHQLHVEKRGLTAEFVAKGNGTISAPATHDDWQCDAVFSLILNTNFAQRIDQKTLITALPKRLARGSAKIAIDDFKYLNSFTTIETAIQSLPIKVGRWISLHTQPNNNLGDLLAAIKEDSQLMASCVGYHLLEEPKDKPNSLRGYKHAFAESIVGLIKSITFGSTTDANTILWSLNSHKNYLVVQPRSISDETTLESSL
>NC_009784.1|WP_012129693.1|1393299_1394484_+|TniQ-family-protein
MFLQRPKPYSDESLESFFIRVANKNGYSDVHRFLEATKRFLQDIDHTGYQTFPTDIAKINPCSAKDSSGARTASLLKLAQLTFNEPTELLGLAINRTNLKYSPSTSAVIRGSEVFPRSLLRTRSIPCCPLCLQENGYASYLWHLEGYDHCHIHNAPLITSCSCGNEFDYRVSELKGVCSNCKEPIATKSRGREPKQAYNVANWLAGNGSEELPNLPKSYRWGLIHWWTHLNDDKFDHGSFTHFFANWPSAFHSMIDAEIEFNLEHAFVNISELRLKDLLGRLFFSSIRLPERNLRHNIILSELLSHLEKRLWQDKGLIANLKMNALEATVLLNCSLDQIASIVAQRILKPNRRTKPNSPLEHTDYLFHFGDIFCLWLAEFQTDEFNRSFYVSRW
>NC_009784.1|WP_012129691.1|1388336_1393094_+|hypothetical-protein
MGFQFDQEVYLFGAYFERKETDEGNFFPNWHQESDLTEKTELDGKIRPIPQTPIMVNAIAGMDSQLWGTTLEGKIVELGMGEPLSKSAAQPLNGEKVDGEETVTEDKENFMILHPGARKEDIQKDIDYELSFPPISWLSQMIAPPDYKDGGASDVATLAENIKHFATTIDGVVDGKRQTGVKFKLTKIKPSQLAAKYEEETDGKLSEEQKAYNSWYDKQQKKPYLQGFIVPRVHTCAVLFTDPFYAGAEVTLVQPLKQIKPGESESAGETIIATQTVIQRKPRWDDRIENNVLPSALLHLDPIDAKDGFYLIRVAFREQEWLEFEKELYQRLKLPESVIRANVKKSKAFIGNTDEVQDVYTYELHERLIFKETAGIGKMACVCGDMITLEETLIQQFPSQLPEYSVYASKGVTYHNQSKPGLASLSLSSAIMKTYDSLSSDFLSIEGAKVYGTFGDMAKTIGQALWENAEAGNLPDFIMSGLSLKAAFAACKDAQQTIDISKTLVALPLSVKDYRKLILKKTVINIPYIKQAFKDNGQTKIFRGLGRLSKDFLSGTNQALPVIQLGLSAMETKEQYDKHIDALEDADQAHGSLKAYAQQYLSAIAYLRRSDEKERWETKATEVQGFLGNEAKIYTDAMGVVVRINFKFNSAEFENEVKALNSNYEELCKKLRNLLVENPDYQIALIGHGGPISSQEKNLIVSQRRIDTIKDRILNGTQGDERIKLERRLVTQAKGKAELLPKEGGYHDHGDRSDTADIAINRRVEVRLVIPDFSISLPPSRTGTLALNRAHQYWEGFKITAKEAQKEAFFSAIDVLATVALWTPASPIAAYYLAGSTAGKLLGAATDFYGDLFGDQTFKKLKDTYNTKSMLKTLSMINQELIVLYEEVDTKLEQKELKPSEIAGFLESQVNHDELLKRFLLRAYALNSLVELLAILSSMDGVLRSFDNLIEQYEVDLFIEQYVMSDNWSIPVNMGNTLALNWINRKKAFNSSLSHTVSSLAFDQGRQVHGSFNTGFPVQSQLYLNDKTADMIDINLAKKEGLKAFCNDFNLTKVELEEKDIGFSRLLVKEGNNWQPYVDWVREESGRKLRPQTRVMLQVILTGEGEHHSKSMFLREVSYSTEVIGFNTNCPAFDVLFTKKNAQELQDPDGAVAKYFEQQPQLQEEELELHSLEFEPTYTFGHVYIHGLKPLCPYVKGIDSLKALIKGQSVFEHVLDNDGFDQMEYTFSLAKHDLALGVRMVGTNNQFRLEYLTAKYGTSKASSPQKSHFDGQIEVLSQFEDTDFLIEDFVMSESSSARDNTPQVIGDQLTVLQGIEIDGQLKWGEDWTEQALASEFDWNKETSFAVCFALFGDELASQEYETMRLNWRELMMKLKLKDGPTIHSAMHYCGEMSIATHTTVVPSNNNYNGMQNEIVFKLAHDKTQSTHNHDDLAQSAIDFLQDNTAQYSQSLKSSDRKHVYIVRFKFTYVSPTGTLVDGMRPYGDIIAGKNLKPLTVTFESLQQSALNEGYPLPGIDVRLPPIKDYMDKPWTRILNEKEPSSISVRNHWGNLESPEQKREFVNKWITEQGLSLKAPQVELLQIKEI
>NC_009784.1|WP_012129690.1|1387254_1388337_+|hypothetical-protein
MKKLLSLCLAVLTLTACTDDGRTYVGEHNYYTMEPTEIAESPSSTYQAGKFPRYHVFRAKEWPREDLNDASSYDLPRVQFTWANLSERGVLEKGAPAYTDYEGRVKVWSMKTDGTDLRLVTDLPYEGRSRDIVRDKTSRSPNNRYVAMDAGTQVKVFDIKEQKMIDLPHKLHGPSGYIWAEDSSYLYYRTGQVGRVVYKWDVKTGQVEKTDIHISQTGLIKDGKRYKVTSVYTVVYDENTGEKLQSVRWGEGLKSWQSNADYTSISPEGTVSWGSNRSYGNFSVDITSNTVKPAIGAMQFAIGLNSKFALTNYNAMRMTVKNNQTKQSWKWRALSNNGTRDPAIVYNVSANNGDWFKEAK
>NC_009784.1|WP_012127146.1|1385415_1386609_-|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVIPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSACPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009784.1|WP_012129686.1|1381454_1383464_-|AAA-family-ATPase
MKLSKVRISNFQCFGKLTEIEFEEDLTALIGLNGSGKTSTLHALSRMFGVTESSRKVLVDDFHCPSSNTFRAEKLFIEAWFEFPELQGGDDLTAVASTFNQMCFSSEGNGKTEGGVKTLLRVRLEAELTVDDVSPEGIVNETVYFILSDKDDFDASEKRVLRRSDRNNIQVHYIPASRNPFKEISSSTKILLGRLLDAIQWSKGPEGELQKAVEYTEKASDEISKNAAVSLIQGHLENSWDQMYAGDLFSKAKLNFLPLQSEDLLKTISLSFESASGAVASMERLSDGQRSLLHISIIQAVHEMESKTLQDMENRRHFDQKRLKRPIYTMLALEEPENHLAPHYLGRIVKSMVKLAKKTNAQVAVTTHSPSLVGRIEPKQIRHFRQEKQSHTTIVSKIDLPSPEDEQYKFVSGAVKAYPEIYFARLVVLGEGESEQIVIPKLLSHCGVDIDDSFISVAPLGGRHVNHFWRLLEGLNIPYVTLLDLDYGRHGGGWGRVKYVLEQQELLGKEPEIRPHNNFDDPLCNPMTSTYEINDEDKTALEILGEQGVFFSTPLDLDYSMQVAFPEQYNVRHAGERGPRPKAWDDLKPVVLKSSYSKAIAESFYSAEKDELPFNWYSYRFLGSKGKPVSHIRALEEIDFESGENKDKIPESFQEMIKHIIREVSSLPE
>NC_009784.1|WP_012129685.1|1380957_1381449_-|UvrD-helicase-domain-containing-protein
MNEAWVPKDNLVFDDKSLEIIHCNANLAVWAGPGAGKTELLAQKACFLLETERCEWPFSILSISRKRASASNLKERVQMRSGDELSERFHSFTIEAFTKSIVDRFMCVLPKHRQPSPDYQVTNGGSNFPKSLSFDHITSIALEICNTSSDLMASLRVLRAPHN
>NC_009784.1|WP_011999348.1|1379668_1380862_-|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVIPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSASPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009784.1|WP_012129697.1|1398533_1398740_-|helix-turn-helix-transcriptional-regulator
MNDLAKAFGNNLRLMRKSKSISQDKLALLADIDRSYIGRIERGEVNITLEKAYQLARVLGCDVIDLLP
>NC_009784.1|WP_012129698.1|1398831_1399380_+|hypothetical-protein
MTKKVQVNRDIYEIISLPSVSEFRVTQIRNLITKKSGHYSNKNTARLYVARQLESLEKQGVLKSQGLRHNKTYRKTDMFADANFILKDKRVSKKRPDNSGPLNSASVKSMLMDEKKDIESNLTIALAEINEYKLLMSRSKSLHNLLLSSHLDAVNKAAVLVAKLNVWTDAIKLVTKQDVKSC
>NC_009784.1|WP_012129699.1|1399373_1400768_+|DEAD/DEAH-box-helicase-family-protein
MLRKWQAECISLALSKYRRGHAHFLAQATPGAGKTIMAATLAKQMFDSREIDFVLCFSPSKAVADGIKSTFSQLLECSFNGALGETGCSVTYQSLRFVTKRFWDTLSKYKVLCIFDEIHHCGGDNELNSNSWGYQLLSDVQHAATFTLALTGTPWRSDKTPITLASYTDPEGKIVCDYQYSLAQAVQDGVCRKPKIALIDCEEVKVTESEGLRSYNTIDELLNEGDVTYALILKDQQALLHLIGEAVSRLISIQAESPNAGGLIVASSIQEANKIASILTHSYAQSSVVVSYRDTSSHEKIKEFKETHSKNWIVSVGMVSEGTDIPRLQVCCYLTKIKTELYFRQVLGRILRVTESPNQEAWLYTFAESNMIRCAEEIETDIPDTCLYLNYECPDSQRSRVDESNKTQALDAQLLPASVAEISFNWNDDLSASEPPNGKNSDLFESSIQLARFNQRVIEAFRGV
>NC_009784.1|WP_012129700.1|1400858_1401839_-|TniB-family-NTP-binding-protein
MECQKVEITANKVKQIFIQNPQITYIIDDISDCREFSDGIHEPDCMIVVGDTGAGKTTIIDKYLAKNPRSETNDGSIIPILSTSLPPNATPITASEQLLSDLGDPLAFSRGNDPVKIAKEMSDLMKLCGVELIIIDEFQHMIDRKNKQILHSAADWLKMLIVGSKIPVVLFGMPYSVLILEANNQLAGRFELQHTLEPFRLNNKENRILYKTFLAMLDEALPFHESSDLASPDMMKRIYAFSQGNLRRIRKLINRSSRLALRDNSNKILLKHFAKAAPKVSRAACEKQNPFRVNVNELTIKQPPKDIGWENYLSQQEKDISPRDLF
>NC_009784.1|WP_012129701.1|1401860_1402862_-|DDE-type-integrase/transposase/recombinase
MWGALRVWPCYGLPEHLIVDNGAEFNSLDFKIACKELKIKVKKNPTKKPWLKGSVERYFRTINNRLLSRIPGKSFTNIFERKDYDPLKNAVIDSLLLQEMIHIWIVDMYQNGKNGLENNIPNLSWVDAVNSSIPPRPFKGSREELKFNLGKNREVALDRNGVRLGTTVRYSSDRLAKYFGEATCKDMKGVRVRIKYDPSCLGRVYVLDEKKEEFFAVEAIDADYAYSVSEWLHKTCCNYARRYIRKNYNHRDVVEAWRKILEIIDKAFDKTGQNQTRNSLGTITTSRVQRVKEHTERASSVAKTQQQDKSIKSELDDEFDWDIEVNTKGWSIE
>NC_009784.1|WP_012129703.1|1402961_1404155_+|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVVPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSASPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009784.1|WP_012129705.1|1405077_1405698_-|TnsA-endonuclease-N-terminal-domain-containing-protein
MKKRILRNSSVKNISRFVSLKTDSIHTVESDLEFDACFHFEFSAKILTFEAQPLGFEYHLDGKRRKYTPDFLVTYNDTYQPFYEIKPKRITETEEFKETFSVKKEQALSMGNDLKVLTEDDIQIYPLLDNLKIIHRYACDDRLNSLQHQILGLLRKYGELRIEQIVKYSSVHSSISLPALYDLIARQLLKIDMHQPIDWQTPIWSS
>NC_009784.1|WP_012129706.1|1405842_1406886_-|GMP-reductase
MRIEQELKLGFKDVLFRPKRSTLKSRSQVNLTRDFTFKHSGRQWSGVPVIAANMDSVGSFAMAKALAEHGVMTAVHKHYTVEDWAEFANTADKATLNNVMVSTGTSEADFQKTKDIMAISDEFIFICIDIANGYSEHLVEYVQRVRAAFPDKVISAGNVVTGDMCEELILAGADIVKVGIGPGSVCTTRVKTGVGYPQLSAIIECGDAAHGLGGMIIGDGGCSCAGDVAKAFGGGADFVMLGGMLAGHEESGGEVIEQDGKQFMKFYGMSSKSAMDKHSGGVAGYRAAEGKTVLLPFRGSVHGTIQDILGGVRSTCTYVGAAKLKELTKRTTFIRVQEQENNVFGKE
>NC_009784.1|WP_012129708.1|1407333_1408872_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MDFNLALKLYTAEQVRNGEVIAAQMAGVSMYSLMQRAGMAVYEQFLHLYPKARTVLVVCGKGNNGGDGYVFATLAKQAQLNVRVFQLGDTTALKGDALRAFEDWQTIDGENSSWSDWHTALLEADVIIDAMLGTGLSGEVRHEYRRYIDQVNQIHCPVISIDIPSGLSADTGAVLGDAIQADHTVTFIGVKQGLCTGQARDYVGELHFSGLGVNVEFESIEEESALGIDHRIIKRLLPKRKATAHKGNNGKLLCIGGNQGMSGAIRLCASAAARTGAGLTAALTHPSSLLPLQVGAPEVMSQAITFDELKEVDNALIKRTRWADTLAFGPGFGEDEWAHQAYQLLSQQHKPKVVDADGLNILAMLSQRNDVVVLRDEQRVMTPHPGEAARLLNVSTKEIEQDRFAAARQLHERYGGVVVLKGAGTLIYDGVRMYICLAGNPGMASGGMGDVLSGVIAALLAKGLPIAVAARLGVMLHSHAADINVQQKGEIGLLASDVIESLRDAINLKNDD
>NC_009784.1|WP_005425904.1|1408982_1409423_-|PAS-domain-containing-protein
MLNLPAEFEQFHWMVDMVQNVDMGLVVIDKDYNVQVWNGFMTHHSGLQSHEAIGRSIFDIFPEIPQEWFKLKTKPVYDLGCRSFITWRQRPYLFRCRNVRPVTQQAEFMYQNVTLNPMRTPTGKINSLFLSIQDATAEALMSQQQT

