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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_009786 Escherichia coli O139:H28 str. E24377A plasmid pETEC_80, complete sequence 0 crisprs RT 0 0 1 0
NC_009791 Escherichia coli O139:H28 str. E24377A plasmid pETEC_5, complete sequence 0 crisprs NA 0 0 0 0
NC_009788 Escherichia coli O139:H28 str. E24377A plasmid pETEC_73, complete sequence 0 crisprs RT 0 0 2 0
NC_009789 Escherichia coli O139:H28 str. E24377A plasmid pETEC_6, complete sequence 0 crisprs NA 0 0 0 0
NC_009801 Escherichia coli O139:H28 str. E24377A, complete sequence 5 crisprs DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK 1 27 13 1
NC_009790 Escherichia coli O139:H28 str. E24377A plasmid pETEC_74, complete sequence 0 crisprs RT 0 0 1 0
NC_009787 Escherichia coli O139:H28 str. E24377A plasmid pETEC_35, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_009801
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009801_1 825257-825396 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009801_2 975103-975251 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009801_3 3056470-3057231 TypeI-E I-E
12 spacers
cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009801_4 3082931-3084484 Unclear I-E
25 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_009801_5 4824702-4824851 Orphan NA
1 spacers
RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 NC_009801.1 2183242-2183273 1 0.969

1. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to position: 2183242-2183273, mismatch: 1, identity: 0.969