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Crispr_ID: NC_009784_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009784_2

1605624-1605706

Orphan

Consensus_repeat	Method
GCTGACCGTTAACGTGTCGTCACCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009784_2

>merge|NC_009784|2|1605624-1605706|CRISPRCasFinder
GCTGACCGTTAACGTGTCGTCACCTTCACCGCCATCCAGCGAGTTCGACCCGCGTCCGCTGACCGTTAACGTGTCGTTACCTT

>NC_009784|2|2|1605624-1605706|CRISPRCasFinder
GCTGACCGTTAACGTGTCGTCACCTT	CACCGCCATCCAGCGAGTTCGACCCGCGTCC
GCTGACCGTTAACGTGTCGTTACCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009784.1\|WP_012129900.1\|1622511_1623306_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_009784.1\|WP_012129888.1\|1608472_1608928_-\|hypothetical-protein	unknown	unknown	unknown
NC_009784.1\|WP_011999348.1\|1616075_1617269_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_009784.1\|WP_157722666.1\|1598098_1600708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NC_009784.1\|WP_012129877.1\|1591850_1592258_+\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182
NC_009784.1\|WP_012129876.1\|1591083_1591611_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009784.1\|WP_012129880.1\|1595504_1597037_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_009784.1\|WP_041853608.1\|1615396_1615963_+\|reverse-transcriptase-N-terminal-domain-containing-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_009784.1\|WP_012129898.1\|1619550_1621035_+\|DUF1800-family-protein	unknown	unknown	gnl\|CDD\|378055
NC_009784.1\|WP_021017836.1\|1597446_1597758_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	unknown
NC_009784.1\|WP_012129878.1\|1592322_1592967_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319829
NC_009784.1\|WP_012127165.1\|1597096_1597450_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_009784.1\|WP_012129899.1\|1621040_1622387_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NC_009784.1\|WP_048814458.1\|1600647_1603506_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|225483
NC_009784.1\|WP_011998890.1\|1618124_1618322_-\|hypothetical-protein	unknown	unknown	unknown
NC_009784.1\|WP_021018133.1\|1603519_1604230_-\|hypothetical-protein	unknown	unknown	unknown
NC_009784.1\|WP_144080972.1\|1612359_1614411_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NC_009784.1\|WP_012129891.1\|1611001_1612375_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_009784.1\|WP_041853519.1\|1593223_1594429_+\|DUF3103-domain-containing-protein	unknown	unknown	gnl\|CDD\|371456
NC_009784.1\|WP_012129897.1\|1618392_1619112_-\|beta-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|187594

Protein	Function_ID	Function_description	E-value
NC_009784.1\|WP_012129900.1\|1622511_1623306_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.37392e-16
NC_009784.1\|WP_011999348.1\|1616075_1617269_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000328644
NC_009784.1\|WP_157722666.1\|1598098_1600708_-\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.74122e-19
NC_009784.1\|WP_012129877.1\|1591850_1592258_+\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	4.27015e-13
NC_009784.1\|WP_012129876.1\|1591083_1591611_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.6584e-11
NC_009784.1\|WP_012129880.1\|1595504_1597037_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.29983e-124
NC_009784.1\|WP_012129898.1\|1619550_1621035_+\|DUF1800-family-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	4.44209e-71
NC_009784.1\|WP_041853608.1\|1615396_1615963_+\|reverse-transcriptase-N-terminal-domain-containing-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.72467e-55
NC_009784.1\|WP_012129891.1\|1611001_1612375_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	9.37155e-117
NC_009784.1\|WP_012127165.1\|1597096_1597450_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.11823e-39
NC_009784.1\|WP_012129899.1\|1621040_1622387_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	1.23004e-32
NC_009784.1\|WP_048814458.1\|1600647_1603506_-\|calcium-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	3.88443e-27
NC_009784.1\|WP_144080972.1\|1612359_1614411_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_009784.1\|WP_012129878.1\|1592322_1592967_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.42549e-50
NC_009784.1\|WP_041853519.1\|1593223_1594429_+\|DUF3103-domain-containing-protein	gnl\|CDD\|371456	pfam11301, DUF3103, Protein of unknown function (DUF3103). This family of proteins with unknown function appear to be restricted to Proteobacteria.	0
NC_009784.1\|WP_012129897.1\|1618392_1619112_-\|beta-ketoacyl-ACP-reductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.05411e-109

>NC_009784.1|WP_021018133.1|1603519_1604230_-|hypothetical-protein
MNWIKCFTFLSLFACFNISSCELYLYNLERSNLIYAYGDDIFSEKHKLSGNFDDDLIVSLKYRYGLGLNKDLEKSSDILLSYSDSQIGNDKGDLGMKYYLLGTYNYSCKNPVKGLEYLKKSNEYGYVKSNFLYGYISYYGLREKITTEDYFSILKKGMQNADGYSIFQYIYLSFTTGEITGVTDWIDIIEKMNLFSTCDLYNFHKFGVGVGGLISDWESKKLIIRKLWPEYNLKCE
>NC_009784.1|WP_048814458.1|1600647_1603506_-|calcium-binding-protein
MSKKLDLVRDVISANQHTNDINKLDSELMSLCDDAMSNPTIDNLNKVRDKIEQRKETEQLRGTDAFGALGLLGELLDSFIGEMVDKGDAIQDHWEPAIFDDIEEYMQGDKARRNELKELCNKDGKHLQGPRLRELPKSPTAPGSPLILDLDGDGIETTDLESGVYFDHDGDGKRERSAFVGPDDGLLVLDVDGDGAITSGNELFGNNTKLGDGTFASNGFTALSQYDENGDGLIDSKDPIFSQLKVFRDLNQDGISQSEELRSLNHHGVTSLKVTYNDSPYVDENGNEHRQQSSYTKSDGRKNDLNDVWFQMEKSDFIYPEIDIPKDILKLPNINGIGSLPSLHYAMAKDGSGRLKSLIESYQAGTTDQSSAELLTEIMFTWAGVTGDYSPYYQSKIDARKIRTLEAFYGYKIDKPRGSGVQYTALFSGIFKNLSREIGLRLSGTESILFREVKWIQEEKTGNWYGDFSEVADKVIELVSKGTAGAWKETIHFFNTLKLSDDEYSTNQKNLYSYLFESAHSSTADNLPEGFDKLIHMSISQESRVGDEFDNDLFGSSSDDFVYGNKGDDSITVGAGNDFVYGGEGNDTLHGGTGNDRVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHLVIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIVTETCTAAVLTKLCLVRASSVTS
>NC_009784.1|WP_157722666.1|1598098_1600708_-|hypothetical-protein
MYGSSVDQIVFGEGIVRDELSLRREGNHLVIMVGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHLVIMIGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHLVIMIGGPDSGDSITIEEGYVNSQHQIEEIVLSDGSTVSPQSLPILSSAEADELRGGYFADVIDGREGDDRLYGEGGDDTLEGGQGDDVLDGGAGNDTLNAGAGNDTVTAGAGNDVVAGGLGNDTLHGGTGNDQVSGGEGDDHLTVAYSGSNTLDGGAGDDVLTVETPTSSGRYSSYYKTANNARNTLIGGAGNDRLVGGLGAERYEFNRGDGQDTIRDRDVYGSSVDQIVFGEGIVRDELSLRREGNHLVIMIGGPDSGDSITIEEGYVNSQYQIEEIVLSDGSTVSPFDLPDYVEPVIETDLLVQAMSAFDAQENVANNAVIDSVTSSMSPNVVVSGRSPL
>NC_009784.1|WP_021017836.1|1597446_1597758_-|IS66-family-insertion-sequence-hypothetical-protein
MGKRHTNQEWQTLIEQSESSSLSTLAFCKLNELNPSTFYAKRQQFKKANSSQGFLRAEVVEKTTKYQAQIATANMTLLINDVELSIPQGTPAAYLAELIGALS
>NC_009784.1|WP_012127165.1|1597096_1597450_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MKHMLSAPEIYLYRESVDFRKSINGLAAIIESDTDLPLGSGALFLFTNKQRDKIKVLYWDKTGFALWYKRLEKAKYKWPAKEQNEVFTLTQFELDRLLSGFTIIGHKPVKINDFTMT
>NC_009784.1|WP_012129880.1|1595504_1597037_-|IS66-family-transposase
MKKTPVINPESQDVAELQAMVKALMVSESQWKQERQSLLEQLKLAFDRQFAKRSEALKPYDESQGDLFNEVECEAAKEEEVEVVTTTTTTKKRGKRKPLPKTLPREVIELDLDDHEKQCACCQHSLHKIGEDRSEKLEFSPAVLKVLEYVRPKYACRQCEQTEDNSHIVQKPAPQSIIPKSFATESLLANIILGKYQYAMPLYRQESLFTQSGIELSRTTMARWVIQVSEKFKPLYAALKEHLLQQVVVQADETPLNVLKEDKKCYMWLYCSGADSPDAALPNVKNIALYDYQNSRARACPVAFLGDYSGYLQTDGYGAYDGLHHVTNVGCLAHARRKFMDAKKLQGKGKSGKADKALAKIQKLYGIESCLKGATVETRKAERQLHAKPILDELHDWMTSQQVLASSSLGKAIKYTLGQWPKLIRYIDDGHLSIDNNRAERAIKPLVIGRKNWLFSNTPNGADASAMLYSIVETAKANGLILYDYMVKCMKELAKAEPDIDALLPWNFKY
>NC_009784.1|WP_041853519.1|1593223_1594429_+|DUF3103-domain-containing-protein
MRPSFSISMALATTVVGFHSYADSINTTTSSLTSVHVAEQKQSLALQISASYADLESSLKAQITEKSLSMPIDKLNSAQPYSTFSSEMQKADLSYRKMKGINNFSDSVLEIRMADETMIDAWKDGKSPLFAFEPSGDDADWQYIEAYDVYGQVHELDVYQMPDVPVFVIDSDGAKELKAGLMAMQAELNQLGMTTQINADGKNSADNTQKQPLISKARHSISESEPEELNTTRLTKIRLAVDREPWISGKAEIYAIVTGVDASRLEPQIDLVEMPYLDYDKQTYYPNQTIIFWPRYRWGAADIILMEHDDGTNYKDLAKLLVKAAEEVLKMIPDPEVQGYVIIPQITSKIIELIPNNILVNDDDFVDVYYTLLQKTPYVDRPGAGGNAVASFTPVTILPTE
>NC_009784.1|WP_012129878.1|1592322_1592967_+|HAD-IA-family-hydrolase
MIECKKFIFDVDATLVDTQAVIDNIWKKWCETVGVSYVDMSQYIHGRKIEETLHCISPSYACDVQVEKVKSIALSEMTKAQAISNAHSFISNLSPNAWGIATSGPKKVATTSLLASGFDLPKVMIWAEDVLKGKPDPEPFIKAAHALNVIPSECVAFEDSPSGVLSAKRAGCFTVALLTSHREDELKDADLIVQGFGHLTVIKNHNGSYCLAAS
>NC_009784.1|WP_012129877.1|1591850_1592258_+|DUF2007-domain-containing-protein
MIVVARFSFPHEAHIAKANLESAGIQSFIADEHTVNTQWLYSNAIIGGVRLMVSEEDFEEATELLSCDFSESLETHSVVAGEKKDLCPHCGSSDLSAHTKGKRPAFLVFILLGFPLFFYKQGYKCNQCGEFSEQL
>NC_009784.1|WP_012129876.1|1591083_1591611_-|GNAT-family-N-acetyltransferase
MEITFRQINMDDDFELCVASRKDAYFCSFGHYDGFEDFISGYRERVLERLSTSGWFYIHIFVDGEFAGQLEFRSFSPEQDTGYVHLIYLKPNFRGLGLAPKVQEYIVRTLSQAGCLRAVLSVSRTNTRALAFYKRNGWEFARRNPKHDETDFYQLWIGHTVYVESGSNGLSGAKR
>NC_009784.1|WP_012129888.1|1608472_1608928_-|hypothetical-protein
MIILGIWFIVFVLSIKPLVSKSRQFYRTRTKNSSYGIKTIILSISAHIGFTYLIYTDVGESWLDWFLPLANIMFVVQVLLVLNLALDNYDVVDKARVRNDAIFGFSLAYLGAVAMLYYSVYINDVILKGICVTAASVGLAGRLITYRNRKV
>NC_009784.1|WP_012129891.1|1611001_1612375_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLIWSIVGRLDIHASAQGKVMVSSHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGANAESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATPAQITASQQHLQSEYQETQQMLERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEWLDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKAKERQRIQALRSPVDGVVQQLAIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVMAGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPVFPARIRLERDQILVDDTWVTLGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER
>NC_009784.1|WP_144080972.1|1612359_1614411_-|type-I-secretion-system-permease/ATPase
MPTEHPGGDLKGWLKKASGQTDGQLRLKRLSENTLTASHLPLAYQQHDGEFVVLARLSDDQALIQRHHEQTPQVISRTTLEEAWAGQVIQYHESGRQFDIRWFIPEFIRHRGLLGEILFFSLLLQMLALVLPLFFQVIMDKVLVHNALSTLDVLVVALVVVGLFEVILKGLREYLLAHTTTRIDIRLGTKLFKHLLGLPLLYFKNRHVGAIVTRVRELDSIRNLLTGAALTLLVDVSFTFVFLGVMVYLSAPLTALVIATLPLYALLAWATSEPLKRRIEHQFACGAKNTAFLTESLNGVETVKSLALEPRFERRWEGQTQELVAANFSRQSFQAQVSQCVTLLQKVTSVGVLWLGAQMVMSLELTIGQLIAFNMMVNHVSQPLAKLVELWQQFIQTRVAVDNLSEMLNLPAEQEMGEFQPNAPIQGHIEFQQVWFRYQPQLAPVLHGLSLTIKPGESIGLVGPSGSGKSTVTRLIQKLYLAEKGQVLIDGTPLNQWSAAALRQGIGVVLQENYLFHRTVRENIAIRQPTASFEAVVEAAKLAGAHEFIIKMPKGYDTLLAEGGASLSGGQKQRIAIARALMTQPRILIFDEATSALDEESQRIVNQNMAKIARGRTVITVAHRLSAVQGCDRIAVIEQGEVTELGNHQHLLAQQGCYARLWHIQQNKQVESVGEEVLPCSQS
>NC_009784.1|WP_041853608.1|1615396_1615963_+|reverse-transcriptase-N-terminal-domain-containing-protein
MMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWVLEGDIKA
>NC_009784.1|WP_011999348.1|1616075_1617269_+|IS4-family-transposase
MNLSTILNTFFLMSSFSAIKDKRRITAVLDCINALNEKDTLTLTGLGRGMKNTKTKVKHCIKRVCRLLGNPHLHRERTGVYAYITDFLLKNVKHPIIIVDWSPVNHVDKQILRATIPIGGRAFTLYEEVHPECKLGSLAVHKAFIRRLATMVPKGVIPIVTTDAGFKVPWFKPIEQQGWYWLGRVRGNSKLRVNDRWCSADEVFVQAQYKPQHLGTAELTKQHQYPCQVCLYRKKSKGRKAKNWSGSLQRNTVSLSHAKGEREPWLLVSNLPGETWFAERVVALYTQRMSIEEGFRDTKNERYGLALNFSGSASPKRIEILLMIGMLTQFALLVVGKVAYLKGYYKDFQANTIRTRRVLSYFFLGKELIGREAYSFSVKDLALAVGGLKAISAAEFR
>NC_009784.1|WP_011998890.1|1618124_1618322_-|hypothetical-protein
MSSRRHLLPSAVPLRTQRATFTALGSSLHEGTYWHPATYKAARAGSCQELRHCLFDFLFAKYSWY
>NC_009784.1|WP_012129897.1|1618392_1619112_-|beta-ketoacyl-ACP-reductase
MKAEKVAVVTGAARGIGQAICEQLLEDGFHVVGLDISPVEWSQSAQLSNYQVNLCDAAAVSEVVDSIVRQHGRIDALVNNAGITRDALLPDMLEQDWDSVIDVNLKAVFLLTQRVAPVMLEQGTGSIVSISSIVGTDGNIGQSNYGASKGGVISMSKGWAKELSRKGAQIRVNCVAPGFIATDMTKNLPEKVIQMMEGKTPLGRMGSVQDIANGVSFLTSDKSAYITGHVLKIDGGLVL
>NC_009784.1|WP_012129898.1|1619550_1621035_+|DUF1800-family-protein
MNQAYIDAARTLQQCTFGPSQRDINDLVQSGSIENWVAQQTLITPSSWLKHFEQDELNVPDLGQSLYYASSWTRMTVEGDDILRQRIAYTLSQLFVVSVKDPAFKAASKRRYMCNYFDGLLDNAFGNFRDVIRFVSKSPIMGEYLTFVNNVSNDLTAPDENYARELLQLFTLGPVKLRNNGEVRLDAEGNEVASYTQEDIEQLARVFTGWKFIDIRGNDKYSQPMEPRGEHDMGEKPILGKTFPGGVGAEEELEAVIEHLMNQNTLYTFVTKFFINKLVTSNPRAGYIRRVRRAFKRSDGDMQALIIAILTDKDALRSGSTVGKLRDPLSVFTHAMRALQVKRRDGVLMWPKQFNWYNRTLPLSAPSVFYYYQPDDAPNHPDFNGLVAPEFNVYQWHDIYQYGIQFRELVARFEEEAKDWYMDEVLFTRYLAFDDEGVVDYLNEHLFAYQMSEQARQCYLDYLAQCPSRQSKWRKEIKNLVMNALLSPEFITQG
>NC_009784.1|WP_012129899.1|1621040_1622387_+|DUF1501-domain-containing-protein
MNLTRRRFLQAGSAGVGVSALNLAAFPAFADSFNQCKNGYRAVVGIDLAGGNDGYNMLIPTAAPANSQYRALRGSLALDETSCIHLDAVNDDAKLALNPAMAALKTYWDNANLVPVVNLGPLTQRVNNVIYGESTRPAHLFSHSHQSTMVQSHATKSLSKEGFGAKTSTELGTMLRSLNELSPMFDIGGTQVWTNCIEAQSNSVGSQPPSDIFNDQRSRDLFDQLQNTGSYGNVFQSHYAGIAVDSTRMYQEFSAILNAEITEVFPETRIGNQLKAVFKLLLHKDQFQHPAQYFSCKLGGFDTHSAQISRQTGLLQELAEAMAAFQLALENNGLFDQVTTFTHSEFGRTLIPNGTDGTDHGWASHALVMGGGVAGKAIVGEYPDLSETSPYLLSRGRVIPTISSDQLHASLMAWLGLSETGINQLFPALDNTLTDSIQPQTLPLFKSC
>NC_009784.1|WP_012129900.1|1622511_1623306_-|metal-ABC-transporter-permease
MTEYAWLLPAVLCGLIALVGNVVLGQQVLKRQIIFIDLAVAQVAALGAALSHYWLNQYALFSGSFFGEMVGPWVMSLLLCGLNALMEKRYQQHLEPMIGSLFVVSASLAILLVSKDPHGADFIQGILNGQLLWSTWDDVWPLALITAAMLLLVWLKPAFMQGSGFYLIFAILMPITVKLTGIYLEFALLVIPALCAAALKGTRFFIASISIGFVGILSGISASARYDLPSGASIVITLFIAGMLFNLLVQPWLHKSPSINEETA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NC_009784.1	1604999-1605029	1	0.968

1. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to position: 1604999-1605029, mismatch: 1, identity: 0.968

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
caccgccatccagcgagtttgacccgcgtcc	Protospacer
*******************.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009784_1	1.2\|1398256\|31\|NC_009784\|CRT	1398256-1398286	31	NZ_CP053818	Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence	78825-78855	1	0.968
NC_009784_1	1.5\|1398256\|32\|NC_009784\|CRISPRCasFinder	1398256-1398287	32	NZ_CP053818	Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence	78825-78856	1	0.969
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	49324-49354	1	0.968
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	49974-50004	1	0.968
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	50679-50709	1	0.968
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	51330-51360	1	0.968
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	48673-48703	2	0.935
NC_009784_2	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	NZ_CP053542	Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence	51981-52011	2	0.935
NC_009784_1	1.1\|1398196\|31\|NC_009784\|CRT	1398196-1398226	31	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	108990-109020	5	0.839
NC_009784_1	1.4\|1398196\|32\|NC_009784\|CRISPRCasFinder	1398196-1398227	32	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	108989-109020	6	0.812

1. spacer 1.2|1398256|31|NC_009784|CRT matches to NZ_CP053818 (Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence) position: , mismatch: 1, identity: 0.968

aaataggtcgtggcttgcatcctttcgttat	CRISPR spacer
aaatgggtcgtggcttgcatcctttcgttat	Protospacer
****.**************************

2. spacer 1.5|1398256|32|NC_009784|CRISPRCasFinder matches to NZ_CP053818 (Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence) position: , mismatch: 1, identity: 0.969

aaataggtcgtggcttgcatcctttcgttatc	CRISPR spacer
aaatgggtcgtggcttgcatcctttcgttatc	Protospacer
****.***************************

3. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagttcgacccgcgtcc	Protospacer
*.*****************************

4. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagttcgacccgcgtcc	Protospacer
*.*****************************

5. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagttcgacccgcgtcc	Protospacer
*.*****************************

6. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagttcgacccgcgtcc	Protospacer
*.*****************************

7. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagtttgacccgcgtcc	Protospacer
*.*****************.***********

8. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
cgccgccatccagcgagtttgacccgcgtcc	Protospacer
*.*****************.***********

9. spacer 1.1|1398196|31|NC_009784|CRT matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

ggttgcgaccgcttgcgctcatcgcggtatg	CRISPR spacer
tatcgcgaccgcttgcgcgcatcgcgctatg	Protospacer
 .*.************** ******* ****

10. spacer 1.4|1398196|32|NC_009784|CRISPRCasFinder matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

ggttgcgaccgcttgcgctcatcgcggtatga	CRISPR spacer
tatcgcgaccgcttgcgcgcatcgcgctatgc	Protospacer
 .*.************** ******* ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4287 : 65454

Escherichia_phage(36.36%)

transposase,integrase

attL 29886:29900|attR 66202:66216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999046.1\|4287_5217_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.4e-70	50.0
WP_086028385.1\|6765_8300_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_157722659.1\|8492_8963_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_021018346.1\|10172_10718_-	cytochrome b	NA	NA	NA	NA
WP_011999056.1\|10869_12333_-	N-acetylglucosamine-binding protein GbpA	NA	NA	NA	NA
WP_011999057.1\|12544_13465_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.1e-168	94.8
WP_144080964.1\|13567_13783_+	hypothetical protein	NA	NA	NA	NA
WP_011999060.1\|13883_14366_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011999061.1\|14486_15086_+	LysE family translocator	NA	NA	NA	NA
WP_011999064.1\|16228_17314_-	CZB domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-11	59.0
WP_005533925.1\|17580_18276_-	hypothetical protein	NA	NA	NA	NA
WP_021018345.1\|18496_19261_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.4e-57	49.0
WP_005429064.1\|19537_20446_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-102	68.7
WP_011999066.1\|20471_21728_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-131	56.7
WP_041853694.1\|21754_22387_+	aldolase	A0A077SK32	Escherichia_phage	9.7e-68	61.7
WP_011999068.1\|22386_23163_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_011999069.1\|23276_24734_+	gluconate permease	NA	NA	NA	NA
WP_011999070.1\|24842_25262_-	VOC family protein	NA	NA	NA	NA
WP_011999076.1\|27944_29513_-	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	3.3e-40	32.4
WP_005374632.1\|29685_30243_-	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA
29886:29900	attL	NA	NA	NA	NA
WP_021018343.1\|30548_31007_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_005374640.1\|31144_31567_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_005383516.1\|31831_32074_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011999078.1\|32087_32423_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011999079.1\|32476_33574_-	YdcF family protein	NA	NA	NA	NA
WP_004746427.1\|33916_34183_-	DUF2999 family protein	NA	NA	NA	NA
WP_080514187.1\|34486_35839_+	sphingomyelin phosphodiesterase	NA	NA	NA	NA
WP_011999081.1\|35933_37043_-	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_011999082.1\|37042_39553_-	ABC transporter permease	NA	NA	NA	NA
WP_011999083.1\|39539_40274_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-22	30.4
WP_021018342.1\|40582_41146_+	cysteine hydrolase	NA	NA	NA	NA
WP_005374689.1\|41249_41495_-	DUF3297 family protein	NA	NA	NA	NA
WP_011999088.1\|42118_42787_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011999089.1\|42837_43140_+	hypothetical protein	NA	NA	NA	NA
WP_021018341.1\|43384_43771_-	hypothetical protein	NA	NA	NA	NA
WP_011999092.1\|43813_45805_-	U32 family peptidase	NA	NA	NA	NA
WP_011999093.1\|45988_46927_-	hypothetical protein	NA	NA	NA	NA
WP_011999095.1\|47161_49048_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.4e-15	57.0
WP_011999096.1\|49366_52117_+	insulinase family protein	NA	NA	NA	NA
WP_011999097.1\|52180_52507_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_011999098.1\|52713_53142_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_021018339.1\|53669_54470_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_021018338.1\|54860_55595_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_086028444.1\|55981_56449_+	fimbrial protein	NA	NA	NA	NA
WP_011999105.1\|56517_58980_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_041853571.1\|58993_59749_+	molecular chaperone	NA	NA	NA	NA
WP_011999107.1\|59748_60786_+	hypothetical protein	NA	NA	NA	NA
WP_011999108.1\|60798_61791_+	OmpA family protein	NA	NA	NA	NA
WP_041853385.1\|62400_63711_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_011999112.1\|63795_64182_-	DUF2541 family protein	NA	NA	NA	NA
WP_011999114.1\|64533_65454_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-171	96.4
66202:66216	attR	NA	NA	NA	NA

DBSCAN-SWA_2

236085 : 321887

Vibrio_phage(65.85%)

integrase,portal,transposase,protease,terminase,tail,head,plate,capsid

attL 249509:249524|attR 272527:272542

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999262.1\|236085_237087_-\|protease	trypsin-like serine protease	V5LS29	Emiliania_huxleyi_virus	6.6e-18	28.8
WP_021018323.1\|237238_238141_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011999264.1\|238283_239207_+	DMT family transporter	NA	NA	NA	NA
WP_011999265.1\|239315_239756_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_048814362.1\|239843_240596_+	phosphatase	NA	NA	NA	NA
WP_041853688.1\|240696_241086_+	cytochrome b562 family protein	NA	NA	NA	NA
WP_080514159.1\|241263_241623_+	hypothetical protein	NA	NA	NA	NA
WP_011999269.1\|241778_243218_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_005432290.1\|243684_244614_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011999270.1\|244691_245165_-	hypothetical protein	NA	NA	NA	NA
WP_011999271.1\|245452_246136_+	spondin domain-containing protein	NA	NA	NA	NA
WP_011999272.1\|246145_246841_+	spondin domain-containing protein	NA	NA	NA	NA
WP_041853563.1\|246983_247715_+	response regulator transcription factor	NA	NA	NA	NA
WP_011999274.1\|247788_249162_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
249509:249524	attL	NA	NA	NA	NA
WP_021018318.1\|250016_251417_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_011999278.1\|251541_252873_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_011999279.1\|252922_253855_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011999280.1\|253851_256179_+	EAL domain-containing protein	NA	NA	NA	NA
WP_005432273.1\|256391_257585_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	8.6e-41	29.9
WP_038891494.1\|257788_258820_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	6.5e-21	88.5
WP_011999282.1\|258931_259969_-\|integrase	tyrosine-type recombinase/integrase	R9TMQ4	Vibrio_phage	2.8e-128	63.3
WP_011999285.1\|260785_261775_+	hypothetical protein	NA	NA	NA	NA
WP_011999286.1\|261764_262256_+	hypothetical protein	NA	NA	NA	NA
WP_011999287.1\|262256_264140_+	exonuclease	NA	NA	NA	NA
WP_011999288.1\|264365_266342_-	AAA family ATPase	NA	NA	NA	NA
WP_011999289.1\|266341_266968_-	phage repressor protein CI	A0A2I7RNF9	Vibrio_phage	1.9e-39	42.9
WP_005530092.1\|267064_267277_+	hypothetical protein	U3PFJ1	Vibrio_phage	1.3e-13	54.3
WP_011999291.1\|267390_267930_+	phage regulatory CII family protein	A0A2I7RNI1	Vibrio_phage	3.5e-50	55.3
WP_010645271.1\|267958_268159_+	hypothetical protein	A0A2I7RNH0	Vibrio_phage	2.6e-06	41.3
WP_011999292.1\|268158_268386_+	hypothetical protein	U3PIK2	Vibrio_phage	9.9e-15	49.3
WP_011999293.1\|268382_268619_+	hypothetical protein	NA	NA	NA	NA
WP_011999294.1\|268624_270511_+	replication endonuclease	A0A218M4H2	Erwinia_phage	1.5e-63	38.4
WP_011999295.1\|270561_270825_+	hypothetical protein	Q8HA64	Vibrio_phage	2.2e-13	56.9
WP_011999296.1\|270819_271071_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	1.2e-29	75.9
WP_011999297.1\|271170_271602_-	hypothetical protein	NA	NA	NA	NA
WP_011999298.1\|272075_272408_-	hypothetical protein	NA	NA	NA	NA
WP_011999300.1\|272929_273277_-	hypothetical protein	NA	NA	NA	NA
272527:272542	attR	NA	NA	NA	NA
WP_144080963.1\|273328_273556_-	hypothetical protein	NA	NA	NA	NA
WP_005530066.1\|274154_275162_-\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	1.2e-115	61.8
WP_011999302.1\|275166_276948_-\|terminase	terminase	A0A1D9C9R1	Salinivibrio_phage	3.0e-263	80.7
WP_011999303.1\|277122_277998_+\|capsid	GPO family capsid scaffolding protein	A0A2I7RNH1	Vibrio_phage	6.5e-78	60.1
WP_011999304.1\|277998_279009_+\|capsid	phage major capsid protein, P2 family	A0A1D9C9Q5	Salinivibrio_phage	4.3e-118	65.0
WP_011999305.1\|279012_279729_+\|terminase	terminase	A0A2I7RNJ0	Vibrio_phage	1.3e-68	58.0
WP_021018311.1\|279847_280267_+\|head	head completion/stabilization protein	A0A2I7RNH7	Vibrio_phage	2.1e-50	70.5
WP_011999307.1\|280263_280755_+\|tail	phage tail protein	A0A2I7RNH2	Vibrio_phage	4.9e-83	91.4
WP_011999308.1\|280738_281395_+	virion morphogenesis protein	A0A2I7RNI6	Vibrio_phage	7.2e-106	88.5
WP_011999309.1\|281410_282532_+	DUF2586 family protein	A0A2I7RNI8	Vibrio_phage	1.5e-180	82.7
WP_011999310.1\|282535_282991_+	DUF2597 family protein	A0A2I7RNI0	Vibrio_phage	3.7e-77	92.7
WP_011999311.1\|283003_283222_+	TraR/DksA C4-type zinc finger protein	A0A2I7RNJ6	Vibrio_phage	2.6e-20	72.1
WP_011999312.1\|283218_283731_+	hypothetical protein	A0A2I7S7C4	Vibrio_phage	8.0e-20	39.5
WP_011999313.1\|283727_283958_+	hypothetical protein	NA	NA	NA	NA
WP_005530042.1\|283960_284197_+	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	1.0e-09	42.7
WP_005530039.1\|284193_284457_+\|tail	putative phage tail assembly chaperone	A0A2I7RNJ9	Vibrio_phage	1.7e-29	78.3
WP_011999314.1\|284667_287223_+\|tail	phage tail tape measure protein	A0A1D9C9V3	Salinivibrio_phage	6.2e-230	53.5
WP_011999315.1\|287222_287555_+	DUF2590 family protein	A0A2I7RNH9	Vibrio_phage	1.1e-38	75.7
WP_011999316.1\|287547_288735_+\|plate	baseplate J/gp47 family protein	A0A2I7RNJ7	Vibrio_phage	4.1e-136	57.8
WP_011999317.1\|288754_289255_+	hypothetical protein	A0A2I7RNJ4	Vibrio_phage	3.7e-38	48.9
WP_011999318.1\|289258_290065_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.6e-27	44.6
WP_011999319.1\|290057_290813_+	hypothetical protein	NA	NA	NA	NA
WP_011999320.1\|290815_291046_+	hypothetical protein	NA	NA	NA	NA
WP_011999321.1\|291055_291592_+	hypothetical protein	A0A2I7RNK5	Vibrio_phage	1.3e-73	81.4
WP_011999322.1\|291605_292295_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.1e-112	80.7
WP_011999323.1\|292285_292984_+	hypothetical protein	A0A2I7RNK2	Vibrio_phage	3.9e-126	92.2
WP_011999324.1\|292983_293181_+	hypothetical protein	A0A2I7RNJ8	Vibrio_phage	1.6e-21	85.9
WP_048814469.1\|293612_293792_+	hypothetical protein	NA	NA	NA	NA
WP_011999327.1\|294140_295157_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011999328.1\|295267_296467_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	5.2e-102	48.0
WP_005537019.1\|296622_297117_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005530007.1\|298523_298658_+	hypothetical protein	R9TPW0	Vibrio_phage	5.3e-16	86.4
WP_021018308.1\|299058_299496_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
WP_011999336.1\|299522_299999_+	DUF285 domain-containing protein	NA	NA	NA	NA
WP_011999494.1\|300977_301289_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011999338.1\|301285_301639_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-15	42.7
WP_011999339.1\|301698_303231_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.6e-71	35.2
WP_011999341.1\|303670_305314_+	hypothetical protein	NA	NA	NA	NA
WP_021018306.1\|305313_307431_+	hypothetical protein	NA	NA	NA	NA
WP_011999494.1\|307606_307918_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|307914_308268_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021018384.1\|309566_310610_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011999345.1\|311089_312136_+	diguanylate cyclase	NA	NA	NA	NA
WP_021018303.1\|312173_313217_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011999347.1\|313373_314402_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011999348.1\|314709_315903_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_011999349.1\|315980_317195_+	OFA family MFS transporter	NA	NA	NA	NA
WP_021017672.1\|317379_318423_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_086028389.1\|318647_319444_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_038891499.1\|319783_320503_+	carbonic anhydrase	NA	NA	NA	NA
WP_011999352.1\|320564_321887_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

648821 : 720118

Enterobacteria_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012129097.1\|648821_650015_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129100.1\|650559_650985_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012129101.1\|651290_651485_-	hypothetical protein	NA	NA	NA	NA
WP_005433595.1\|651981_652230_-	hypothetical protein	NA	NA	NA	NA
WP_012129102.1\|652492_653131_+	pyroglutamyl-peptidase I	NA	NA	NA	NA
WP_012129104.1\|653306_653570_+	hypothetical protein	NA	NA	NA	NA
WP_005433589.1\|653633_654620_+	GTP-binding protein	NA	NA	NA	NA
WP_012127098.1\|654679_656002_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012129105.1\|656219_657839_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	3.0e-20	30.5
WP_012129106.1\|658004_659297_+	DEAD/DEAH box helicase	A0A1B1IS59	uncultured_Mediterranean_phage	4.0e-52	31.1
WP_021018263.1\|662636_663476_-	arginase	NA	NA	NA	NA
WP_005442559.1\|663482_664217_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_012129110.1\|664700_666170_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012129113.1\|667539_668625_+	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_012129114.1\|668669_671096_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_012129116.1\|671476_673009_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.7e-26	40.1
WP_012127165.1\|673068_673422_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-15	42.7
WP_011999494.1\|673418_673730_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010643691.1\|674964_675645_+	MaoC family dehydratase	NA	NA	NA	NA
WP_041853317.1\|676245_677556_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012129119.1\|677693_679850_-	c-type cytochrome	NA	NA	NA	NA
WP_010643707.1\|679846_680458_-	cbb3-type cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_012129120.1\|680459_681869_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_010643711.1\|681884_682274_-	cytochrome c	NA	NA	NA	NA
WP_012129122.1\|683247_684126_+	DMT family transporter	NA	NA	NA	NA
WP_012129125.1\|684864_685344_-	hypothetical protein	NA	NA	NA	NA
WP_010643718.1\|686461_687079_+	porin family protein	NA	NA	NA	NA
WP_086028365.1\|687170_688704_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012129127.1\|688818_689715_-	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	5.3e-43	36.2
WP_012129128.1\|689711_690557_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012129129.1\|690590_692195_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	2.1e-18	63.9
WP_012129130.1\|692216_693386_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_012129131.1\|693498_693882_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012129132.1\|694183_695395_+	thiolase family protein	NA	NA	NA	NA
WP_012129133.1\|695431_696925_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012129134.1\|696942_698097_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_012129135.1\|698165_698954_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012129136.1\|698962_700087_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012129137.1\|700098_701004_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_012129138.1\|701186_701945_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005431534.1\|702528_703410_+	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_005532284.1\|703415_705452_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_012129142.1\|705441_706041_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_012129143.1\|706040_706352_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_005532282.1\|706360_707233_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_041853551.1\|707497_708592_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_012129147.1\|708947_709844_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129148.1\|709999_710398_+	RidA family protein	NA	NA	NA	NA
WP_012129149.1\|710491_711952_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012129150.1\|712019_713009_+	membrane dipeptidase	NA	NA	NA	NA
WP_012127146.1\|714504_715698_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_012129154.1\|716212_717946_+	hypothetical protein	NA	NA	NA	NA
WP_012129155.1\|717945_718677_+	DUF3726 domain-containing protein	NA	NA	NA	NA
WP_012126481.1\|718738_720118_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.3e-48	27.2

DBSCAN-SWA_4

731387 : 774714

Leptospira_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021018259.1\|731387_732932_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-70	34.2
WP_012129164.1\|733160_733805_-	DUF799 family lipoprotein	NA	NA	NA	NA
WP_012129165.1\|733804_734176_-	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_012129166.1\|734172_734490_-	hypothetical protein	NA	NA	NA	NA
WP_012129167.1\|734489_735458_-	curli production assembly protein CsgG	NA	NA	NA	NA
WP_012129169.1\|735882_736626_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.4e-25	33.3
WP_012129170.1\|736715_737459_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012129171.1\|737460_738150_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_005431471.1\|738146_738815_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_012129172.1\|738954_739527_+	protocatechuate 3,4-dioxygenase subunit beta	NA	NA	NA	NA
WP_012129173.1\|739536_740367_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129174.1\|740485_741133_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_012129179.1\|743708_746723_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	3.4e-195	54.9
WP_012129180.1\|746818_747790_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_021018248.1\|749030_750074_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129184.1\|750111_751632_+	EAL domain-containing protein	NA	NA	NA	NA
WP_041853550.1\|751690_753352_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_012129187.1\|753631_754381_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_012129188.1\|754392_755358_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_012126704.1\|755655_756681_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012129191.1\|757308_758451_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_012129192.1\|758447_759431_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_012129193.1\|759423_760518_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_005431478.1\|761112_761433_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_005431501.1\|761667_762294_+	hypothetical protein	NA	NA	NA	NA
WP_012129195.1\|762381_763734_+	molecular chaperone	NA	NA	NA	NA
WP_012126704.1\|764123_765149_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_005431498.1\|765344_765821_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_012129196.1\|765913_766375_-	hypothetical protein	NA	NA	NA	NA
WP_012129198.1\|767038_768232_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_021018257.1\|769232_769529_-	hypothetical protein	NA	NA	NA	NA
WP_012129202.1\|769646_769982_-	hypothetical protein	NA	NA	NA	NA
WP_012129203.1\|770104_771286_-	hypothetical protein	NA	NA	NA	NA
WP_041853662.1\|771375_772044_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-27	34.8
WP_012129205.1\|772015_773257_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_011999187.1\|773388_774714_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