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
ttatttgaccttgttgataatcccacagatcc	Protospacer
***********.********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_009801_4 4.17|3083936|32|NC_009801|CRISPRCasFinder,CRT 3083936-3083967 32 NZ_CP014310 Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence 438664-438695 5 0.844
NC_009801_4 4.34|3083937|32|NC_009801|PILER-CR 3083937-3083968 32 NZ_CP014310 Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence 438664-438695 5 0.844
NC_009801_3 3.1|3056499|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056499-3056530 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NC_009801_3 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056560-3056591 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NC_009801_4 4.18|3083997|32|NC_009801|CRISPRCasFinder,CRT 3083997-3084028 32 MN508817 Yersinia phage JC221, partial genome 98983-99014 6 0.812
NC_009801_4 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT 3084119-3084150 32 NC_048766 Pantoea phage vB_PagM_AAM37, complete genome 4684-4715 6 0.812
NC_009801_4 4.35|3083998|32|NC_009801|PILER-CR 3083998-3084029 32 MN508817 Yersinia phage JC221, partial genome 98983-99014 6 0.812
NC_009801_4 4.37|3084120|32|NC_009801|PILER-CR 3084120-3084151 32 NC_048766 Pantoea phage vB_PagM_AAM37, complete genome 4684-4715 6 0.812
NC_009801_4 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT 3082960-3082991 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP039896 Rhizobium pusense strain CFBP5875 plasmid pAtCFBP5875, complete sequence 67127-67158 7 0.781
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP039896 Rhizobium pusense strain CFBP5875 plasmid pAtCFBP5875, complete sequence 87611-87642 7 0.781
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP039918 Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence 344025-344056 7 0.781
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP039913 Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence 74873-74904 7 0.781
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP048633 Rhizobium oryzihabitans strain M15 plasmid p1, complete sequence 86302-86333 7 0.781
NC_009801_4 4.3|3083082|32|NC_009801|CRISPRCasFinder,CRT 3083082-3083113 32 NC_031944 Synechococcus phage S-WAM1 isolate 0810PA09, complete genome 38079-38110 7 0.781
NC_009801_4 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT 3083265-3083296 32 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1028485-1028516 7 0.781
NC_009801_4 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT 3084119-3084150 32 MK095606 Pantoea phage vB_PagS_AAS23, complete genome 1556-1587 7 0.781
NC_009801_4 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT 3084119-3084150 32 MG732930 Enterobacter phage Ec_L1, complete genome 26019-26050 7 0.781
NC_009801_4 4.37|3084120|32|NC_009801|PILER-CR 3084120-3084151 32 MK095606 Pantoea phage vB_PagS_AAS23, complete genome 1556-1587 7 0.781
NC_009801_4 4.37|3084120|32|NC_009801|PILER-CR 3084120-3084151 32 MG732930 Enterobacter phage Ec_L1, complete genome 26019-26050 7 0.781
NC_009801_3 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056560-3056591 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 CP023013 Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence 1077804-1077835 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP023017 Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence 1081182-1081213 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP015851 Ralstonia solanacearum strain YC40-M plasmid, complete sequence 1264658-1264689 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP022783 Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence 1083481-1083512 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP022795 Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence 1080184-1080215 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 CP023015 Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence 909207-909238 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052077 Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence 1059848-1059879 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052079 Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052125 Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052123 Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052081 Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP052083 Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
NC_009801_4 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT 3082960-3082991 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
NC_009801_4 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT 3083021-3083052 32 NZ_CP020446 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed6, complete sequence 30777-30808 8 0.75
NC_009801_4 4.3|3083082|32|NC_009801|CRISPRCasFinder,CRT 3083082-3083113 32 MK249217 Blackfly microvirus SF02 isolate 168, complete genome 2110-2141 8 0.75
NC_009801_4 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT 3083265-3083296 32 KX752698 Mycobacterium phage Tonenili, complete genome 136893-136924 8 0.75
NC_009801_4 4.14|3083753|32|NC_009801|CRISPRCasFinder,CRT 3083753-3083784 32 MN695335 Synechococcus phage B23, complete genome 181731-181762 8 0.75
NC_009801_4 4.14|3083753|32|NC_009801|CRISPRCasFinder,CRT 3083753-3083784 32 MN695334 Synechococcus phage B3, complete genome 183220-183251 8 0.75
NC_009801_4 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT 3084119-3084150 32 JN022534 Xanthomonas phage vB_XveM_DIBBI, complete genome 4380-4411 8 0.75
NC_009801_4 4.31|3083754|32|NC_009801|PILER-CR 3083754-3083785 32 MN695335 Synechococcus phage B23, complete genome 181731-181762 8 0.75