805447 : 871961

Enterobacteria_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021017672.1\|805447_806491_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011999348.1\|806618_807812_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129235.1\|808282_809326_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129236.1\|809691_812580_+	hypothetical protein	NA	NA	NA	NA
WP_012129239.1\|813327_813900_-	YceI family protein	NA	NA	NA	NA
WP_012129240.1\|814209_814824_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_012129243.1\|817715_819014_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011999348.1\|822726_823920_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129245.1\|823969_824389_+	hypothetical protein	NA	NA	NA	NA
WP_012129246.1\|824390_825071_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_086028426.1\|826021_827144_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012129250.1\|827898_828885_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.1e-17	31.0
WP_157722661.1\|829176_838578_+	tandem large repeat	NA	NA	NA	NA
WP_021017764.1\|838783_840328_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|840388_840742_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|840738_841050_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_048814473.1\|841083_842406_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_021018250.1\|842475_843375_-	DMT family transporter	NA	NA	NA	NA
WP_012129255.1\|843525_843978_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_012129256.1\|843991_844546_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012129257.1\|844549_844960_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012129258.1\|845088_846501_+	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA
WP_005426938.1\|846721_847174_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_005447071.1\|847175_847646_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_012129259.1\|847701_849549_-	acyltransferase	B5WZU0	Pseudomonas_phage	4.0e-61	40.5
WP_012129260.1\|849802_850078_+	hypothetical protein	NA	NA	NA	NA
WP_012129261.1\|850214_851315_-	alkene reductase	NA	NA	NA	NA
WP_012129262.1\|851326_851713_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_012129265.1\|852865_853387_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012129266.1\|853432_853870_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021018248.1\|854308_855352_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129268.1\|855362_856811_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.2e-21	47.3
WP_021018246.1\|856910_857246_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_086028355.1\|857623_858746_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	7.4e-26	33.0
WP_012129273.1\|860671_861811_+	exonuclease SbcCD subunit D	G3MA97	Bacillus_virus	2.4e-08	21.8
WP_012129274.1\|861820_864877_+	SMC family ATPase	E3SMW4	Prochlorococcus_phage	6.1e-06	22.4
WP_012129275.1\|864964_865345_-	pyruvate dehydrogenase	NA	NA	NA	NA
WP_041853653.1\|865718_867401_+	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_012129277.1\|867455_868835_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.4e-47	26.7
WP_086028361.1\|869254_870378_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012127656.1\|870917_871961_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

898372 : 955170

Vibrio_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021017672.1\|898372_899416_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_021018241.1\|899496_900657_-	MFS transporter	NA	NA	NA	NA
WP_021018240.1\|900833_901268_-	thioredoxin TrxC	A0A1X9I9P5	Staphylococcus_phage	1.7e-10	31.7
WP_012129304.1\|901433_902531_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_011999187.1\|902581_903907_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012129305.1\|905375_906938_-	DUF1800 domain-containing protein	NA	NA	NA	NA
WP_012129307.1\|907472_908735_-	hydroxymethylglutaryl-CoA reductase	A2RQD2	Archaeal_BJ1_virus	4.7e-05	36.6
WP_012129308.1\|909431_910064_+	DUF3299 domain-containing protein	NA	NA	NA	NA
WP_021018237.1\|910348_910567_+	hypothetical protein	NA	NA	NA	NA
WP_012129310.1\|910627_912331_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005536098.1\|912482_912776_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012129311.1\|912802_913204_+	membrane protein	NA	NA	NA	NA
WP_012129312.1\|913218_913659_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_012129313.1\|913692_914556_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_012129314.1\|914864_916985_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	2.8e-268	64.9
WP_005435220.1\|917070_917541_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	6.2e-51	62.9
WP_012129316.1\|917689_919075_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012127146.1\|919850_921044_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_041853651.1\|921582_922770_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_012129320.1\|922782_923460_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_012126481.1\|923534_924914_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.3e-48	27.2
WP_012129321.1\|925093_925630_-	hypothetical protein	NA	NA	NA	NA
WP_010644161.1\|925795_926167_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA
WP_041853544.1\|926331_927783_+	cobyric acid synthase	NA	NA	NA	NA
WP_012129323.1\|927873_928626_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012129324.1\|928638_929328_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_012129325.1\|929324_930431_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	3.9e-19	33.0
WP_005427129.1\|930516_930954_-	DUF3069 domain-containing protein	NA	NA	NA	NA
WP_041853543.1\|931197_932157_+	diguanylate cyclase	W8CYM9	Bacillus_phage	9.7e-11	32.2
WP_041853542.1\|932280_933525_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.7e-11	27.0
WP_021018234.1\|933780_934149_+	late competence development ComFB family protein	NA	NA	NA	NA
WP_012129329.1\|934213_934495_+	hypothetical protein	NA	NA	NA	NA
WP_012129330.1\|934929_936486_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_012129331.1\|936498_937893_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_041853541.1\|938046_939501_+	DUF3404 domain-containing protein	NA	NA	NA	NA
WP_012129333.1\|939475_940138_+	response regulator transcription factor	NA	NA	NA	NA
WP_012129334.1\|940146_941028_+	DUF2861 family protein	NA	NA	NA	NA
WP_012129335.1\|941087_942209_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_012129336.1\|942251_942407_+	YoaH family protein	NA	NA	NA	NA
WP_086028365.1\|944779_946313_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012129340.1\|947937_948468_-	hypothetical protein	NA	NA	NA	NA
WP_012129342.1\|948990_949908_+	hypothetical protein	NA	NA	NA	NA
WP_086028361.1\|950212_951336_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_086028365.1\|951652_953186_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080514168.1\|953257_953545_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.8e-11	43.6
WP_012129346.1\|953604_955170_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.9e-26	40.1

DBSCAN-SWA_7

961671 : 968454

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021018230.1\|961671_963057_-	hypothetical protein	Q783T9	Vibrio_phage	3.1e-236	84.4
WP_021018229.1\|963061_963406_-	DUF2523 domain-containing protein	Q783U0	Vibrio_phage	1.5e-43	73.7
WP_012129361.1\|963407_964505_-	hypothetical protein	Q783U1	Vibrio_phage	1.1e-85	61.6
WP_012129363.1\|965030_965279_-	hypothetical protein	Q783U2	Vibrio_phage	8.6e-28	89.0
WP_012129364.1\|965284_965515_-	hypothetical protein	Q783U3	Vibrio_phage	1.7e-30	88.2
WP_012127988.1\|965520_965880_-	DUF1293 family protein	Q783U4	Vibrio_phage	7.2e-60	95.8
WP_012129365.1\|965883_967029_-	replication initiation factor domain-containing protein	A0A1W6UG38	Vibrio_phage	1.3e-208	90.6
WP_005531344.1\|967012_967228_-	hypothetical protein	A0A1W6UGD1	Vibrio_phage	7.2e-31	87.3
WP_012129366.1\|967231_967633_-	hypothetical protein	NA	NA	NA	NA
WP_021018226.1\|967616_967880_-	hypothetical protein	NA	NA	NA	NA
WP_012129368.1\|968085_968454_+	hypothetical protein	Q9MCC3	Vibrio_phage	1.7e-32	60.3

DBSCAN-SWA_8

990010 : 1117612

Leptospira_phage(33.33%)

plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012129386.1\|990010_990613_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_012129387.1\|990696_991896_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_012129388.1\|992102_994013_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_012129389.1\|994085_995741_+	ABC-ATPase domain-containing protein	NA	NA	NA	NA
WP_012129390.1\|995856_996477_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012129391.1\|996590_997430_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_012129393.1\|997652_998249_+	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_021018225.1\|998210_998543_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_005531301.1\|998552_998804_-	hypothetical protein	NA	NA	NA	NA
WP_012129395.1\|998787_1000494_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_012129396.1\|1000573_1000807_-	DUF3389 domain-containing protein	NA	NA	NA	NA
WP_012129397.1\|1000819_1001257_-	hotdog fold thioesterase	NA	NA	NA	NA
WP_012129398.1\|1001437_1002235_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_041853648.1\|1002312_1003395_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_012129400.1\|1003753_1004998_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_012129401.1\|1005020_1007501_+	lipase	NA	NA	NA	NA
WP_012129402.1\|1007635_1007845_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_012129403.1\|1008125_1008683_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_021018224.1\|1008839_1009757_+	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_011999339.1\|1009816_1011349_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.6e-71	35.2
WP_011999338.1\|1011408_1011762_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-15	42.7
WP_011999494.1\|1011758_1012070_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011999045.1\|1012632_1012920_-	hypothetical protein	NA	NA	NA	NA
WP_012129407.1\|1012903_1014226_-	hypothetical protein	NA	NA	NA	NA
WP_012129408.1\|1014862_1015213_-	hypothetical protein	NA	NA	NA	NA
WP_012129410.1\|1015462_1018006_-	peptidase	NA	NA	NA	NA
WP_012129411.1\|1018005_1018221_-	hypothetical protein	NA	NA	NA	NA
WP_012129412.1\|1018217_1019303_-	hypothetical protein	NA	NA	NA	NA
WP_012129413.1\|1019268_1019997_-	hypothetical protein	NA	NA	NA	NA
WP_012129416.1\|1022846_1023347_-	hypothetical protein	NA	NA	NA	NA
WP_012129417.1\|1023697_1024231_-	hypothetical protein	NA	NA	NA	NA
WP_011999348.1\|1024853_1026047_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_086028371.1\|1026172_1026969_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_021018212.1\|1027025_1027913_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129420.1\|1028732_1030649_-	diguanylate cyclase	G3MA91	Bacillus_virus	7.9e-28	42.2
WP_012129421.1\|1030645_1031185_-	YfiR family protein	NA	NA	NA	NA
WP_012129422.1\|1031178_1033335_-	TonB-dependent receptor	NA	NA	NA	NA
WP_041853645.1\|1033585_1033915_-	hypothetical protein	NA	NA	NA	NA
WP_012129425.1\|1034651_1035572_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	6.2e-172	96.4
WP_005495177.1\|1035675_1036467_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_005426887.1\|1036463_1037789_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_077201632.1\|1037800_1038301_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012129426.1\|1038293_1039808_-	FHA domain-containing protein	NA	NA	NA	NA
WP_021018210.1\|1039817_1040417_-	hypothetical protein	NA	NA	NA	NA
WP_012129428.1\|1041039_1042344_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_012129429.1\|1042371_1045761_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_005427005.1\|1045793_1046246_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_005532465.1\|1046345_1047344_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012129430.1\|1047340_1049089_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_005532467.1\|1049099_1049510_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012129431.1\|1049571_1051047_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_005449476.1\|1051055_1051562_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012129432.1\|1051588_1053190_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_021018209.1\|1053189_1055193_-	protein kinase	A0A2I2L4T9	Orpheovirus	8.9e-06	24.6
WP_012129434.1\|1055428_1056373_-	hypothetical protein	NA	NA	NA	NA
WP_012129435.1\|1056365_1057358_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_012129436.1\|1057338_1058658_-	hypothetical protein	NA	NA	NA	NA
WP_012129437.1\|1058759_1059245_-	hypothetical protein	NA	NA	NA	NA
WP_012129438.1\|1059244_1061323_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.4e-33	27.0
WP_005426983.1\|1061395_1061914_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_041853643.1\|1062369_1065048_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.6e-90	30.8
WP_012129441.1\|1065034_1066663_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012129442.1\|1066782_1070418_-	OmpA family protein	NA	NA	NA	NA
WP_012129443.1\|1070447_1071542_-	hypothetical protein	NA	NA	NA	NA
WP_012129444.1\|1071535_1072849_-	hypothetical protein	NA	NA	NA	NA
WP_012129445.1\|1072914_1074612_-	hypothetical protein	NA	NA	NA	NA
WP_011999187.1\|1075371_1076697_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012129448.1\|1077541_1078906_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_012129454.1\|1081504_1082410_-	EamA family transporter RarD	NA	NA	NA	NA
WP_012129455.1\|1082492_1083215_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012129456.1\|1083395_1084376_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	5.8e-136	75.9
WP_005426806.1\|1084636_1085359_-	nitroreductase family protein	NA	NA	NA	NA
WP_012128174.1\|1085644_1086673_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129458.1\|1086844_1087453_+	response regulator transcription factor	NA	NA	NA	NA
WP_086028371.1\|1087482_1088279_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011999348.1\|1089517_1090711_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012126736.1\|1091316_1093506_-	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_012129460.1\|1095361_1096555_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.7e-68	38.4
WP_021018205.1\|1096951_1097314_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_012129463.1\|1098049_1099546_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.5e-26	40.1
WP_011998799.1\|1099605_1099959_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1099955_1100267_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012127098.1\|1100399_1101722_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005424996.1\|1101843_1102035_-	hypothetical protein	NA	NA	NA	NA
WP_021018204.1\|1102313_1103333_-	TerC family protein	A0A291LBC5	Escherichia_phage	1.4e-39	36.7
WP_038863590.1\|1103862_1105605_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_012129468.1\|1105878_1107513_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_041853639.1\|1107573_1108884_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_005530845.1\|1109543_1110023_-	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_021018202.1\|1110319_1111225_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129473.1\|1111511_1112963_+	formate transporter FocA	NA	NA	NA	NA
WP_005530839.1\|1113080_1113650_-	YceI family protein	NA	NA	NA	NA
WP_005530836.1\|1113646_1114186_-	cytochrome b	NA	NA	NA	NA
WP_005530834.1\|1114360_1114603_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_005530832.1\|1114733_1115366_+	hypothetical protein	NA	NA	NA	NA
WP_021017764.1\|1116067_1117612_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2