NC_009801_4 4.31|3083754|32|NC_009801|PILER-CR 3083754-3083785 32 MN695334 Synechococcus phage B3, complete genome 183220-183251 8 0.75
NC_009801_4 4.37|3084120|32|NC_009801|PILER-CR 3084120-3084151 32 JN022534 Xanthomonas phage vB_XveM_DIBBI, complete genome 4380-4411 8 0.75
NC_009801_3 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056560-3056591 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP019604 Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence 45733-45764 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP025432 Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence 92571-92602 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 AY526908 Bordetella phage BMP-1, complete genome 4333-4364 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NC_005357 Bordetella phage BPP-1, complete genome 4333-4364 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 AY526909 Bordetella phage BIP-1, complete genome 4333-4364 9 0.719
NC_009801_4 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT 3082960-3082991 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
NC_009801_4 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT 3083265-3083296 32 NZ_CP039905 Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence 175988-176019 9 0.719
NC_009801_4 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT 3083265-3083296 32 NZ_CP039909 Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence 115836-115867 9 0.719
NC_009801_4 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT 3083265-3083296 32 NZ_LS974446 Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence 14981-15012 9 0.719
NC_009801_4 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT 3083326-3083357 32 MH807820 Dickeya phage Coodle, complete genome 4693-4724 9 0.719
NC_009801_4 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT 3083326-3083357 32 MT857002 Salmonella phage pSal-SNUABM-02, complete genome 39215-39246 9 0.719
NC_009801_4 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT 3083448-3083479 32 AP014303 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, *** SEQUENCING IN PROGRESS *** 4922-4953 9 0.719
NC_009801_4 4.11|3083570|32|NC_009801|CRISPRCasFinder,CRT 3083570-3083601 32 NC_048709 Vibrio phage YC, complete genome 59265-59296 9 0.719
NC_009801_4 4.23|3084302|32|NC_009801|CRISPRCasFinder,CRT 3084302-3084333 32 NC_014007 Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence 136152-136183 9 0.719
NC_009801_4 4.26|3083449|32|NC_009801|PILER-CR 3083449-3083480 32 AP014303 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, *** SEQUENCING IN PROGRESS *** 4922-4953 9 0.719
NC_009801_4 4.28|3083571|32|NC_009801|PILER-CR 3083571-3083602 32 NC_048709 Vibrio phage YC, complete genome 59265-59296 9 0.719
NC_009801_4 4.40|3084303|32|NC_009801|PILER-CR 3084303-3084334 32 NC_014007 Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence 136152-136183 9 0.719
NC_009801_3 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT 3056866-3056897 32 NZ_CP025433 Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence 97047-97078 10 0.688
NC_009801_4 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT 3082960-3082991 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
NC_009801_4 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT 3083326-3083357 32 NZ_CP014582 Burkholderia sp. OLGA172 plasmid pOLGA3, complete sequence 4000-4031 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 MT856905 Enterococcus phage vB_EfaM_A2, complete genome 20447-20478 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 MW004544 Enterococcus phage EFGrKN, complete genome 18980-19011 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 MN241318 Enterococcus phage PEf771, complete genome 101150-101181 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 NC_029009 Enterococcus phage EFDG1, complete genome 19024-19055 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 MH880817 Enterococcus phage EfV12-phi1, complete genome 21449-21480 10 0.688
NC_009801_4 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT 3083387-3083418 32 MN027503 Enterococcus phage vB_OCPT_Ben, complete genome 131391-131422 10 0.688
NC_009801_4 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT 3083448-3083479 32 MK250016 Prevotella phage Lak-A1, complete genome 348544-348575 10 0.688
NC_009801_4 4.24|3084363|32|NC_009801|CRISPRCasFinder,CRT 3084363-3084394 32 MK288021 Bacillus phage pW2, complete genome 47555-47586 10 0.688
NC_009801_4 4.25|3084424|32|NC_009801|CRISPRCasFinder,CRT 3084424-3084455 32 NZ_CP041190 Labrenzia sp. PHM005 plasmid p1BIR, complete sequence 371-402 10 0.688
NC_009801_4 4.26|3083449|32|NC_009801|PILER-CR 3083449-3083480 32 MK250016 Prevotella phage Lak-A1, complete genome 348544-348575 10 0.688
NC_009801_4 4.41|3084364|32|NC_009801|PILER-CR 3084364-3084395 32 MK288021 Bacillus phage pW2, complete genome 47555-47586 10 0.688
NC_009801_4 4.42|3084425|32|NC_009801|PILER-CR 3084425-3084456 32 NZ_CP041190 Labrenzia sp. PHM005 plasmid p1BIR, complete sequence 371-402 10 0.688
NC_009801_4 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT 3083448-3083479 32 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1997929-1997960 11 0.656
NC_009801_4 4.24|3084363|32|NC_009801|CRISPRCasFinder,CRT 3084363-3084394 32 MG592575 Vibrio phage 1.205.O._10N.222.51.A7, partial genome 42510-42541 11 0.656
NC_009801_4 4.26|3083449|32|NC_009801|PILER-CR 3083449-3083480 32 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1997929-1997960 11 0.656
NC_009801_4 4.41|3084364|32|NC_009801|PILER-CR 3084364-3084395 32 MG592575 Vibrio phage 1.205.O._10N.222.51.A7, partial genome 42510-42541 11 0.656