DBSCAN-SWA_9

1155983 : 1200899

Vibrio_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012127098.1\|1155983_1157306_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_041853534.1\|1157565_1158684_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_005431308.1\|1158951_1159575_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012129509.1\|1159953_1161249_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-103	52.3
WP_005431364.1\|1161300_1161681_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_012129510.1\|1161810_1164675_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	3.0e-273	52.3
WP_012129512.1\|1165207_1166110_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.1e-162	93.6
WP_012129513.1\|1166696_1169249_-	peptidase	NA	NA	NA	NA
WP_012129411.1\|1169248_1169464_-	hypothetical protein	NA	NA	NA	NA
WP_157722665.1\|1169460_1170429_-	hypothetical protein	NA	NA	NA	NA
WP_011999328.1\|1171621_1172821_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	5.2e-102	48.0
WP_086028371.1\|1174132_1174928_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012129522.1\|1175614_1176523_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.4e-162	93.4
WP_012129523.1\|1177109_1179683_-	peptidase	NA	NA	NA	NA
WP_012129411.1\|1179682_1179898_-	hypothetical protein	NA	NA	NA	NA
WP_012129412.1\|1179894_1180980_-	hypothetical protein	NA	NA	NA	NA
WP_012129413.1\|1180945_1181674_-	hypothetical protein	NA	NA	NA	NA
WP_012129524.1\|1181692_1184497_-	CS1-pili formation C-terminal domain-containing protein	NA	NA	NA	NA
WP_012129416.1\|1184519_1185020_-	hypothetical protein	NA	NA	NA	NA
WP_012129525.1\|1185105_1185648_-	hypothetical protein	NA	NA	NA	NA
WP_021017672.1\|1187388_1188432_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129529.1\|1188916_1189837_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.9e-166	93.4
WP_012129531.1\|1190119_1192228_+	LruC domain-containing protein	NA	NA	NA	NA
WP_012129532.1\|1192240_1192717_+	hypothetical protein	NA	NA	NA	NA
WP_012129534.1\|1193130_1194027_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_012129535.1\|1194027_1195044_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_012129536.1\|1195040_1196012_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_012129537.1\|1196011_1196776_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	W6JKT0	Anomala_cuprea_entomopoxvirus	9.8e-14	25.1
WP_012129538.1\|1196824_1198966_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012129539.1\|1199061_1199556_-	YcxB family protein	NA	NA	NA	NA
WP_086028361.1\|1199775_1200899_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6

DBSCAN-SWA_10

1212355 : 1255465

Enterobacteria_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086028365.1\|1212355_1213889_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012129552.1\|1213963_1214215_-	hypothetical protein	NA	NA	NA	NA
WP_048814421.1\|1214491_1215655_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_005431386.1\|1215909_1216368_-	hypothetical protein	NA	NA	NA	NA
WP_012129555.1\|1216478_1216670_-	hypothetical protein	NA	NA	NA	NA
WP_012129558.1\|1217807_1218809_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_011999348.1\|1219020_1220214_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_041853531.1\|1220452_1221244_+	hypothetical protein	NA	NA	NA	NA
WP_011999347.1\|1222706_1223735_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_021018181.1\|1223799_1224282_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_080514171.1\|1224299_1224629_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_005431367.1\|1224868_1225219_-	DUF3147 family protein	NA	NA	NA	NA
WP_012129566.1\|1226422_1227085_-	HAD family hydrolase	NA	NA	NA	NA
WP_012129567.1\|1227092_1227452_-	hypothetical protein	NA	NA	NA	NA
WP_012127146.1\|1227458_1228652_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_162600501.1\|1228742_1229492_-	hypothetical protein	NA	NA	NA	NA
WP_012127698.1\|1231039_1231780_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.7e-48	43.2
WP_012127697.1\|1231790_1233323_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.9e-110	42.1
WP_011998779.1\|1234039_1234393_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1234389_1234701_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012129573.1\|1234777_1235827_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012129574.1\|1235816_1237037_-	MFS transporter	NA	NA	NA	NA
WP_012129575.1\|1237033_1238290_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_012129576.1\|1238273_1239284_-	phosphotransferase	NA	NA	NA	NA
WP_012129577.1\|1239295_1239814_-	dCTP deaminase	NA	NA	NA	NA
WP_012129578.1\|1239810_1240296_-	deoxycytidine deaminase	NA	NA	NA	NA
WP_012129580.1\|1240456_1241137_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012129583.1\|1241383_1241857_-	hypothetical protein	NA	NA	NA	NA
WP_012129584.1\|1242000_1243200_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.1e-101	47.8
WP_011999348.1\|1243328_1244522_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_144080947.1\|1244490_1245045_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_012129587.1\|1245569_1245908_-	hypothetical protein	A0A1P8DTL0	Salmonella_phage	2.7e-08	37.4
WP_086028361.1\|1246408_1247532_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_086028432.1\|1248165_1248961_-\|transposase	IS5-like element ISVha3 family transposase	NA	NA	NA	NA
WP_005426767.1\|1249512_1250457_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_041853530.1\|1250866_1252048_+	quorum-sensing autoinducer CAI-1 synthase	NA	NA	NA	NA
WP_012129595.1\|1252154_1254200_-	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	2.9e-12	38.3
WP_021017672.1\|1254421_1255465_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1277181 : 1404155

Enterobacteria_phage(33.33%)

transposase,integrase,holin

attL 1368895:1368908|attR 1403467:1403480

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012129615.1\|1277181_1278375_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_041853529.1\|1279022_1281380_+	fatty acid cis/trans isomerase	NA	NA	NA	NA
WP_005533325.1\|1281398_1281590_+	hypothetical protein	NA	NA	NA	NA
WP_012129618.1\|1281655_1284613_-	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	6.6e-50	32.8
WP_041853528.1\|1284701_1285706_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA
WP_005431754.1\|1285770_1286226_+	methylglyoxal synthase	NA	NA	NA	NA
WP_012129620.1\|1286311_1288381_-	DNA helicase IV	A7KV33	Bacillus_phage	2.5e-19	25.9
WP_012129621.1\|1288674_1290828_+	TIGR01666 family membrane protein	H9YQA8	environmental_Halophage	1.6e-05	29.5
WP_005533336.1\|1291363_1291630_+	hypothetical protein	NA	NA	NA	NA
WP_012129626.1\|1291892_1310528_-	retention module-containing protein	NA	NA	NA	NA
WP_012129627.1\|1311391_1311640_+	YgjV family protein	NA	NA	NA	NA
WP_012129629.1\|1311808_1312195_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012129630.1\|1312281_1313037_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-12	26.9
WP_012129631.1\|1313039_1313990_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_012129632.1\|1313982_1314918_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	5.0e-68	42.9
WP_012129633.1\|1314940_1315849_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005431817.1\|1316093_1316249_+	DUF3012 domain-containing protein	NA	NA	NA	NA
WP_012129634.1\|1316333_1317014_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012129635.1\|1317136_1317868_-	nucleoside phosphorylase	NA	NA	NA	NA
WP_005530599.1\|1317872_1318610_-	nicotinamide riboside transporter PnuC	A0A126HGA3	Vibrio_phage	1.4e-25	34.9
WP_012129636.1\|1319209_1320220_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012129637.1\|1320237_1321155_-	ribokinase	NA	NA	NA	NA
WP_012129638.1\|1321357_1322236_-	ribose ABC transporter substrate-binding protein RbsB	C6ZCU4	Enterobacteria_phage	4.3e-05	22.7
WP_005431792.1\|1322327_1323311_-	ribose ABC transporter permease	NA	NA	NA	NA
WP_012129639.1\|1323307_1324813_-	ribose ABC transporter ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	2.6e-18	28.2
WP_012129640.1\|1324837_1325257_-	D-ribose pyranase	NA	NA	NA	NA
WP_012129641.1\|1325794_1328131_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012129643.1\|1328796_1329990_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	4.8e-68	38.1
WP_012129645.1\|1330673_1331312_+	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_012128611.1\|1331456_1332836_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.9e-49	27.2
WP_021018168.1\|1333037_1333445_+	hypothetical protein	NA	NA	NA	NA
WP_012129648.1\|1333539_1333857_+	hypothetical protein	NA	NA	NA	NA
WP_005431873.1\|1333942_1334620_-	DedA family protein	NA	NA	NA	NA
WP_012129649.1\|1334670_1335078_-	hypothetical protein	NA	NA	NA	NA
WP_012129650.1\|1335215_1335734_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_012129652.1\|1336406_1337222_-	sterol desaturase family protein	NA	NA	NA	NA
WP_012129653.1\|1337231_1338242_-	DUF2804 domain-containing protein	NA	NA	NA	NA
WP_012129654.1\|1338466_1338934_-	OsmC family protein	NA	NA	NA	NA
WP_012128517.1\|1340299_1341772_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.0e-131	50.4
WP_012129658.1\|1343571_1344543_-	c-type cytochrome	NA	NA	NA	NA
WP_041853527.1\|1344800_1348403_+	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	1.1e-33	26.5
WP_012129660.1\|1348403_1349546_+	EAL domain-containing response regulator	NA	NA	NA	NA
WP_012129661.1\|1349605_1351273_+	response regulator	NA	NA	NA	NA
WP_012129663.1\|1351675_1353043_+	nodulation protein NfeD	NA	NA	NA	NA
WP_012129664.1\|1353052_1353844_+	slipin family protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	5.4e-23	28.1
WP_012129665.1\|1354062_1354719_+	nitroreductase family protein	NA	NA	NA	NA
WP_012129666.1\|1354862_1356047_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-26	35.2
WP_005425967.1\|1356048_1356891_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_021018166.1\|1356953_1357892_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012129668.1\|1357934_1359644_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	1.9e-57	30.7
WP_012129669.1\|1359663_1361124_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_009700210.1\|1361140_1361740_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_086028361.1\|1362365_1363488_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.6e-26	32.6
WP_012129670.1\|1363612_1364875_-	amidohydrolase family protein	NA	NA	NA	NA
WP_012129671.1\|1365106_1366579_-	hypothetical protein	NA	NA	NA	NA
WP_012129672.1\|1366617_1367268_-	OmpA family protein	NA	NA	NA	NA
WP_012129673.1\|1367276_1368824_-	pilus assembly protein	NA	NA	NA	NA
WP_012129674.1\|1368828_1369389_-	hypothetical protein	NA	NA	NA	NA
1368895:1368908	attL	NA	NA	NA	NA
WP_041853526.1\|1369375_1369858_-	pilus assembly protein	NA	NA	NA	NA
WP_012129676.1\|1369860_1370583_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005425863.1\|1370594_1371437_-	type II secretion system F family protein	NA	NA	NA	NA
WP_005425870.1\|1371433_1372336_-	type II secretion system F family protein	NA	NA	NA	NA
WP_012129677.1\|1372337_1373609_-	CpaF family protein	NA	NA	NA	NA
WP_012129678.1\|1373605_1374847_-	hypothetical protein	NA	NA	NA	NA
WP_012129679.1\|1374849_1375326_-	hypothetical protein	NA	NA	NA	NA
WP_012129680.1\|1375322_1376693_-	pilus assembly protein N-terminal domain-containing protein	NA	NA	NA	NA
WP_012129681.1\|1376692_1377517_-	pilus assembly protein CpaB	NA	NA	NA	NA
WP_021018165.1\|1377538_1377955_-	prepilin peptidase	NA	NA	NA	NA
WP_012129683.1\|1378118_1378325_-	Flp family type IVb pilin	NA	NA	NA	NA
WP_012129684.1\|1378791_1379700_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011999348.1\|1379668_1380862_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129685.1\|1380957_1381449_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_012129686.1\|1381454_1383464_-	AAA family ATPase	NA	NA	NA	NA
WP_012127146.1\|1385415_1386609_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_012129690.1\|1387254_1388337_+	hypothetical protein	NA	NA	NA	NA
WP_012129691.1\|1388336_1393094_+	hypothetical protein	NA	NA	NA	NA
WP_012129693.1\|1393299_1394484_+	TniQ family protein	NA	NA	NA	NA
WP_012129694.1\|1394484_1396407_+	type I-F CRISPR-associated protein Csy2	NA	NA	NA	NA
WP_012129695.1\|1396378_1397437_+	type I-F CRISPR-associated protein Csy3	NA	NA	NA	NA
WP_021018164.1\|1397439_1398039_+	type I-F CRISPR-associated endoribonuclease Cas6/Csy4	NA	NA	NA	NA
WP_012129697.1\|1398533_1398740_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012129698.1\|1398831_1399380_+	hypothetical protein	NA	NA	NA	NA
WP_012129699.1\|1399373_1400768_+	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	2.5e-39	32.3
WP_012129700.1\|1400858_1401839_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_012129701.1\|1401860_1402862_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012129703.1\|1402961_1404155_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	9.8e-69	38.4
1403467:1403480	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1442572 : 1504354