1. spacer 4.17|3083936|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.844

gctgtattgttattgaaagatcacctcgcccc	CRISPR spacer
gctgtcttgttattgaaaaatcacctctagcc	Protospacer
***** ************.********   **

2. spacer 4.34|3083937|32|NC_009801|PILER-CR matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.844

gctgtattgttattgaaagatcacctcgcccc	CRISPR spacer
gctgtcttgttattgaaaaatcacctctagcc	Protospacer
***** ************.********   **

3. spacer 3.1|3056499|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

4. spacer 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgggcgtaccgcatcgcggacaacaagctga	Protospacer
.** ******** **************..** 

5. spacer 4.18|3083997|32|NC_009801|CRISPRCasFinder,CRT matches to MN508817 (Yersinia phage JC221, partial genome) position: , mismatch: 6, identity: 0.812

ggtagacgctttcacttcaccggaaa-atgagc	CRISPR spacer
gaaagacgctttcacttcatcggaaagatcaa-	Protospacer
*. ****************.****** ** *. 

6. spacer 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT matches to NC_048766 (Pantoea phage vB_PagM_AAM37, complete genome) position: , mismatch: 6, identity: 0.812

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgcgcggtatccgccgtgatgaatcggtattc	Protospacer
 * *.* .* ******** **************

7. spacer 4.35|3083998|32|NC_009801|PILER-CR matches to MN508817 (Yersinia phage JC221, partial genome) position: , mismatch: 6, identity: 0.812

ggtagacgctttcacttcaccggaaa-atgagc	CRISPR spacer
gaaagacgctttcacttcatcggaaagatcaa-	Protospacer
*. ****************.****** ** *. 

8. spacer 4.37|3084120|32|NC_009801|PILER-CR matches to NC_048766 (Pantoea phage vB_PagM_AAM37, complete genome) position: , mismatch: 6, identity: 0.812

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgcgcggtatccgccgtgatgaatcggtattc	Protospacer
 * *.* .* ******** **************

9. spacer 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

10. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039896 (Rhizobium pusense strain CFBP5875 plasmid pAtCFBP5875, complete sequence) position: , mismatch: 7, identity: 0.781

-----gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
ggtcggtg-----tctttcccggcaatgccgaacttc	Protospacer
     ***     ***** * ****************

11. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039896 (Rhizobium pusense strain CFBP5875 plasmid pAtCFBP5875, complete sequence) position: , mismatch: 7, identity: 0.781

-----gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
ggtcggtg-----tctttcccggcaatgccgaacttc	Protospacer
     ***     ***** * ****************

12. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039918 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence) position: , mismatch: 7, identity: 0.781

-----gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
ggtcggtg-----tctttcccggcaatgccgaacttc	Protospacer
     ***     ***** * ****************

13. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 7, identity: 0.781

-----gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
ggtcggtg-----tctttcccggcaatgccgaacttc	Protospacer
     ***     ***** * ****************

14. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP048633 (Rhizobium oryzihabitans strain M15 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-----gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
ggtcggtg-----tctttcccggcaatgccgaacttc	Protospacer
     ***     ***** * ****************

15. spacer 4.3|3083082|32|NC_009801|CRISPRCasFinder,CRT matches to NC_031944 (Synechococcus phage S-WAM1 isolate 0810PA09, complete genome) position: , mismatch: 7, identity: 0.781

gacactgtaaaagagtgggtaaagcctgagaa	CRISPR spacer
gagaagttcaaagagtgggtaaagactcagaa	Protospacer
** *   * *************** ** ****

16. spacer 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.781

ataaac-tttccgccgatctcaagagcggcacg	CRISPR spacer
-caaacgacaccgccgatctcaagaacgccacg	Protospacer
 .****  . ***************.** ****

17. spacer 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT matches to MK095606 (Pantoea phage vB_PagS_AAS23, complete genome) position: , mismatch: 7, identity: 0.781

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgggcggtatccgccgttatgaatcggtaatc	Protospacer
 *  .* .* ******************** **

18. spacer 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT matches to MG732930 (Enterobacter phage Ec_L1, complete genome) position: , mismatch: 7, identity: 0.781

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgttatgaatcggtactc	Protospacer
  * * ..*  ********************.**

19. spacer 4.37|3084120|32|NC_009801|PILER-CR matches to MK095606 (Pantoea phage vB_PagS_AAS23, complete genome) position: , mismatch: 7, identity: 0.781

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgggcggtatccgccgttatgaatcggtaatc	Protospacer
 *  .* .* ******************** **

20. spacer 4.37|3084120|32|NC_009801|PILER-CR matches to MG732930 (Enterobacter phage Ec_L1, complete genome) position: , mismatch: 7, identity: 0.781

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgttatgaatcggtactc	Protospacer
  * * ..*  ********************.**

21. spacer 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgcgcctaccggatcgcggacaaccgcacgg	Protospacer
.***** ****************** .  .* 

22. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

23. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

24. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

25. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

26. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

27. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

28. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

29. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

30. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

31. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

32. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

33. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

34. spacer 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

35. spacer 4.2|3083021|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP020446 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

gtgacaaatctttgcgggcaatgccgaacttc	CRISPR spacer
gccgcgactctttgcgggcaatgtcgagcttt	Protospacer
*. .*.* ***************.***.***.

36. spacer 4.3|3083082|32|NC_009801|CRISPRCasFinder,CRT matches to MK249217 (Blackfly microvirus SF02 isolate 168, complete genome) position: , mismatch: 8, identity: 0.75

gacactgtaaaagagtgggtaaagcctgagaa	CRISPR spacer
gagatggtaaaagagtgggtcaagcgtgacct	Protospacer
** *. ************** **** ***   

37. spacer 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT matches to KX752698 (Mycobacterium phage Tonenili, complete genome) position: , mismatch: 8, identity: 0.75

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
acctgctttccgccaagctcaagagcggtgcg	Protospacer
*.  .*********.* ***********..**

38. spacer 4.14|3083753|32|NC_009801|CRISPRCasFinder,CRT matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 8, identity: 0.75

tgctc-cggagataacgaatataaaaatgacgc	CRISPR spacer
-gcacagggagaaaaagaatataaaaatgatct	Protospacer
 ** *  ***** ** **************. .

39. spacer 4.14|3083753|32|NC_009801|CRISPRCasFinder,CRT matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 8, identity: 0.75

tgctc-cggagataacgaatataaaaatgacgc	CRISPR spacer
-gcacagggagaaaaagaatataaaaatgatct	Protospacer
 ** *  ***** ** **************. .

40. spacer 4.20|3084119|32|NC_009801|CRISPRCasFinder,CRT matches to JN022534 (Xanthomonas phage vB_XveM_DIBBI, complete genome) position: , mismatch: 8, identity: 0.75

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgtgatgaatcggtactc	Protospacer
  * * ..*  ******** ***********.**

41. spacer 4.31|3083754|32|NC_009801|PILER-CR matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 8, identity: 0.75

tgctc-cggagataacgaatataaaaatgacgc	CRISPR spacer
-gcacagggagaaaaagaatataaaaatgatct	Protospacer
 ** *  ***** ** **************. .

42. spacer 4.31|3083754|32|NC_009801|PILER-CR matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 8, identity: 0.75

tgctc-cggagataacgaatataaaaatgacgc	CRISPR spacer
-gcacagggagaaaaagaatataaaaatgatct	Protospacer
 ** *  ***** ** **************. .

43. spacer 4.37|3084120|32|NC_009801|PILER-CR matches to JN022534 (Xanthomonas phage vB_XveM_DIBBI, complete genome) position: , mismatch: 8, identity: 0.75

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgtgatgaatcggtactc	Protospacer
  * * ..*  ******** ***********.**

44. spacer 3.2|3056560|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

acgcgcgtaccggatcgcggacaacaaattgc------	CRISPR spacer
tcgcgcggaccggatcgcggccaa------gccccgcg	Protospacer
 ****** ************ ***      **      

45. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
gcgcgacacgtccaggctgccacccgatgttg	Protospacer
 **    .*********** ********.** 

46. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtttg	Protospacer
 .*******.** ************ .  ** 

47. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

48. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

49. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

50. spacer 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

51. spacer 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.* 

52. spacer 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.* 

53. spacer 4.6|3083265|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_LS974446 (Rhizobium selenitireducens ATCC BAA-1503 isolate T2.30D-1.1_plasmid plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

ataaactttccgccgatctcaagagcggcacg	CRISPR spacer
gcggcctttccaccgatctcaagcgcggcgcc	Protospacer
.... ******.*********** *****.* 

54. spacer 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT matches to MH807820 (Dickeya phage Coodle, complete genome) position: , mismatch: 9, identity: 0.719

ctcaaaaaacttgaaatcaaaaccggtgaaga	CRISPR spacer
gtcaagaaagttgaaatcaaaaccgaagcccc	Protospacer
 ****.*** ***************. *    

55. spacer 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 9, identity: 0.719

ctcaaaaaacttgaaatcaaaaccggtgaaga	CRISPR spacer
gtcaagaaagttgaaatcaaaaccgaagcccc	Protospacer
 ****.*** ***************. *    

56. spacer 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT matches to AP014303 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcagcagctttatcaaccgcgacttcctcgcc	Protospacer
..* **** *************.**** . .*

57. spacer 4.11|3083570|32|NC_009801|CRISPRCasFinder,CRT matches to NC_048709 (Vibrio phage YC, complete genome) position: , mismatch: 9, identity: 0.719

gcggccccatgtcagagaataattctttctca	CRISPR spacer
ccatgcccatgtcagagaatatttccttatag	Protospacer
 *.  **************** ***.** * .