Enterobacteria_phage(23.08%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012128611.1\|1442572_1443952_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.9e-49	27.2
WP_012129738.1\|1444010_1445063_-	3-deoxy-7-phosphoheptulonate synthase AroG	S4W5F1	Pandoravirus	3.7e-80	49.5
WP_010647147.1\|1445523_1446504_+	OmpA family protein	NA	NA	NA	NA
WP_012129741.1\|1446965_1447880_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_012129742.1\|1447872_1448892_-	COX15/CtaA family protein	NA	NA	NA	NA
WP_012129743.1\|1448904_1449441_-	hypothetical protein	NA	NA	NA	NA
WP_012129744.1\|1449437_1450205_-	SURF1 family protein	NA	NA	NA	NA
WP_012129745.1\|1450203_1450440_+	DUF2909 domain-containing protein	NA	NA	NA	NA
WP_012129746.1\|1450442_1451327_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_012129747.1\|1451338_1451929_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_012129748.1\|1451949_1453590_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.5e-11	35.5
WP_080514177.1\|1453586_1454750_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_021018154.1\|1455079_1456774_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.8e-93	37.1
WP_011999278.1\|1457097_1458429_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012129754.1\|1458813_1459446_-	LysE family translocator	NA	NA	NA	NA
WP_012129755.1\|1459687_1460515_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012129756.1\|1460586_1461330_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_012129757.1\|1461326_1461638_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_012129758.1\|1461646_1462261_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_041853524.1\|1462467_1463502_-	porin	NA	NA	NA	NA
WP_005426000.1\|1464070_1465039_+	porin	NA	NA	NA	NA
WP_012128611.1\|1465355_1466735_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.9e-49	27.2
WP_012127146.1\|1466872_1468066_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_010647169.1\|1468297_1469137_+	DMT family transporter	NA	NA	NA	NA
WP_012129764.1\|1469199_1469814_+	glutaredoxin	A0A0K1YA09	Cronobacter_phage	7.6e-09	45.1
WP_005426002.1\|1470148_1470496_-	hypothetical protein	NA	NA	NA	NA
WP_021018151.1\|1470615_1471806_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_012129766.1\|1471917_1472805_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129767.1\|1472992_1474987_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
WP_012129768.1\|1474986_1475940_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012129769.1\|1476031_1478179_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012129770.1\|1478386_1479295_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012129774.1\|1480350_1481136_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.2e-12	26.8
WP_012129775.1\|1483258_1484578_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2D0WXW0	Clostridium_phage	2.6e-14	35.4
WP_012129776.1\|1484668_1485298_-	hypothetical protein	NA	NA	NA	NA
WP_012129778.1\|1485447_1485849_+	GFA family protein	NA	NA	NA	NA
WP_041853522.1\|1486029_1486701_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_005533370.1\|1487171_1488536_+	YjiH family protein	NA	NA	NA	NA
WP_021018143.1\|1488963_1490007_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129782.1\|1490102_1491974_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-20	42.9
WP_012129783.1\|1492051_1492363_-	hypothetical protein	NA	NA	NA	NA
WP_041853385.1\|1492563_1493874_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012129785.1\|1494491_1495649_-	tyrosine transporter	NA	NA	NA	NA
WP_012129786.1\|1496433_1496745_-	hypothetical protein	NA	NA	NA	NA
WP_012129787.1\|1496885_1497233_+	helix-turn-helix transcriptional regulator	Q8H9R3	Vibrio_phage	9.9e-14	48.4
WP_021018147.1\|1498135_1499884_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_012129792.1\|1500486_1501026_+	redoxin family protein	NA	NA	NA	NA
WP_012129794.1\|1501875_1502670_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	8.8e-42	40.4
WP_012129795.1\|1502670_1503048_+	hypothetical protein	NA	NA	NA	NA
WP_011999529.1\|1503160_1504354_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	5.7e-69	38.4

DBSCAN-SWA_13

1515391 : 1571724

Enterobacteria_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011999348.1\|1515391_1516585_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129807.1\|1516905_1517850_-	sugar kinase	NA	NA	NA	NA
WP_012129808.1\|1517952_1519473_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_021018143.1\|1519627_1520671_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129810.1\|1521257_1522703_-	D-aminoacylase	NA	NA	NA	NA
WP_012129813.1\|1524243_1525107_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_041853612.1\|1525479_1526427_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_005534577.1\|1526431_1527358_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	3.7e-23	34.6
WP_005425148.1\|1527357_1528455_+	ABC transporter permease	NA	NA	NA	NA
WP_012129816.1\|1528532_1528865_-	hypothetical protein	NA	NA	NA	NA
WP_012129817.1\|1529095_1530022_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_012129818.1\|1530115_1534354_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_041853521.1\|1534669_1535107_+	hypothetical protein	NA	NA	NA	NA
WP_012129820.1\|1535241_1536633_+	TolC family protein	NA	NA	NA	NA
WP_012129821.1\|1536797_1538531_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012129822.1\|1538533_1541713_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_005425081.1\|1541791_1542358_+	copper-binding protein	NA	NA	NA	NA
WP_012129823.1\|1542431_1543055_-	homoserine/homoserine lactone efflux protein	NA	NA	NA	NA
WP_021018142.1\|1543163_1544042_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012129825.1\|1544366_1545218_+	CARB/PSE/RTG family carbenicillin-hydrolyzing class A beta-lactamase	A0A077SL40	Escherichia_phage	5.5e-50	42.0
WP_012129827.1\|1545432_1545831_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_021018141.1\|1545850_1546366_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012129829.1\|1546492_1546855_-	VOC family protein	NA	NA	NA	NA
WP_012127656.1\|1548356_1549400_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012129832.1\|1550256_1550787_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_080514178.1\|1550822_1551983_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012129834.1\|1552014_1552935_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-171	96.4
WP_144080945.1\|1552999_1553200_-	hypothetical protein	NA	NA	NA	NA
WP_021018139.1\|1555087_1557244_-	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	1.8e-65	32.8
WP_012129842.1\|1557671_1558700_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005426417.1\|1560438_1560690_+	hypothetical protein	NA	NA	NA	NA
WP_021018138.1\|1560846_1561272_+	universal stress protein	NA	NA	NA	NA
WP_011999278.1\|1561433_1562765_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012129846.1\|1562817_1563570_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_012129847.1\|1563562_1564315_-	glycerophosphoryl diester phosphodiesterase	M1HTS7	Paramecium_bursaria_Chlorella_virus	5.3e-20	28.7
WP_012129848.1\|1564545_1565853_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
WP_012129849.1\|1565980_1566862_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA
WP_012129850.1\|1566861_1567710_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA
WP_012129851.1\|1567710_1568868_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	3.9e-22	33.5
WP_012129852.1\|1568860_1569685_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_012129853.1\|1569708_1569897_-	hypothetical protein	NA	NA	NA	NA
WP_012127491.1\|1570191_1571724_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.7e-26	40.1

DBSCAN-SWA_14

1595504 : 1645443

Leptospira_phage(36.36%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012129880.1\|1595504_1597037_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.2e-71	35.4
WP_012127165.1\|1597096_1597450_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.8e-15	42.7
WP_021017836.1\|1597446_1597758_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_157722666.1\|1598098_1600708_-	hypothetical protein	NA	NA	NA	NA
WP_048814458.1\|1600647_1603506_-	calcium-binding protein	NA	NA	NA	NA
WP_021018133.1\|1603519_1604230_-	hypothetical protein	NA	NA	NA	NA
WP_012129885.1\|1604426_1607765_-	calcium-binding protein	A0A2H4JEI4	uncultured_Caudovirales_phage	4.1e-16	40.2
WP_012129888.1\|1608472_1608928_-	hypothetical protein	NA	NA	NA	NA
WP_012129891.1\|1611001_1612375_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_144080972.1\|1612359_1614411_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	6.9e-38	29.2
WP_041853608.1\|1615396_1615963_+	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	6.7e-52	55.6
WP_011999348.1\|1616075_1617269_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_011998890.1\|1618124_1618322_-	hypothetical protein	NA	NA	NA	NA
WP_012129897.1\|1618392_1619112_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_012129898.1\|1619550_1621035_+	DUF1800 family protein	NA	NA	NA	NA
WP_012129899.1\|1621040_1622387_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_012129900.1\|1622511_1623306_-	metal ABC transporter permease	NA	NA	NA	NA
WP_012129901.1\|1623309_1624236_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012129902.1\|1624225_1625368_-	hypothetical protein	NA	NA	NA	NA
WP_005532354.1\|1625977_1626217_-	YdcH family protein	NA	NA	NA	NA
WP_011999348.1\|1626346_1627540_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_012129906.1\|1627790_1628660_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012129907.1\|1628791_1629940_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_021018131.1\|1630377_1631406_+	hypothetical protein	NA	NA	NA	NA
WP_012127146.1\|1631862_1633056_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.8e-68	38.1
WP_012129911.1\|1633310_1633775_-	hypothetical protein	NA	NA	NA	NA
WP_012129912.1\|1634017_1634728_+	lipoate--protein ligase A	NA	NA	NA	NA
WP_012129913.1\|1635238_1635673_+	DUF4402 domain-containing protein	NA	NA	NA	NA
WP_012129914.1\|1635739_1636174_+	DUF4402 domain-containing protein	NA	NA	NA	NA
WP_012129915.1\|1636170_1636863_+	molecular chaperone	NA	NA	NA	NA
WP_048814459.1\|1637053_1639336_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_012129917.1\|1639599_1641183_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.8e-52	35.5
WP_021018259.1\|1641172_1642717_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-70	34.2
WP_011998779.1\|1642777_1643131_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1643127_1643439_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_086028385.1\|1643908_1645443_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

1839405 : 1908701

Wolbachia_phage(18.18%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012130098.1\|1839405_1840785_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.3e-48	27.2
WP_103025446.1\|1842510_1842741_+	hypothetical protein	NA	NA	NA	NA
WP_012130100.1\|1842818_1843430_+	DUF2913 family protein	NA	NA	NA	NA
WP_041853507.1\|1843522_1844923_-	tryptophanase	NA	NA	NA	NA
WP_021018093.1\|1845219_1846464_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
WP_012130105.1\|1846633_1847041_+	hypothetical protein	NA	NA	NA	NA
WP_012130106.1\|1847087_1847609_-	GrpB family protein	NA	NA	NA	NA
WP_012130107.1\|1847758_1848991_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_012130108.1\|1848999_1851123_-	TRAP transporter permease	NA	NA	NA	NA
WP_012130109.1\|1851211_1852222_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_012130112.1\|1853055_1854366_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_012130113.1\|1854432_1855782_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012130114.1\|1855956_1858017_+	PAS domain S-box protein	NA	NA	NA	NA
WP_012130115.1\|1858164_1859556_+	family 1 glycosylhydrolase	NA	NA	NA	NA
WP_012130116.1\|1859643_1861680_-	PhoX family phosphatase	NA	NA	NA	NA
WP_005432583.1\|1861899_1862238_+	YggL family protein	NA	NA	NA	NA
WP_005432584.1\|1862943_1863810_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012130119.1\|1863977_1864223_+	hypothetical protein	NA	NA	NA	NA
WP_012130120.1\|1864723_1865626_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	4.0e-06	38.8
WP_005432587.1\|1866002_1866908_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	1.8e-38	35.4
WP_012130123.1\|1866971_1867400_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_012130124.1\|1867459_1868209_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_041853595.1\|1868545_1870456_+	arginine decarboxylase	NA	NA	NA	NA
WP_012130126.1\|1870457_1871378_+	agmatinase	NA	NA	NA	NA
WP_012130127.1\|1871640_1872846_+	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA
WP_021018090.1\|1873123_1875289_+	oligopeptidase B	F2Y2S5	Organic_Lake_phycodnavirus	4.0e-12	21.6
WP_041853506.1\|1875467_1876451_-	porin	NA	NA	NA	NA
WP_012130130.1\|1876666_1877536_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005432612.1\|1877550_1878426_-	metal ABC transporter permease	NA	NA	NA	NA
WP_012130131.1\|1878425_1879160_-	metal ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	7.5e-11	26.4
WP_012130132.1\|1879159_1880095_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012130133.1\|1880157_1880709_-	hypothetical protein	NA	NA	NA	NA
WP_005432620.1\|1880705_1881026_-	hypothetical protein	NA	NA	NA	NA
WP_162471677.1\|1881070_1881907_-	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_012130135.1\|1881917_1882412_-	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_080514183.1\|1882479_1882971_-	PepSY-associated TM helix domain-containing protein	NA	NA	NA	NA
WP_012128517.1\|1883510_1884983_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.0e-131	50.4
WP_012130138.1\|1885406_1886252_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012130139.1\|1886424_1887597_-	hypothetical protein	NA	NA	NA	NA
WP_012130140.1\|1887593_1888214_-	energy transducer TonB	NA	NA	NA	NA
WP_005432634.1\|1888213_1888618_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_012130141.1\|1888614_1889169_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_012130142.1\|1889168_1890536_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_012130143.1\|1890536_1891304_-	DUF3450 domain-containing protein	NA	NA	NA	NA
WP_012130144.1\|1891379_1893452_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012130145.1\|1893658_1895032_-	sensor histidine kinase	NA	NA	NA	NA
WP_012130146.1\|1895031_1895697_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-26	35.2
WP_012130148.1\|1896110_1896821_+	glycerophosphoryl diester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	5.5e-11	30.1
WP_021018086.1\|1896846_1897329_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_021018085.1\|1897506_1898502_+	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	6.2e-69	42.1
WP_005530256.1\|1898586_1898943_+	YibL family ribosome-associated protein	NA	NA	NA	NA
WP_012130152.1\|1899158_1899851_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_012128611.1\|1900842_1902222_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.9e-49	27.2
WP_012130153.1\|1902437_1903514_+	hypothetical protein	NA	NA	NA	NA
WP_010645962.1\|1904730_1905180_-	effector binding domain-containing protein	NA	NA	NA	NA
WP_012130156.1\|1905298_1906453_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_079771085.1\|1906766_1906856_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_011999348.1\|1907507_1908701_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4