58. spacer 4.23|3084302|32|NC_009801|CRISPRCasFinder,CRT matches to NC_014007 (Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence) position: , mismatch: 9, identity: 0.719

cgagtagccaacgagcagggatttgtcggcag	CRISPR spacer
caggcgttcagcgagcagggatttggcggcac	Protospacer
*..*.. .**.************** ***** 

59. spacer 4.26|3083449|32|NC_009801|PILER-CR matches to AP014303 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S29-C153, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcagcagctttatcaaccgcgacttcctcgcc	Protospacer
..* **** *************.**** . .*

60. spacer 4.28|3083571|32|NC_009801|PILER-CR matches to NC_048709 (Vibrio phage YC, complete genome) position: , mismatch: 9, identity: 0.719

gcggccccatgtcagagaataattctttctca	CRISPR spacer
ccatgcccatgtcagagaatatttccttatag	Protospacer
 *.  **************** ***.** * .

61. spacer 4.40|3084303|32|NC_009801|PILER-CR matches to NC_014007 (Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence) position: , mismatch: 9, identity: 0.719

cgagtagccaacgagcagggatttgtcggcag	CRISPR spacer
caggcgttcagcgagcagggatttggcggcac	Protospacer
*..*.. .**.************** ***** 

62. spacer 3.7|3056866|32|NC_009801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 10, identity: 0.688

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtctg	Protospacer
 .*******.** ************ .  .* 

63. spacer 4.1|3082960|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******    

64. spacer 4.7|3083326|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP014582 (Burkholderia sp. OLGA172 plasmid pOLGA3, complete sequence) position: , mismatch: 10, identity: 0.688

ctcaaaaaacttgaaatcaaaaccggtgaaga	CRISPR spacer
tgcctcaaacttgaaaacaaaacccgtgatct	Protospacer
. *   ********** ******* ****   

65. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to MT856905 (Enterococcus phage vB_EfaM_A2, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgag	Protospacer
*. .******** ******** *****     

66. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to MW004544 (Enterococcus phage EFGrKN, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgag	Protospacer
*. .******** ******** *****     

67. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to MN241318 (Enterococcus phage PEf771, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgag	Protospacer
*. .******** ******** *****     

68. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to NC_029009 (Enterococcus phage EFDG1, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgaa	Protospacer
*. .******** ******** *****     

69. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to MH880817 (Enterococcus phage EfV12-phi1, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgag	Protospacer
*. .******** ******** *****     

70. spacer 4.8|3083387|32|NC_009801|CRISPRCasFinder,CRT matches to MN027503 (Enterococcus phage vB_OCPT_Ben, complete genome) position: , mismatch: 10, identity: 0.688

ttatttgacctcgttgataatcccacagatcc	CRISPR spacer
tctcttgacctccttgataataccacactgag	Protospacer
*. .******** ******** *****     

71. spacer 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.688

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
atatcatctttatcaaccgcgataagaaagta	Protospacer
****** * **************    .  * 

72. spacer 4.24|3084363|32|NC_009801|CRISPRCasFinder,CRT matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 10, identity: 0.688

tcagacatctacaactcaaacgccagttgagg	CRISPR spacer
tggaggttctacaactcaaccaccagttgata	Protospacer
* ...  ************ *.******** .

73. spacer 4.25|3084424|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP041190 (Labrenzia sp. PHM005 plasmid p1BIR, complete sequence) position: , mismatch: 10, identity: 0.688

ttttccgggatgtgcacctgtgcgccgggcaa	CRISPR spacer
atgatcggcatgtgctcctgtgcgccggaacg	Protospacer
 *  .*** ****** ************.  .

74. spacer 4.26|3083449|32|NC_009801|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.688

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
atatcatctttatcaaccgcgataagaaagta	Protospacer
****** * **************    .  * 

75. spacer 4.41|3084364|32|NC_009801|PILER-CR matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 10, identity: 0.688

tcagacatctacaactcaaacgccagttgagg	CRISPR spacer
tggaggttctacaactcaaccaccagttgata	Protospacer
* ...  ************ *.******** .