DBSCAN-SWA_16

1914541 : 1946601

Leptospira_phage(50.0%)

transposase,tRNA,integrase

attL 1926236:1926254|attR 1955601:1955619

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012130164.1\|1914541_1916086_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.0e-70	34.7
WP_012130165.1\|1916145_1916499_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.0e-14	43.5
WP_011999494.1\|1916495_1916807_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_048814461.1\|1918825_1920298_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.5e-130	49.6
WP_011998890.1\|1920213_1920411_-	hypothetical protein	NA	NA	NA	NA
WP_021018044.1\|1920571_1920853_+	hypothetical protein	NA	NA	NA	NA
WP_012128395.1\|1920839_1921046_+	hypothetical protein	NA	NA	NA	NA
WP_012128396.1\|1921129_1921561_+	regulatory protein RecX	NA	NA	NA	NA
WP_012130170.1\|1922219_1922996_-	M48 family metallopeptidase	NA	NA	NA	NA
1926236:1926254	attL	NA	NA	NA	NA
WP_012130173.1\|1926351_1927113_-	hypothetical protein	NA	NA	NA	NA
WP_021018081.1\|1927440_1928988_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.6e-84	38.3
WP_012130176.1\|1929007_1929949_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_021018080.1\|1929950_1930355_-	hypothetical protein	NA	NA	NA	NA
WP_012130178.1\|1930543_1931137_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012130179.1\|1931416_1931659_-	hypothetical protein	NA	NA	NA	NA
WP_021018079.1\|1932240_1932693_+	hypothetical protein	NA	NA	NA	NA
WP_012130182.1\|1932710_1933355_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_012130183.1\|1933351_1934272_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.6e-172	96.7
WP_021018078.1\|1934302_1935283_-\|integrase	site-specific integrase	Q76UT6	Pseudomonas_virus	2.9e-42	38.7
WP_011999494.1\|1935452_1935764_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|1935760_1936114_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021017813.1\|1936174_1937719_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_021018077.1\|1937869_1939129_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012130189.1\|1945318_1945843_-	DUF3087 domain-containing protein	NA	NA	NA	NA
WP_012130190.1\|1946001_1946601_+\|tRNA	tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY	NA	NA	NA	NA
1955601:1955619	attR	NA	NA	NA	NA

DBSCAN-SWA_17

1983636 : 2046858

Leptospira_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012130229.1\|1983636_1985181_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-70	34.7
WP_011998799.1\|1985240_1985594_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|1985590_1985902_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012130231.1\|1986270_1986762_+	VOC family protein	NA	NA	NA	NA
WP_021018074.1\|1987318_1988110_-	hypothetical protein	NA	NA	NA	NA
WP_005428402.1\|1989682_1990087_-	hypothetical protein	NA	NA	NA	NA
WP_012130238.1\|1990636_1990945_-	MliC family protein	NA	NA	NA	NA
WP_012130240.1\|1990941_1991403_-	ecotin family protein	NA	NA	NA	NA
WP_005428272.1\|1991604_1992024_+	VOC family protein	NA	NA	NA	NA
WP_005428362.1\|1992153_1992405_+	TIGR03643 family protein	NA	NA	NA	NA
WP_012130241.1\|1992442_1993162_-	hypothetical protein	NA	NA	NA	NA
WP_012130242.1\|1993687_1996378_-	alpha-glucosidase	NA	NA	NA	NA
WP_012130243.1\|1996638_1997406_-	transcriptional regulator	NA	NA	NA	NA
WP_011999114.1\|1998328_1999249_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-171	96.4
WP_012130247.1\|2000217_2000463_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_005434843.1\|2000549_2002037_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_005533107.1\|2002033_2003059_-	HlyD family secretion protein	NA	NA	NA	NA
WP_012130248.1\|2003353_2003995_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_012130250.1\|2004427_2005078_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_012130251.1\|2005086_2005398_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011999348.1\|2005548_2006742_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4
WP_005428450.1\|2007272_2007602_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_012130253.1\|2007618_2008233_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010645422.1\|2009701_2010142_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_021018071.1\|2010290_2010875_+	LysE family translocator	NA	NA	NA	NA
WP_041853501.1\|2011146_2013078_+	S9 family peptidase	NA	NA	NA	NA
WP_021018070.1\|2013401_2014292_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012130259.1\|2014425_2015496_+	HlyD family secretion protein	NA	NA	NA	NA
WP_012130260.1\|2015511_2016501_+	hypothetical protein	NA	NA	NA	NA
WP_041853580.1\|2017279_2018053_+	siderophore-interacting protein	NA	NA	NA	NA
WP_012130263.1\|2018127_2018997_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012130264.1\|2019065_2019578_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012130266.1\|2019945_2020761_-	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_005428461.1\|2021050_2022199_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	3.0e-35	28.9
WP_005428252.1\|2022403_2023243_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_012130267.1\|2023445_2023685_+	hypothetical protein	NA	NA	NA	NA
WP_005428270.1\|2023734_2024106_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_041853500.1\|2024387_2024852_+	oxidoreductase	NA	NA	NA	NA
WP_012130270.1\|2024848_2025940_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.8e-11	30.0
WP_012130271.1\|2025950_2026355_+	hypothetical protein	NA	NA	NA	NA
WP_012130272.1\|2026456_2027254_-	HAD family hydrolase	NA	NA	NA	NA
WP_021018067.1\|2027448_2029128_+	ribosomal large subunit pseudouridine synthase A	NA	NA	NA	NA
WP_012130274.1\|2029744_2031085_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012130275.1\|2031296_2032319_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010648031.1\|2032453_2033548_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	6.5e-19	32.4
WP_012130276.1\|2033547_2034897_-	beta-glucosidase	A0A0B5JD41	Pandoravirus	5.5e-68	34.2
WP_012130277.1\|2034920_2035805_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_012130278.1\|2035806_2036796_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_012130281.1\|2038129_2039134_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012128611.1\|2039478_2040858_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.9e-49	27.2
WP_012130283.1\|2040990_2042289_-	carbohydrate porin	NA	NA	NA	NA
WP_021017672.1\|2042562_2043606_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012130285.1\|2043833_2045018_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	6.6e-17	27.5
WP_005428352.1\|2045040_2045322_-	hypothetical protein	NA	NA	NA	NA
WP_011999278.1\|2045526_2046858_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

2053793 : 2090164

Leptospira_phage(54.55%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012130294.1\|2053793_2054978_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.9e-73	34.5
WP_012126528.1\|2055548_2056289_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.7e-48	43.2
WP_012127697.1\|2056299_2057832_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.9e-110	42.1
WP_012130296.1\|2058080_2059622_-\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.7e-26	40.1
WP_011998779.1\|2059681_2060035_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|2060031_2060343_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_048814462.1\|2063432_2064977_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.7e-71	34.2
WP_011998779.1\|2065037_2065391_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_011999494.1\|2065387_2065699_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_086028365.1\|2066854_2068389_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_162600502.1\|2068507_2068828_+	hypothetical protein	NA	NA	NA	NA
WP_012130306.1\|2068943_2069495_+	TniQ family protein	NA	NA	NA	NA
WP_011999494.1\|2069571_2069883_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011998779.1\|2069879_2070233_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.0e-15	44.6
WP_021018061.1\|2070293_2071838_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	7.8e-26	40.1
WP_012130309.1\|2072101_2072518_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012130311.1\|2073769_2074795_+	acyltransferase family protein	NA	NA	NA	NA
WP_012130312.1\|2075215_2076646_+	sodium:proton antiporter NhaD	NA	NA	NA	NA
WP_012130313.1\|2076672_2077068_-	GFA family protein	NA	NA	NA	NA
WP_012130315.1\|2077286_2077895_+	YitT family protein	NA	NA	NA	NA
WP_041853385.1\|2077949_2079260_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_012130316.1\|2079874_2080768_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010453583.1\|2080916_2081270_+	DUF413 domain-containing protein	NA	NA	NA	NA
WP_005531215.1\|2081416_2081668_-	DUF3081 domain-containing protein	NA	NA	NA	NA
WP_005531216.1\|2082042_2082843_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_021018371.1\|2082969_2083836_-	glycerol kinase	NA	NA	NA	NA
WP_021018370.1\|2083986_2085213_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_021018369.1\|2085661_2086033_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012130321.1\|2086029_2086887_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-12	27.5
WP_012130322.1\|2086886_2087717_+	membrane protein	NA	NA	NA	NA
WP_095211511.1\|2087813_2088851_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011999348.1\|2088970_2090164_+\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	1.3e-68	38.4

DBSCAN-SWA_19

2125106 : 2195084

Klosneuvirus(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012130358.1\|2125106_2126438_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012130359.1\|2126624_2128643_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_041853574.1\|2129089_2130769_+	DUF342 domain-containing protein	NA	NA	NA	NA
WP_012130361.1\|2130835_2131489_-	CatB-related O-acetyltransferase	A0A1V0SJ47	Klosneuvirus	2.8e-17	38.1
WP_012130362.1\|2131581_2132484_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012130363.1\|2132870_2133617_-	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_048814463.1\|2133768_2135394_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_048814464.1\|2135457_2135988_-	flavodoxin family protein	NA	NA	NA	NA
WP_012130366.1\|2136174_2136492_+	hypothetical protein	NA	NA	NA	NA
WP_144080970.1\|2136506_2136743_+	hypothetical protein	NA	NA	NA	NA
WP_021017672.1\|2136712_2137756_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_021018364.1\|2137994_2138315_-	hypothetical protein	NA	NA	NA	NA
WP_144080969.1\|2138672_2138987_-	hypothetical protein	NA	NA	NA	NA
WP_012130370.1\|2139006_2139321_-	hypothetical protein	NA	NA	NA	NA
WP_080514184.1\|2139325_2139664_-	hypothetical protein	NA	NA	NA	NA
WP_012130371.1\|2139686_2140013_-	hypothetical protein	NA	NA	NA	NA
WP_012130372.1\|2140028_2140361_-	hypothetical protein	NA	NA	NA	NA
WP_021018362.1\|2140368_2140719_-	hypothetical protein	NA	NA	NA	NA
WP_080514185.1\|2141091_2141457_-	hypothetical protein	NA	NA	NA	NA
WP_012130376.1\|2141460_2141838_-	hypothetical protein	NA	NA	NA	NA
WP_144080968.1\|2142208_2142550_-	hypothetical protein	NA	NA	NA	NA
WP_144080967.1\|2142596_2142944_-	hypothetical protein	NA	NA	NA	NA
WP_012130382.1\|2143712_2144078_+	hypothetical protein	NA	NA	NA	NA
WP_012130383.1\|2144107_2144419_+	hypothetical protein	NA	NA	NA	NA
WP_086028365.1\|2144440_2145975_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_144080966.1\|2153686_2154037_+	hypothetical protein	NA	NA	NA	NA
WP_021018357.1\|2154107_2154695_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_041853573.1\|2157208_2159122_-	EAL domain-containing protein	NA	NA	NA	NA
WP_012130390.1\|2159127_2159811_-	transglutaminase-like cysteine peptidase	NA	NA	NA	NA
WP_021018356.1\|2159924_2161316_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_012130392.1\|2161431_2162655_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012130393.1\|2162647_2164561_-	sensor histidine kinase	NA	NA	NA	NA
WP_012130394.1\|2164689_2165325_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_005428959.1\|2165393_2166113_-	helix-turn-helix transcriptional regulator	A2I306	Vibrio_virus	3.6e-34	40.6
WP_012130395.1\|2166883_2167696_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012130397.1\|2168096_2171228_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_012130398.1\|2171239_2171947_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA
WP_021018354.1\|2172084_2173578_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_021018353.1\|2173628_2174159_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005428980.1\|2174307_2174547_+	hypothetical protein	NA	NA	NA	NA
WP_012130401.1\|2174699_2175059_-	hypothetical protein	NA	NA	NA	NA
WP_012130402.1\|2175205_2175739_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041853697.1\|2176375_2177389_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_005449899.1\|2178445_2178922_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_012130407.1\|2179003_2179711_-	hypothetical protein	NA	NA	NA	NA
WP_012130409.1\|2180348_2182187_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-33	26.2
WP_021018351.1\|2182592_2183594_+	amidinotransferase	NA	NA	NA	NA
WP_095211508.1\|2187587_2188628_+	hypothetical protein	NA	NA	NA	NA
WP_021018350.1\|2188708_2188885_-	hypothetical protein	NA	NA	NA	NA
WP_012130416.1\|2189339_2189933_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_012130417.1\|2189984_2190380_-	hypothetical protein	NA	NA	NA	NA
WP_012127656.1\|2192568_2193612_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011999529.1\|2193890_2195084_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	5.7e-69	38.4

Anti-CRISPR protein detection

Acr_ID: NC_009784.1|WP_021018131.1|1630377_1631406_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_009784.1|WP_021018131.1|1630377_1631406_+|hypothetical-protein

1630377_1631406_+

342 aa aa

HTH_ARAC

Identity	Hit_domain_coverage
0.43529411764705883	1.0

1595504-1645443

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_009784_2	Orphan	2.1\|1605650\|31\|NC_009784\|CRISPRCasFinder	1605650-1605680	31	1604999-1605029	1

1. spacer 2.1|1605650|31|NC_009784|CRISPRCasFinder matches to NC_009784 position: 1604999-1605029, mismatch: 1

caccgccatccagcgagttcgacccgcgtcc	CRISPR spacer
caccgccatccagcgagtttgacccgcgtcc	Protospacer
*******************.***********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009777

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009783

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_009784

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information