76. spacer 4.42|3084425|32|NC_009801|PILER-CR matches to NZ_CP041190 (Labrenzia sp. PHM005 plasmid p1BIR, complete sequence) position: , mismatch: 10, identity: 0.688

ttttccgggatgtgcacctgtgcgccgggcaa	CRISPR spacer
atgatcggcatgtgctcctgtgcgccggaacg	Protospacer
 *  .*** ****** ************.  .

77. spacer 4.9|3083448|32|NC_009801|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcgcttccgttatcatccgcgagttccgtcaa	Protospacer
.....  ******** ****** *******  

78. spacer 4.24|3084363|32|NC_009801|CRISPRCasFinder,CRT matches to MG592575 (Vibrio phage 1.205.O._10N.222.51.A7, partial genome) position: , mismatch: 11, identity: 0.656

tcagacatctacaactcaaacgccagttgagg	CRISPR spacer
cttgacatctaccactcaaacggcagcgtcac	Protospacer
.. ********* ********* ***.   . 

79. spacer 4.26|3083449|32|NC_009801|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

atatcagcgttatcaaccgcgatttccgtctc	CRISPR spacer
gcgcttccgttatcatccgcgagttccgtcaa	Protospacer
.....  ******** ****** *******  

80. spacer 4.41|3084364|32|NC_009801|PILER-CR matches to MG592575 (Vibrio phage 1.205.O._10N.222.51.A7, partial genome) position: , mismatch: 11, identity: 0.656

tcagacatctacaactcaaacgccagttgagg	CRISPR spacer
cttgacatctaccactcaaacggcagcgtcac	Protospacer
.. ********* ********* ***.   . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 197175 : 259502 51 Emiliania_huxleyi_virus(12.5%) transposase,protease,plate,tRNA NA
DBSCAN-SWA_2 826879 : 857434 45 Enterobacteria_phage(53.85%) tail,transposase,terminase,lysis,integrase attL 826792:826806|attR 855505:855519
DBSCAN-SWA_3 972263 : 1074413 86 Escherichia_phage(30.0%) protease,tail,transposase,plate,tRNA,integrase attL 959871:959886|attR 1032942:1032957
DBSCAN-SWA_4 1262111 : 1291367 39 Enterobacteria_phage(32.14%) tail,terminase,holin,lysis,integrase attL 1256338:1256352|attR 1263686:1263700
DBSCAN-SWA_5 1419323 : 1439074 28 Escherichia_phage(31.58%) NA NA
DBSCAN-SWA_6 1750166 : 1786502 43 Enterobacteria_phage(24.14%) tail,transposase,terminase,holin,lysis,integrase attL 1741863:1741876|attR 1781280:1781293
DBSCAN-SWA_7 2137537 : 2221208 98 Escherichia_phage(17.5%) tail,transposase,plate,integrase,terminase,capsid,head attL 2172918:2172977|attR 2221278:2221354
DBSCAN-SWA_8 2292511 : 2298819 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_9 2391478 : 2399787 9 Enterobacteria_phage(83.33%) NA NA
DBSCAN-SWA_10 3028074 : 3040113 8 Escherichia_phage(62.5%) integrase attL 3027047:3027060|attR 3046722:3046735
DBSCAN-SWA_11 3288735 : 3362993 59 Pseudomonas_phage(18.18%) transposase,protease,integrase,tRNA attL 3280947:3280961|attR 3329018:3329032
DBSCAN-SWA_12 3373400 : 3408159 26 Stx2-converting_phage(36.36%) transposase,integrase attL 3378189:3378203|attR 3408597:3408611
DBSCAN-SWA_13 4797211 : 4856442 49 Stx2-converting_phage(15.0%) transposase,protease,tRNA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_009801.1|WP_000844800.1|2154569_2154797_+|peroxide/acid-resistance-protein-YodD 2154569_2154797_+ 75 aa aa NA NA NA 2137537-2221208 yes
2. NC_009786
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4145 : 44444 47 Stx2-converting_phage(19.05%) transposase,integrase attL 28776:28793|attR 56166:56183
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_009788
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1721 2 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_2 5474 : 68293 56 Stx2-converting_phage(33.33%) transposase,integrase attL 6354:6368|attR 58031:58045
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NC_009790
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3513 : 66795 50 Stx2-converting_phage(41.67%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage