CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_010543	Crocosphaera subtropica ATCC 51142 plasmid D, complete sequence	0 crisprs	NA	0	0
NC_010541	Crocosphaera subtropica ATCC 51142 plasmid B, complete sequence	0 crisprs	NA	0	0
NC_010547	Crocosphaera subtropica ATCC 51142 chromosome linear, complete sequence	1 crisprs	csa3,Cas9_archaeal	0	1
NC_010546	Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence	12 crisprs	cas3,cas2,cas1,csx18,WYL,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,csm3gr7,RT,PD-DExK,c2c10_CAS-V-U3,cas6,cas8b3,cas7,cas5,DinG,cas14j,c2c9_V-U4,csa3,c2c5_V-U5	6	1
NC_010539	Crocosphaera subtropica ATCC 51142 plasmid A, complete sequence	0 crisprs	NA	0	0
NC_010542	Crocosphaera subtropica ATCC 51142 plasmid pC, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010547_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010547_1

329115-329267

Orphan

Consensus_repeat	Method
AGCACCACTAAGGTTGGCATAAGTAAAGTTAGC	PILER-CR

2 spacers

The CRISPR arrays of NC_010547_1

>merge|NC_010547|1|329115-329267|PILER-CR
AGCACCACTAAGGTTGGCATCACTAAAATTAGCCCCCCTAAGTAAAGCACAGTTGAGATCAGCACCACTAAGGTTGGCAGATGTCAGGTTAGCACGACTAAGATTGGCATATCTCAGACTAGCACCACTGAGGTTGGCATAAGTGAAGTTAGT

>NC_010547|1|1|329115-329267|PILER-CR
AGCACCACTAAGGTTGGCATCACTAAAATTAGC	CCCCCTAAGTAAAGCACAGTTGAGATC
AGCACCACTAAGGTTGGCAGATGTCAGGTTAGC	ACGACTAAGATTGGCATATCTCAGACT
AGCACCACTGAGGTTGGCATAAGTGAAGTTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010547.1\|WP_009547836.1\|323022_324543_+\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547837.1\|324619_325648_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_010547.1\|WP_009547856.1\|335010_335268_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547847.1\|330603_330786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226875
NC_010547.1\|WP_012362648.1\|335290_335917_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547840.1\|326432_326795_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225982
NC_010547.1\|WP_009547835.1\|322565_322802_-\|DUF4278-domain-containing-protein	unknown	unknown	gnl\|CDD\|372912
NC_010547.1\|WP_009547846.1\|329719_330517_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|214947
NC_010547.1\|WP_009547839.1\|326188_326440_+\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547842.1\|327271_327901_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547844.1\|328143_328890_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_010547.1\|WP_009547843.1\|327848_328064_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547841.1\|326864_327089_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547855.1\|334584_335007_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547854.1\|334093_334579_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_012362645.1\|331591_331732_+\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_009547838.1\|325644_326145_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010547.1\|WP_009547851.1\|331911_332685_-\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|260130
NC_010547.1\|WP_009547852.1\|333117_333555_-\|hypothetical-protein	unknown	unknown	unknown
NC_010547.1\|WP_012362646.1\|333588_334092_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010547.1\|WP_009547837.1\|324619_325648_+\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	1.6044e-10
NC_010547.1\|WP_009547844.1\|328143_328890_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.235e-15
NC_010547.1\|WP_009547838.1\|325644_326145_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.27915e-16
NC_010547.1\|WP_009547847.1\|330603_330786_-\|hypothetical-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	5.47e-07
NC_010547.1\|WP_009547851.1\|331911_332685_-\|UbiA-family-prenyltransferase	gnl\|CDD\|260130	cd13967, PT_UbiA_5, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	3.51877e-16
NC_010547.1\|WP_009547840.1\|326432_326795_+\|hypothetical-protein	gnl\|CDD\|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	0.00791755
NC_010547.1\|WP_009547835.1\|322565_322802_-\|DUF4278-domain-containing-protein	gnl\|CDD\|372912	pfam14105, DUF4278, Domain of unknown function (DUF4278). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 58 and 136 amino acids in length. There is a single completely conserved residue R that may be functionally important.	3.11044e-11
NC_010547.1\|WP_009547846.1\|329719_330517_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	0.0025864

>NC_010547.1|WP_009547844.1|328143_328890_-|ATP-binding-protein
MALACSKTFNRNYKQMLKTLTIENYRCFENFSINNLSKINLIVGQNNIGKTSLLEFINDLDNYNTLLLSTNDNYLENVEKIWDLIQLTPREDKVIEALQIINPDVEKIGLTISQYTKQIRLKIKGEDNPIPLSSMGEGMKKIFGLIIKAVILENGVLLIDEIERGLHYTAQTNMWRLLTKTAQELNVQIFATTHSWDCISAFIKALDNIEDKSFGKLFRLNNQSGKLRAVEYKSDEISIAVNQAIEVR
>NC_010547.1|WP_009547843.1|327848_328064_-|hypothetical-protein
MFKISKEWHGQEFKRDNKSKEFWFSRTDDEEGISFLAGSGTDINKITSEMCELVYACLCLDVCTRCTNLHK
>NC_010547.1|WP_009547842.1|327271_327901_-|hypothetical-protein
MLVYAWMYAQDARISISSTFQEMYEQAVRVYAQDEALWIESSNGVMDIPYTLEQLGEMFVEQSPPPSLNWLLKLGSSFCAIEYDEHNGREDWTFEFEHFHATFFPKSSQWELQIVKTGKEWCKPIKLPYKYDKKLSALVVSHYIENNLKGFAESWLLPLQDIKEYWCRDDCKDISKGSIIVISQLDYWKEEREAKINAGYHTAEYLCYY
>NC_010547.1|WP_009547841.1|326864_327089_-|hypothetical-protein
MFDNNNLVPILKDILEDHDLDFIIKLKSGDEDVFIELLANDELEIFLSEQRDGNPSDKDYEDFEQHIRDLIPNL
>NC_010547.1|WP_009547840.1|326432_326795_+|hypothetical-protein
MIKEITKLLVPYDSSPTECDGMTRICSTILTKEGIKHQPMLGSVVYKEKKIEPHFWINLANNYCIDYRLKMWFGKCNNIPHGIFKFKDFPQLKYQGIPVNCKSLSPEVLLILTLPFDEAI
>NC_010547.1|WP_009547839.1|326188_326440_+|hypothetical-protein
MRLTDDQLLEFYQNLKEASQQHRLSTPDYEVGQFLQGLIPHPTSGTMKVKGKVILENGDRYLEDEQGTTYPLSAMEGIEKSDD
>NC_010547.1|WP_009547838.1|325644_326145_-|Uma2-family-endonuclease
MLVDQLVFAWFSRHPDEKFSLLNRCQLEKPKTQAAAPDLMLYLRDDYPTCEAGQRRYINLAEVRVPDLVGEVGDTILATDLDEKKHFYAKLGIQEYWVIDVRGKRVIAFILGENGVYQEIEISQALKGLKLSLINQALERLETETNGMATIWFSQQVVNLLKDDSV
>NC_010547.1|WP_009547837.1|324619_325648_+|alpha/beta-hydrolase
MKTLPKLTFSLGLISLTLSSILIDSPVYGQSFSRYSVNSFMTTIESDETDIYYPQSSLEPLPMVVFLTGALVEKEEYTQFAQDLASYGFIVAISNHRQVIPAFNFDGQLPELSQITNTLNYFQQEHENSASPLFGKINLELLGAVGHSHGGGAVLQSTEGQCNFPFCTGTFQLPSELKAVIGYGMNRFNFFTNQFEVTNNQGIPVGFIQGSLDGIATPDEAINTFNLVQSPPKALITIDGANHYSITDSNNPLGANPDPQEATLNQLEANQLIAQWTAIFLLAHLENNSTAYNLIYRDTNTDSRVSIISQSVPEPTTTKGFILITILGLLGLIRVHLKSSVS
>NC_010547.1|WP_009547836.1|323022_324543_+|hypothetical-protein
MLLTHESQSLDMANGASVESEINVSPTNLALSTPQTTLEGTLANIPWTDGFTLGSGVDVIKGSLLGSALKSFTPNLNPIKTSSESYRFISDDSSLNLEIGVSASGIYNFNNIKITASTEFLTQITYSQTSITLIAEYSSLFGYSDQPINYQLTEKAQELAKNPGQFRQAYGDYFIADSQRGSRFLAVYVCETSSAESLVEFKASLGAEVPKVFSAEGSNRLMQAASEHHVSISTYLYPEGYTGTAPSGPWNPQTILEALKWFKANEKGENMKAELKHYSTIIHGYPRTIPVDSRIFVELSHLYNQLWDIRARYDSLPKYYQHQYKLPFNTLNLGIVSNQDTLVTNPTLRKSYQQQAQILKADLDDVVARRDFYFEVQESLKNNPEPPANHKINESKGVNKWLYGFDRYLKSDAVVIHTTVYNFRKGPKPAIHTQHTFEFGPESRYRIVGWEVVSNRIDGHNGSWRKIRSQILLTDYAGILVESGFDRAMNWSLIVHYVEAKDYQFE
>NC_010547.1|WP_009547835.1|322565_322802_-|DUF4278-domain-containing-protein
MQLSYRGCQYSKKAVVSSENNNIIQAKYRGISYIIGQNKSVVKQSSALLKYRGVPYSIGANCSVNKTEFKHRFNSAIA
>NC_010547.1|WP_009547846.1|329719_330517_-|GIY-YIG-nuclease-family-protein
MLFNQIQEPRIIEKFRSIERSILDKKDFIATQSTNQFFEQAIPKAKQEIQEKITDYQLYLLQYRRILSNSLYFLEIKADEEIYHKIGVTTRDLEQRIPEIKRDLAQYFSSVSIKGLGFWPHRGNVEYYFKHRYRKYNHRIGSLSKYFKFDNIKSVLRDLRRMKPKVLCDLEEIRFAVREKEILDNKPLDKVLLSLYIKHGMEKTKSFGFHVGRPKETESHEHFLAKPKNQAIATVLKKGYSIRRTAKQLGVAINTVRKVKAILEP
>NC_010547.1|WP_009547847.1|330603_330786_-|hypothetical-protein
MWLEYALNRDREYVSITEVPRGRSDLYCPYCQGELIAKKGKIKAHHFAHAGDTCNYVKNA
>NC_010547.1|WP_012362645.1|331591_331732_+|hypothetical-protein
MFILVGGSIMTTDFLPVILVLVVGWLLAATLGTWAYFANEKNTESN
>NC_010547.1|WP_009547851.1|331911_332685_-|UbiA-family-prenyltransferase
MNFRSIGTFIRDFLRYGNGIVIILAVLYTLLFYSLAEREPDSVVLVLTGLLGFLTYSYDRMHDLGEESDIINSLERTNWLRANYTFMVYLCAMAVVISLIAMLLRPAAIFPIISTIGLAFAYSLPILPDGKSLKKIPGVKTALIVVLWVILTFLIPMTVSGVHWSFQIIGGILYESLMIASIANLNDIRDTPGDRLAGVPTISVIFGVRIAFFFSLFTIIAATMVGVTLGNWVLVMLGVIGTIGLLFNSSQFLEMLR
>NC_010547.1|WP_009547852.1|333117_333555_-|hypothetical-protein
MSYYPVILIPDVLQQVQREPIAKPIKPTYPKRPQPLPRLPPEPQPFNIQLLIVQGIIGLGTALFLGLFLSLFNSTLGAFTISLGLVTLLLFSGFNLYFQKKTFPQRKQAHESLQQRYLLKLDKYAIALCFTCLRFSFTRSLYFAM
>NC_010547.1|WP_012362646.1|333588_334092_-|hypothetical-protein
MSITMLKQFLQDNTALFKHSKKNSNYKYKSFYELVLELGQEMKPARTSKELTGQRKNCYGNCQALAFMEPELTYCEGFAIPNTIDFPASHAWLLDKSGTVIEVTWEEPGRAYLGIAFSTTFIKSILKEREENKGSNYLSLLECNHLEGYSFLKYGFPNDAYANGIMG
>NC_010547.1|WP_009547854.1|334093_334579_-|hypothetical-protein
MYYGYRCYTNDNEALGWFYTTHKELELNWTTNPDLFYWCKRWKTKRGAEKNFDYYQRRWKSYRRERCGYLKIEIMPEVPSIDENSNRTSQQKWDAKNGKIIEESKAKYEQKNPIWSFRPPSELIEWLEEERWYTEDGKPETNSQLLIRKLNKLKNLECQSY
>NC_010547.1|WP_009547855.1|334584_335007_-|hypothetical-protein
MNTKLLQPGQQIGVAKQGRIMKASIHTIDKVTPTGQVVIGDKRFNNRGQIMGSNPFQDQERLISLEEAQAIIAEKEKRALEKKKKRDQQKTIARTATQKAFEVLNQHGYYADVDGHWEVMESEINELLIDYMKKHKPIKD
>NC_010547.1|WP_009547856.1|335010_335268_-|hypothetical-protein
MITISFRLPKQAGIRNRALVLRKLTNDPNANYSTCHEDLDSSLNDCYSQGHYFQTYDEALSDFQERCQKEFDFCQQIMFAYWQSK
>NC_010547.1|WP_012362648.1|335290_335917_-|hypothetical-protein
MSQKLMNLYVGQRILYRGDMVKIDMTGIISSITENEVCFWTDRDNDLRCVDVNGITPLPDMNFYIGQRILFSSDLGFECTGIITKILRDKIYFDSDNKNEGIHYGYISEITPLEEKIPYNKLFPNVTHEDVFEILKPFNQTGGNYGTTVTFYDRNSGHINFKIDGGEEWEVEFDSLSEAMGKAQEIINELNPEFQKVWNDWNTKDEKN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

306534 : 401934

102

Moraxella_phage(14.29%)

transposase,integrase

attL 365645:365683|attR 369358:369396

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009546165.1\|306534_308061_-\|transposase	IS5-like element ISCysp18 family transposase	NA	NA	NA	NA
WP_009546164.1\|308763_309156_+	hypothetical protein	NA	NA	NA	NA
WP_009546163.1\|309152_309569_-	hypothetical protein	NA	NA	NA	NA
WP_012362636.1\|309668_309887_-	hypothetical protein	NA	NA	NA	NA
WP_156922848.1\|310170_311222_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_009547830.1\|311576_312311_-	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	2.8e-10	28.4
WP_009547831.1\|312344_313112_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.0e-16	29.4
WP_009547832.1\|313278_314220_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009547833.1\|314328_315474_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_009547834.1\|316290_322509_-	calcium-binding protein	NA	NA	NA	NA
WP_009547835.1\|322565_322802_-	DUF4278 domain-containing protein	NA	NA	NA	NA
WP_009547836.1\|323022_324543_+	hypothetical protein	NA	NA	NA	NA
WP_009547837.1\|324619_325648_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_009547838.1\|325644_326145_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_009547839.1\|326188_326440_+	hypothetical protein	NA	NA	NA	NA
WP_009547840.1\|326432_326795_+	hypothetical protein	NA	NA	NA	NA
WP_009547841.1\|326864_327089_-	hypothetical protein	NA	NA	NA	NA
WP_009547842.1\|327271_327901_-	hypothetical protein	NA	NA	NA	NA
WP_009547843.1\|327848_328064_-	hypothetical protein	NA	NA	NA	NA
WP_009547844.1\|328143_328890_-	ATP-binding protein	NA	NA	NA	NA
WP_024750382.1\|328880_329699_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009547846.1\|329719_330517_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_009547847.1\|330603_330786_-	hypothetical protein	NA	NA	NA	NA
WP_012362645.1\|331591_331732_+	hypothetical protein	NA	NA	NA	NA
WP_009547851.1\|331911_332685_-	UbiA family prenyltransferase	NA	NA	NA	NA
WP_009547852.1\|333117_333555_-	hypothetical protein	NA	NA	NA	NA
WP_012362646.1\|333588_334092_-	hypothetical protein	NA	NA	NA	NA
WP_009547854.1\|334093_334579_-	hypothetical protein	NA	NA	NA	NA
WP_009547855.1\|334584_335007_-	hypothetical protein	NA	NA	NA	NA
WP_009547856.1\|335010_335268_-	hypothetical protein	NA	NA	NA	NA
WP_012362648.1\|335290_335917_-	hypothetical protein	NA	NA	NA	NA
WP_009547858.1\|335927_336380_-	hypothetical protein	A0A0R6PKN1	Moraxella_phage	2.5e-17	36.1
WP_009547859.1\|336407_336938_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1L2BX36	Bacteriophage	1.1e-19	39.6
WP_009544806.1\|337150_337618_-\|transposase	transposase	NA	NA	NA	NA
WP_009544805.1\|337655_338195_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_162013552.1\|338258_338420_+	hypothetical protein	NA	NA	NA	NA
WP_009548001.1\|338425_338977_-	hypothetical protein	NA	NA	NA	NA
WP_156922878.1\|339388_340252_+	phosphodiester glycosidase family protein	NA	NA	NA	NA
WP_009547999.1\|340281_340497_-	hypothetical protein	NA	NA	NA	NA
WP_009547998.1\|340493_341069_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_009547997.1\|341098_341767_+	hypothetical protein	NA	NA	NA	NA
WP_009547996.1\|341763_342192_-	hypothetical protein	NA	NA	NA	NA
WP_009547995.1\|342205_342964_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_009547994.1\|343117_343645_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_009547993.1\|343619_344015_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_009547991.1\|344509_344698_+	hypothetical protein	NA	NA	NA	NA
WP_009547990.1\|344862_345273_+	DUF4087 domain-containing protein	NA	NA	NA	NA
WP_009547989.1\|345272_345860_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012362651.1\|345889_346285_+	hypothetical protein	NA	NA	NA	NA
WP_009544806.1\|346331_346799_-\|transposase	transposase	NA	NA	NA	NA
WP_009544805.1\|346836_347376_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_009548026.1\|347477_347831_-	hypothetical protein	NA	NA	NA	NA
WP_009548027.1\|347984_348566_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009548028.1\|348559_349318_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.9e-15	40.7
WP_009545072.1\|349636_350857_+\|transposase	ISAs1-like element ISCysp6 family transposase	NA	NA	NA	NA
WP_009547518.1\|350849_351191_-	hypothetical protein	NA	NA	NA	NA
WP_009547519.1\|351350_351560_+	hypothetical protein	NA	NA	NA	NA
WP_009547520.1\|351593_352097_+	hypothetical protein	NA	NA	NA	NA
WP_156922871.1\|352107_352725_-	hypothetical protein	NA	NA	NA	NA
WP_009547522.1\|352702_354226_-	hypothetical protein	NA	NA	NA	NA
WP_009547523.1\|354638_355667_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_009547524.1\|355725_356838_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_024750385.1\|356925_357375_-	PIN domain-containing protein	NA	NA	NA	NA
WP_009547526.1\|357374_357611_-	hypothetical protein	NA	NA	NA	NA
WP_009547527.1\|357657_358143_-	hypothetical protein	NA	NA	NA	NA
WP_009547528.1\|358269_358806_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_009547529.1\|358919_360191_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_009547530.1\|360431_361367_-	ATP-binding protein	NA	NA	NA	NA
WP_009547531.1\|361648_362038_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	5.0e-06	36.0
WP_009547533.1\|364723_364939_-	hypothetical protein	NA	NA	NA	NA
WP_009547534.1\|365077_365710_+	putative Ig domain-containing protein	NA	NA	NA	NA
365645:365683	attL	NA	NA	NA	NA
WP_009547535.1\|365687_366284_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.6e-32	38.8
WP_009547536.1\|366383_369035_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	6.4e-137	35.1
WP_009547537.1\|368994_369357_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	2.9e-16	41.9
WP_009547539.1\|370358_370856_-	DUF3997 domain-containing protein	NA	NA	NA	NA
369358:369396	attR	NA	NA	NA	NA
WP_012362661.1\|370908_371352_-	hypothetical protein	NA	NA	NA	NA
WP_012362662.1\|371540_372503_-	CHAD domain-containing protein	NA	NA	NA	NA
WP_009547542.1\|372609_372813_-	hypothetical protein	NA	NA	NA	NA
WP_012362663.1\|373089_373242_+	hypothetical protein	NA	NA	NA	NA
WP_083765764.1\|373328_373517_+	6-phosphofructokinase	NA	NA	NA	NA
WP_009547543.1\|373885_374071_+	hypothetical protein	NA	NA	NA	NA
WP_024750387.1\|374936_375302_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_009547546.1\|375430_375742_-	hypothetical protein	NA	NA	NA	NA
WP_009547547.1\|375891_378093_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_009547548.1\|378103_378352_+	hypothetical protein	NA	NA	NA	NA
WP_009547549.1\|378404_379100_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_009547550.1\|379106_380534_-	pyruvate kinase	NA	NA	NA	NA
WP_009547551.1\|380565_382140_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_009547552.1\|382233_383508_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	9.9e-136	57.7
WP_009547553.1\|383904_385188_-	hypothetical protein	NA	NA	NA	NA
WP_009547554.1\|385222_386794_-	VWA domain-containing protein	NA	NA	NA	NA
WP_009547555.1\|386853_388695_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_024750388.1\|388878_390102_+	acetate kinase	NA	NA	NA	NA
WP_009547557.1\|390264_392673_+	phosphoketolase family protein	NA	NA	NA	NA
WP_009547558.1\|392748_392943_-	hypothetical protein	NA	NA	NA	NA
WP_009547559.1\|393305_395828_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	9.7e-18	49.4
WP_009547560.1\|395922_396918_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_009547561.1\|396997_398623_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_009547562.1\|398729_399557_+	phosphate ABC transporter ATP-binding protein	A0A2H4UU96	Bodo_saltans_virus	8.1e-14	28.1
WP_009547563.1\|399604_400396_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-17	31.8
WP_009547564.1\|400428_400758_+	glycoside hydrolase family 13	NA	NA	NA	NA
WP_076611616.1\|400794_401934_+\|transposase	IS3-like element ISCysp23 family transposase	Q716C2	Shigella_phage	2.7e-23	29.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010546_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_1

344970-345075

TypeIII

Consensus_repeat	Method
TTCAACTAAGTTCTCTTATTAAAAGAGAG	CRISPRCasFinder

1 spacers

cas2,cas1,csx18,WYL,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_010546_1

>merge|NC_010546|1|344970-345075|CRISPRCasFinder
TTCAACTAAGTTCTCTTATTAAAAGAGAGTTAATCAAAAGACTAGAAAAGATAGAGGAGGATCTTTATAAGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG

>NC_010546|1|1|344970-345075|CRISPRCasFinder
TTCAACTAAGTTCTCTTATTAAAAGAGAG	TTAATCAAAAGACTAGAAAAGATAGAGGAGGATCTTTATAAGTTTCCA
TTCAACTAAGTTCTCTTATAAAAAGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009546830.1\|339608_340028_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NC_010546.1\|WP_009546835.1\|344030_344384_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546831.1\|340150_341434_+\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NC_010546.1\|WP_009546827.1\|336352_337516_+\|NDP-sugar-synthase	unknown	unknown	gnl\|CDD\|224129
NC_010546.1\|WP_009546841.1\|348516_351600_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_010546.1\|WP_009546846.1\|355544_356087_+\|hypothetical-protein	cmr5gr11	mkCas0205_cmr5gr11_CAS-III-B	unknown
NC_010546.1\|WP_009546833.1\|342963_343623_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NC_010546.1\|WP_009546829.1\|338767_339460_-\|acylneuraminate-cytidylyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133006
NC_010546.1\|WP_049769507.1\|345338_345641_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010546.1\|WP_009546842.1\|351606_352155_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010546.1\|WP_009546838.1\|345717_346710_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_010546.1\|WP_009546832.1\|342028_342874_+\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
NC_010546.1\|WP_009546834.1\|343799_343946_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_010546.1\|WP_009546840.1\|347164_348370_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_010546.1\|WP_009546828.1\|337512_338754_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274604
NC_010546.1\|WP_009546839.1\|346706_346994_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_010546.1\|WP_009546844.1\|353332_354637_+\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|312974
NC_010546.1\|WP_009546843.1\|352157_353348_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_010546.1\|WP_009546836.1\|344624_344912_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546845.1\|354641_355535_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009546830.1\|339608_340028_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	2.8756e-61
NC_010546.1\|WP_009546842.1\|351606_352155_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.7555e-33
NC_010546.1\|WP_009546831.1\|340150_341434_+\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	2.07162e-132
NC_010546.1\|WP_009546827.1\|336352_337516_+\|NDP-sugar-synthase	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	5.97783e-105
NC_010546.1\|WP_009546841.1\|348516_351600_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	2.45815e-41
NC_010546.1\|WP_009546840.1\|347164_348370_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	4.97239e-15
NC_010546.1\|WP_009546829.1\|338767_339460_-\|acylneuraminate-cytidylyltransferase-family-protein	gnl\|CDD\|133006	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.	5.07558e-103
NC_010546.1\|WP_049769507.1\|345338_345641_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.92263e-31
NC_010546.1\|WP_009546832.1\|342028_342874_+\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	1.09866e-59
NC_010546.1\|WP_009546834.1\|343799_343946_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.26503e-10
NC_010546.1\|WP_009546833.1\|342963_343623_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	1.10852e-79
NC_010546.1\|WP_009546828.1\|337512_338754_-\|hypothetical-protein	gnl\|CDD\|274604	TIGR03492, TIGR03492, conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.	3.37281e-177
NC_010546.1\|WP_009546844.1\|353332_354637_+\|hypothetical-protein	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.67029e-08
NC_010546.1\|WP_009546843.1\|352157_353348_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.42778e-72
NC_010546.1\|WP_009546838.1\|345717_346710_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.57617e-114
NC_010546.1\|WP_009546845.1\|354641_355535_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.02747e-26

>NC_010546.1|WP_009546836.1|344624_344912_+|hypothetical-protein
MTPEERLSQIEALFETAARYTVRHEEAISRNEEAIARHEETLTRLDEQIIQTNLRMAELAEIVRELGQYQRESSQRIDQIWEYLMRQNGNGRGSN
>NC_010546.1|WP_009546835.1|344030_344384_-|hypothetical-protein
MIDPILRKTFGGLSLDYYFRHLIFSLFLTILFIFSVEEYSIELFAFSFFNTFLYPYSRFAYRSSINYLTGNEGLIINPFLILVIKFFTMLLCWSLALFIAPMGLLFLFLYHSQQAKS
>NC_010546.1|WP_009546834.1|343799_343946_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MDQVNYRQIKENLPDIMEKVCNNHQPIIITRDHDQPVVLMSLADFSSY
>NC_010546.1|WP_009546833.1|342963_343623_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MTNFAINVDNVSFSWHENAQVLKSCSLAVPEGEFWMLLGANGSGKSTLLRLLTNLLTPQTGTITMTPPVGFVFQNPDRQLVMPTVGADIAFGLVEEKLPPLEVRYRVREALTAVNLLELERRPIYALSGGQKQRIAIAGAIARHCSVLLLDEPTALLDADTQIELVEQVQNLVKSRGITALWVTHRLEELNYCDGAFLLEGGKVVQQGDPQLIKKKISH
>NC_010546.1|WP_009546832.1|342028_342874_+|prohibitin-family-protein
MTRQSTPSLQPLIGGIIAALLVVISFNSFVVINPGQAGVLSILGKAQDGALLEGIHFKPPLVSAVDVYDVTVQKFEVPAQSATKDLQDLSASFAINFRLDPVQVVTIRRTQGTLQNIVSKIVAPQTQESFKIAAAKRTVEQAITQRSELKEDFDNALNSRLEKYGIIVLDTSVIDLNFSPEFAKAVEDKQIAEQKAQRAVYIAQEAEQEAQADINRAKGKAEAQRLLAETLKAQGGELVLQKEAIEAWKEGGAQMPKVLVMGGESNSSVPFLFNFGDLATQ
>NC_010546.1|WP_009546831.1|340150_341434_+|glycoside-hydrolase-family-10-protein
MKQNLFDKSANSLVKFSRRWGRQSWVIFLVLFGIYLTFIPFTFPFSAQSRNQPAEIRGVWLTNIDSEVLFNSQTLTEGINTLSELNFNTLYPTVWNWGYTLYPSQVAKSVVGKELDPTEGLQGRDILKEIVKQGHDKGMSVIPWFEFGFMAPADSELAKRHQDWLTKRQDDSTVWVEGNVHDRVWLSPFNPEVQEFLTNLLVEIVTNYDIDGIQVDDHFGIPFDFGYDDVTVELYQQEHNGKMPPNTPSYLKMGSNNCLAQDTAWTEWTEWRNNKITEYMGEVFAAVKAVKPDIIVSVSPNPQTFSKNCFLLDWQSWERKGLIEELVLQVYRQNMVDFEREINQPEVRQAKAHIPFAVGVLSGLKGRPVPMQRINDQVKATRNQKFAGVSFFFYESLWNFGPKSSNERQFMFKQMFPTTVSRPLSKG
>NC_010546.1|WP_009546830.1|339608_340028_+|YjbQ-family-protein
MNYYQQSLTIKTRGKDFHRITRDVENVVNQSGIETGLCTIFVRHTSASLIIQENADPDVLTDLSHFFSKLVPEDSKLYVHSTEGPDDMPAHIRSMLTKTSEQIPISQGRLVLGTWQGIYLWEHRQRSHQRQVVVHINGE
>NC_010546.1|WP_009546829.1|338767_339460_-|acylneuraminate-cytidylyltransferase-family-protein
MTIIAIIPARGGSKGVPRKNVRPLAGKPLIAHSIEDAQESSLIDQVYVSTDDQEIATVSAQYGAKIIDRPVELANDTASSESALIHAIAALEKQNIKPDLVVFLQCTSPIRTGADIDQAIAKLNAQQADSLLSVSPSHRFLWEELNGLAKSINYDYRHRPRRQDMNPQYVENGSIYVFKPWVLKKTQNRLGGKISLYVMSEMAALEIDTIDDFRMIECLTGNREQETGNR
>NC_010546.1|WP_009546828.1|337512_338754_-|hypothetical-protein
MEILVISNGHGEDVIALSIIDALKKFPNVSKIVALPLVGTGYAYEKANIPIIGTVKTMPSGGFNQDINQLWRDLNGGLLSLTYHQYQTIRKWGKKGGKLLAVGDILPLLFAWLSGGEFAFVGTAKSEYYLRDEKGWLTSTSLVERWLGSMYFPWERWLMRRLACRGIFVRDNLTAQILQKWSLPVYDLGNPMMDQFSVNPSVTFPCESEPLIILLLPGSRMPEAQHNWQLILEGVHSVIEAFKERSLLFLAAITPSFNTVPFQEDLIDKGWQKELDRTYPLSIQDPQSILFTHRNATLMISQQAYHDCLQVAHVGIAMAGTATEQFVGLGKPVITFPGEGPQFTQKFAQNQTRLLGCSVTLVNTPQQVGTTLKQLMNDPKQLQNIAKNGQQRLGQPGAAQRIAHCLINECFTN
>NC_010546.1|WP_009546827.1|336352_337516_+|NDP-sugar-synthase
MKAMILAAGKGTRVRPITHTIPKPLIPILQKPVMEFLLELLRKHGFDQIMVNVSHLAEEIESYFRDGQRFGVQIAYSFEGKIVDGDLVGEALGSAGGLRRIQDFNPFFDDTFIVLCGDALIDLDLTAAVKCHKEKGAIATIITKSVPKEVVSSYGVVVTDEEGRIKAFQEKPSVDEALSTKINTGIYIFEPEIINYIPPNQKYDIGGELFPRLVEKGAPFYAVNMDFEWVDIGKVPDYWHAIRGVLQREIKNVQIPGIEVKPGIYTGLNVAVNWDKVNIQGPVYIGGMTHIEDGATIIGPSMIGPNCWICSGATVDNSVIFEYSRLGPGVRLVDKLVFGRYCVDKTGAAIDVQAAALDWLITDSRQSFPHEDQVQQKAIAELLNQDR
>NC_010546.1|WP_049769507.1|345338_345641_-|CRISPR-associated-endonuclease-Cas2
MTHTGQKIDVFYVVTYDIVCDRRRKKVSDLLEGYGQRVQYSVFECVLTKAQYKQLCTRMKERVNLDEDSIRFYPISDHTLGQVELWGGKDLTKPPSSTIV
>NC_010546.1|WP_009546838.1|345717_346710_-|CRISPR-associated-endonuclease-Cas1
MKTLYVSQQGCYVKLDQETLKVEKKRQLLAEIQLPLIEQVLIFGKSQMTTQAIRACLWRNIPIVYLSRMGYCYGRIMSLKRGYRHLTRYQQQLDFSQRLLTARELVKAKLKNCRVILQRQQRRLQSDKLLFAIDSLNYLIEQANLAETIERLMGFEGVGASTYFSAFGDCLTPSEFIFLARSRRPPGNPVNAMLSFGYQVLWNHLLALIELQGLDPYQACLHQGSERHAALASDLIEEFRAPMVDSLVLYLVNRRIMNADDDFEYHDGGCYLNNTGRKKYLKHFVQRMEETVQTTPDEKQPRWDLLMQQVKRYKAFVYSPAYGYQPYLIR
>NC_010546.1|WP_009546839.1|346706_346994_-|hypothetical-protein
MYISKRAAFVRNIAASAINCIVTLTLLLIAPLGLAAVITNTFLVTFSTFIVCSICDFIIVWLSFSPPPKRIIHQSGNLTRWQQSQQIERKNIDKE
>NC_010546.1|WP_009546840.1|347164_348370_+|WYL-domain-containing-protein
MKNKFKPHRYSDLESFERLLLLIAILVKYPGVGYRDRNLLDTTEIHYNALEEVKFYLQKLADQLGIDLPEDYPAITTLRKDLETLKDYQILEKRMYRWGYYLGTGVMSPLELKIALDALESLAIKQGDPRIRKITEQFKKRLRGFAALEDQQLFYPVRQQLNHAINYTDPDEMMEKGVYRQTLFHHIHILETAIIEGQIIEISRKKDLYDNKRVGIMKVYPLQLIYHNVAWYLLHEDYKNEHLVISRVNRLGNYCKILEPSGRGINKQKQSLTKAYQLLENGWGLKLGNLEEQKQELAGKLNFVKAKVRFFYPVSQFIEEGERRHPKQKIKRGKIDPQTHQPQYIDYSVALPLRSLDEFYFWLNSYGEYVQVLAPSELVERHQRSALTLVSRYGCNKDNIT
>NC_010546.1|WP_009546841.1|348516_351600_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSHLYHPYWQAKIWALLHDPALKPLSDRYGFAREGQWQLLRCMQGCKSPKDNKKVLGDCVLQGNWLNHVGLCDLVASASDRSTIGRLDPQYSAVTYQQQTGLQIRHLLSGEPQNLKVNNNWQENLITKRKKLEAKEAEFLDKISQWEDPKKVFWALWRCYAEVLEKEEALIHLLPAETRLPDGSLWSHVSMTSALAGGLAGYYKQAENYPIKNQKFNDYSRPYLVNFTFSPVQELIKASRKMRDFWAGSWILHYLSAKVSYAIANEYGPDTLLYPCLYQQPLIDNWLLEEYSDFKEWIEPHKPDQLLTAGFPNVIIMILPNNHKSQQDLKDNPIYAATQLAKRTLKEEWKKLGDQSLEFLQDSKQWQNINPNTWDKWLKCQWQTYYTAFPIGDPESDLTCSLRVGKNETEEQKKDAFEAWCHQQNQLTNPKESLFETNEEKFLKAIFKLTDIETEKEPPKTKYSKQPNLNVGSWWAYVFDQLRTSLNAVKNARTWELPTAFTVRSSLSGIGSAVHPIVNEEKPDRISEKEINEFWSEKFGLFDGTEKLNATEIVKRVLHKLLPEILNYEEQEISLYYPDLTAGVAGYLKNALLNNQQSEIDYYKRSCHKIYKEIQPLLDNDNLSQSWGIPWINNNKELKLSNTIHHPRLLNAGWLLEDVEISHDSNIEYREKLEELSTKRTTIQQVINKYYPSNNPTNWYILVAGDGDSMRDWLRGSKLKNYGEYLPDELREKIINDSNDEIPKEYKEPLQNFLEVRKRMGPSTHSALSRALLDFSNQLVPYLTEQRYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRQCFKGQEDPYNEFKNEGDYWQWNKPNKPKNIAQRPLFTMGKCATISFGIVIAHHSIPLAIALESLWEAEEEAKEHYTQKDNKDTYKDAVQVRVLYGNGNTLKSTSKFDIFNQWKQLLKLDLEPSLFEQAATIWEQHPIPDKSAIEPWTKAFCSRRDIGEELQQDYQKILTSFIQGLWITTPQNNLDKEVKNWLKLAAFVKRNRKISLNQE
>NC_010546.1|WP_009546842.1|351606_352155_+|Uma2-family-endonuclease
MQLITRKFNVNEYHKMAETGILTPEDRVELIKGEIIAMSPIGRKHAATVNRLNQLLCQKFYNKVIVSVQNSIRLDNYSEPQPDIVLLKPRSDFYESKIPEPEDIYLLIEVADSTIKYDQDVKLPLYAESKISEVWIVNLNNKTLEVYRQPQNKTYVEQKKNVQSISPIAFPETTLTINDIFS
>NC_010546.1|WP_009546843.1|352157_353348_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MYWYTLTPTDVLMLRDAKPFSPQERAWAGSVFPPNGHTIAGALRGLLGTKDNFKLKGVFFVKETPRQDTNNPEFTLYFPSPLGFVGNKPLIPLNWDKSLSLNYIFWDQTKPCPLTTKKPDYQEDKLDKKYRKYLPYEAILNYLQDSKFQEGDLLQLNDEPETPWKIETRSHNSIETNTKQVKDADGYFVENAIRMLPGWHLAIAIDQLTHENIENLSNKSEKLLTLRLGGEGHRVILQRCESLDTQWNQLKEISNNNFKNDQKAIAYLVTPGVFEKHHNGQAICKPYPWEWKLAHTINGNQKSGDLVSVATAKAVPISCRIRDKNDQNKSIPAPQVFAVPPGTQYYLNQPCYLFADPHNPDTQHLKENQEKQAYHKAKRLLELGYSELFWIKWENH
>NC_010546.1|WP_009546844.1|353332_354637_+|hypothetical-protein
MGESLIMASIVLSFVGNQDPASETTNQEGSIITLIRHLIKLNSKIRKVILLYTEDTKDNAILTKEWLQQDDFKISTNQIELIAVSSNLSDDPVDVKLATQEANKGLKQAKNYRKDNDIFEFNSSSGTPSMKTAWGILQASSYGINSRLWQVRNPKKIQPSQELVFENNVNVFKDESNFSVIKKQLQNYNYSGAIESLNNSDLDSKISHNLMEYGYYRLAFDFQSAREVIQPYQEEISQELIKNINDLYNENILELLQEVYYKGIIKIKNKQYADFLVLLFSFQENILKFLVKQQILKDTSQPLHWKVAKEKINYQLQKGELNEYLKNYSYDGRSLKLNGDINRIVMLAILDYFSQLDNHLSQITLLLKQLENYCQIRNELVHDIKRVSELENESEIIKTMREILILTKPNFQTVNPFNLLNEQIVKQLTPLVRG
>NC_010546.1|WP_009546845.1|354641_355535_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKDFRLNYLYSLSPIHCGGEGDLGNILEIAREVHTNFPYIPGSSIRGSIRNEVDIINSDATNKLFGKELDDDGNMGVHQVWFGDARLLWVPMKTMSFNGNQDIFTWVSCHSLIRDHAIISNLPFVTFPNEAVGTNAGTYEVADAQIKVLKITPDQEKTITFLGEFPDSLKDSVKPTWESNHIVLPDADFQVLMEHSLWTQVRNKISDGTKEDTEAGSAEVFWTDVCIPRDTIFYLPWGYSLSKIDPISTDEHNKLMEVIQGLIQVGGQANVGRGWVQSWVSHSTFEFNKQEQQLTNV
>NC_010546.1|WP_009546846.1|355544_356087_+|hypothetical-protein
MAKKNKLSQFPRGKKTVSANTNVTATPPKYNANNTKSELKISQATITNSKKVQPEQMSLFAHAAIQVYIEKKGEKSLDKEDLNAVLRLSQHLRIFGLLSAVGYINQTNEQEGKVRKRTVPVWHCLLGYLIAPSENLDTKDLMEKVINLTKNEPQQYMSMWRKSLLLAPHWNFWARAYSKD

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Crispr_ID: NC_010546_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_2

359602-359851

TypeIII

Consensus_repeat	Method
AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	CRT
GTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	CRISPRCasFinder
AAGTTTCCATTCAACTAGGTTCTC-CGTTAAGAGAAAG	PILER-CR

3 spacers

csm3gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,WYL,csx18

The CRISPR arrays of NC_010546_2

>merge|NC_010546|2|359602-359851|CRT,CRISPRCasFinder,PILER-CR
AAACTAACGTTCAACTAAGTTCTCCGTTAAGAGAAAGTAACACACTTGAAGGTGTTGGTGGTTTATACGACAAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAGCATCACAGCAAATAGCACACGGAATGTATAATGACGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAGTTTTTTGTTTTGTTAGTAGCAATACTGACTGACAAAAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG

>NC_010546|2|1|359602-359851|CRT
AAACTAACGTTCAACTAAGTTCTCCGTTAAGAGAAAG	TAACACACTTGAAGGTGTTGGTGGTTTATACGAC
AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	CATCACAGCAAATAGCACACGGAATGTATAATG
ACGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	TTTTTTGTTTTGTTAGTAGCAATACTGACTGACAA
AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG

>NC_010546|2|2|359604-359851|CRISPRCasFinder
ACTAACGTTCAACTAAGTTCTCCGTTAAGAGAAAG	TAACACACTTGAAGGTGTTGGTGGTTTATACGACAA
GTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	CATCACAGCAAATAGCACACGGAATGTATAATGAC
GTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	TTTTTTGTTTTGTTAGTAGCAATACTGACTGACAAAA
GTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG

>NC_010546|2|1|359673-359851|PILER-CR
AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	CATCACAGCAAATAGCACACGGAATGTATAATG
ACGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG	TTTTTTGTTTTGTTAGTAGCAATACTGACTGACAA
AAGTTTCCATTCAACTAGGTTCTCCGTTAAGAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_182670732.1\|358082_359282_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_010546.1\|WP_009546842.1\|351606_352155_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010546.1\|WP_009546456.1\|368730_369504_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_010546.1\|WP_009546841.1\|348516_351600_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_010546.1\|WP_009546846.1\|355544_356087_+\|hypothetical-protein	cmr5gr11	mkCas0205_cmr5gr11_CAS-III-B	unknown
NC_010546.1\|WP_009546840.1\|347164_348370_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_010546.1\|WP_009546449.1\|361940_362147_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546847.1\|356196_357990_+\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_010546.1\|WP_009546447.1\|360098_361442_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NC_010546.1\|WP_009546453.1\|366093_366435_+\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_010546.1\|WP_009546454.1\|366495_366858_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546455.1\|366885_368604_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_010546.1\|WP_009546839.1\|346706_346994_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_010546.1\|WP_009546452.1\|365601_366036_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_010546.1\|WP_009546844.1\|353332_354637_+\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|312974
NC_010546.1\|WP_009546843.1\|352157_353348_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_010546.1\|WP_009546448.1\|361471_361843_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546845.1\|354641_355535_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_010546.1\|WP_009546450.1\|362203_365230_-\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|129705
NC_010546.1\|WP_009546451.1\|365343_365490_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_182670732.1\|358082_359282_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	3.13898e-77
NC_010546.1\|WP_009546842.1\|351606_352155_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.7555e-33
NC_010546.1\|WP_009546456.1\|368730_369504_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.80701e-117
NC_010546.1\|WP_009546841.1\|348516_351600_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	2.45815e-41
NC_010546.1\|WP_009546840.1\|347164_348370_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	4.97239e-15
NC_010546.1\|WP_009546847.1\|356196_357990_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.64044e-09
NC_010546.1\|WP_009546447.1\|360098_361442_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	4.82477e-69
NC_010546.1\|WP_009546455.1\|366885_368604_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	0
NC_010546.1\|WP_009546453.1\|366093_366435_+\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	2.58988e-57
NC_010546.1\|WP_009546844.1\|353332_354637_+\|hypothetical-protein	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.67029e-08
NC_010546.1\|WP_009546843.1\|352157_353348_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.42778e-72
NC_010546.1\|WP_009546845.1\|354641_355535_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.02747e-26
NC_010546.1\|WP_009546450.1\|362203_365230_-\|exonuclease-subunit-SbcC	gnl\|CDD\|129705	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC. All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	7.94676e-97
NC_010546.1\|WP_009546452.1\|365601_366036_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.60175e-28

>NC_010546.1|WP_182670732.1|358082_359282_-|ISL3-family-transposase
MTNILQLEGFTVMDYQLIKGMGIVLSLEKVDKKTTCIYCGSVTRKLHQNNELTIRDLSWGEQDVYLKINRRQMRCEKCQKKFTEELKDIKKKRTYTERLKKKIVAEVLNGDIKNVAQRNGVSEQEIETMLKDIGQELGKKKPQKLRRLGIDEIAVVKGQGKYYVVLVDLDKGVIIGLIEKRTEEEVSKYLEAWGEEVLRQIVEVSIDFWQPYKKVAKKLMPQAEIVADRFHVMKQVTDELDAQRKKSKREAIALKDSPEKKQLLSGLNKSKYALLKNEEDLSDQQKEKLEEIYKTVPILSKMYLLKEKFRKVFDENIDWISGLFELADWCAEAHTVYPKSFGTIRRWMGEIIAYFDERTNSGVVEGINNKLKLIKRRGYGFRNFDNFKLRSFLTWHFSG
>NC_010546.1|WP_009546847.1|356196_357990_+|hypothetical-protein
MYTGNKLIELLEKQQETRYKTNLFRKGTFRIQWRAKVGSYPHPDGETMISAGEPCGNWETYKQQPRNDKFINKKGKEETIKKLEQYLNELPKLPINGYIPGSSIRGLVRAWVKKDPDKRSRMNELLGYQDDEKITPGKIEFLDAYPDKPTRLTIDIINPQQEFQVLHNQEKQSNPCPLYTLGDGDNKIKVTIAIRGIPNKATEEDVKQVWEWVEQALHFYGVGSRTASGYGMIKSENKPKPIRPKNEISKTFNFTLYSQGCYGANQKNRDDVQLRPSHWRGWLRSWVLRFLLGVMSRKNAEKILGDLLGNIDENSGKSYKGCVRLELVKNQLWGEVSEDEPDFYTWKGQLKITAPKDILSKIILPIIRFACSVGGVGRGWRRPLHIFSFNNGNKAARGCYLKLSHKVPDKNTGEKKIRLYQLSPNKPELWSKTYDQWLKAIKSYCGDKITIDTTINQNLEAEVFSPNTCAIYAVPGPDQNPIDESYQTWQNIRDNEETRGEGMTLIYQSKYKKKTEVGGDAGNGNASCSWVSIRRVNIPNKIAQTQCQEIVCLFMGGQLTKIDHTDNQNNLRSHFLKDLSNIPDSTLLFGVSPDNNN
>NC_010546.1|WP_009546846.1|355544_356087_+|hypothetical-protein
MAKKNKLSQFPRGKKTVSANTNVTATPPKYNANNTKSELKISQATITNSKKVQPEQMSLFAHAAIQVYIEKKGEKSLDKEDLNAVLRLSQHLRIFGLLSAVGYINQTNEQEGKVRKRTVPVWHCLLGYLIAPSENLDTKDLMEKVINLTKNEPQQYMSMWRKSLLLAPHWNFWARAYSKD
>NC_010546.1|WP_009546845.1|354641_355535_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKDFRLNYLYSLSPIHCGGEGDLGNILEIAREVHTNFPYIPGSSIRGSIRNEVDIINSDATNKLFGKELDDDGNMGVHQVWFGDARLLWVPMKTMSFNGNQDIFTWVSCHSLIRDHAIISNLPFVTFPNEAVGTNAGTYEVADAQIKVLKITPDQEKTITFLGEFPDSLKDSVKPTWESNHIVLPDADFQVLMEHSLWTQVRNKISDGTKEDTEAGSAEVFWTDVCIPRDTIFYLPWGYSLSKIDPISTDEHNKLMEVIQGLIQVGGQANVGRGWVQSWVSHSTFEFNKQEQQLTNV
>NC_010546.1|WP_009546844.1|353332_354637_+|hypothetical-protein
MGESLIMASIVLSFVGNQDPASETTNQEGSIITLIRHLIKLNSKIRKVILLYTEDTKDNAILTKEWLQQDDFKISTNQIELIAVSSNLSDDPVDVKLATQEANKGLKQAKNYRKDNDIFEFNSSSGTPSMKTAWGILQASSYGINSRLWQVRNPKKIQPSQELVFENNVNVFKDESNFSVIKKQLQNYNYSGAIESLNNSDLDSKISHNLMEYGYYRLAFDFQSAREVIQPYQEEISQELIKNINDLYNENILELLQEVYYKGIIKIKNKQYADFLVLLFSFQENILKFLVKQQILKDTSQPLHWKVAKEKINYQLQKGELNEYLKNYSYDGRSLKLNGDINRIVMLAILDYFSQLDNHLSQITLLLKQLENYCQIRNELVHDIKRVSELENESEIIKTMREILILTKPNFQTVNPFNLLNEQIVKQLTPLVRG
>NC_010546.1|WP_009546843.1|352157_353348_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MYWYTLTPTDVLMLRDAKPFSPQERAWAGSVFPPNGHTIAGALRGLLGTKDNFKLKGVFFVKETPRQDTNNPEFTLYFPSPLGFVGNKPLIPLNWDKSLSLNYIFWDQTKPCPLTTKKPDYQEDKLDKKYRKYLPYEAILNYLQDSKFQEGDLLQLNDEPETPWKIETRSHNSIETNTKQVKDADGYFVENAIRMLPGWHLAIAIDQLTHENIENLSNKSEKLLTLRLGGEGHRVILQRCESLDTQWNQLKEISNNNFKNDQKAIAYLVTPGVFEKHHNGQAICKPYPWEWKLAHTINGNQKSGDLVSVATAKAVPISCRIRDKNDQNKSIPAPQVFAVPPGTQYYLNQPCYLFADPHNPDTQHLKENQEKQAYHKAKRLLELGYSELFWIKWENH
>NC_010546.1|WP_009546842.1|351606_352155_+|Uma2-family-endonuclease
MQLITRKFNVNEYHKMAETGILTPEDRVELIKGEIIAMSPIGRKHAATVNRLNQLLCQKFYNKVIVSVQNSIRLDNYSEPQPDIVLLKPRSDFYESKIPEPEDIYLLIEVADSTIKYDQDVKLPLYAESKISEVWIVNLNNKTLEVYRQPQNKTYVEQKKNVQSISPIAFPETTLTINDIFS
>NC_010546.1|WP_009546841.1|348516_351600_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSHLYHPYWQAKIWALLHDPALKPLSDRYGFAREGQWQLLRCMQGCKSPKDNKKVLGDCVLQGNWLNHVGLCDLVASASDRSTIGRLDPQYSAVTYQQQTGLQIRHLLSGEPQNLKVNNNWQENLITKRKKLEAKEAEFLDKISQWEDPKKVFWALWRCYAEVLEKEEALIHLLPAETRLPDGSLWSHVSMTSALAGGLAGYYKQAENYPIKNQKFNDYSRPYLVNFTFSPVQELIKASRKMRDFWAGSWILHYLSAKVSYAIANEYGPDTLLYPCLYQQPLIDNWLLEEYSDFKEWIEPHKPDQLLTAGFPNVIIMILPNNHKSQQDLKDNPIYAATQLAKRTLKEEWKKLGDQSLEFLQDSKQWQNINPNTWDKWLKCQWQTYYTAFPIGDPESDLTCSLRVGKNETEEQKKDAFEAWCHQQNQLTNPKESLFETNEEKFLKAIFKLTDIETEKEPPKTKYSKQPNLNVGSWWAYVFDQLRTSLNAVKNARTWELPTAFTVRSSLSGIGSAVHPIVNEEKPDRISEKEINEFWSEKFGLFDGTEKLNATEIVKRVLHKLLPEILNYEEQEISLYYPDLTAGVAGYLKNALLNNQQSEIDYYKRSCHKIYKEIQPLLDNDNLSQSWGIPWINNNKELKLSNTIHHPRLLNAGWLLEDVEISHDSNIEYREKLEELSTKRTTIQQVINKYYPSNNPTNWYILVAGDGDSMRDWLRGSKLKNYGEYLPDELREKIINDSNDEIPKEYKEPLQNFLEVRKRMGPSTHSALSRALLDFSNQLVPYLTEQRYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRQCFKGQEDPYNEFKNEGDYWQWNKPNKPKNIAQRPLFTMGKCATISFGIVIAHHSIPLAIALESLWEAEEEAKEHYTQKDNKDTYKDAVQVRVLYGNGNTLKSTSKFDIFNQWKQLLKLDLEPSLFEQAATIWEQHPIPDKSAIEPWTKAFCSRRDIGEELQQDYQKILTSFIQGLWITTPQNNLDKEVKNWLKLAAFVKRNRKISLNQE
>NC_010546.1|WP_009546840.1|347164_348370_+|WYL-domain-containing-protein
MKNKFKPHRYSDLESFERLLLLIAILVKYPGVGYRDRNLLDTTEIHYNALEEVKFYLQKLADQLGIDLPEDYPAITTLRKDLETLKDYQILEKRMYRWGYYLGTGVMSPLELKIALDALESLAIKQGDPRIRKITEQFKKRLRGFAALEDQQLFYPVRQQLNHAINYTDPDEMMEKGVYRQTLFHHIHILETAIIEGQIIEISRKKDLYDNKRVGIMKVYPLQLIYHNVAWYLLHEDYKNEHLVISRVNRLGNYCKILEPSGRGINKQKQSLTKAYQLLENGWGLKLGNLEEQKQELAGKLNFVKAKVRFFYPVSQFIEEGERRHPKQKIKRGKIDPQTHQPQYIDYSVALPLRSLDEFYFWLNSYGEYVQVLAPSELVERHQRSALTLVSRYGCNKDNIT
>NC_010546.1|WP_009546839.1|346706_346994_-|hypothetical-protein
MYISKRAAFVRNIAASAINCIVTLTLLLIAPLGLAAVITNTFLVTFSTFIVCSICDFIIVWLSFSPPPKRIIHQSGNLTRWQQSQQIERKNIDKE
>NC_010546.1|WP_009546447.1|360098_361442_-|ABC-transporter-substrate-binding-protein
MKRRNFIKYSGLGLASLGVAACSKVDIFNQQKTDVNFGTLEKSNLILGYVPNGDAAPLIVAQEKGFFERYGLSVTLKRLETWEEVKEELLGWTMDAGQLPYAFPILAQLGEDEAPLISLMTLNLNSSAITITQKAWDAGIRPSVDYFNFTDFEENIRRYWRNRETPVNLAVDSAFSTDTYLTRYWLSAIGLMPKTEVELVEFPASQMIYKLQAGMIDGYSASSPWNQQTVLEKAGFVSYVSRDIWQGHPNKILATMDGWAKKHPNTTRALMAAVIEACQYCDRLENQTEVAAILAQPDYLNLDTSLIESTLMGNYSYSYETSENYQRFIPDYTIFHHREADYLGENDCANYPWRSHAVWMLTQMIRWHDLDIYDYPKEADKLLDKIYPITIYEEVAEALNIPLPSNNMKKETNTAFIDGRSFDPSNPVAYLNQFPIRANGPQIFGFV
>NC_010546.1|WP_009546448.1|361471_361843_-|hypothetical-protein
MLKFFKIILLAITIISFSTQMAYADQCSYVDKEQALKAATFLKLNQLIYLFCEPCGETTPQPVTIRSISVGTVDYENYWQVSINNQGVDLAYTYVPSSLGQKPINLAALADCPAQDVSPFINP
>NC_010546.1|WP_009546449.1|361940_362147_+|hypothetical-protein
MLELDDLNLHIQYITNDLGEKTAVILPITEFEELLEDLEDLKTIADRKDEETISHEAVIAELKEDDIL
>NC_010546.1|WP_009546450.1|362203_365230_-|exonuclease-subunit-SbcC
MIPLQLTLKNFLSYRETVLDFRGLHTACICGANGAGKSSLLEAITWAIWGKSRTASDEDIIHTTAQYVRVDFEFISYEQSYRIIRSRQRGRSNTLDFQINSSGEFISLSGKGIKATQEIILSTLKLDYDTFINSAYLRQGRADEFMLRGAADRKKVLAELLKLDHYQALADKAKDLSKQYKGQEEQIKLNLDRIKQQLEEKKDINNQKKTLNQEIEQLQKSQEVHRDKLQKIKEKDSHRQAWIEQLTWHQNKQQTLNKESKELEQEQFQLVRKINEADKLINQEQEVTEKYEELLLLQKQEETLSHQFQLSQNIQQKKQKIEQEIFKKNNQLQLQIRQQQTRLEQLAEQEQDLQKTISQADDIKATVEKLNNHRQRLQELDKLQHTVTPLLKQKQILETELEKLKANLEAKLEQFENLENQYHQELEKIPERRQLLIELDNKIQEIDNQKVYQKRVKEKSQERKLTQEKLIVNQKNYTEKIEELQQKINLLNNPESTCPLCEQDLDENRRHHVIDKTNKQQEKLQQQIWFLQEELSVIKRDIKSLISEDKQLENQLKTSGNIQQEFSRIEAQLDQAGEVKIKLKKLLKEKEMIENVINTETYGMNIQNEIKIINQRLEKLNYDEQTHALARGEVERLRWAEIKQARIEDAIGNQKKIEQQKPEIIAKLEQLETERNNLETNSELKQEINKIEEELNNLNYDRSYHQRISDYIRKSQSCVVDYQKLQDVKQDYPQLQEQLKNIETKINNNQEEQKDTEKFVQQLSTQLETIEDHSQEIEILETKLQLQREQLDNLLGQKGRIEQSLSQLESLKKQQEEQEKEYNDVRKQYRVHTELSKAFSKNGIQLLMIENVLPQLETETNNILSRLTGNQFHIRFITQRAGKSGSSRKKSAKMIDTLDIIISDAKGTRAYETYSGGEAFRINFSVRLALAKLLAQRAGTTLQMLIIDEGFGTQDAQGCERLVAAINAISSEFSCILAVTHMPQFKEAFQNRIEVYKTNEGSKINLVS
>NC_010546.1|WP_009546451.1|365343_365490_-|hypothetical-protein
MNQGKIVAIITGAISIFLAVAYLVIVQLLDFRGEMIPAPTFDIIFNLC
>NC_010546.1|WP_009546452.1|365601_366036_+|GFA-family-protein
MSELSMIKGSCLCGAVNISTSSINHHLAACHCNMCRKWGGAALLGVECNDGISFEGEENIQVYQSSQWAERGFCQKCGSNLFYRLKENNHYYVPVGIFDNADNLVFDLEVFIEEKPNYYSFANETKKMTGEELFSMFSSSSEKE
>NC_010546.1|WP_009546453.1|366093_366435_+|histidine-triad-nucleotide-binding-protein
MTDTIFSKIIQREIPANIVYEDDLCLAFTDINPQAPTHILVIPKKPIPKLEEAQEDDHRLLGHLLMKVKQVAQEAGLTKGYRVVINNGEDGGQTVNHLHLHILGGRSLTWPPG
>NC_010546.1|WP_009546454.1|366495_366858_-|hypothetical-protein
MYYFPQPPYFLVVAGLFIGLTCGLAFEATLKSQINAMLKKPIDQMLKGSGLQLPFFGICIGICVFLSAGLEIFLFDRWLSYAISLPMTIFIAALVWIQLESLLKQLKEGGSKAIDLDAFY
>NC_010546.1|WP_009546455.1|366885_368604_-|AarF/ABC1/UbiB-kinase-family-protein
MTWQTIESYDPSSNIQQQKRYDAAAIARYYHRHPWEVIQRAITIIWSFGWFLLHLQWDHWFNPDKDNKQKCATELRQILTRLGPTFIKVGQALSTRPDLIRPDFLDELIKLQDQLPPFDNEIAFSIIEKSLGTSIDEAYREISPHPVAAASLGQVYRAVLHTGEEVAVKVQRPNLRPILTRDLFLMRWAACQFGRFLPLNLGHDLTLIIDEFGVKLFEEIDYVNEGRNAEKFAANFRNDDDVKVPVIYWSYSSDRILTLEWIQGYKLTDTDKIRAAGLDPYAIVKIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAFIDFGMMDQLEEETKETIASSVVQLINQDYDALARDFVKLGFLTPDTDIEPIIPALERVLGNAIGQSVGDFNFKTITDDFSELMYEYPFRVPAKFALIIRSLITQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRRLLEVLFKNGKFQWQRLENMIRIARSDEQFDLLPTARLGLQYLLSDEGRYLRHQLLLALTEDDRLHTEEVQRIWALISDDLQPQQLFGVAMKAFRQFSTAGVAAILPDTADVN
>NC_010546.1|WP_009546456.1|368730_369504_-|ABC-transporter-ATP-binding-protein
MTAESLSLTQKSSQPSPSHDYHPIIIRLEEITKIYGSENTKVKALDKINLTIEKGEYCTIMGASGSGKSTLMNILGCLDRPSSGRYYLDNIDVSRLPDSQLAEIRNGKIGFVFQQFHLLPQMTALENVILPMIYGEVSPTERRNRALEALEKVGLGNRINNKPNQLSGGQQQRVAIARAIVNEPVLLLADEPTGALDSQTTEEVLDIFESLHQVGITVVVVTHEAEVARHSRRVIWFKDGQIVHSHINPQELHGVVD

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Crispr_ID: NC_010546_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_3

809864-810664

Orphan

Consensus_repeat	Method
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	PILER-CR
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CRISPRCasFinder
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CRT

10 spacers

The CRISPR arrays of NC_010546_3

>merge|NC_010546|3|809864-810664|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTAGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGCTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGAGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGAAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAATGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAGGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGAGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTGGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATAGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGAGATCTTTATACCTCGAATGATTAGTTTTCGATTATGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGCAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAATGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAGTTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGATGTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG

>NC_010546|3|2|809864-810664|PILER-CR
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AGATCTTTATACCTCGAATGATTAGTTTTCGATTAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG

>NC_010546|3|3|809864-810664|CRISPRCasFinder
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AGATCTTTATACCTCGAATGATTAGTTTTCGATTAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG

>NC_010546|3|2|809864-810664|CRT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCCCATTGGTTGTGGCAAAGAATTCTCTGAGTTAACCCTA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CTATTATACCTGTAGTTGTTGTCATGAAGTTTTCCCCGATGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AAATATCGATCGCCTTAAGGCAACGAGTTGGTTCATCAGAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTACCTACATATACAGCGTAATGAGATAATGTTCCCAGTGGAG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCGAGAGGCCCATTTATTTGCACTAGGATCAAAGATTCTAGA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TCTCCTTGTCCCCTTATGCTCATGATCGCCTTTCCTTG
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TAGAACAATTGAGATAGAAGTCCCCAATTTAGGAAAACGCATA
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	AGATCTTTATACCTCGAATGATTAGTTTTCGATTAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	CAATCTATTAAGATTGCCTTTTTTAACTTTTTGTTTCAAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG	TTCATTAACGATGAAGAACAAAAGGAAAAATCCTTTGAT
GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009546033.1\|813920_814694_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546025.1\|804575_804920_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010546.1\|WP_009546037.1\|817476_818178_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NC_010546.1\|WP_024750223.1\|801023_802916_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_010546.1\|WP_009546031.1\|811610_812168_+\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|225564
NC_010546.1\|WP_009546039.1\|819495_820707_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NC_010546.1\|WP_009546029.1\|809045_809681_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_010546.1\|WP_009546026.1\|805199_805994_+\|DUF4058-family-protein	unknown	unknown	gnl\|CDD\|379094
NC_010546.1\|WP_009546024.1\|803125_804508_+\|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO	unknown	unknown	gnl\|CDD\|235416
NC_010546.1\|WP_024750222.1\|799432_800038_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377411
NC_010546.1\|WP_009546035.1\|815821_816163_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546027.1\|806136_807738_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173813
NC_010546.1\|WP_009546032.1\|812234_813755_+\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NC_010546.1\|WP_009546038.1\|818278_819349_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_010546.1\|WP_083765701.1\|804959_805157_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546034.1\|814754_815597_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320692
NC_010546.1\|WP_009546036.1\|816600_817245_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NC_010546.1\|WP_024750224.1\|807888_808983_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NC_010546.1\|WP_009546022.1\|800042_800993_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381349
NC_010546.1\|WP_009546030.1\|810885_811224_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009546025.1\|804575_804920_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.70507e-24
NC_010546.1\|WP_009546039.1\|819495_820707_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NC_010546.1\|WP_024750223.1\|801023_802916_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	7.24178e-21
NC_010546.1\|WP_009546031.1\|811610_812168_+\|DUF411-domain-containing-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.66459e-57
NC_010546.1\|WP_009546027.1\|806136_807738_+\|S8-family-serine-peptidase	gnl\|CDD\|173813	cd07488, Peptidases_S8_2, Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.82908e-55
NC_010546.1\|WP_009546029.1\|809045_809681_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.14408e-64
NC_010546.1\|WP_009546026.1\|805199_805994_+\|DUF4058-family-protein	gnl\|CDD\|379094	pfam13267, DUF4058, Protein of unknown function (DUF4058). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 244 and 264 amino acids in length.	6.37975e-134
NC_010546.1\|WP_009546024.1\|803125_804508_+\|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NC_010546.1\|WP_024750222.1\|799432_800038_+\|heme-binding-protein	gnl\|CDD\|377411	pfam04832, SOUL, SOUL heme-binding protein. This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologs.	1.72177e-12
NC_010546.1\|WP_009546032.1\|812234_813755_+\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.44808e-86
NC_010546.1\|WP_009546038.1\|818278_819349_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.20602e-61
NC_010546.1\|WP_009546034.1\|814754_815597_-\|M48-family-metalloprotease	gnl\|CDD\|320692	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein. This family contains peptidase M48C Ste24p protease bepA (formerly yfgC)-like proteins considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. Several members of this family also contain tetratricopeptide (TPR) repeat motifs, which are involved in a variety of functions including protein-protein interactions. BepA has been shown to possess protease activity and is responsible for the degradation of incorrectly folded LptD, an essential outer-membrane protein (OMP) involved in OM transport and assembly of lipopolysaccharide. Overexpression of the bepA protease causes abnormal biofilm architecture.	1.41986e-84
NC_010546.1\|WP_009546037.1\|817476_818178_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	5.21062e-144
NC_010546.1\|WP_024750224.1\|807888_808983_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	2.55393e-26
NC_010546.1\|WP_009546022.1\|800042_800993_+\|aldo/keto-reductase	gnl\|CDD\|381349	cd19123, AKR_AKR3G1, AKR3G family of aldo-keto reductase (AKR). Synechocystis sp. aldo/keto reductase slr0942 is a founding member of aldo-keto reductase family 3 member G1 (AKR3G1). It is an aldo/keto reductase that catalyzes the NADPH-dependent reduction of aldehyde- and ketone-groups of different classes of carbonyl compounds to the corresponding alcohols.	3.28018e-170
NC_010546.1\|WP_009546036.1\|816600_817245_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	4.26197e-123

>NC_010546.1|WP_009546029.1|809045_809681_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MARVRVRQHVNPLSAKYRNPLVIPEWDIIYPCVDRPLHLDIGCARGKFLFNMAPLYPETNFLGIEIREPLVIEANEQRDRLQLSNLHFLFGNINVSIESLLSSFPPNTLNCVSVQFPDPWFKRSHKKRRVVQPSLVQAIAHYLVTNGSVFLQSDIKEVAQEMGETFLNNSCFQKQHQETWLADNPFPIATQREIATFNKNEPVYRMLLKKI
>NC_010546.1|WP_024750224.1|807888_808983_-|metallophosphoesterase
MNFRFAIISDPHVAVPHTIPNHSHRFHLVEVSILALEKVLNHLEQLNLDFLLLPGDLTQDGEMDNHEWLAKRLQSLPFPVFVVPGNHDVPNLNETETKIGLSQFPSYYSHCGYESQQLYYTQEILPGVRIIGLNSNHFDEEGRQLGYLDKQQLTWLEKLLPQVKDQLLLVMIHHNIIEHLPEQSNHELGKRYMLDNASLLLKLLRSANCQLIFTGHLHVQDIACHQGIYEITTGSLVSYPHPYRIIEVKRPPNGSLSLNITSHRVKSVPGWENLEAISRQWLGDRSFPFMVKLLMASPLKISIQEAENLAPYLRDFWSDIAAGDGIFDFPHFPPEVRRYFQQFSAIKPDGTPALIDNQTILNLS
>NC_010546.1|WP_009546027.1|806136_807738_+|S8-family-serine-peptidase
MKRTVAWVISSLTTVTGIITPSLALNTSTGETGIYAHRLHQQPLNLTGKKIAIGQVEIGRPGIFGFDKIAAWSPTFKLAGVYYQNRDVKSNGNLDNHAAMVASVMVSQDKRLPGVAPDARLYASAIGAIKGGGQPQECLASQHIAQRNSGDVRAINFSFGESLEQDHRKDAKLDGNAHLTQCIDWSSRVHDTLYVIAGNQGTGGIPIPTDHYNGITTAYTTKRDGIYTKVDFANLSALPVGIGRSLIKREINVGPRRAINLTAPGSKVAVYDLAGTIQEVSGTSFAAPHITASVALLQEFGDRQLRNQAPNWSLDSRRHQVNKAVLLNSADKIQDKGNGLLLGMMRTIFSKNHYTWFESDAYRNPDIPVDIQMGTGHLNALRAYQQFSAGQWKPQNPVPAMGWDYETVSKDNDQEYVLSQPLPENSFVSITLVWDRLVELNDRNNNERYDLGENFEDRGINNLDLYLMPANADNTSQSICRSVSRVDNTEHIFCPVTTAGNYKIRVKYQQQVNQGEQPYGLAWWTVPQGSVKP
>NC_010546.1|WP_009546026.1|805199_805994_+|DUF4058-family-protein
MLSPFPGMNPYLELPLFWSQVHTHLIVAIADYMNPILRPKYRMSMEQRVYTDTNNDDNLELVGIPDNVVFTPSSNPTDTSSNVAVAPPKVQPLPITIPQPETIKEWYLQVKNVETQEVVTVIEILSPKNKKGGEGRNKYLKKREQVLMSLTHLIEIDLLRKGEIMPMNIDDRIKSAYRIVISRSDHRPKAELYAFNLAQEIPSIPLPLQPEDQEPLIPLQDLLHSLYEKGSYDLAINYQKQILEDLSETDQTWINNLLQEQELI
>NC_010546.1|WP_083765701.1|804959_805157_+|hypothetical-protein
METLKEYILVSADQKLIECFRLNDKRVWELYSFSENENIRLESIDFSCPVKLIYEDVILTDENEE
>NC_010546.1|WP_009546025.1|804575_804920_+|Uma2-family-endonuclease
MVAAKEHFFMTPEEYLEREEKQPLKYEYMDGDVYAMSDNTLPHNTLALNIACALKNHLKGKGGKVLICGAKVQISERGPYHYPDVVISCDERDKKAFKFLQHPCLIIEVLSPST
>NC_010546.1|WP_009546024.1|803125_804508_+|FADH(2)-oxidizing-methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))--methyltransferase-TrmFO
MTESTAKVQVIGGGLAGTEAAWQVAQAGIPVILHEMRPIRTSPAHHSQELAELVCSNSFGAMSSNRAAGLLHEELRRLNSIIIQTADKHAVPAGGALAVDRGVFSHQLTQTLQNHPLIELRRSEVQEIPSDGIVILATGPLTSPVLAEKLQQFTGMAYMSFFDAASPIIVGDSINRDIAFLASRYDKGEAAYLNCPLNPEQYLQFRDELCTAEQAELKEFERETAKFFEGCLPIEELAQRGEDTMRYGPLKPVGLFDARLGDFRDPENKEKRPYAVVQLRQEDKQGKLWNMVGFQTNLKWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLDPTLQFKSRPTLLAAGQLIGTEGYTAASAGGWLAGTNAARIALGLEPISLPSTTMMGALFEFISSASPKHFQPMPPNFGILPDLPVRIRNKRERYGKYRDRALADLNDCQTQLNNHQKNSVILV
>NC_010546.1|WP_024750223.1|801023_802916_-|mechanosensitive-ion-channel
MIKKVSSFRSLSLKIFIFFSIGLLMITTIAPIVMAESPIISPNSSPSSQQTQESQVQRIHRNPEIQALMQKFDISGKEAQQLLTKEQELYDLGLFSLSSGKLGNLQYRAVKLDGRIVLPIAANIEENPNVLQLRVKRIENTLNEIVRRNLNPNEIGVFPSILNQETVLVISPKSKSSNSDSELQQRWLLMTITAADSRLYGIPIPMLAKIGSKVVDEALEKAWKSRQPQSILQQSIISLGILILMITASWLLLASQKYLVPRQKNKKSIFWNRKLLLVGHAVIWFPGMGFILRGFPDSYEIGRWLLDNTVTISTSIISFLIISRILDIIVKFSESQEKLKSIPIRVFVQLFYILIAILFILIIVSKSINQPLTNIMAAVGAGSAILMIIFKDSIMGFTAGLQLAANRMIALGDWIEMPKYGADGFIDEVNLFTVKVLNWDNTITSIPTYALISDSFKNWRIMFESGVRKIQRAVYIDMTSIKFCDPEMLERFSKMDYIGEEIKEQSQRIKQDSIHKNKLPPVDEKWLSNISVFRAYMMAYLQAHPKVSPGPYFLVRQLHPTEHGLPIEVYVYCTDTAWARYEEVQSTIFDHMFCILPQFDLRVFQSPSSYDFTTLGMRQKSEVNHHKKGG
>NC_010546.1|WP_009546022.1|800042_800993_+|aldo/keto-reductase
MKTLTLNNGNTIPQFGLGTWKSDPGKVKNAVKCALNIGYKHIDCAPIYGNEKEVGEGLAESFQEKVVKREDIFITSKLWNNRHYKQDVIPGLKQTLKDLQLDYLDLYLIHWPVAFKPDVNFPEEASALLPLSEVPLIETWQGMEQAIDEGLVKNIGVSNFSIKKLENIKSNSRIQPSMNQVECHPYLQQDQLLAYCKENDVALTAYSPLGSKDRPDFVKHDNEPILLENQVINKIAQKHQATIAQILIQWAIARGTVVIPKSVSPERIEENFAAQNIILDPEDMENIKALNQNYRYVDGSFFALSNSSYTVESIWA
>NC_010546.1|WP_024750222.1|799432_800038_+|heme-binding-protein
MKLYYLFLPLGIIAIAWFAFGIYQANSAPLPVGFPSPTTPGKIEIKQYPAYRAATYHYSGNLSEAGSQAFSSLYQHISSNNISMTAPVETRYPLNTLETNEQTGEATVSFLYRNTDIYPQEIADNITVEDIPSMKVVSLGLMGGYSYESYQKGLEKLKNWLSENPTYQMAGKPRRLFYDGPYKPDDTKRSEIQIPVTQETD
>NC_010546.1|WP_009546030.1|810885_811224_-|hypothetical-protein
MKVIPSILITCSLISMAPKAISQVLRSSDFDSLATTSSEDLTGVEPRTIDDWNWGLGGEFPDREPSPSLESSNFDLDLYETRVRQLNDAYQDTDYNLGDYDRPTRRFPLLDL
>NC_010546.1|WP_009546031.1|811610_812168_+|DUF411-domain-containing-protein
MFNASSKWLLPVIAGVAVMGVAGTMYLNPSTNNNQAITQPSNETILASNWDRVNESYNGNMSMTVYRSPSCGCCGIWVDHAEKHGFKITDIKTDDMASIKQKHNISSNLESCHTAIIDGYVMEGHIPADDIKRFLKEKPDMIGLSVPGMPIGTPGMEAGNTKQPFAVFAINKDGSTQVYKEYETY
>NC_010546.1|WP_009546032.1|812234_813755_+|multicopper-oxidase-family-protein
MKSINRRNFLILGTSTTILALGTHQVIKKLQSNNNDFSNKSYALNSQNIISSQNGLLETTLEASYQEVPLGNRTAKLLTYNGQVPGPRLEAKPGDKVRLHFVNNLSQSTNIHYHGLHLPPTGNADNVFLEVKPKEKLTYEFEISPKQTGGINWYHPHLHGLVAEQLSGGLAGLFIIRDQLDEIPEIKAAKEEFLVLQDFSLDDNGDLLPSNRMPLMMGREGNVITVNGKINPSFSVPENGLLRLRIVNASTSRFYNLSLENHPFYLIANDGTTLEKPIELSEILLTPGERVEVLIKGDKNPGNYQLVSLPYNRGSMGMMGGGMMGGGMMGRGRMGRGMMGNRRNNIDNNSPIPLATINYENAVTPLNLPTELMPISPLPQPQNTRQFSLNHGMSPGIGMAFLINGEPYQHDTVQTQVKLNTVEEWEIINTGVMDHPFHVHTNKFQVMSRNGIPNPYPTWKDTILVRRGERIRIRIPFEDFTGKTVYHCHILDHEDLGMMGSLLINA
>NC_010546.1|WP_009546033.1|813920_814694_+|hypothetical-protein
MVLSRNDSKQPVQVAKYVPKLSEVQKLEIEQKKNVMLLVENLMQREAATFKMIIDCLYDVGSLNLINKKVSLRFLKSLIRFIVKLAKTIFRSIAFYWVVKNTPELITNWLINKIMISREPKRKPLKTAKKSGQISKAKKAQIKQKKKIQKKSPTVVKYFPKLSEAQKLEIEQRKNVILLVENLMEREEATFKMIIDCLYEVGSVNLINQKVAMRPLNRVMRLIARLSKPSFRAVAFYWVKRNTPELITDWLLSKVRF
>NC_010546.1|WP_009546034.1|814754_815597_-|M48-family-metalloprotease
MMKFKRPFRRSLIYGLLVTLMSGSIIVSSPQPSYGQSWLNWIFQGVQVIQLSTLSDSQEVKYGQQINRELISSGQFRLSRNRALIERVDRIGQRLARNSSRPNLPFTFQVIQDDSINAFATMGGFVYVNTGLIAAAENEAELASVVGHEIAHITERHSIKQMRNVAISQGLMSAAGLNENDIVNLGVQLAVNLPNSREAELEADQVGLQNLRQAGYAPIGMITFMKKLTQKGGSPPAFLSTHPGSSQRVEALTQAVNPEMAYQGDGLDNQAYQREFRALL
>NC_010546.1|WP_009546035.1|815821_816163_-|hypothetical-protein
MNYCFDIIGTTSLLTFFNYQQQLEQNQNRGKAYLGSHECSLDGFIESVENIPKKPDWNWDDVVGSIVNFWLKNEDKVRYWQNHCHTIDSDTVIVARVGKIEALRKEFESLFDV
>NC_010546.1|WP_009546036.1|816600_817245_+|pyridoxamine-5'-phosphate-oxidase
MDLTALREEYTRHGLTRDDLEDNPFKQFEKWFQQATEAELSEPNAMSLATASAKGEPSIRTVLLKYFDEKGFVFFTNYESRKAQQIEENPHVALLFLWLPLERQVKIQGTATKVSTAESLNYFTSRPRGSQLGAWCSAQSSVISSRKLLEMKFEELKYKFQHGEIPLPSFWGGYRVKPTRFEFWQGRPNRLHDRFSYTLTETDDTTWGIHRLAP
>NC_010546.1|WP_009546037.1|817476_818178_+|ribulose-phosphate-3-epimerase
MTQSTKSTVISPSILSADFSRLGAEIEAVDKAGADWIHVDVMDGRFVPNITIGPLIVDAIRPYTKKPLDVHLMIVEPEKYVADFAKAGADIISVHAEHNASPHLHRTLGQIRELGKQAGVVLNPSTPLDLIEYVLELCDLVLIMSVNPGFGGQSFIPEMVTKIRKLRQMCDEKGLDPWIEVDGGLKPANTWQVLEAGANAIVAGSAVFKADDYAEAIEGIRNSKRPQPELATV
>NC_010546.1|WP_009546038.1|818278_819349_-|Gfo/Idh/MocA-family-oxidoreductase
MSDTQKPLTSQRSIFDPIRIGVIGVGNMGQHHSRILSLLKDVELVGVSDVNVERGIDIASKYRVRFFENYQDLLPHVDAVCIAVPTRLHHSVGMDCLRAGVHTLIEKPIAASIAEAESLVNAAASSHGILQVGHIERFNPAFQELSKVLKTEEVLALEAHRMSPYSQRANDVSVVLDLMIHDIDLLLELVGSPVVKLTASGSCASNSGHLDYVTATLGFANGIVATLTASKVTHRKIRRLAAHCKNCLTEADFLNNDILIHRQTTANYSTDYGQVLYRQDGLIEKVHTTKIEPLHAELEHFVHCVRGGDQPSVGGTQALKALRLASLIEQMALDGKVWQDSDLSYQYLNPSQMSLS
>NC_010546.1|WP_009546039.1|819495_820707_-|acetate-kinase
MKILVLNAGSSSQKSCLYSIEGNSLPKHSPDPIWTGNIDWTVSKNEGILTVKANEIKQTITLNQENKAQAIPKMLETLTQGQTKVIDNLSEINVVGHRVVHGGKNYSEATKITPEVKAKITELIPLAPNHNPGHIEGIEAIETVLGDVPQVALFDTAFHQTIPLENAAYPLPFEWLEKGIRRYGFHGISHEYCAHRAAEILDQPLSSLKLINCHLGNGCSLTAIKNGKSIDTTMGFTPLEGLMMGTRSGSIDPAILIYLMREYSLTPDDLNTLLNKESGLKGVSGISADIRAILQGIKEHNFRAQLAFDMYIHRLRSQMGSMLAVLGGLDVLIFTAGVGENAVLVREKACEAFEFLGLKLDQTKNESSPMDEDIATENSSVRILVIHTEEDWAIAQQCWHLCH

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Crispr_ID: NC_010546_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_4

1203543-1203934

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
TATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	CRISPRCasFinder
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	CRT
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	PILER-CR

5 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3,cas6,WYL

The CRISPR arrays of NC_010546_4

>merge|NC_010546|4|1203543-1203934|CRISPRCasFinder,CRT,PILER-CR
TATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCACGACAAAAGCTAAGTTCAAAGATACTCCTGTTAGTATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCACCTAATCCTCGCAGTGGTAGAGGTAATCAGTCTAATTATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCACAAAATCGATAATCTGATCTAACACTGGCCTATTTAAATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCACGAAAAATGATGAGAGTATTGCGTAAGGCACTAAAATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCACAATAGTAACGCTTCAGCTTAGTAGATCCCAATCTAATGGCCTAACCTTTGACAGACCGTACTCCTTATCTA

>NC_010546|4|4|1203543-1203863|CRISPRCasFinder
TATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	GACAAAAGCTAAGTTCAAAGATACTCCTGTTAG
TATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	CTAATCCTCGCAGTGGTAGAGGTAATCAGTCTAAT
TATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	AAAATCGATAATCTGATCTAACACTGGCCTATTTA
AATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	GAAAAATGATGAGAGTATTGCGTAAGGCACTAA
AATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC

>NC_010546|4|3|1203544-1203934|CRT
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	GACAAAAGCTAAGTTCAAAGATACTCCTGTTAGT
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	CTAATCCTCGCAGTGGTAGAGGTAATCAGTCTAATT
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	AAAATCGATAATCTGATCTAACACTGGCCTATTTAA
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	GAAAAATGATGAGAGTATTGCGTAAGGCACTAAA
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	AATAGTAACGCTTCAGCTTAGTAGATCCCAATCTA
ATGGCCTAACCTTTGACAGACCGTACTCCTTATCTA

>NC_010546|4|3|1203614-1203863|PILER-CR
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	CTAATCCTCGCAGTGGTAGAGGTAATCAGTCTAATT
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	AAAATCGATAATCTGATCTAACACTGGCCTATTTAA
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC	GAAAAATGATGAGAGTATTGCGTAAGGCACTAAA
ATGGCCTAACCTTTGATGCCGTAAGGCGTTGATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009544023.1\|1195735_1198102_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_010546.1\|WP_009544031.1\|1204196_1205261_-\|type-2-isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235465
NC_010546.1\|WP_009544037.1\|1212921_1213560_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NC_010546.1\|WP_009544033.1\|1208549_1208984_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_010546.1\|WP_009544026.1\|1200483_1201158_+\|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_010546.1\|WP_009544040.1\|1216561_1218055_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NC_010546.1\|WP_009544035.1\|1209837_1211838_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|272984
NC_010546.1\|WP_009544022.1\|1195086_1195746_+\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_010546.1\|WP_009544034.1\|1209008_1209773_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|177084
NC_010546.1\|WP_009544028.1\|1202997_1203291_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_010546.1\|WP_009544036.1\|1212157_1212910_+\|sucrose-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|368291
NC_010546.1\|WP_009544038.1\|1213563_1213848_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544039.1\|1213891_1216198_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_010546.1\|WP_009544025.1\|1199623_1200484_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_010546.1\|WP_009544032.1\|1205397_1208469_+\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|223460
NC_010546.1\|WP_009544024.1\|1198104_1199586_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|187844
NC_010546.1\|WP_156922858.1\|1193686_1193773_+\|DUF4090-family-protein	unknown	unknown	gnl\|CDD\|372561
NC_010546.1\|WP_009544027.1\|1201312_1202989_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NC_010546.1\|WP_009544021.1\|1194074_1195073_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_010546.1\|WP_009544020.1\|1192658_1193432_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009544023.1\|1195735_1198102_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.98386e-37
NC_010546.1\|WP_009544031.1\|1204196_1205261_-\|type-2-isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	1.73741e-178
NC_010546.1\|WP_009544037.1\|1212921_1213560_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	4.32246e-68
NC_010546.1\|WP_009544033.1\|1208549_1208984_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	6.08339e-30
NC_010546.1\|WP_009544026.1\|1200483_1201158_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.09125e-47
NC_010546.1\|WP_009544040.1\|1216561_1218055_+\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NC_010546.1\|WP_009544035.1\|1209837_1211838_-\|diguanylate-cyclase	gnl\|CDD\|272984	TIGR00254, Hypothetical_protein_yaiC., diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein. [Regulatory functions, Small molecule interactions, Signal transduction, Other].	1.12125e-68
NC_010546.1\|WP_009544022.1\|1195086_1195746_+\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.43583e-82
NC_010546.1\|WP_009544034.1\|1209008_1209773_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|177084	CHL00182, tatC, Sec-independent translocase component C; Provisional.	2.20821e-95
NC_010546.1\|WP_009544028.1\|1202997_1203291_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	7.93627e-18
NC_010546.1\|WP_009544036.1\|1212157_1212910_+\|sucrose-phosphate-phosphatase	gnl\|CDD\|368291	pfam05116, S6PP, Sucrose-6F-phosphate phosphohydrolase. This family consists of Sucrose-6F-phosphate phosphohydrolase proteins found in plants and cyanobacteria. Sucrose-6(F)-phosphate phosphohydrolase catalyzes the final step in the pathway of sucrose biosynthesis.	7.57291e-95
NC_010546.1\|WP_009544039.1\|1213891_1216198_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_010546.1\|WP_009544025.1\|1199623_1200484_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	3.69517e-31
NC_010546.1\|WP_009544032.1\|1205397_1208469_+\|alpha-mannosidase	gnl\|CDD\|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	0
NC_010546.1\|WP_009544024.1\|1198104_1199586_+\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|187844	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csx13_N family.	1.74153e-31
NC_010546.1\|WP_156922858.1\|1193686_1193773_+\|DUF4090-family-protein	gnl\|CDD\|372561	pfam13319, DUF4090, Protein of unknown function (DUF4090). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	4.36566e-08
NC_010546.1\|WP_009544027.1\|1201312_1202989_+\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NC_010546.1\|WP_009544021.1\|1194074_1195073_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.18633e-42
NC_010546.1\|WP_009544020.1\|1192658_1193432_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	8.87142e-140

>NC_010546.1|WP_009544028.1|1202997_1203291_+|CRISPR-associated-endonuclease-Cas2
MAELKNWYLICYDIRCPKRWRKAYKLLEGYGERLQYSIFRCWLSQRMREKLRWELEKILTTEDDLILIRLSQQCVRDLPKYNRSNTWLLDEKGFRVI
>NC_010546.1|WP_009544027.1|1201312_1202989_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MSTTNLDQRTSINLTEDTIRVSALHAFAYCPRLFYLEEVEELYTQDSAVFAGRRLHEEIDKQEDEEWLDLYLEDEILGLRGRVDALRTREGQTIPYEHKRGRCHRDENKQPQAWDSDKLQILAYCCLLEASLGITVIEGRIRYHADNVLIHVPVDDQGRQWVSDTIKQARELRKSAYRPPVVNNEYLCSRCSLSPVCLPEEARLAHNKEWHPVRLFPQDDEREVIHVLEPGTRIGRTGEQLKISRRNEADEKVSIQQVSQVVLHSFSQISTQALHFLSYKDVGIHFVSGGGRYVGSLDTRNGSIQRRIRQYEALTKSDFCLELARKLVKCRGEGQRKFLMRGKRNIKRKSPDLEKAIAQMKAVLKQVPQVESLESLLGFEGNLAALYFGALPNILGKDVSDSLGFAGRNRRPPKDRFNAMLSFGYSLLIKDVMNAILTVGLEPALGFYHQPRTQAPPLALDLMEIFRVPLVDMIVVTSINRQQWDTETDFDVRGQQVWLSDSGRRKFINLYEQRKAESWKHPVTGYSLTYRRLLELEVRLLEKEWCGEGGLFGQLIVR
>NC_010546.1|WP_009544026.1|1200483_1201158_+|CRISPR-associated-protein-Cas5
MENTLYLECPCTSFPRSFARDYKETYLYPPPSTIYGFLLSLVGEEDLTAHLGVKLAIGIIGNSPPISRIVRKQRHHKFSKTHMGTYPPSKFSKPNFQELLTDLKIVIKLNSSEESAKIKLDERVGIALSSPEQISRFGGLSLGESWSLINGIRPYRLDDGKIQWLVKNNRGLIGLPIWIDRTTTRGTFQRFTLSNSDEFNENSWTEIKAPVPAKTSKSRSRSKK
>NC_010546.1|WP_009544025.1|1199623_1200484_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSQHIFVTVVTPTAVAANNRGEGDGSTLSTLQKITRGNDQYTTVSADAIRWGYRERLQNYQPENVNRTFDPEADKYNFKDEKYNAETYIDDDLFGFMDAKKDKDNKDATTKRRGALEVSRAISLDPYWGDIVFGSKGGKKDNKSIHNTEVHCTAYQYTMALTPSSLKDPERAKFLLEAIPAIKHVGGNHARFLYEFRPESIVIRVTEDPSPWILGCFERVGESVGCSRLVRLVEVKDVPASELIVAGEIADTPYGKQLKSLGVEVKRGIKEAIIAAKGMLKMEVTA
>NC_010546.1|WP_009544024.1|1198104_1199586_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MTQLTLSIFDPNTLLPHRAGIAGLALALDAINPSDVPFSWEVTEDEVKLSWDCSDQEAILSLLKHTYHLEDGYLDVPALNLGQQEKYTFTEGVTTTFLQHGKQRKQQKNPISLNFTVDEGQPQITRSFRPVEDCYYTRDFKEAFNTKGAFKPKIPIKGHHLPGLVECFAHGAYQESPEGFLALVFLPLACNYYQLPGYRSAVVVPEIKNLKEWVKRRKKNAGSSYRDFRSSSSGESALRFLLQDKLLEDNQDFRVDYCEVYQLGKQQWDGSQSYLKQAVYRVQADDKVLALYDSAFQFFKPQVRTNDKGETWLATSKVLPWLCDNLITGKPWYSGFYNFYKQNELYERKGLISMSQYLDALEQTFFDAIQGAFSSFLREQIIQAQKQGRPLDYKQATDKVINRLLRPSTQQDFAKAMVDFLSRHRSKATRGVGAEIYQWLHKDNNWKQARDLALLAIASYTGKGNDGTPEIPEKVLDESEISSDSEEALEMSI
>NC_010546.1|WP_009544023.1|1195735_1198102_+|CRISPR-associated-helicase/endonuclease-Cas3
MQLKSKLEPNILLAKSFDNTHWKGSYGLVGHTADVVNAVTTLVDILGAPEGICGADPLIEQFGLQCTLSELKATIRLAAYIHDWGKANEHFQGIVRAKMREAYPKRFLPENPQLMRHEVFSVLLAWEFKEWLEQGEGDFLIALAAAGGHHLKLGGRGGKCTDKLGEIRQSGDDKLHFYVIDRVNGKPQFNRHFHQLLKYGVKKLNLPEKVRFSQNFEKQLIEQSSLIWSIREIKDKRQNIKNFLSNEWEPDPVFLAVVKALLIAGDAIGSAIPPIDLKDDDGKPLSIEKWIKNEVTRTLNEEKLQKVIDVRLNGNQLRPFQINLAQSLARVTLARAGCGTGKTLGAYNWAKSKALGRKLIFCYPTTGTSTEGFLDYVHNQIDSVLLHSRADVDLEMATTGEEDDAGEGINNEGALKLESFKAWGRESIVCTVDTVLGLLQCNRRPIYCFPAIAQAAFVFDEVHCYDNRLFGALLRFLEVIKAPILLMSASFLPWQLEAIEKAVREPIEMIHGPVELETQPRYRFDYSEKPNWDRVEQELKNGGKVLWVCNQVNTAISVYKEAKAKGLNALIYHSRFRYKDRVKHHRDVVDAFKPENNEPVLAIATQVAEMSLDLSATLLVSQIADPAGLIQRLGRLNRRYCGHAKDALFYGDDKVGYPYSQQNLENGLSLIKSLRSEVCQADLAQWLESSDQEGKPDKQSVLLDKSWQTYPTSLREAGFNVTVLLEQDLTTIKSLPSKEIPRFTVPIPADPKAIKQWDKHKFYPIAPNNQWTYSSELGACEIKNETKK
>NC_010546.1|WP_009544022.1|1195086_1195746_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MNFLEIQCSVRGKTLPADHGYALYSAIKHICKEQQPLLLDNNNLSSEILLSSIPGVPDKNGLVYLNNKSRFRFRCPAEQATQWYRFLQNQVFDIRGHLIRLVQPRLTLPETSNVLKARLVTFRLEKWNSQEAPFHFLESCQKALERIEVNGQAFIDSNYQGDLALRAIKIREKNVLGYGVVVEGLNEDDSLKLQGLGLGGRKHFGCGWFYPAKEEINAA
>NC_010546.1|WP_009544021.1|1194074_1195073_+|WYL-domain-containing-protein
MGKTAALSPRRLERLLQMDELLRSKKRITQPMLAEKLEVTQRTIRDDLRFLEDRFMAPLDYNKKEGWFYTDDNWRLPSISLSIGELFALTLGARMLESYAGSAYEKELRSSIERLSERLPEQTWINLQQLADERIIFRSGAEMKLDPEIWQNLLEASRQSKRIWIHYYAATRNQYSERVVEPYLLHVYRATNPYLIGFCHKRQEMRWFRTDRIQQIKVLDETFERDPNFNAQTYLDQIFQAEVGGKPVPVSIWFDAANAPFIRERRWHVTQEITEHEDGSLTLHLVSGGLNDLKRWVLGYGKGAVVKEPVELLNLVKAEVEGMSQLYQIFTN
>NC_010546.1|WP_156922858.1|1193686_1193773_+|DUF4090-family-protein
MEELNQRLIKAEFVLLKEKEIAFYYGGK
>NC_010546.1|WP_009544020.1|1192658_1193432_-|hydroxyacylglutathione-hydrolase
MEIKRLPALSDNYIFLLHDANNNTAAVVDPAVAEPVLNCLDQLGAKLIAIFNTHHHADHVGGNKKLMEQFPDLCVYGSKEDQGRIPGQQVFLEEGDTVEFAGKTGKVYFVPGHTRGHIAYYFPPNENEEIGDLFCGDTIFAGGCGRLFEGTPAQMVESIGKLRNLPDHTRIWCAHEYTLNNLKFAVTVDKDNSDLQIRYQDVIKARKNEEATVPSLLGEEKKTNPFLRWDQPALQMITGMNDPARVFGKIRGMKDNF
>NC_010546.1|WP_009544031.1|1204196_1205261_-|type-2-isopentenyl-diphosphate-Delta-isomerase
MSHAVNESPLIPPTLIENRKADHINIVLEKDVTGKDITTGFEQFFIEHDALPDVDLDEVDLSLQLWGKTLQAPLLISSMTGGTDSAHTINLNLAEAAQALGIAMGVGSQRAAIEQPNLGETYKIRQVAPDILLFANLGAVQLNYGYGIDEAKKAVEMIEADALILHLNPLQEAVQAEGDRNWKGLYNKIETLTTQLDVPIIAKEVGNGISGKVARRLANCGVSAIDIAGAGGTSWSEVEAYRQHDPRRRQIAHCFAGWGIPTAMSLMQVRKAVPELPVFASGGIRDGIDAAKAIALGATLVGSAAPLLDAATHQSQAVYDKFSILLETLKIATFCAGVSNFTELQQVTLHRRND
>NC_010546.1|WP_009544032.1|1205397_1208469_+|alpha-mannosidase
MKISETIEQLRRLTQVNVQDNWLGTSEEIDINNINVDNLELMTANENDYLIWETGSQVKWLVQKFVIPEDLQGYPVQGLFIRLSLVWWAEIAEIFVNGKLVQEGDLFDSLARVLLTHFAKPGQEFLVCLRLVSPGHDIGALMKSQLIYESAYNTIDPGFVADEIAVLYNYLSRFDPEQLDFVEKSVNNIDWNCVHNRNNFNDELIKVRQQLQPLSDEIKQRHFNIVGHAHLDMAWLWTVDETWEVAERTFRSVINLQQEFNDLTFCHTTPVLYEWIENNRPDLFQQIQASYQAGTWEILGGMWVEPEVNLVSGESIVRQLLYGQKYIKEKFGSITEIAWLPDSFGFCLQLPQLFKQSGINYFVTGKLHWNSTVEFPHGAFWWRSLDGTQLLTVMSPPNVEGVMTTHPITMTNYSVKWEQQTGLKEILWIPGVGDHGGGPTRDMIEVSQRWQQSSFFPKVNFTTAKSYLDKVSNIVKNGLDIPVWDDELYLDLHRGYYTSHADQKYYNRRSEELLYQAELWSCLAAIIENKIIDNEVKNNLELAWKKVLFNQFHDILPGTAITDVFVQANKDWEAVKTIGNRILQSAFKKVVSCLKFPTIPKPEAKPIIIFNSLNWERSEIVEIDKNHEVYDLEGNQLITQVTHDNKLLFLAEEIPSMGYCVFWIVPSNSQKNKQKILQQNETIFDNGYLKVKINGTTGNIDSIYDKINDQEILRGEGNQLQSFRDQGQYWDAWNIDPNYNNYPLPNTELKSIETLETGPLRWKVRVSKKLGNSEFTQDYILQKHSATLKIKTQVNWQETYVLVKAAFPFNLTADYTSYEIPFGTIQRTNFPQTPYEKAKWEVPALRWVDLTDNSKNYGVSLLNDCKYGYDSQCDRLRLTLLKSPRWPDPTCDIGHHEFTYAIYPHQGSWQEAKTVQKARELNIPLQVMIPNHKINNQGTLPPIFSGLTIQPDNLIVSALKPAEDGSYKYILRCYECEGKPANIEMASDLDLTLGQAVNLLEEETNQNREIQPWKIASFEITKE
>NC_010546.1|WP_009544033.1|1208549_1208984_+|universal-stress-protein
MNLLVAVDCSDSTQKVVKKAQEMAKTLSAKLWLIHVAQPEPDFVGYETGPQTVRNYVAETFHAEHSQIQEIAETLRKEGIEATALLIQGSTVETIIKEAEKLAVDMIIMGSHERNPISELFLGSVSKGVISQSQCPILIVPTRS
>NC_010546.1|WP_009544034.1|1209008_1209773_-|twin-arginine-translocase-subunit-TatC
MTQTDSQPRTEAENNRYLDEIPDEVEMSLFDHLEELRMRIFYALIAVVIGMIGCFLVVKPLVRWLEIPARGVEFLQLAPGEFFFVSIKVAGYSGLLIASPFILYQIIQFVLPGLTRRERRLLGPVVLGSGVLFFAGIAFSYWALIPAALNFFISYGADVVEQSWSIDRYFEFVLLLMFSTGIAFQIPVIQLILGQLGIVSSQQMLKGWRVVILVSVILGAILTPSTDPLTQSLLASAVLGLYFGGIGLVKLSGK
>NC_010546.1|WP_009544035.1|1209837_1211838_-|diguanylate-cyclase
MDNLISQLFSHHQYIPHGHCYLWQPSLLWLHIISDGLIAIAYFSIPIILLYFIRQRKDMPFQGIVILFGTFILSCGTTHVFSIITLWIPIYWLSGAIKSFTAMISLYTAIALIPIVPKALALRSPYELEVLNCELESKIKEKETAEKIIRQLNEQLESRVKQRTAELEQINRKLQVEVKERENAENALRENQRFTQRIADLTPNLLYIYDLIDNKTVYCNRFITEILGYTLPEIKQMKADIFSCLIHPDDQDKMKQYRQRCMNLRDDSYLEIECRLKDSQNNWHWIQTRKTVFSRTPEQKSKQILTIASDITLKKETELSIKKVNQQLAERVKELEDRTQEMILLGEMTDFLQACLSISEAETTLSDLLKPIFPDFSGAVFTLKASRDLLELVASWGDSVNTNNIISPDQCWGLRRGTSHLGKTHSPNLYCHHIQESESIGNTICVPMIAQGDTLGLLYLHSGSVEVITPSQKRLAEAISKQIAISLANLKLRETLQYQSFRDPLTGLFNRRYLDASIDREFHRVVRENKPLGIIMVDVDHFKQFNDTFGHDAGDIVLKRIGTFLQENVRQSDIACRFGGEEFTIILPHASLENAIERAEQLRLGIKQLHIQYGNQSLGLITVSLGVSAFPNHGENPRELLQNADLALYQAKEQGRDRVISVDLIR
>NC_010546.1|WP_009544036.1|1212157_1212910_+|sucrose-phosphate-phosphatase
MADFLLVTDLDQTLVGDDTALIILNELLQKKRREYDIKIVYSTGRSLELYDQLNQEKYLLSPDALITSVGTEIYFNPIKDNFDLQWANQVSENWDREAVFSVASHFADLVLQPLSEQTPFKVSYYLSENIAQEVIPRLKADLAREKLETQVIYSASYTLDILPKNGGKGAAVQYLRGKWNLSADKTVVCGDSGNDITLFQGEERGIIVGNAKSELLQWYYNHKTPFRYLAKQHCAKGILEGLNHFGFITT
>NC_010546.1|WP_009544037.1|1212921_1213560_+|Holliday-junction-branch-migration-protein-RuvA
MISYLKGSPIEVIKNTNNRVILVLEVNEIGYELQIPSKLGREISQEKLDTIQIFTHVQIKEDQQILYGFSTTAERELFRQLISVSGIGAQSAIALIDTLGLEELVQAIVTGNIRILSQPSGIGRKTAERIALELRTKLSQWRKMVGVTVTSSAAMPSLEILEDIEMTLLALGYTNEEINKAISTLSQDNLMLKNTNTEEWIKEAIAWLSQGT
>NC_010546.1|WP_009544038.1|1213563_1213848_+|hypothetical-protein
MSLSRIQQLEQYTITHPQEVLLITVKLEEEIDQLMIFKGFSSSIMKPTEFNPDVPMLSDTANIISIDRIKSPYNPNNPNYIQKELTWKEMESLL
>NC_010546.1|WP_009544039.1|1213891_1216198_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTAPFTPEEIAAEGIKPSEYEEIVKRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKNFPTEGDRILVGPGENAGVVDLGEGLRLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIASLNSLRFGDLENAKTRRIFSGVVEGISHYGNCVGVPTVGGEIYFNAAYNGNPLVNAMALGLMETKDIVKSGASGIGNPVLYVGSTTGRDGMGGASFASAELTDQSMDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAANGGVGIELDLDKIPVRETGMVPYEYLLSESQERMLFVAQKGREQELIDIFHRWELQAVVAGEVIKEPIVRILFKGEIAAEIPANALADNTPIYHRELIETPPEYAQKAWEWKEDSLPSCTAEGIEIEGELKTWNNVLLTLLDTPSIASKKWVYRQYDHQVQNNTVILPGGADAAVIRVRPIDAKPDTCKIGVAATTDCNSRYVYLDPLEGAKAAVAEAARNLSCVGAEPLAITDNLNFGSPENPIGYWQLALACQGISQGCKEMNTPVTGGNVSLYNETVDSQGNPTPIYPTPVIGMVGLIPDITKVCGQGWQNEGDIIYLLGVDKNPTLGASEYLATIHEIVAGKPPKVDFDNERLVQEICRKGISQGWIKSAHDCADGGLSVALAECCISSTLGAEIQLNAKEKIRLDSLLFGEVCGQIIVSVSLENQQEWESYLQENLGKNWQKVGTVVSDQLKVTLSDNSSVIHVTVEAMINMWSNSIERRLKS
>NC_010546.1|WP_009544040.1|1216561_1218055_+|amidophosphoribosyltransferase
MSAKKKPSPTYQLLDSSFDGDDYPLDKPEEACGVFGVLAPEREVAKLAYFGLYALQHRGQESAGIATLENDIIHVHKDMGLVSQVFKEETLQKLTGTLAVGHTRYSTTGSSHKANAQPAVLTTRLGNLALAHNGNLVNTLELRQTLEQRGCNFNTTTDSEMIAVAIAQAVDQGKDWLEAAASAFQLCSGAYSLVIGTPEGLMGVRDPNGVRPLVIGTLDDNPRRYVLASETCALDIIGADYLRDVEPGELVWITEEGLSSFHWAKEPQRKLCVFEMIYFARPDSLMHDETLYSYRVRLGQQLARESCVKADLVMGVPDSGIPAAIGFSQVSGIPYGEGLIKNRYVGRTFIQPTQHMRESGIKMKLNPLKDVLNGKRVIMVDDSIVRGTTSRKIVKALRDAGAKEVHMRISSPPVTHPCFYGIDTDNQSQLIAARNSVADICEQIGVDSLAYLSWKGMLEVTGEDPNSFCSACFTGDYPISIPDDIKRSKLMLEQVNA

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Crispr_ID: NC_010546_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_5

1439982-1440110

Orphan

Consensus_repeat	Method
GGCGGTTTGAGGGGTATCTTCTAATAAACAGGTTAAGGGAGTGAGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_5

>merge|NC_010546|5|1439982-1440110|CRISPRCasFinder
GGCGGTTTGAGGGGTATCTTCTAATAAACAGGTTAAGGGAGTGAGTAACGAGGTGGCTAGGGGATAAAATTGACCTGTTAGGGCGGTTTGAGGGGTATCTTCTAATAAACAGGTTAAGGGGGTGAGTAA

>NC_010546|5|5|1439982-1440110|CRISPRCasFinder
GGCGGTTTGAGGGGTATCTTCTAATAAACAGGTTAAGGGAGTGAGTAA	CGAGGTGGCTAGGGGATAAAATTGACCTGTTAG
GGCGGTTTGAGGGGTATCTTCTAATAAACAGGTTAAGGGGGTGAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009544237.1\|1434558_1436037_+\|BCD-family-MFS-transporter	unknown	unknown	gnl\|CDD\|349950
NC_010546.1\|WP_009544235.1\|1432226_1433879_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544236.1\|1434037_1434409_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010546.1\|WP_157861271.1\|1443397_1444024_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544239.1\|1437582_1439346_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227904
NC_010546.1\|WP_009544244.1\|1444217_1445723_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544251.1\|1450997_1451399_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544233.1\|1430677_1431400_-\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|226692
NC_010546.1\|WP_009544231.1\|1428585_1429908_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237177
NC_010546.1\|WP_024750264.1\|1431403_1432111_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_010546.1\|WP_009544238.1\|1436075_1436753_+\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|335247
NC_010546.1\|WP_009544241.1\|1440495_1441518_-\|long-chain-acyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|184944
NC_010546.1\|WP_009544230.1\|1427832_1428384_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369248
NC_010546.1\|WP_009544248.1\|1448771_1449416_+\|CHRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377837
NC_010546.1\|WP_009544247.1\|1448098_1448413_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_182670733.1\|1445916_1447770_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_010546.1\|WP_009544246.1\|1447771_1448041_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_010546.1\|WP_009544252.1\|1451618_1453904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239801
NC_010546.1\|WP_009544232.1\|1429940_1430687_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749
NC_010546.1\|WP_009544242.1\|1441783_1442785_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009544237.1\|1434558_1436037_+\|BCD-family-MFS-transporter	gnl\|CDD\|349950	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily. The bacteriochlorophyll delivery (BCD) family, also called PucC family, is composed of the PucC protein and related proteins including LhaA (also called ORF477 and F1696) and bacteriochlorophyll synthase 44.5 kDa chain (also called ORF428). These proteins are found in photosynthetic organisms. Rhodobacter capsulatus LhaA and PucC are implicated in light-harvesting complex 1 and 2 (LH1 and LH2) assembly. PucC may function to shepherd or sequester LH2 alpha and beta proteins to facilitate proper assembly, as well as deliver bacteriochlorophyll a to nascent LH2 complexes. The BCD family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.13856e-140
NC_010546.1\|WP_009544236.1\|1434037_1434409_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.87668e-13
NC_010546.1\|WP_009544239.1\|1437582_1439346_+\|membrane-protein	gnl\|CDD\|227904	COG5617, COG5617, Predicted integral membrane protein [Function unknown].	1.28562e-12
NC_010546.1\|WP_009544233.1\|1430677_1431400_-\|DUF2232-domain-containing-protein	gnl\|CDD\|226692	COG4241, COG4241, Predicted membrane protein [Function unknown].	3.7558e-47
NC_010546.1\|WP_009544231.1\|1428585_1429908_+\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00367283
NC_010546.1\|WP_024750264.1\|1431403_1432111_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.01235e-45
NC_010546.1\|WP_009544238.1\|1436075_1436753_+\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|335247	pfam03167, UDG, Uracil DNA glycosylase superfamily.	4.11649e-16
NC_010546.1\|WP_009544241.1\|1440495_1441518_-\|long-chain-acyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|184944	PRK14982, PRK14982, acyl-ACP reductase; Provisional.	0
NC_010546.1\|WP_009544230.1\|1427832_1428384_-\|alpha/beta-hydrolase	gnl\|CDD\|369248	pfam07176, DUF1400, Alpha/beta hydrolase of unknown function (DUF1400). This family contains a number of hypothetical proteins of unknown function that seem to be specific to cyanobacteria. Members of this family have an alpha/beta hydrolase fold.	4.36744e-49
NC_010546.1\|WP_009544248.1\|1448771_1449416_+\|CHRD-domain-containing-protein	gnl\|CDD\|377837	pfam07452, CHRD, CHRD domain. CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologs. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made. Its most conserved feature is a GE[I/L]RCG[V/I/L] motif towards its C-terminal end Most bacterial proteins in this family have only one CHRD domain, whereas it is found repeated in many eukaryotic proteins such as human chordin and Drosophila SOG..	1.68636e-29
NC_010546.1\|WP_182670733.1\|1445916_1447770_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_010546.1\|WP_009544246.1\|1447771_1448041_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.40621e-24
NC_010546.1\|WP_009544252.1\|1451618_1453904_-\|hypothetical-protein	gnl\|CDD\|239801	cd04273, ZnMc_ADAMTS_like, Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.	0.00148753
NC_010546.1\|WP_009544232.1\|1429940_1430687_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	7.24991e-88
NC_010546.1\|WP_009544242.1\|1441783_1442785_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	1.374e-34

>NC_010546.1|WP_009544239.1|1437582_1439346_+|membrane-protein
MKLETILDKIKPKGAGLSRQLSLRPYLLEGIIVALLIIATIIINYKMIKDGINGKVDLKWHLTWIQHFSKQLSEGIWYPRWLAGTNYGYGSPTFVFYPPFVYYLGSFLKLTGLNTQDVVITLFSLALFLSGFTFYLYGRTQWGRTAALLGGFAYMTVPYIAFDIYWRGGLASVFVQAWIPLLWWSTDQSLSEKKWRFTLPMSWTLIALTHTPSLLVCAIGWFPYVLFSLLNRPWKAVVKTIVSAGIGWGMASFYLLPAILEKRFVNIEVMRGIWGGAAANLLNFRDIFTNIHQDQIVYIFSHQALVILILIIIACFIHRYQSDIIQKIQPWLVFILALVFIMSSFSELIWDMSPTLQMLQFPWRFLQIFSFVGAVLFTIVVNGILTLPLSPRFLLSTIIIGLLFFNFSYSYKVSRKYVTLRNPGRGSIEHLSHIVTILEDPYTNKLRDVEEYRPLIEEEPSSPPVPLQGQPKLSVMSGEANIEIEQWKSYHRVFSVRVEKSSKLRIRLYYYPAWHLYINQKSSPITMSKDGTIELQLDPGFYNVELRYQWTLAFTIGVIVSFLSFATLIFLNRNVGRNLHVLNQESI
>NC_010546.1|WP_009544238.1|1436075_1436753_+|uracil-DNA-glycosylase-family-protein
MTEIKPLLEKIRCEAERETFPLDTPIYEAAGKNPTEPVLYAGNLNSKICFFGRDLGRDEVAKGQPLIGSAGTMVRKGFYQGIYHQEATSPEDLQAICDRALLTNTVPYKPPGNKAYSVKVKERFRPFIEQLLVIYWGGTQIVTLGTEAFKWFTPYAPKEDIEAFWKRSDRYEKQFAVTLEAVDFQGTKYQHPVSLLPLPHPSPLNKRYYAKFPQMLQHRLNELEF
>NC_010546.1|WP_009544237.1|1434558_1436037_+|BCD-family-MFS-transporter
MTINDIPETFDPKPLKPLPKIKLLTMFRLGLFQMGLGIMSLLTLGVINRIMIDELTVLPWIAATAIAMYQFVSPARVWFGQLSDTKPIKGYHRTGYVWIGAILFTSLAFVALQVVWQLGSSIQANGWNWISYGWAIFLGVIFGGYGLALSMSSTPFAAMLVDVSDDDNRSQLIGIVWSMLMVGIVVGAIVSSQLLNTPEICGQAILSYDPTDTAKIANIPTLQATVDPVFIIMPVVVLVMCFLATWGVESRYSRFGMRSQTVQREDQIGLKDALNVLTASRQTGLFFSFILILTLSLFMQDTVMEPYGGEVFGMCISETTQLNAFFGTGTLFGIASTGFLVVPRLGKQRTTKLGCILAVGCFVLIVLAGATASQSLLKSGLLFFGLASGMITAGATSLMLDLTVAETAGTFIGAWGLAQAIARGLSTVLGGVVLNFGKLIFTVPVLSYALVFVIQGLGMILAIWLLGKVNIQEFRDNAKSALSMVMEGDLDG
>NC_010546.1|WP_009544236.1|1434037_1434409_-|Uma2-family-endonuclease
MVSTLYKWSIDEWHKLVDSGVLEGKPVELLEGDIVKMSPEGIEHSYTNQSVSDYLRDLLKGQAQVRDSHPITLDNSEPEPDIAIVRLPQTIYCNHHPYAQDIYWLIEVSNNTLQKDLEQKVIK
>NC_010546.1|WP_009544235.1|1432226_1433879_+|hypothetical-protein
MTVQDNVQSLISELEQILWQDKLKEYPEVSILLERIRHHLLMGQSSLENHYDIHAERLSEIILNRVDHKISDRILQGELQQLHYQRDALLQEIKTLESQKQTLLSNFVQELSTDRELSLSQIKNSQVNYLNESLETDFQPLLEDLHLYSDALQAGIERMYRLGQQSETKFLAYLNRLQEKLELFLQDEKTKNKMMIPDDWFLGFDITTHNLSGYLFTYHITDDSLEKIKCYSLSELVELCSLKLVNHESIIENVKEKLTALHHIFNDNSLKIENDISVKNIIENIKKIVLICPSRWNEKDRNLLKNLIVENFKISQFKEVICIPKPLALTLSNCSQHPSDNSVLSCVINLTETRTELSIVDLSQELSGTMTQQLFYGTQGIDQDILCYLIYPQWYDQITLTFPPVPQPLPTPGIAEISRRKILKQYLENNSLGNDLIEAAQLTRLILQEQEEFTSTLTQKSWSVNRQEMIKKVINPWIKTINEKLKIMLSQGQYSPDSITHIILAGEGINSLDHALIPWLTQRFCKAKVISAEKRVNDDQIFIGLNNLLI
>NC_010546.1|WP_024750264.1|1431403_1432111_-|Crp/Fnr-family-transcriptional-regulator
MEDIKNYRNQSSDLRESLKTAPFFNGLPEESLELVMSHAVIRTHPANRVILLENDWGGSVYFILDGWVKIRTHNVDGKEVTLNIVGKGEVIGEMAALEEVPRSTDAITLTPTTISSIPSQDFVTLLHSDPIAGIRLAQVMAKRLRQINRRLRLREADSLSRVADTLLFLAEGQGKQTSQGIEIPNLPHRELSSISGLARETVTRSLTKLEKKALIKREDDILCIFSLDALEQIIS
>NC_010546.1|WP_009544233.1|1430677_1431400_-|DUF2232-domain-containing-protein
MDDSNWVDEGDELRNEPQPTPPKMPTSPLNPKSAKIRQTLAMVETAFLASAGSLIWLINYYFPLGPLLRIFFPIPIALLYLRWGSRSAWMGALVSGLLLTVLMGPTRSIVFLIPYGVMGVQLGAFWRRGVPWEFSMITGALLGTFGFFFRFWLFSILLGEDLWQYIINQMTGLAEWIFLRLGILAQPSAVFIQLLAVVLIFVNSLIYLFAVHLVALLVLDKLGNPIPRPPKWVQVILDYE
>NC_010546.1|WP_009544232.1|1429940_1430687_+|thioesterase
MKPSTNPWIYLPKPNTNAKIRLFCFPYAGGGTRIFRHWPNHLSDTLEVCAIRLPGREGRLLETPFFQLPNLLESLTPNLLPYLDKPFAFFGHSMGALVCFEVAHQLIKNYGILPLHLFVSGHSAPQLPNLDPPIHQLPESDFIKAIHDLNGTPKEVLKNEELMQLLIPMLRADFSVLETYVYQPKPLLTCPITAFGGLNDPETNETELAAWGQQTNQSFEQHMFPGDHFFIHSAESDIFLILQRSLYS
>NC_010546.1|WP_009544231.1|1428585_1429908_+|hypothetical-protein
MTLQPEIMKSVEQLGYRVTVGDVAAKSGLNINLAQQGLLALASDVSGHLQVAESGDIIYLFPENFRTILRNKYWKLQLKETWDKIWKVLFYIIRISFGIILIASIILMLIAITVIIIGISSSRDGENNSSSGGRSYRGGGFFFFPNFGDLFWIFYPDYGYRRYGSSRRHQTRDSNEMNFLEAIFSFLFGDGDPNYNLEERRWKTIGNVIRNNKGSIIAEQVAPYLDNIDRYNQENEDYILPVLTRFNGTPEVSPQGELIYYFPELQVTVQESSQKSIASYLREKLYKFSEASSSQVMLAIGLGAINFILALVLGSFLRDPSLVAQFGGFIAFINSIYWLLLGYAIAFLGIPTIRYFVIQARNSKIEERNSKRQERTKLLQDKDETIQHKLEYASQFANQAILQQSDITYTTEKDILQQEIEQADKIDQEWQKRLESLDDN
>NC_010546.1|WP_009544230.1|1427832_1428384_-|alpha/beta-hydrolase
MMMTQKKKLSKKPQIMLSLLFSLLGLFSAKVPAQAAERVILKYSILRESVSVEELSHLANTGEASRSLRSYLKLANKEPEELRTLLNNNVDVDPVFLSKALNSFAGGIVLDPIGEVIHTPSKRANRESLRGALVTSALSDKNIRLIEIFENYPTEEIHVDGDRLAEIYQSIEGFVSKVPRLPF
>NC_010546.1|WP_009544241.1|1440495_1441518_-|long-chain-acyl-[acyl-carrier-protein]-reductase
MFGLIGHLTSLEHAHSVADAFGYGPYATQGLDLWCSAPPQFVEHFHVTSITGQTIEGKYIESAFLPEMLIKRRIKAAIRKILNAMAFAQKNNLNITALGGFSSIIFEEFNLKENRQVRNVSLEFDRFTTGNTHTAYIICRQVEQASAKLGIDLSQATVAICGATGDIGSAVCRWLDRKTDTQELFLIARNKERLQRLQDELGRGKIMGLEEALPEADIIVWVASMPKGVEINAETLKKPCLIIDGGYPKNLDTKIKHPDVHILKGGIVEHSLDIDWKIMETVNMDVPSRQMFACFAEAILLEFEQWHTNFSWGRNQITVTKMEQIGEASVKHGLQPLLSW
>NC_010546.1|WP_009544242.1|1441783_1442785_+|UPF0104-family-protein
MTKNPIFRWLPPCVSLGLFALSLWTIQQNLQHYQAENFWRSLAKIPSTHICLAIALMGVNYFIMTGYECLGLAYVRQSLPYAKKALVGVICSGISNSVGFAVLSSCMIRYRFYSVWGFSVVKIAQISAFCNLSFCLGLFVVGSIIFLKEPLAIPQLLDLPFISVRPLGIIFLVTTLAYLFLTVIRQKPLMIGKWIIPHLPFPLAAGQLIVSALDWCLAAAVFYTLLSSSVSLSYPAFFGIYMLAQVAGLASNIPGGLGVFETVMMLLLAPFITSEDLLGTLLIYRGIYYFIPLMVAASLLGKYEFQNFLNQKESNSESVSRLSTPVRETIDIE
>NC_010546.1|WP_157861271.1|1443397_1444024_+|hypothetical-protein
MLSLAGTFIVLGTIHSAQGAVVVSPSNGNPVEKITGVEVLNSDGSAIEIFTVDFQFDTFVTTFGNTPSSQAFFLDNSDGALLALTAINDAMNAMTLTNQQVRGITSFAPDSGPIINLMNYRIPILFDPNDNEVETMIGQFTNGAWVGGTTQMELADGNPPNGLVMYAKFTKTGEIDLTPTPPTVPEPSNLVSILVCGVSLLFVAKNRI
>NC_010546.1|WP_009544244.1|1444217_1445723_-|hypothetical-protein
MPTLISPLKLAATSAILGLTVFNINPVKAATWVRNGIIVSKDNYSDTRFPGINFGDNDYLAVGQLDGQTGKQVAYLGFDFQSLVSDLTPYLDAGAQIRNLRATLLFNQTYDALQNPNTDPSFPPVPTINIREVDYNSWNEETPIDPDRENNGTIFFGGGISEGRNSRFNTSVDGTFNTFIRNLLQNKTSEFSLAIEPVETFDLPFPPFNTFPGDTLFSSEGGNSDQQPRIDLSFELWNESFKILDSNNPTPNFKLNSLAGGDTFKEHRLVKGRDRQDQVLDQVDWLWSNNTPTEFEFQCSNNRATVTFFANDDNNTDRVISSQVNTCQNIEGLKLFSVVKEVAANTSMEICVDEAGSLTNLTPINNFCSSSNLAVTNGLDREEKFFYFTDPTNRGGLGLTPTRMRGQITMGWENGNNPQEASANQRVAIQLIPLSTYQDPNPPNNQQDINEQSTNTNELSNVASVPESANVASVPESTSVVSFILLGLGGIPLKLSRKNRN
>NC_010546.1|WP_182670733.1|1445916_1447770_+|excinuclease-ABC-subunit-UvrC
MSTLSEMLDHQIRLLPHEPGVYLMRDYQGDILYIGKSKRLRSRVRSYFQPGQDHSPRIALMVQQVANIEFIVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEAYPRIFITRKRRLNHPRDRYYGPYVDTHLLRQTLRLVKRVFPLRQRPRPLFKDRPCLNYDIGRCPGVCQGLISPEDYHKIVEKVAMIFQGRTEELLEKLSAQMELAANQLKFEQAGQIRDQIKAVQGLGIDQKVTLPDDTISRDAIALAADDNYTCIQLFQIRAGRLVGRLGFFADTVSGTPESILQRVLEEHYLQVDAVEIPSEILVQYPLPETDILANWLGKKKGKKVNIIVPQKQQKAELIRLVERNAGYELENTKRHAQQNLLALEDLAQLLDLSSLPHRIEGYDISHIQGSNAVASQVVFIDGVSAKQSYRHYKIKNPNITIGHSDDFASLAEVLSRRFRSYQNKSETELLQLEDYPDLIMIDGGKGQLSSVIKILENMNLVPPLQVISLAKKREEIFLPGQSQPVTSHPEQAGVQLLRKVRDEAHRFAVTFHRQQRLKKSRHSRLDDIPGLGFQRQKQLLAHFHSIDYIREASIEKLQEVSGVGPALAREIYDYFHPN
>NC_010546.1|WP_009544246.1|1447771_1448041_-|EAL-domain-containing-protein
MVQNRFSLDTIDRSFINEVTNNTASANIVEGILYLSQKLNLTTTAEGIETPEQKDFLQNSGCQYAQGYLCSLPLSSDNVISFIRKQCKL
>NC_010546.1|WP_009544247.1|1448098_1448413_-|hypothetical-protein
MLKLRDFWIVIAIVCFSMGLYDLVQVKSANQSGDLLQETRSRANAYTEIGFGVGSIIIYQLARINAKLKEFNETLKTKNRGSQESMTTLPKSVRKIKPLESHKN
>NC_010546.1|WP_009544248.1|1448771_1449416_+|CHRD-domain-containing-protein
MLFQLFKTMNPHHHSLLTLVKGILKQKSLAVTCTSGMALALSFPLSTNAMVLNFQADLTGDQEVPPVLTTAQGSAEGTLTGAPGSYVFTYEINYSGLSSPIAPIGATGGHIHNAPAGFNGPIVHILDTDFFDYTGTTEGTIIGDWRFDDATNPLTDLLADSLKSGNLYFNLHTENFNGGEIRGQITSVPEPNALLGFGLLAGTAFGFRKKQRQR
>NC_010546.1|WP_009544251.1|1450997_1451399_+|hypothetical-protein
MPRTESELQKNQRTDGIREAIDALKREISEIEASGWIAPRDCYIVRYRAKGAKYRYWYYQLKASSAVFPKANKKGEFSRFKHLGKAGSQAHIDGVNAVIRRSKIDQLTSAIEALYESLLDLYPDEEKPGHRVE
>NC_010546.1|WP_009544252.1|1451618_1453904_-|hypothetical-protein
MKKPPLSPFSTIANCCRRLATVGLAIFFLWTTAIPSVQAGNNLISVPLRWCVIGEDANNDGTFDPGERGVPAFTNPGGVGEPDTDNVLWRRHERASDNIWIPGANITFRSGITAAIRDQATFPIIADPSPPENGGVGQYGDILDPQINGQELNQAITACNTAWNNLAMQFNTTLVGPIALNLRQFVNNAGNPTNLIGWGGFTGLNGGANTCATPPTNVTSAIGGSASVVDNSFRLAIDPIDALLAHELGHVLRLGHGNGLDDDNDDVYDDNIFNCDPNENVNAPPPNMMAPTVGSGVITTLQRQTSRPVALVYSGSQIDPPAALINGDTLSDQRVDEVQEVTDESVDLAWISMIENEPTQTTIFSHRVFGLIDQSTDVRQYLIFADLDDNPGTGGNPADLGFATSFQGAELVTRVEVSGIVIPITSTPQSISATPPLAATGTVWRFENGDFVKSEGPNIRANAIAPIGGETPLPLFHLVSIEMPNSVRGSAEPQVRLQAIAQRLTPQGQFDRLPSEPRDGGVDIRLIPPQFPTCSVRPPSVSAGRIATIEASDLIENETAKVFLGDQLLGTVPIDEAGNVKADFIIPNNANRGPRLVTVGVMGTALTADCSVDLTRPQLSRYEYTPKLVCGLQKEAKNMQLARGFYGTTINIHNPGLSTVQFDKKLVLTIPPGNQQSGRVLPIGRDELESQQGLAVDCDHIRKKLFDGKWPNFFIEGFVTIESPESLDVTSVYTTANLGYWGKAKNHSSIDVEQIRERINK

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Crispr_ID: NC_010546_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_6

2189114-2189215

Orphan

Consensus_repeat	Method
TATTCAACTAGGTTCTCCTGTTCGGAGAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_6

>merge|NC_010546|6|2189114-2189215|CRISPRCasFinder
TATTCAACTAGGTTCTCCTGTTCGGAGAAAGCTGAGTCAACAATTATTTGACGAGTATTTTGCGATGTTTCTATTCAACTAGGTTCTCCTGTTCGGAGAAAG

>NC_010546|6|6|2189114-2189215|CRISPRCasFinder
TATTCAACTAGGTTCTCCTGTTCGGAGAAAG	CTGAGTCAACAATTATTTGACGAGTATTTTGCGATGTTTC
TATTCAACTAGGTTCTCCTGTTCGGAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009546912.1\|2195260_2196676_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546914.1\|2197737_2201034_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_010546.1\|WP_009546900.1\|2181855_2182203_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_010546.1\|WP_009546911.1\|2194719_2195127_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546907.1\|2191270_2192560_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_010546.1\|WP_009546905.1\|2189439_2190501_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NC_010546.1\|WP_009546894.1\|2178758_2179028_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546903.1\|2185537_2186167_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_010546.1\|WP_009546899.1\|2181593_2181863_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546910.1\|2194199_2194607_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546909.1\|2193658_2194117_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546895.1\|2179024_2179450_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350298
NC_010546.1\|WP_009546898.1\|2180010_2181291_+\|DNA-sulfur-modification-protein-DndB	unknown	unknown	gnl\|CDD\|379453
NC_010546.1\|WP_009546906.1\|2190484_2191234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376158
NC_010546.1\|WP_009546901.1\|2182208_2182940_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_010546.1\|WP_009546908.1\|2192592_2193363_-\|DUF3887-domain-containing-protein	unknown	unknown	gnl\|CDD\|379023
NC_010546.1\|WP_009546902.1\|2183158_2185477_+\|DUF3488-domain-containing-protein	unknown	unknown	gnl\|CDD\|224224
NC_010546.1\|WP_009546913.1\|2196707_2197733_+\|DUF1822-family-protein	unknown	unknown	gnl\|CDD\|370155
NC_010546.1\|WP_009546896.1\|2179545_2179797_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009546904.1\|2186173_2188828_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009546900.1\|2181855_2182203_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	2.12303e-09
NC_010546.1\|WP_009546907.1\|2191270_2192560_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_010546.1\|WP_009546905.1\|2189439_2190501_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	8.65786e-34
NC_010546.1\|WP_009546903.1\|2185537_2186167_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.02521e-33
NC_010546.1\|WP_009546902.1\|2183158_2185477_+\|DUF3488-domain-containing-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	9.78538e-20
NC_010546.1\|WP_009546913.1\|2196707_2197733_+\|DUF1822-family-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	3.86245e-44
NC_010546.1\|WP_009546895.1\|2179024_2179450_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350298	cd18731, PIN_NgFitB-like, VapC-like PIN domain of Neisseria gonorrhoeae FitB and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Neisseria gonorrhoeae FitB toxin of the FitAB toxin/antitoxin (TA) system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. In N. gonorrhoeae, FitA and FitB form a heterodimer: FitA is the DNA binding subunit and FitB contains a ribonuclease activity that is blocked by the presence of FitA. A tetramer of FitAB heterodimers binds DNA from the fitAB upstream promoter region with high affinity. This results in both sequestration of FitAB and repression of fitAB transcription. It is thought that FitAB release from the DNA and subsequent dissociation both slows N. gonorrhoeae replication and transcytosis by an as yet undefined mechanism. The toxin M. tuberculosis VapC is a structural homolog of N. gonorrhoeae FitB, but their antitoxin partners, VapB and FitA, respectively, differ structurally. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.16246e-79
NC_010546.1\|WP_009546898.1\|2180010_2181291_+\|DNA-sulfur-modification-protein-DndB	gnl\|CDD\|379453	pfam14072, DndB, DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.	2.03532e-68
NC_010546.1\|WP_009546906.1\|2190484_2191234_+\|hypothetical-protein	gnl\|CDD\|376158	pfam18735, HEPN_RiboL-PSP, RiboL-PSP-HEPN. RiboL-PSP-HEPN. Fused to endoRNase L-PSP ; in operon with ParB.	8.15777e-06
NC_010546.1\|WP_009546901.1\|2182208_2182940_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.11391e-20
NC_010546.1\|WP_009546908.1\|2192592_2193363_-\|DUF3887-domain-containing-protein	gnl\|CDD\|379023	pfam13026, DUF3887, Protein of unknown function (DUF3887). This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.	9.58834e-10
NC_010546.1\|WP_009546914.1\|2197737_2201034_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	3.836e-08
NC_010546.1\|WP_009546904.1\|2186173_2188828_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0

>NC_010546.1|WP_009546904.1|2186173_2188828_-|DNA-mismatch-repair-protein-MutS
MFSYSESNLNPNIATSKSPHTDYRPLEVKKLTPMYQHYVKVKQQYPNALLLYRVGDFFECFFQDAVTISQELELMLTSKEGGKEIGRVAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAQAAAQGRMVERQITKLLTPGTLTDEGMLSAKQNNYLAAVVIAGEHWGLAYADISTGEFFTTQSKELTNLNLELLRLQPAEILIPTNAPDINSLLRPGEKSQYLADVLPDCFCYSLRSQTPFTLNEAKSKLLINFRVRSLEGFGCEHLPLAIRAAGGLLEYIEDTQKAHQVPLQLLRTYNQVDFLILDYQTRRNLEITQTVRDGSFHGSLLWALDRTCTAMGGRALRRWLLEPLISIKGIIARQNTIQELIDNPTLRQEIRQLLRSIYDLERISGRVGAGTANARDLLSLAESLVKLKELAELAQQGESLYLKALQNIPPDLEKLGHYVIDHLVESPPLHLKDGGVIRDGINADLDTMRKRLEDDRQWLANLEISERERTGVSNLKVGYNKTFGYYLSMPRSKAEQAPDNYVRKQTLTNEERYITPELKERETRILTAQDDLNKLEYEIFVELRLKVAEKAQEIRKIAKAVAAIDVLSGFAEIAVFQGYCRPEILDSRLIEIADGRHPVVEQSLGFGLFVPNSTNMGRNEGETSPDLIILTGPNASGKSCYLRQVGLIQLMAQTGSFVPATEAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATEKSLILLDEIGRGTATFDGLSIAWAVAEYLATEVQGRTIFATHYHELNELASILFNVANYQVTVQELPHEIVFLHQVRPGGADKSYGIEAGRLAGLPASVISRAKQVMNQIETHSKIALGLREGISQINPKNNKNNKAELIEQLDIFDDF
>NC_010546.1|WP_009546903.1|2185537_2186167_-|methyltransferase-domain-containing-protein
MNEHTIRSQYNKLANIYDKRWHHYHSNSLSFLKNWVNISAQSTVFDVACGTGIFAEMLLQDQPNLQIIGVDISSEMLKIAKEKCQNYSNVEFHQFSVTSLPFENNNFDYVICANAFHYFDDPITALKEMKRLVKPDGQIIILDWCRDYLTMKICDLILTLFDASHKNCYTQTELSQFLASTELQIIDNTKFSFSWVWGLMIFTASPNFS
>NC_010546.1|WP_009546902.1|2183158_2185477_+|DUF3488-domain-containing-protein
MTNTSRKSLSLFQQFRQQIKSAPPLKTEESAIFRILVQCLVIVGIIATDIAAGTQMSFWAIPLSIIGGVWSWYRRKHRNITLKFFLAIGMLAVLSFFLLHLTQNLNDSRLVLAELLVQLQVLHSFDLPRRKDLGYSMVIGLILLGVAGTISQTIAFAPWLLLFLILAIPTLVLDYRSRLGLEAVDQSFKLPFKSRKASRNPIKYSPISFKSITVLIAITLVFGLSIFTLMPRFPGYQLQTFPVDSPLDADSQKFSGQNKGIVNPGYNNQENGTGSNGQGTNNNVSQGQGEVDDTYYYGFNTKINQNLRGEMKPKIVMRVRSQSPGFWKALSFDHYTGQGWEITNDKDFDTIRRDRWSYKFFLHLPNSAMKTKKVIQSYTAVADLPNIIPSLSSPKHLYFPAQEIGIDDLNNLRSPVGLVEGLTYTVVSDVPYRDRTALQKSPPEYSDKIKETYLDVPLDIEEKVREKTLEILNRSEKPLNSPYEVALFLTQAVKQKYAIQEELPFFDKDEDLVESFLFKYEGGISDHFSTVLTIMLRSVGIPARLTVGFAPGKFNPLTGFYVVKNTDAYALTEVYFPHFGWYPFDPIPGHDLFPASLEEDQTFSVLKQFWNWIAGWLPSPVANFFNIIWTKIIVGFISFLGWLWRFFSSGLIGTLVGLLLAVVLGLLGWLGWGQLRKLGYYHRLTKLPPMVQLYEKMLGVLKSKGYPKHYAQTPLEYVEISYQQHRDEQAEIIDEISHAYVSWRYGENGQNLNYLKQQLKVLVKSLNRRNAS
>NC_010546.1|WP_009546901.1|2182208_2182940_-|Uma2-family-endonuclease
MTTLNVPSDVICPPTDLWSDEPPLESDLHLQQIILLLSCLESFWSDRNDYYATGNLTIYYNTEQLKKRDFCGPDFFVVLNTEKRPRKSWVVWGENGQYPHVIVEILSDSTAKVDRTKKKELYRNIFRTPNYFWFDPVSLEFQGFRLSQGKYEPIQPNEKGYLWSDQLELYLGIHDGKLRYFTPEEELVLTPQEKVKDLENNQLLAVIRLQELGLTLEQIADALSLSVEQVRTILSQQSSDSSN
>NC_010546.1|WP_009546900.1|2181855_2182203_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSNPKTREIWLVRFPFSDLTATKLRPALILAVHREKQIILGVFSKIPLGNWRETWVIISENHPNFSQTGLKKTSVIRTDKIATVNRSVFQRKLGILPSDILNQVQTALKKSLNIS
>NC_010546.1|WP_009546899.1|2181593_2181863_+|hypothetical-protein
MVMMMDALVEKLNNKLHQWKPDIAEQVRQYITEIIELADQDGLELLHSRISEQEIEHKLETEAFMKLAETGFPEWNDPEEDIYEDHNNV
>NC_010546.1|WP_009546898.1|2180010_2181291_+|DNA-sulfur-modification-protein-DndB
MDSIFSDSKTINNSSDVFSGNISDLVNSELVESIQQSIQPIMVKGYRKGQTFLAVGSQHGKRLMLQINVHASEIPTLLTSRNVPEDSNNPNSGKNRPINDNHVRKIKNYIKERIKADNKWILGTITANIDPEPTKILYQKIWGDLYVAFIFNSTSLEITDGQHRKKAIEQLLSEDRDLMADITFPVNLVLEGDLSQCQTDFRDMAQTLSIPQSLLVAYGGYGKDAIAKEIVEQVNLFRNKTQKIKSTPGSKTGYIYTINYVAKLVSCAFTGKSTDKLSEINTDELVEARAKELSECLNYFFYHYAQIANDFDKDSHWRKMAKLTGEIIEKEKVHWKVATDFRKNCILGISVGLETLGDLLFSTLDRESNQFDRNKVKQLAESIDWSRQGNCWQDTLISPDGKGGIKLNTSRKSVKVAVERCLEVST
>NC_010546.1|WP_009546896.1|2179545_2179797_-|hypothetical-protein
MTVGINEIVPYSSSDELIFAFPRSSELQQQGVNIQNQQLQTVAKDYPERLPSAVNAWLKWVSYTSVEHPTLSLIKAIKEHWKS
>NC_010546.1|WP_009546895.1|2179024_2179450_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MIILDTNVLSELMKRNGSEKVRTWASQYPIITLWTTTITQAEILYGIALLPEGKRHDDLQKAAELMFLEEFAGRVLSFDEKAAIAFAEIAFQRRRNGKPISQADAQIAAICRANKATIATRNVADFEDCGIEIINPWKWEN
>NC_010546.1|WP_009546894.1|2178758_2179028_+|hypothetical-protein
MTLTLNLTPEIEQCLRQKAAELGLSIEDYTLKLLADLVFKSEKSLNLSDSRLKACDLVTALDQRFSHIDNIELPEISRDAMRDIPTFTE
>NC_010546.1|WP_009546905.1|2189439_2190501_+|AAA-family-ATPase
MVKKIALFNHKGGVSKTTTTFNLGWMLATKGYRVILVDTDPQCNLTGMALGEATEEDEDRIERIYNTRSNIKTGLAPAFESQPRAIEAVDCIQIGDQEGLFLLPGHVGFAEYEVTLGIAQELSGSIQALKNLPGSITDLLNKTATKFNADYILIDMSPSLGAINQNLLMTSDFFIVPTTADFFSLMAIDSLSNILPKWYNWAKTASSLPILKEASYPFPDVTLKFLGIIVQNFRIIRGKETVAFEKWIIKIQEDVYNKLVPILQKHNMMFPETIYHEQGMNDSYCLTKIANFNSLIALSQEHRTPIYDLTSQQLGQGGVVLQKSQQKQEEFRETFSELADKIINLTSAYAVSH
>NC_010546.1|WP_009546906.1|2190484_2191234_+|hypothetical-protein
MQSAIDQFRISIQRVRDLISLHNSIKVQSTSALDLSDILRAALVLTVSALDYYIHEVVVLGMLEIYRGQRSEPNPSRNTSKSAFSRFKVSLGGASQERQIALDIANWLETEIQKNYGSEFLQQSYNLSQLLPMISNSMINRLNNTSWLEAEIRETLSYQSFQQPDKIADAIRLISDKKLWDEVGNNMNKPAKDIKQQLTLIVDRRNKIAHEADIDPTYNIGNRWPIDEILVSETVDFIEEVVENIHQIL
>NC_010546.1|WP_009546907.1|2191270_2192560_-|phosphopyruvate-hydratase
MLNKPVVSIEDITAREILDSRGRPTIEAEVLLETGAFGIAQVPSGASTGSFEAHELRDDDSNRYGGKGVLKAVNNVKDEIAPKIIGMDGLDQTAIDHTMIELDGSANKKELGANAILAVSLATAKAAADELALPLYRYLGGPLANVLPVPMMNVINGGSHADNNVDFQEFMIMPVGADSFKEALRWGAEVFASLSKVLKERKLLSGVGDEGGYAPNLGSNQEALDLLIEAIEKAGYKPGEQVALAMDVASSEFYKDGQYIYDGSAHSPQEFIDYLGKLVDQYPIISIEDGLQEDDWDSWKILTDTLGSRIQLVGDDLFVTNPTRLQKGIDMGVGNSILIKLNQIGSLTETLDTIALATRHQYSSVISHRSGETEDTTIADLAVATRAGQIKTGSLCRSERVAKYNRLLRIEEELGDRAVYAAKVGLGPQ
>NC_010546.1|WP_009546908.1|2192592_2193363_-|DUF3887-domain-containing-protein
MNWSLTSLKQNGLPLLVVTLVTGIGQLPVIAQVKLTPPPPVKLVQSSKQVDEEGLKEKAAQMMQLLTQEDYNQARTLLNRDLAVQLTSDQIGEIWSNLIEVTGPVKEIVSYRVIPSVNANIVVVETAFEDKTDDFVITFNQQGEIVGVDFPNVASIEEIAQIMVNSVAVNDFARARGYLHPSLKSEILPNRLQTAWQNIQRENGLFERIESIEVRPGSGVNAVDLVVVEAKFQKGIRKFFFIFDDNRRIVGINLAE
>NC_010546.1|WP_009546909.1|2193658_2194117_+|hypothetical-protein
MSFIKKSAAATVVILSSLMTFSPAVKADNTAINGQYSEQTGAAVGIGNRVNNTMRQSSFQGQRSSFGSGNNAASSTMFGSQTGVADGIGNRVGNRMGQYNNQQQNTRFGSGNNVGISEIGSGQTGAAIGGFNSVGNSGFQYNNQRQGNTFGF
>NC_010546.1|WP_009546910.1|2194199_2194607_+|hypothetical-protein
MKSIPFLFLSFAVFLIPLSINHQPADASCAMTDVSFQVAIRGSSTAAQQSNNVGMTTTGDCWGNATTNTSTQVYTGSGTVQQDRNSSHFVGGSQPFPYGVTGPVVGTQITVPVDIYSPAHDSTFMNHTMGSGVSF
>NC_010546.1|WP_009546911.1|2194719_2195127_+|hypothetical-protein
MSFLRSSFISLTCLVSLSSYHPIMAQEYESWVGNFEPEKHCNVYEVHNQRHGAEYDNRATVNDTIITESEHSNNQVSGANTGSQSQSVDLVRQQDCSTVIQSEAHRYGIYHQTQTTRYIHDTQTRQNFLGNLLAW
>NC_010546.1|WP_009546912.1|2195260_2196676_+|hypothetical-protein
MDQLTSYWQLYQVRSNGTEYKKKIEAAEKWLKDSYDLTQWTQEKILNNLLNIFKNTALDNLLDNLIEKGKSGLCLRCYISEYIVTACKKRASLFSSSQGVTYQALLPFVLDDDGKSLIIIDQEDKQQLEITDNGKFLPKSNNLFTVEVINSYKNSSDNQTKLSLRNWTYLKTKQNKKIVDFLAEFGFSNVTDWSLLNRVKKYELQQLTEQEQSIIKVYAEVYKRDRRQNQYILRSKCQPPSVEQLQEMINKLNVEKIQKPHTLLNELKRIAKQLRRVVVSLDSSLMDKEGETTTLEVPYHDVPIEEKEKLEIFNQIQDNLMHCFQTNIGKVVQNTIQKLQKSKSYSLYASQYIYVLKSFYQEGKSISNIAKEIGIEQYKASRIFSPKNLLKEVRKQTVDDLINAILKLIKERKLITEPFDHNYLTLLTETVEQYADKEIFAEASAQIMTSTNNNYENLYTQTLIEYLTQNS
>NC_010546.1|WP_009546913.1|2196707_2197733_+|DUF1822-family-protein
MTNRLMETSDFRLLIPEEIWLEQEDYDLAKQLSEIEGTEDKKWQAYINLLGMFALEKWLKENIYTQDIQRIIDRIDTYGYLQRKGFKFCLITQEDFLQEGMIVPRELIYNSDHTAHFYVAMEVLEEEEIAIIRGFISYDKLSQLSLPTIEDNNYWLFLDYLDPEPNHLLMTYKYLEPSTIILPQNIVNQVQENVQEAIINLSNWLEGMLEESWQNLEQLINTDAGLNFATRSLSEEKKVGKFIRLQMEFDEQIFVLLLTISPTAEDKLRIQVQLYPTNNQTYLSSEIKLRMYSKSGKLVKEVIAGKQDNYIQLPPFSASKDRQFKIEVNLNNASITETFRV
>NC_010546.1|WP_009546914.1|2197737_2201034_+|CHAT-domain-containing-protein
MILIINFGKGNLEEGFSYITLQLWSDYSPFPQQFTSCLPANLELKNSCNQWRLQYDQYHQRNSFDSRNNLDDNEDEFDFEDSVTNFSEVDFISFSNNLLETFNQWLNSDNFSNILEKIAAKLNPNEAIRLILNTDNDTLKRLPWSDWEFLNAYPKSEISLSRSHYIREEINIKLRNKVRILAIIGNTQGINVNQEKQWLNQLPDAEVYFLEKPCKDDIKTILSDTKGWDILFFAGHSNTKENTGILSINDSNERDVTINELRCHLKEAIKNGLQVAIFNSCDGLGIGDGLASLYIPITIIMREPVPNKVAQVFFHQFLESYANQKLSLYIAVKNARKKLETLDNDYLTASWLPMIFQNPSFSPPSWVELGGFSPCPYLGLNAFQESNADLFFGRETLINELEDLVKQNYFIPLVGASGSGKSSLIFAGLIPKLRQDINQNWRISWFRPNNNPFEGFVKAISQFTNNSYDRFQELQLELDLENDRTAISNCFNQIIQNFNYSSNLLLIIDQFEELFTLCNKSQREAFLKSVLTAINTVYKLTVIITLRADFLSYLLNSVEWGQLLKQYSPQYITSMNREELKSAIVKPAAFHGVKLKDKLVDQLIDDVYQEAGYLPLLQFTLTELWKQQKKGWLTYQDYETIGGVRTALANYAESVYQKFYQEEQEKIKKIFLQLVTLKENNQPTKKLVTKDNNFVRENWQLITRLASSHLLITNSLEKEITVEIAHEKLITAWPRYYQWIQEHQDFLRWRSQLSNNINQWRNCLQIKQDQPLQLRLFLSKKIEIWKNYQQQKGYLLKDSPLINARIWYKKRLHELAEEEKEFIEKSLKLRRNQKITISLISISVLGTISLVSIFAWVQSKERQLEQLIRYASSQVITSENLKTIIDVLPNYLNSANQREKSNQIKQAMDDYRQILRVANNTYEKIEKDPHIFQNVSNVQDKITNISQQAESSLAEMISKYRLPKLEQQLTNKQFGERKISQMINPDADTIEYDYTQTIYTDALKTTHDIIMSDIGAKTDQNSNDIIDEGEEKMIPCQTLIQIEKLWRKATNNQCGWYGEDNVWQSNCQPFKGNTLTNMLMYPSDVPLLENRLHQCQIL

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Crispr_ID: NC_010546_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_7

2664353-2664478

Orphan

Consensus_repeat	Method
ATAGGTTCGACTTGAAAGATTTATGCAGGTCACAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_7

>merge|NC_010546|7|2664353-2664478|CRISPRCasFinder
ATAGGTTCGACTTGAAAGATTTATGCAGGTCACAGAAAAATAAACTTGAGTTTCATGGGTGAGTTCTCTTGATTGTGTTCTGTTACTCTATAGGTTCGGCTTGAAAGATTTATGCAGGTCACAGAA

>NC_010546|7|7|2664353-2664478|CRISPRCasFinder
ATAGGTTCGACTTGAAAGATTTATGCAGGTCACAGAA	AAATAAACTTGAGTTTCATGGGTGAGTTCTCTTGATTGTGTTCTGTTACTCT
ATAGGTTCGGCTTGAAAGATTTATGCAGGTCACAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009544709.1\|2661990_2662962_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NC_010546.1\|WP_009544713.1\|2658614_2658839_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544701.1\|2671235_2674193_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_010546.1\|WP_009544704.1\|2665897_2668894_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_010546.1\|WP_009544712.1\|2658898_2659576_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_010546.1\|WP_009544698.1\|2678771_2680565_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NC_010546.1\|WP_009544710.1\|2661130_2661973_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|236017
NC_010546.1\|WP_009544696.1\|2682079_2682667_+\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|224712
NC_010546.1\|WP_009544697.1\|2680610_2681753_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NC_010546.1\|WP_009544705.1\|2664535_2665771_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
NC_010546.1\|WP_009544714.1\|2657564_2658494_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|379207
NC_010546.1\|WP_009544707.1\|2663440_2663800_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544702.1\|2670558_2670981_-\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|225556
NC_010546.1\|WP_009544708.1\|2663051_2663423_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544706.1\|2663902_2664196_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544700.1\|2674311_2676024_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223651
NC_010546.1\|WP_009544703.1\|2669364_2670558_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NC_010546.1\|WP_009544711.1\|2659585_2660992_-\|DUF2079-domain-containing-protein	unknown	unknown	gnl\|CDD\|370724
NC_010546.1\|WP_009544699.1\|2676376_2678434_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_010546.1\|WP_009544715.1\|2656782_2657523_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224565

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009544709.1\|2661990_2662962_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	3.30859e-67
NC_010546.1\|WP_009544700.1\|2674311_2676024_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NC_010546.1\|WP_009544704.1\|2665897_2668894_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_010546.1\|WP_009544712.1\|2658898_2659576_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.11215e-95
NC_010546.1\|WP_009544698.1\|2678771_2680565_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.09295e-168
NC_010546.1\|WP_009544702.1\|2670558_2670981_-\|DUF393-domain-containing-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.51405e-33
NC_010546.1\|WP_009544696.1\|2682079_2682667_+\|cell-division-protein-SepF	gnl\|CDD\|224712	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown].	6.24987e-38
NC_010546.1\|WP_009544697.1\|2680610_2681753_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	3.55458e-155
NC_010546.1\|WP_009544705.1\|2664535_2665771_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NC_010546.1\|WP_009544714.1\|2657564_2658494_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|379207	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.	7.56972e-12
NC_010546.1\|WP_009544711.1\|2659585_2660992_-\|DUF2079-domain-containing-protein	gnl\|CDD\|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.02514e-100
NC_010546.1\|WP_009544703.1\|2669364_2670558_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	4.76577e-95
NC_010546.1\|WP_009544710.1\|2661130_2661973_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|236017	PRK07428, PRK07428, carboxylating nicotinate-nucleotide diphosphorylase.	0
NC_010546.1\|WP_009544701.1\|2671235_2674193_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_010546.1\|WP_009544699.1\|2676376_2678434_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.69661e-59
NC_010546.1\|WP_009544715.1\|2656782_2657523_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	1.33866e-30

>NC_010546.1|WP_009544706.1|2663902_2664196_-|hypothetical-protein
MKISLIGFLAVSTLSLVPVSAVADQANVQTSGQVSTQIGDGNTSHQRTTQSNHNSRRGRGENIGSVQDSYQDSFQEGDNNNSSQIVNQRNRVRQGRR
>NC_010546.1|WP_009544707.1|2663440_2663800_-|hypothetical-protein
MKPKNLTFFIILCFLGWLTIANAKPSKVRSGNITITREDNGTIEIDTGKVRISSPRHPRESRIENNSLDNYDDFNSSMSEQNFQNSHCGTRSVQSSQQTNINGSRRTVTHTQISNHICP
>NC_010546.1|WP_009544708.1|2663051_2663423_-|hypothetical-protein
MKVNYLSIGFWSIAGLIFMPSIAPQSASAQCVQSHTGVQLHMGKSPAEQTQHTQFDNQGNCTGNASSTTATQVNIGGNNVRQHQEVRHETRGSRVNSSRVNGPTVSVDVVTPVNVQTPNNFPD
>NC_010546.1|WP_009544709.1|2661990_2662962_+|tRNA-lysidine(34)-synthetase-TilS
MWTSLHARVHQTLKDSLILPRKNNLLIAVSGGQDSLCLLKLMIDLQKKWGWNLAIGHCDHGWASDLGIADHVRELANDWQIPFYLKVAEAMEETEAAAREWRYHSLIEIAKEHQFTEVLTGHTLSDRAETLLYNLIRGAGSNGLGALTWKRPLTNKINLVRPLLKVSRSETLEFCKQFSLPIWEDAVNANLDYARNRIRQQLLPYLKENFNPNVEITLSQTSEVLKAESNYLEAEANKILQEAFNHNNYTLNREILKDLPLALQRRVVRQFLAEIMVTRPNFEQIEETVKLIDAPRRSRTSSFPGNLILEVEENCIIKKQIGS
>NC_010546.1|WP_009544710.1|2661130_2661973_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MIPPSLIIDPLLIAWLQEDLGRGDRTTDGLELQKMGSGQWVAKAEGIMAGLPIAQRVFQLLNPKIEFIPVVEEGQRVKTGQVVATFNGSLSALLTGERVALNLAMRLSGIATMTRQYTEIIADLPTQLVDTRKTTPGLRILEKYGIRVGGAKNHRMALDDGVMIKDNHIKAAGSIQEAIQRIRPTIPYPLTIEVETTTLEEVKEALMYGADIIMLDNMNLDLMKEAVSYIRGENKQIKIEASGNITLDNIRQVALTGVDYISSSAPITRSTWLDLSMRLD
>NC_010546.1|WP_009544711.1|2659585_2660992_-|DUF2079-domain-containing-protein
MKLSYLKSSSFLIILVISIIILFVCSSLKHILFQSTAWDLAIFDQAIYLISQGKIPISSFLKIHILGDHAALIFYPLSLFYKLYPSVYWLLLIQAFALSLGALPVYYLSQYHGLNKSKSLTMSLVYLLYPLIFNINLFDFHPDVIAVPSILWSILAAYSHNLGLFILAIIITLSCKSVLSLTIIFIGLWLFCFAKKQRLGSIAIGLGISWFIISTRFIIPIFSDNTSNISRHLERFNYLGNSFFEIAQNLIFKPWLFFQGLFNLPNLEYLLLLLIPVIWGLSSHYFTPLIPAIPTLAMNLLSQNALQKDLLHQYSLPIIPFLMVAVIMTVAAKKSWFQQNKYIITWSLICFLALAKYGYFTSRYLESLDTWKATNEAITQISTKGNVLTSTYIAPHLSQRPIIKLAENGAESFDVNEFDYILLNQRHLGRESSPELIETIKETVGQNANFNLTYNKDDIYLFSQKIKQ
>NC_010546.1|WP_009544712.1|2658898_2659576_-|5'/3'-nucleotidase-SurE
MTIILTNDDGIDAPGIRALSKALGGQGIIVAPKQPHSGCGHRVTTHQPIHLEKRSLNEYAIDGTPADCTRIAVKHINKETKWVLSGINAGGNLGVDVYISGTVAAVREAAMHGIPGIAISHWIKRPLIINWDLAVKWTEKVLNILWDKPLESGSFWNVNLPHLEPNSPEPEIVFCESSIHPLPVNYRVEGDLFYYHGEYAKRERSKGTDVDVCFSGNIAVTLIKL
>NC_010546.1|WP_009544713.1|2658614_2658839_+|hypothetical-protein
MWRVNVRCDQDAWKQSGGDFKTMTENYQVELIGSQKMPDGKRIMAYKMDDISDVETFIEDCVKFPGFTADFESL
>NC_010546.1|WP_009544714.1|2657564_2658494_+|SGNH/GDSL-hydrolase-family-protein
MKIILITLGIIILSLLIIESSLRLFFGLGKRPIYIADDEIGYLLAPNQKVHRLGKLTIINQYSMRSEDIEKSPSNDTMRLFFIGDSIVNGCWWTDQNETISALVKEEIEKKLSQTIEALNASANSWGPRNQLAYLERFGTFHSQVIFLIINTDDLFATRPTPLRVGIDMYYPDKQPILAIKEILDKVFYRDPKIPGMDKIVGERGDRVGFNLKAIEKMKAIATNNNSQFMMVLTPLKREMNPEPRDYEKVARKRLQDWVEVNNVPFIDFLPIFAEQENLDDLYRDHIHLSPLGNQLVSQKISELILNKN
>NC_010546.1|WP_009544715.1|2656782_2657523_+|thioredoxin-domain-containing-protein
MKKGLNSLMALLLIIGLTWIPIISVPSAQAIIEPELEKTVLDIIRQHPEVLIESVQAYQKQQQEQQKQFIQSFVSQLATHPQTIIADSPITGPLTQKNILIEFSDFQCPYCQQAYETVKTFMDSHDEVTLVYKHFPLSSIHPQAMAAAKASWAAGEQGKFWPYYDALFMQQEKLGEKLYLEIANNLNLDINQFQRNRNSKRANLAIEKDMELARQIGIQGTPLFVFNGQFFSGAVPLSTLETALSP
>NC_010546.1|WP_009544705.1|2664535_2665771_+|LL-diaminopimelate-aminotransferase
MATINDNYLKLKAGYLFPEIARRVNTFIEANPEAKIIKLGIGDVTEPLPEACRTAMIKAVEDMGDRSSFKGYGPEQGYGWLREKIAAQDFQARGCDIDASEIFVSDGAKCDTGNILDIFGKNNKIAVTDPVYPVYVDTNVMAGHTGETNEKGEYEGLVYLPISADNHFVADIPSEKVDLIYLCFPNNPTGATATKEYLKAWVDYATANDSIIFFDAAYEAFITDESLPHSIYEIEGAKDCAIEFRSFSKNAGFTGTRCAFTVVPKQLTAKASDGSQVELWKLWNRRQSTKFNGVSYIVQRGAEAVYSEAGKAQIKGLVSFYLENAKIICEQLKSAGFEVYGGVNAPYIWLKTPHNLSSWDFFDKLLQTTHVVGTPGSGFGAAGEGYFRISAFNSRENVEEAMKRITQAFKV
>NC_010546.1|WP_009544704.1|2665897_2668894_-|cation-transporting-P-type-ATPase
MNNLHLINPNPHQTLSFVKILHETVKGRCRCKVNGLLYSDQLKQYLEFNLSIHKDILSVKANSTTSNILLYFNPHKKVSEIVVIINQYVQEYYQYPQKSREYLPQKPTASLTSSTSWHLEDIETIISQLKTSKDRGLSSLAVQQKLKEDGINALSEIEPRSGLSIFIDYFKSVPVALLSSAALLSILTGGMADAVVIMGVVTINAILGYVTESHSEKIINSLKNFVNPSAWVVRDGTLIEIDTTEIVQGDVLSLQPGCYIPADARLIEAHRLTLDESALTGESLPIEKHQERIISNQTTVPLGERNNMVYRGTFVTGGQGLGVVVSTGNLTEMGKIQALMGETNQPATPMERQLEQAGTQLVWLSSAVCGVVFTVGLLRGYGLLEMVKTSISLAVAAVPEGLPTVATTTLALGILKMRQQKVLIRRLEAIEALGSIQAICLDKTGTLTSNRMSVLKLCWDGREIDLRDGRLWSGNQVINPYGCDELLKLIHLCVLCNDSQISYHSDQTYILDGSSTENALMEMAIAAGVDIRELHGKYPRFVTHHRSEARNLMATVHQIQTSTYLIAVKGNPKEVLERCSTKMENSQLIPLTEREKQAITDQNETMARQGLRVLGVAYGQAETSDPHSLTLSHLIWVGLIGMADPIRPGVKETINNFHQAGITTLMITGDQSPTAYAIAQALHLSQEKPLKILDSRELSDVSPEVLRSLCQEVHVFARISPAHKLQIVQALQQRGLVVAMTGDGINDTPALKAAEVGIAMGHTGTDVAREVADVVLEDDDLETMIVAVSQGRTIYNNIRKSVHFLLSTNLSEIMVMLLANVGGFGQPLNAMQLLWLNLVTDIFPGLALALEAPEPDVLTLPPRSPDEPIIKSSDFQRILVESSTLSASALSAYGYGIWRYGISPHASTVAFMSLVSGQLLHALSCRSPKPLYAHPLPHNPYLTAALGGSLGLQWVSLAIPGLRNLLHITPLNLGDSGVIASSAILPLLISEATKSHEN
>NC_010546.1|WP_009544703.1|2669364_2670558_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MIYPQAFLSEVQQQRKEFPGLTNKVYFNFGGQGTLPRSGLEAIIDAHNLLQQQGPFSLKVNDWIRQKTELLREEIAQELGVEPPTITLTENVTSGCNIALWGLDWQEGDRILMTDCEHPGVIATVEEISKRFGVEIDICPILNTLNEGDPVEVIKERLTPQTKLVVLSHLLWNTGQVLPLKEISHLCHNYAESDRPILVLADAAQSAGSLALKLGETEVDFYAFTGHKWFCGPAGVGGLYIRPEIFELINPTFIGWRGINIDEKGQPIDFKKDGRKFEIATSAYPQYEGLRAAIAVHNSWANSEERYQQICQLSEYLWQGLSEISAVNCLKQSPPEAGLVSFKVDGNTNHKEMVQKLESQGFLLRTIRDPDCIRACVHYFTLPDEIEQLIKAINSMI
>NC_010546.1|WP_009544702.1|2670558_2670981_-|DUF393-domain-containing-protein
MVYHIIYDGNCNLCSTFTQLLAKFDQGNIFDYIPMQDNLTLQQFNITPEDCEMGMILIDGNNNTNRWQGSDAAEEIVNLLPLGQAFVTAYRSLPGMKWLGDKSYEQVRDNRYNWFGKREETYQSPYPFGCDKTDNCSVSN
>NC_010546.1|WP_009544701.1|2671235_2674193_+|aminomethyl-transferring-glycine-dehydrogenase
MPNLDITANHTQTNDNKTSNLDNILAPTDSFINRHIGPNRQEIDKMLKMLGFSTLEQLIDATVPQGIRLSKSLNLPEAQSEYGALAQLKSIASKNQIFRSYIGMGYHDCITPPVIQRNILENPGWYTAYTPYQAEIAQGRLEALLNYQTMIVELTGLEIANASLLDEGTAAAEAMSMSYGLCKNKKANAFFVDSHCHPQTIEVIRTRAYPLGIDLIIADHRFFDFDTEIFGALLQYPATDGTLYDYRTFIETAHNQGALVTVAADPLSLALLTPPGEFGADIAVGSTQRFGVPLGYGGPHAAYFATKEAYKRQIPGRIVGVSKDAQGNPALRLALQTREQHIRREKATSNICTAQVLLAVIAGMYGVYHGPEGIKNIAQKIHQLTVILAKGLQTLSYTINDEPFFDTVKVGVGDASVKAVIKAAAERKINLRLYGEGVLCISLDETTTVHDVVELWQIFAAKDELPFTIEDIAKQVNFDFPIFFKRTSDYLTDPVFNQYHSESELLRYLHQLESKDLALNTSMIPLGSCTMKLNAAAEMMPVTWPEFGKLHPFAPLSQTEGYQILFQQLEKWLGEITGFDGISLQPNAGSQGEYAGLQVIRQYHDSRGEINRNICLIPESAHGTNPASAVMCGMKVVAVKCDKQGNIDIADLEKKAEKHANNLGALMVTYPSTHGVFEEEIINICDIVHRHGGQVYMDGANMNAQVGICRPADFGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLVPFLPTTNVEKYTDPDSNGKAETSIGAISAAPWGSASILVISWMYIAMMGEKGLTEATKVAILNANYMASRLGDYYPILFKGSSGCVAHECIIDLRPLKKQAGVEVDDIAKRLMDFGFHAPTVSWPVIGTMMVEPTESEDLAELDRFCDAMITIHQEAEAIANGTIDPENNPLKNAPHTAQAVICGDWERPYSREKAAYPAPWTKEHKFWPTVGRIDNAYGDRNLVCSCEGMEAYQDS
>NC_010546.1|WP_009544700.1|2674311_2676024_-|glycerol-3-phosphate-dehydrogenase
MRDFQSIQQTTYDLIVIGGGVNGAGVARDAALRGLKTILIEKGDFAGGTSSWSTRLIHGGLRYLEYFEVPLVRESLREREILLHTAPHLVRPLLLTIPIYKNRSRPYWKIWAGMFLYDILSADKTVPSHRMLSEAKFKQLFPSMDPDGLVGGAQYYDGQVTYAERLCLENIISADEAGATVLNYVKVTKLHREGDKITHVTCKDVLTGKEFTVKGKDQSMVINTSGPWVDNVCQLGVKNGGNAPIGKTQKIGGTKGSHIVVDPFAGAPDTSLYVEAKSDGRPFFIVPWLGMYLIGTTDYRFEGTPDQLKADNDEIDYLLQETNNIIPNARLSRDDVKFTYSGVRPLPNAEGKKAGSITRRHILFDHSKEGVKNLISLIGGKLTTYRQVGEEIVEEVYKKIGKSAPPCPTEDQPLPGAILPNDSLIQQTVLNYEDKVPRQSINHLFKVYGARAVKVLELVDSEPKLGELITPELPDIKAQVVYAVRHEYAHTLVDIARRRTAIAMEAHYGLEVLPTLIDTLKTYAGWDDYKSATAKENYLSYMKNNCIPDFDEVDTEVEPRNWDKEEVPLF
>NC_010546.1|WP_009544699.1|2676376_2678434_+|sensor-domain-containing-diguanylate-cyclase
MTTEHRCPLCDSPLWPHVSDGHPTWFCRHCEQEVPYSVDQTSANRVVAPQTTSISQLLTPPVPHTFTLREIWQTTVKGIAQFLEADRVLIAQMMPSGEMVVVEEWRQRPWKTLLHCHISQFVTFADIKTWQEGTIEAIADLSHGHHQTSTMMTLDSLFDVKAKIIVPIRQRDSQTGKNLWGLIIVHQCSGPRQWTASELGWLSLISTQLIMSIQQDQFYQHLSQINQKLEEIAFYDRITQIPNRHYFEHYFAQEWRRMAREKQPLSLIVCDVDFFKAYNDTFGHPQGDRCLQEVAYTLKYTLHRPGDMVARYGGEEFVAILPNTNASGAVHVAQQMQSAIKQLKVPSATQTVSEFVTISLGVASVIPSQEKSPKQLLNEADKALYEAKQKGRDQVFFQGQKEINFKPKSKPIQQTLSAIPLLENLSSRELLKSYVAYFLSRGVSVSSPTEGILPFNGLVYQYQGYHQNFVNWWQQLEQRKDYSQLYLTGDSHNFDDFLDGGCRVQECARCNLPIVTPTGHIYSLPGCTLCLKDDQYCQRQHTEDGIKSETIFRLLTITDIEQNFKTLQQWLNRNGVEAVFISDLTEINDYLLSEPFAAIMIDNHANKEIIENWVKQLHRYPSLKEVPIIALSKNAENGIPWLNRELQLEDYLLTPFNGDTLVDYLRHLSTTNLALNQSGIYWFPR
>NC_010546.1|WP_009544698.1|2678771_2680565_+|signal-peptide-peptidase-SppA
MMNFVKQTLASLIGTLAGLFLFTTAGVSSVVILLITLASVDSEPTIKDQSVLVFDLSTEIKDREPLVNIGDILSGKESSVLTLSQVIKNIEKASKDDRIKAIFLDGSNASSGSGYANFSEIRQALIEFKESGKKIIAYDVTISEQEYYLTSLADTLIVNPMGLMEFNGIGTEPLFLTGALNKYGIGVQVVRVGEYKSGVEPYTRTQLSPENRQQLEVLLGNIWNNFLQDVGKTRQIKVNNLQSIADTQGLLYPQEAKELNLVDQVDYRDKAISILKEITDNKEESLRQISFNNYVNIPVTGITESSSNNKIAVVYLEGAIVDGVGNREQVGATRFARILRKIRDNEQVKAVVIRINSPGGSATASDIILREIQLIQETKPVIISMGNVAASGGYWIATGGEHIFAQPNTITGSIGVFGVLFNIQEIANNNGITWDVVKTGKFADLGTATRPKTEQELAIYQKSVNRVYDLFLEKVAKSRDLSKEKVVNIAQGRVWSGETAKKIGLVDSFGGLGAAIDYAVEKTELGKDWQVEEYPTSQGFAELFIKKTLDEDIKITTNTVDPLTEEFLKFKEELKVIQNFNDPRGVYSLLPFNWQLR
>NC_010546.1|WP_009544697.1|2680610_2681753_+|DNA-replication/repair-protein-RecF
MYLKHIHLYGFRNYHEQTLDLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLILEGKKTGQILAMVERTYGESELGITFRSPGRRSLMLNHENLRRHLDFLGHINAVEFSCLDLDLVRGSPETRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRKTVEEQENSSNLSAELSQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTEILAINYLPNIKIENEDPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFNINHTPAKSYGSQGQQRTLVLAIKLAELQLIEEVIGEPPLLLLDDVLAELDPNRQNQLLEVIQGRFQTLITTTYLHSFDAQWLNSSQIMKVEGGKIAQL
>NC_010546.1|WP_009544696.1|2682079_2682667_+|cell-division-protein-SepF
MILDKLKRWAITEPIEDDVEYDDPNYVEIDGNSDFEMEEPETTSVPQPEPEPRPWAKPMGSNMNAELNMRNNKGNVVPMPGINNIAEVVVVEPHSFDEMPQVIQTLRERKSVVLNLNVMEPEEAQRAVDFVAGGTYAIDGHQERIGESIFLFTPNCVKVSNLSGTVHDVPEIPVNPSRNPSPVANWGAEVNRLVQ

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Crispr_ID: NC_010546_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_8

2806393-2806478

Orphan

Consensus_repeat	Method
CTAATGTCTTTTCTATTATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_8

>merge|NC_010546|8|2806393-2806478|CRISPRCasFinder
CTAATGTCTTTTCTATTATTAATAAAATTGCGAAACCTGGTAGGGTGGGCATTGCCCACCTTACTAATGTCTTTTCTATTATTATT

>NC_010546|8|8|2806393-2806478|CRISPRCasFinder
CTAATGTCTTTTCTATTATTAAT	AAAATTGCGAAACCTGGTAGGGTGGGCATTGCCCACCTTA
CTAATGTCTTTTCTATTATTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009544558.1\|2814804_2815524_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_010546.1\|WP_009544565.1\|2806557_2807859_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_010546.1\|WP_009544564.1\|2808057_2808564_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544568.1\|2803609_2804263_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544557.1\|2815520_2816087_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_010546.1\|WP_009544576.1\|2797429_2799409_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_010546.1\|WP_009544573.1\|2800526_2801069_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544562.1\|2810244_2810598_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_010546.1\|WP_009544570.1\|2802380_2802920_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NC_010546.1\|WP_156922863.1\|2799458_2800112_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544567.1\|2804860_2805394_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_010546.1\|WP_009544563.1\|2808674_2810180_+\|cryptochrome/photolyase-family-protein	unknown	unknown	gnl\|CDD\|225588
NC_010546.1\|WP_009544560.1\|2811271_2812993_+\|NAD-binding-protein	unknown	unknown	gnl\|CDD\|367001
NC_010546.1\|WP_009544561.1\|2810652_2810988_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544569.1\|2803171_2803417_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|223399
NC_010546.1\|WP_009544571.1\|2801484_2802297_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010546.1\|WP_009544556.1\|2816104_2817454_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_010546.1\|WP_009544574.1\|2800163_2800448_+\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NC_010546.1\|WP_009544559.1\|2813094_2814783_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_010546.1\|WP_009544572.1\|2801191_2801407_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009544565.1\|2806557_2807859_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	8.03606e-167
NC_010546.1\|WP_009544560.1\|2811271_2812993_+\|NAD-binding-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	6.38382e-22
NC_010546.1\|WP_009544557.1\|2815520_2816087_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	7.35553e-56
NC_010546.1\|WP_009544576.1\|2797429_2799409_+\|cation:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	8.54362e-77
NC_010546.1\|WP_009544559.1\|2813094_2814783_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_010546.1\|WP_009544570.1\|2802380_2802920_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.32293e-09
NC_010546.1\|WP_009544562.1\|2810244_2810598_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.17576e-21
NC_010546.1\|WP_009544567.1\|2804860_2805394_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.08914e-15
NC_010546.1\|WP_009544563.1\|2808674_2810180_+\|cryptochrome/photolyase-family-protein	gnl\|CDD\|225588	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].	0
NC_010546.1\|WP_009544558.1\|2814804_2815524_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	9.62294e-23
NC_010546.1\|WP_009544556.1\|2816104_2817454_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_010546.1\|WP_009544569.1\|2803171_2803417_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|223399	COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].	5.00542e-07
NC_010546.1\|WP_009544571.1\|2801484_2802297_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.3599e-24
NC_010546.1\|WP_009544574.1\|2800163_2800448_+\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	8.09521e-42

>NC_010546.1|WP_009544567.1|2804860_2805394_+|DoxX-family-protein
MNTSILSLVFKPNVKPSIASQTAWAIFRVVVGLMMIHNGLDKLGNIESFAEAYVSYIGLPFPIFFSYVAAFTELIGAPLVAIGLFTRPAALGLFSTMLVAMYHHILVAGFSIPYLELSAIYAACFLFFLVNGAGLFSTDALILNWLDSQAFNEKAKQLMLLEKSYQVSPNKKEKQMR
>NC_010546.1|WP_009544568.1|2803609_2804263_+|hypothetical-protein
MCLINPNDYDILQNSATKKHGGLVRNAWSGLYQHSNRIIVWIDTPIYTMSGYQFEFYSGLEVINYLEKHSDQRNYYLQRGSILDVDVLMIKDLKILTLSNLPIEEKLKEKLPLLENTMNTNNQQQSNNQSQELMTPSLPKKMTRWLVHIEEVEVEICKDENKKYYVRHNLFWYMINERKNPDPIHNNIRNNLQRWVNNELSTIWWSGYSFKFEELEF
>NC_010546.1|WP_009544569.1|2803171_2803417_+|GIY-YIG-nuclease-family-protein
MEWKKWEHTSFKLKDCLPSYSGIYIVADKDDHIWYVGQAKDIQSRWQGQSHHRYSQLKRSNKKYNYTIYYHPFPIEQLDEK
>NC_010546.1|WP_009544570.1|2802380_2802920_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MLFFKILASIYLLKVPISHQKEKKSDQGFTLLELLISGIIVGILSAIATPAYIATIDKFHYGEAKLQMGCIKRELEAFRFEKGYFPEDVNRDTVPAGIDCFVKSNTTLTPYNSTYDYENWSTNGGCVVKIAFLGKDREKQSANTRNLHQQSGFYDDRERDRNSDDLILSLGWQPPEVCG
>NC_010546.1|WP_009544571.1|2801484_2802297_-|tetratricopeptide-repeat-protein
MIRCILSVLIILVLWAGVTPIGLAQTQENPTIIEEKVQQGEAIAQKAIEATENGDFGQAEAYWTELVEAFPSNPAVWSNRGNARVSQNKLEAAIADFNEAIKLAPDAPDPYLNRGTALEGQGNYEAAIADYNRVLELNPNDAMAYNNRGNAESGQGDWDKALTDYQKAVEIAPNFAFARANAALVYYQIGNQGEAITEMRNLVRKYPMFPDMRAALTAVLWNMGQQGEAESHWVAAVGMDNRYQDLNWVKNIRRWPPQMVAALDKFLNLK
>NC_010546.1|WP_009544572.1|2801191_2801407_+|hypothetical-protein
MFLQHKPSGDVIEVLNVDHLYDPCETKIVGRYHCGEEMQDPEPFMKSELTFPSGESLPRCWVEPNYRLEAA
>NC_010546.1|WP_009544573.1|2800526_2801069_-|hypothetical-protein
MSLDRSTFRISPLIRITLISLYIALTVPLPFLAKVTNASVPSWVLWIGIVLGLFVLIGALSERVIVNETQIKVVYPVWFSSFFRKGWSLNWSDIKDLKLRTTGQGGLVYYFISENSEQAYLLPMRIAGFSYLVNVVTEKTGIDTTDIRPLSQPWMYLILLVCTLFLLLMDTWIIWTAINI
>NC_010546.1|WP_009544574.1|2800163_2800448_+|DUF427-domain-containing-protein
MAIAIWNGVILAESNQCEMVEGNYYFPPDSINKQYFKESDTHTTCFWKGQASYYTIEVNGQENKDAAWYYPTPKEKAQNIKDYVAFWKGVQIEK
>NC_010546.1|WP_156922863.1|2799458_2800112_-|hypothetical-protein
MTRVKNRILNLLKKIPSIFIICNSVSLLLLILVIIYAQKFEPSVEGLFIPPVTPPYPTAGLLTHTFEILCSIPPVLCGFSFVILRRINPNNTNNFFLLGSTILTAGFFVNEIYRIHIILQFFDIPKSTTIKVYGVIALLYLLLFWKNLRSTPYGIIIISLLLIILAVLIDSFYQYFPLKSLLIEGIPKLLGVINFSLYFSLVCYQEIIQTFISSQTD
>NC_010546.1|WP_009544576.1|2797429_2799409_+|cation:proton-antiporter
MEASFELTLQIVMAVLAGISAQVIAEFFKVPSIVFLLLFGIILGADGLNFLHPHDLGVGLEVLVALSVAIILFEGGLNLELRDLGRVSGSLRNLVTFGTLITLVGGGMAAHWLAEFPWSIAFLYAALVVVTGPTVISPLLKQVEVDRKVATLLESEGVLIDPVGAILAVVVLDTILNSSATPVEIFSGLLLRFAIGAIIGGISGVLLGFILKNTPFLSEDLRNLVVLAGVWGLFGLAQLSRSESGLMATVVAGIVLRASSIPDERLLRRFKGQLTVLCVSVLFILLAADLSIDSIFALGWGSILTVLALMWVVRPISVAFCTINSDLNWRQKFFLGWIAPRGIVSASVASLFAILLTQKGINGGDSIKALVFLTIMMTVFIQGLSARWVAKGLKITAVEATGAVIVGCNALGRLMGRLFEQRGESVVLIDTDPEACQQAEAEGLSVFQSSALDPDVLEEAGIESMGTFMALTSNGQVNLVLAQRATEEFKPPRVFAIFPSNAPQDNSANKSNKSNNTKISPAFVDQQLIKMWNQYLTEGQFKLGITDFREPGLSFKQAHFQALIREGEVLPLLIKRKGSLQVVQATQNWQEGDEVTYLFHDPRPKLLKRLSGGSQISKELTAERLPEVEEVPLAEPVENSLSEPPIDTLDNPRKSEAKS
>NC_010546.1|WP_009544565.1|2806557_2807859_-|2-oxo-acid-dehydrogenase-subunit-E2
MIHDIFMPALSSTMTEGKIVSWVKSPGDKVSKGETVVVVESDKADMDVESFYDGYLATILVEAGQEAPVGDAIALIAETEEEIAQAKAKGSSGLSTPPPESPPKKEEKQPSQAPATTATATATAPSSTNGKSNRIVASPRAKKLAKQLGISLNSVEGSGPYGRIVAEDIEKAAGKTPTPPSIPTQTTQPPKPTQTPTVAPATPTPAPVTAGETVPLNTLQKAVVQNMVATLQVPTFHVGYTITTDELDKLYKKLKPKGVTMTALLAKAVAVTLEKHPLVNANYSEQGIRYPQSINIAIAVAMPDGGLITPVLQNADKVDIYSLSRTWKDLVDRARAKQLQPEEYNSGTFTLSNLGMFGVDRFDAILPPGQGSILAIGASSPQVVATPDGLLGVKRQMAVNITCDHRIIYGSHAAAFLQEFANLLETDVQSLTM
>NC_010546.1|WP_009544564.1|2808057_2808564_+|hypothetical-protein
MINLRQAVFYEYVDDGVVEIFDRYKWGLRRLGVNFSQDLLETIVYCPHNLENTFMAFCSWVLWLKSKGEKTNPEILSETLMQALKSDRGWIPYDYQKDFLAQHLDILESPQLSLWKAAGQQLGERLRNRIISDISEEGKINFHPNSILTDEEKEKIEAFKVYIDQLYL
>NC_010546.1|WP_009544563.1|2808674_2810180_+|cryptochrome/photolyase-family-protein
MNIGIWILGNQLHLEQAALLSCKNNKQETPVIFIESHNYIQKRPYHQQKLVLVFSAMRHFAEELSSQGWQVSYKVAHDFESALNNWIKENKITELRVVSPCDRPFLRRIQSFKLDCKTKFISNNHFLWSNEEFKQWNDSRKRLLLEDFYREGRKRFNILMDEDQPIGDKWNFDKQNRKPPKQNLNPPTPLWFEPDAITEQVIKDIKSYKIASYGKIEPFKWGVTRSQALQVLDHFLENNLNNFGAYQDAMITGEYTMWHSLISPYINLGLLTPLEVIQKIEKAYHEFDYPLNSVEGLIRQILGWREYMYGIYQLMDDDYRDKNWFDHQENLPAFYWDSSQTDMNCLKQILQQVEETGYAHHIQRLMVLSNFALIIGVSPQAINDWFHSAFIDGYDWVMVPNVIGMGQFADGGILASKPYAASANYINKMSDYCKSCEYKQTKRTGEKACPFNFFYWDFLSRHQEKLKSLGRMNLVLANLKKIDSEELQEIQSQSQQWKEDH
>NC_010546.1|WP_009544562.1|2810244_2810598_+|Uma2-family-endonuclease
MITQLASSDNYPIIIQISPIFDMTDEQFFELCQLNRDYRFEKTAKGELMIMSPTGSETGNRNFNLLVQLGNWIEKGGTGIGFDSSTGFILPNGATRSPDAAWIKGEKGFILDLTKIW
>NC_010546.1|WP_009544561.1|2810652_2810988_-|hypothetical-protein
MMFNPFKAKNIAVMLTLLGVTLGLAPVTVAQSIDQVDKKPYQSNEKNPNGDMGDFMNPLNLMHRANLERSRSGGEFAEDTRNNLSEAAKSFKEAQRQMLEAQEAANQNQEP
>NC_010546.1|WP_009544560.1|2811271_2812993_+|NAD-binding-protein
MKPQIIVCGLGRTGYKIFRLLKRQGAAVVGISDRLILGETSDNVIVGELSSPSTLAKAGIHHAHTLVLASNNDAVNLGTLTQARILNPKIRIINRLFNHTLGERLDQTLPRHHTMSVAALAAPIFSFAALGNKAIGQLQLFNQIWPIEDVVIDENHPWLGLNLGELWECPSRMLIYYLPAQGELDLVSAVLQKKSLQLGDHLIIGTRLSSRSKHRFWGQKIVKAIANLRRYQRYVNPVIAVTLCLLGMIFAATFTYVAVNYNTSLVDALYFSVGMITGAGGQEQVAEKAPASIKVFTAIMMIVGAGVIGVCYALLNDFILGTRFKQFWDVARVPTKHHYIVCGLGGIGIQIVRQLQEQGYEVVVIESDQNNRFLHTARSLRVPIILEDARVNDTLKTANIQKAEGIIVVTSNDMINVEIGLTAKAIAPQINIILRSQDPQFGQSVQEVFEFETVLCPSELATPSFAAAALGGKILGNGMTEDLLWVALATLITAKHSFCGQTVKDAAMKGGFVPLYLERNPLTIHSWELLDTHLQPGDVLYLTMPANELEQLWRIPSVELHVKSSEFGVRSSR
>NC_010546.1|WP_009544559.1|2813094_2814783_-|NAD+-synthase
MKIAIAQLNPIIGDIENNAQHIYKVAQIAVERKAELLLTPELSLCGYPPKDLLFNTGFVEKLQIELEKLAKQLPKKLAVLVGTVTENPHAYREGEKPLFNSIVLIENQAIKQIFHKRLLPTYDVFDEDRYFEPGKESNFFQLSSHDSNSKPIKIGVTVCEDLWNDEEFWGKRNYETNPIQDLVNNGVDLVVNLSASPYSIGKQKVRESMLKYTAQRHQVPIIYTNQVGGNDDLIFDGNSFAVNKNGEITLRAKGFQTAIETIECDDNNHDFKISYIADSIETEEAEIWSALVLGLKDYAHKCGFSKAVLGLSGGIDSSLVAAIAAEALGKENVLGILMPSPYSSSHSISDAEALVNNLGIKRYTLPIKDVMKAYDSILEPLFKGTEFGVAEENLQSRIRGNLLMAIANKFGHLLLSTGNKSEMAVGYCTLYGDMNGGLAVISDVPKTRVFHLCKWLNRHQEIIPRNVLIKPPSAELKPDQVDQDSLPSYDILDGILDRLIHRHQSIKEIEAAGFDYDIICKVVKLVTRAEFKRKQAPPGLKVSDRAFGTGWRMPIASRWKLD
>NC_010546.1|WP_009544558.1|2814804_2815524_-|NUDIX-hydrolase
MNSHNNQLILEDFKVGVDNVIFSIDSQKNRLLVLLVKRSEEPYIDQWGLPGTLVRQGESLEAAAYRILSEKIETNNLYLEQLYTFGGPNRDPRESPDSYGVRYLSVSYFALVRFEEAKLITNYHQTAWYMIEKVPQLAFDHNVILDYGYQRLKSKLEYSPVAFDVLPEMFTLNDLYQFYTTVLGENFADYSNFRTRLLKLGFLIDTEKKVSRGAGRPATLYRFDSEAFAPFKDKPFVFI
>NC_010546.1|WP_009544557.1|2815520_2816087_-|nicotinate-nucleotide-adenylyltransferase
MTKIALFGTSADPPTAGHQSIIHWLSTHFDWVGIWASDNPYKDHQTSLDHRIAMLQLLIDNIDPPPHNIYLSKKLSHRRSLISVAKAKEIWGENAEYFLVIGSDLVKQIRQWYRIDKLLAEVSILIIPRPGYTINQSDLNALEEIGGNYEIADLNAPEVSSTAYRKYGNENVLIQPVQDYIHQEKLYA
>NC_010546.1|WP_009544556.1|2816104_2817454_-|nicotinate-phosphoribosyltransferase
MLTLNTSLTPSPQDSSLLTDLYQLTMAACYAGEGIAEKRASFELFVRSLPDNFGYLIAMGLTQGLNYLENLRFTPEQIDYLKNTGIFDHVSSNFWSLLENQDFTGDVWAVPEGTAIFANEPLLRVEAPLWQAQIVETYLLNIINYQTLIATRAARMRDMAGENPVLLEFGTRRAFSPQGAMWAARAALAAGFDATSNVLAAKELNQQPRGTMAHALVMAFTALSGNEDDAFTAFNRYFPGATLLIDTYDTVAAAERLAQKMEAGEAEVKGVRLDSGDLGALSKKVRSLLPHVKIVASGDIDEWELQRLRKENASIDGYGVGTRLVTGKPVNGVYKLVEIDDIPTMKESSHKMTYPGRKQVFRRYDHGIIKSDRLALADEAIESGETPLLELMMKEGKTIKENESLETIAQRVQSSVKSLPSETHNITKPTPIKVNISEPLEKLRQSLIH

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Crispr_ID: NC_010546_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_9

3245003-3245140

Orphan

Consensus_repeat	Method
ATCATACTCAAGATGTTATGGGTTGGGTTTCCTTCCTCTACCCAACCTACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_9

>merge|NC_010546|9|3245003-3245140|CRISPRCasFinder
ATCATACTCAAGATGTTATGGGTTGGGTTTCCTTCCTCTACCCAACCTACTGTCTGGTTGTTTGGCCCGACGATATTACATAAATTGATCATACTCAAAATGTTATGGGTTGGGTTTCCTTCCTCTACCCAACCTACT

>NC_010546|9|9|3245003-3245140|CRISPRCasFinder
ATCATACTCAAGATGTTATGGGTTGGGTTTCCTTCCTCTACCCAACCTACT	GTCTGGTTGTTTGGCCCGACGATATTACATAAATTG
ATCATACTCAAAATGTTATGGGTTGGGTTTCCTTCCTCTACCCAACCTACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009547445.1\|3236730_3237552_+\|sulfotransferase-domain-containing-protein	unknown	unknown	unknown
NC_010546.1\|WP_156922849.1\|3243783_3244392_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009547462.1\|3251890_3252646_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_010546.1\|WP_009547453.1\|3244453_3244996_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_010546.1\|WP_009547455.1\|3245400_3245685_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|225583
NC_010546.1\|WP_009547463.1\|3252851_3253268_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_012362078.1\|3249013_3249961_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270238
NC_010546.1\|WP_035857510.1\|3250673_3251852_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|133005
NC_010546.1\|WP_009547451.1\|3243311_3243689_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009547447.1\|3240327_3240552_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009547450.1\|3242459_3242792_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009547460.1\|3249985_3250582_+\|DUF3011-domain-containing-protein	unknown	unknown	gnl\|CDD\|371422
NC_010546.1\|WP_009547454.1\|3245189_3245408_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009547457.1\|3247325_3248048_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|223644
NC_010546.1\|WP_083765713.1\|3240470_3240725_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370166
NC_010546.1\|WP_009547458.1\|3248050_3248794_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_010546.1\|WP_009547446.1\|3237680_3240164_+\|dynamin-like-GTPase-family-protein	unknown	unknown	gnl\|CDD\|223771
NC_010546.1\|WP_009547448.1\|3240996_3241569_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|223750
NC_010546.1\|WP_009547449.1\|3241751_3242165_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_010546.1\|WP_009547456.1\|3245959_3247198_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009547462.1\|3251890_3252646_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.76174e-21
NC_010546.1\|WP_009547453.1\|3244453_3244996_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.54111e-33
NC_010546.1\|WP_009547455.1\|3245400_3245685_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	2.34471e-19
NC_010546.1\|WP_012362078.1\|3249013_3249961_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.75738e-37
NC_010546.1\|WP_035857510.1\|3250673_3251852_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	5.35069e-46
NC_010546.1\|WP_009547460.1\|3249985_3250582_+\|DUF3011-domain-containing-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	3.37221e-28
NC_010546.1\|WP_009547457.1\|3247325_3248048_+\|ribonuclease-III	gnl\|CDD\|223644	COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].	4.72071e-66
NC_010546.1\|WP_083765713.1\|3240470_3240725_+\|hypothetical-protein	gnl\|CDD\|370166	pfam08872, KGK, KGK domain. This presumed domain is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.	5.79102e-27
NC_010546.1\|WP_009547458.1\|3248050_3248794_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	6.45792e-72
NC_010546.1\|WP_009547446.1\|3237680_3240164_+\|dynamin-like-GTPase-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	7.53706e-34
NC_010546.1\|WP_009547448.1\|3240996_3241569_-\|peroxiredoxin	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.78355e-92
NC_010546.1\|WP_009547449.1\|3241751_3242165_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.77973e-36
NC_010546.1\|WP_009547456.1\|3245959_3247198_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0

>NC_010546.1|WP_009547453.1|3244453_3244996_-|transposase
MQYRRAKQPGSSYFFTLVTHNRRSFLCEAENIALLRDSFRSVMEKHPFVIDAIVILPNHLHCIWTLPQGDAEFSTRWRLIKSWFSRRCDRKYQSNVSTSRQSKQERAIWQRRFWEHLIRDEQDFMNHADYIHYNPVRHGLVSCPKDWEYSSFYRYVQRGVYDVNWGSSQIPIFDVNVGME
>NC_010546.1|WP_156922849.1|3243783_3244392_-|hypothetical-protein
MSLIIRLLGYKIYDGILDKITDINEQLKQIGLSTYNFCPDRLPDDIVLPWLNISFSDINLLKNVFLELEANPDWTPESDSLFIGERIFFLSLAKEIFTEKQSHLLWHHNYFGCYVPIDFKDVLLPDDFLTSMGSSIQLKDELTELADKLKLDLGNYTPDFELLYEQRIYELENDPLGFEKMLLLCLYNFCLASIKYNLIIEF
>NC_010546.1|WP_009547451.1|3243311_3243689_+|hypothetical-protein
MLKLTYTHNGFYIDYLQESLEAWVTTRVILALRSGTSLCVEPSSASFLISLDLPYVNQLLEDVNEFTGEIVEVNRCDEEAMEVVLEGTWLGSDIASEEGIFVCRLSDRLESLLYQIWQESPVKIN
>NC_010546.1|WP_009547450.1|3242459_3242792_-|hypothetical-protein
MKTLPRTSTTEMEVTSIRLEKTLKDKLKELSGHQGYQALIRDILWNYVQQKSGDYRPQFSGVDIRATIEAVARKDESCVLTGKLIQGGEPMLLGLTIYGDFVPLSLDSNR
>NC_010546.1|WP_009547449.1|3241751_3242165_+|transcriptional-repressor
MKQEANTIVNILKKKKLRVTPQRFAVYANLLHRTDHPTAEQILNDLNKDAPTSSQATVYSALQALRQVGLVREVLLEPGICRYDANIEAHHHFRCRCCGVIEDLPWETFESININGLRQGIKAERYEVIVEGICDRC
>NC_010546.1|WP_009547448.1|3240996_3241569_-|peroxiredoxin
MGAIETVPSVVFKTRVRDESVPGPNPYRWQDLTSEEIFKGKKVIVFSLPGAFTPTCSSNHLPRYEELYDEFKALGVDEVICISVNDAFTMFQWGKQQEAKNVFLLPDGNGEFTRKMGMLVDKSNLGFGMRSWRYSMLVNDCKIEKMFVEPGYEDNCPTDPFEVSDADTMLAYLKGTESSGVSEPVKAFVG
>NC_010546.1|WP_083765713.1|3240470_3240725_+|hypothetical-protein
MSRFSWKSRYEIFTNFSSSKGSTKQYLTNNKWLTEGKECEILQVGSNSWKKGKIRLKVSLEFIPDEPKIKEIESPLDDIRQSIN
>NC_010546.1|WP_009547447.1|3240327_3240552_+|hypothetical-protein
MSQDRICGHNECLKNGDDVIAFSADSICKLAILKQKIETFLSSEVSNQLVDFLGKAGMKYLQIFLVLKVLLSSI
>NC_010546.1|WP_009547446.1|3237680_3240164_+|dynamin-like-GTPase-family-protein
MSQIIPQCEHLPTHVNSLLELLRQEPTLRSQQDISAIETSLSKAVSPQFEIVFAGAFSAGKSMLINALLERELLYSAEGHATGTECHIYYAEPKQEKVVLTFLSEADIREQVNIICHKLNMEQAGNINNPEAKSILTEMGQKIIEQEGGESKSEKAKQAKALILLLEGFTNNRDRIHTINAATYSMEQFNFSNLTEAASYARRGSNSSVLKRLDYYCHHPLLKDGNVLVDMPGIDAPVKKDAEATYNKIEHPDTSAVVCVLKPASAGDMTTEETELLEKMRENLGIRDRIFYVFNRIDETWYNGQLRQRLDSLIQTEFKDTSRIHKTSGLLGFYGSQIKHTNSSNRFGLDTLFSESVKSMGGEEETPQFVSEFNNYCANSGKLTRTDFKVSVNGYETPNENYVRILSEWGNPLINQLITDSGIEEFRDSITRYLTEEKRPQLFATLADDLQPLCIVLRKHYLDHYRKLASQPREIDAMKAQELNRLNHELQEVGIQFRDHIAHEVNEIVVNGDHYFEEDFKKLKARMVTRLDELLQTFSVENAHRRAAMSHPRNSTVPLIAILVEALYYLANELEDVLVEGVKTLVSSFCERLLYRVKQTEYYRKLYRLLGNDGGVENQLKEVKKTLITALVSESKVECDRYVRESPRFYDEGTFSIYQFRQTLQQTSQGYDCSSMVEAEPAIRQLLKLDFEPKVSATIRKNFRQTINMTLKSQLLPMADQQADSILQQYDQARDYLGQTLEQEAQEKIARNVRLQEEIKEKIATYNKAISEINNCLQSMQVYEHQLPLISEETLQPKVIKSNVEVIDIPVGNGHNSDVDIEVVDLV
>NC_010546.1|WP_009547445.1|3236730_3237552_+|sulfotransferase-domain-containing-protein
MVQTNRKKKHHIILTNGRSGSNYLSNLLNLHPEITNYGEVLGDWTLPYKLYKLINYFSKSNISVSDYLDYILNSQKFFAIAQYYSAYSHFKKGQKINFKKLQSIKTVGIKDFSINFLKRGVNNYITERSNLYIINLYRENSLKRLISLEAMNITGVIASKETQRKNNSKIYLFTDNLIAKIELYEKEKQSQFELVKLSPKNKILEIKYEDYFLSYENQELYNQKIFDFLGVSKLNLVSQHKKILSQNLVDILKNYDEVVEIIQGTKYEKFLHD
>NC_010546.1|WP_009547454.1|3245189_3245408_+|hypothetical-protein
MSQTLQFHQILEIIDDLSLDEQEDLINIIRHRQIEKRREEIAENINQARQDYQQGKGFRGTIDDIIAELNND
>NC_010546.1|WP_009547455.1|3245400_3245685_+|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MTNLILSSSFKRSFKALIKRKPDFKQKIESKLRLLADDPYNPILRTHKLKGKLSGAWACTVEYDCRIVFCFEQNQETLEEEINLIDIGTHDEVY
>NC_010546.1|WP_009547456.1|3245959_3247198_+|tryptophan-synthase-subunit-beta
MTTTPISPSSNQTQYPDEIGRFGQYGGKYVPETLMPALSELETAYRRYKDDPDFQAELSQLLKDYVGRPSPLYFAERLTEHYARPDGTGPQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLECVIYMGIHDMERQKLNVFRMKLLGATVQPVEAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHHIIGQETRQQCQEKWDTLPDILLACVGGGSNAMGLFYEFVKDADIRIIGVEAAGESIVSGKHAATLTKGRPGVLHGAMSYLLQDEEGQVIEAHSISAGLDYPGVGPEHSYLKDSGRAEYYSVTDAEAVAAFQRLSELEGIIPALETSHAIAYLETLCPQLEGSPRIIINCSGRGDKDVQTVAKYLGNE
>NC_010546.1|WP_009547457.1|3247325_3248048_+|ribonuclease-III
MMFVDSRRKKQLETCLQKLGVWDTSVVNLELLDLALTHPTISRETNYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWLADAFEAVLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRVTEQHKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDAFYSVVHQKIEG
>NC_010546.1|WP_009547458.1|3248050_3248794_+|dienelactone-hydrolase-family-protein
MTQLDIKTEDIVIKNGDLNIDGYLAMPTEDGEFPAVIVVQEIFGVNNHIKDVTRRFAKEGYVAIAPAIYQRLDPGFETGYTPEAIEIGRKYKNQTKADELLSDIQATIDYLYTLSQVKKTGVGTIGFCFGGHVVYLVATLPKIKATASFYGAGIANWKPGEEGKATVDCTPDIKGTLYAFFGKEDGSIPQEQVDMIEKALKDHNIPHKVFRYNGAEHGFFCDQRGSYNAEAAQDAWPKVLELFKSEL
>NC_010546.1|WP_012362078.1|3249013_3249961_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MKKKLYYLLCVFLGIMVMFLVFIPSHTVAQNSPMEIKIATGNEAGEYYSVAKDLEKFALTKNLDLDLIPTRGALDNIDTVFRHETIPLGVTQSDLLAFLNTFANKDEMARLTAESIRAVLPLYDEEIHLITRKDINSASELTGKRVSIGESGSGTSTTASTLIYHLDIQPKAIQALDIKRSIDALRKQEIDGFFYVVGVPAKVLEEQILPEDNFQVLPLALPTQPNDEFLAKIYANAVLPANTYSWQTEPVNTLKVKSYLFTFADEDCNYVTPVAKLIRENLAWFQENGDPVWKKVNPKDLSQLNSQRVSSCAAM
>NC_010546.1|WP_009547460.1|3249985_3250582_+|DUF3011-domain-containing-protein
MIINCLNHFTIVTGISLGLLLQTIPAEAQRTITCESFKYRYQFCRTNTRGGVRLTRQLSNTRCVEGDTWGYDREGIWVDRGCVAEFSVRGRDPGYDNSNNSSGGSDAAAIVGGALVVGAIAAAIAGGSNNNSSDGRTITCNSDNDQYTTCPVSLGRDDWIVLDRQLSQAGCWEGDTWGYDSQKIWVDNGCRGVFEIRR
>NC_010546.1|WP_035857510.1|3250673_3251852_-|tetratricopeptide-repeat-protein
MIVKNEEATLSKCLESVQDVVDEIVVMDTGSTDKTVEIAQKFGANIPTFEWGNDFAEARNEALKYVTGDWVLILDADEVLNKKVAPQIKEAIDKDENLVVNLVRHEIGSSQSPYSLVSRLFRKHPEVSFSRPYHAIIDDSVSELIKKESHWKIVDLPAITVFHYGYTPGAIASLDKYNRAQQAMEKFIKEHPNDPYTCSKLGALYAQIGKEKQAIKLFKQGLKSNKADTHVLYELHYHLGNLLSKQEETEKAIKHFQKAIDQPIMPPLKLGAYNNIGVVLQSMGDYKNAAQAYETTLKIDPSFITGYYNFAMTLSAMGKLADAVAIYEKLISLSPNYAAAYQNLGVVLFKLKKLPESSEAFKKAVSLYEAQNNQVAAESLRNGLKELGIWEG
>NC_010546.1|WP_009547462.1|3251890_3252646_-|DUF2993-domain-containing-protein
MTAVVFGTLPFPNQGGDQIVSKAVSTAIAALFKRTGKIEAMVRAEPVAKLLQGSVDGFDFIGNGMLMYNGLRIDGMELYVEAVSIDFSAIFKGQVKLRQPTQATMRVVLTEEDLTTSFNTPFVVEKLQRLQYEGQALNFKKTEMLVNEDKSLTLRSQIQLGKTGETVNLDMTSEIEVLDRRKIQFVNVTYKGDEKAKNLGKSLIDHVNNLLDLDKFALDGTQLKVDRVRIRKKELIFYGIAKIDHFPQRKK
>NC_010546.1|WP_009547463.1|3252851_3253268_+|hypothetical-protein
MNVKIVHENLDIKRKGQLTMKNLRLTQSVIVLTAIVAGGGISSNAYAQADPQDEIRYVQETVKVLYEEEPNQAFTVRELLQDGYKMCETIANNTNNNSLENLAEDAIRSGLGIGRSRSQESEDNPEMMRIAQRYLCES

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Crispr_ID: NC_010546_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_10

3921434-3921618

TypeV-U5

Consensus_repeat	Method
ACTTTCAATCCATCTCATTAACCAAAATAGATTGTGACGACAGAA	PILER-CR
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGAC	CRISPRCasFinder

2 spacers

c2c5_V-U5

The CRISPR arrays of NC_010546_10

>merge|NC_010546|10|3921434-3921618|PILER-CR,CRISPRCasFinder
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGACAGTACAATGACAGGGTTTTGATTCCAGATTCTTACTTTCAATCCATCTCATTAACCAAAATAGATTGTGACGATGGAAAATATACCTCAAACAAGCATTACCACTTTCAATCCATCTCATTAACCAAAATAGATTGTGACGACAGAAG

>NC_010546|10|4|3921434-3921618|PILER-CR
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGACAGTACAATG	ACAGGGTTTTGATTCCAGATTCTTACTTTCAAT
CCATCTCATTAACCAAAATAGATTGTGACGATGGAAAATATACCTC	AAACAAGCATTACCACTTTCAATC
CATCTCATTAACCAAAATAGATTGTGACGACAGAAG

>NC_010546|10|10|3921434-3921610|CRISPRCasFinder
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGAC	AGTACAATGACAGGGTTTTGATTCCAGATTCTTA
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGAC	GATGGAAAATATACCTCAAACAAGCATTACCA
CTTTCAATCCATCTCATTAACCAAAATAGATTGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009545062.1\|3924256_3924685_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_010546.1\|WP_009545059.1\|3928631_3928865_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009545058.1\|3928908_3929988_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009544805.1\|3928021_3928561_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372649
NC_010546.1\|WP_009545061.1\|3924773_3925841_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|334588
NC_010546.1\|WP_009545066.1\|3919352_3919868_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009545060.1\|3925857_3927453_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NC_010546.1\|WP_009545072.1\|3914823_3916044_+\|ISAs1-like-element-ISCysp6-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_010546.1\|WP_009545063.1\|3924035_3924188_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_010546.1\|WP_009545075.1\|3911199_3913284_+\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NC_010546.1\|WP_009545073.1\|3914053_3914722_+\|NTPase	unknown	unknown	gnl\|CDD\|284995
NC_010546.1\|WP_009545065.1\|3919967_3920903_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215029
NC_010546.1\|WP_009545074.1\|3913637_3913991_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009545057.1\|3930000_3930420_-\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377317
NC_010546.1\|WP_009544806.1\|3927516_3927984_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NC_010546.1\|WP_009545070.1\|3916862_3917534_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_010546.1\|WP_009545069.1\|3917684_3918212_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|319977
NC_010546.1\|WP_009545067.1\|3919061_3919352_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009545068.1\|3918242_3918806_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009545064.1\|3922499_3923594_-\|hypothetical-protein	c2c5_V-U5	-	unknown

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009545062.1\|3924256_3924685_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.56704e-18
NC_010546.1\|WP_009544805.1\|3928021_3928561_-\|transposase-family-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	3.57464e-17
NC_010546.1\|WP_009545075.1\|3911199_3913284_+\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_010546.1\|WP_009545072.1\|3914823_3916044_+\|ISAs1-like-element-ISCysp6-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.77023e-40
NC_010546.1\|WP_009545060.1\|3925857_3927453_+\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	5.63234e-05
NC_010546.1\|WP_009545073.1\|3914053_3914722_+\|NTPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	2.25765e-27
NC_010546.1\|WP_009545065.1\|3919967_3920903_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	2.3076e-152
NC_010546.1\|WP_009545061.1\|3924773_3925841_+\|DNA-methylase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	6.5141e-09
NC_010546.1\|WP_009545057.1\|3930000_3930420_-\|DUF488-domain-containing-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	1.72314e-18
NC_010546.1\|WP_009544806.1\|3927516_3927984_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.38155e-19
NC_010546.1\|WP_009545070.1\|3916862_3917534_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	2.96503e-30
NC_010546.1\|WP_009545069.1\|3917684_3918212_+\|phycobiliprotein-lyase	gnl\|CDD\|319977	cd16339, CpcS, S-type phycobiliprotein (PBP) lyase. This family contains the S-type phycobiliprotein (PBP) lyase (denoted CpcS/CpcU or CpeS/CpeU). PBP lyases are employed by cyanobacteria, red algae, cryptophytes and glaucophytes for light-harvesting. Pigmentation of light-harvesting phycobiliproteins of cyanobacteria and cryptophytes requires covalent attachment of open-chain tetrapyrrole chromophores, the phycobilins, to the apoproteins. PBP lyases mediate this covalent attachment of phycobilin chromophores to apo-PBPs and also ensure the correct binding of the chromophore with regard to the specific attachment site and stereospecificity. The S-type lyase is distantly related to CpcT and similarly adopts a beta-barrel structure with a modified lipocalin fold. Many members of the CpcS/CpcU family ligate phycocyanobilin (PCB) to a specific cysteine residue in the beta-subunits of phycocyanin (CpcB) or phycoerythrocyanin (PecB) and to a related cysteine residue in the alpha and beta subunits of allophycocyanin (AP); they are typically given the designation of "CpcS" or "CpcU". Other members which attach phycoerythrobilin (PEB) to the beta-subunit of phycoerythrin (PE) are given the designation "CpeS" or "CpeU". In Guillardia theta, a Cryptophyte, which has adopted phycoerythrobilin (PEB) biosynthesis from cyanobacteria, phycobiliprotein lyase has been shown to provide structural requirements for the transfer of this chromophore to the specific cysteine residue of the apophycobiliprotein.	5.90809e-68

>NC_010546.1|WP_009545065.1|3919967_3920903_+|NAD-dependent-epimerase/dehydratase-family-protein
MRILIMGGTRFIGVYLTKELVKQGHEVVLFNRGNKAAPIEGITQIHGDRKDANQLKEKLASESFDAIFDNNGRELSDTQPLVEIFNNKVKHFVYVSSAGVYLKSDQMPHIEGDEVDPNSRHKGKFETESYLGKSGIPWTSIRPTYIYGPQNYNDLEAWFFDRIVRNRPIPIPGNGLNFTQFGHIQDLAKGMAAVLGNEQAIGQIYNISGERYVTFDGLAKACAVAAGKSADDIKIVHYDPKQFDFGKKKVFPLRMQHFFADIHKALQELDWKPEYDLINGLKDSFENDYLASKRDQADIDFSLDEQILSES
>NC_010546.1|WP_009545066.1|3919352_3919868_+|hypothetical-protein
MGKHSPNHFRQYIEIHETIIDQFKVKDFIGDETLEFITMGFSYNLIGEIACRGNIVINVDKLIDVISGSGVNALLQTRWYAYNVFVRNRFNLFRYDNQDDYFLSLGQEHKDEHHKHLFDWETGEELPDSPIWVGEDSWPTLGEVIKETEQWYWSNRDQLEYPDSYPNLDLR
>NC_010546.1|WP_009545067.1|3919061_3919352_+|hypothetical-protein
MKIKTQGLKLSTLSSMSPQEREDKINSFIEQVINPQPEQVEEQKKEIEEEIRAYERRYEISSAKLKSGLADGSIKGTTDICSWLMLLKKRTLLENI
>NC_010546.1|WP_009545068.1|3918242_3918806_-|hypothetical-protein
MYINDDRLGNKSQAVASTDLSLLVSDENLQLDDNTQHEENPAESTLDSSLDPVGIFIWEIVENLIEQRSQITIKDVLEEIEEREGSIKPGDSAVRERLSQLTDLGFLECLPGSGRRPSYYFLAGDERLENHVVEPSDTEILNKIKQKQSEVQQQIEDLQQQLDELLADQKEMEQLIEKGQKLRRKYR
>NC_010546.1|WP_009545069.1|3917684_3918212_+|phycobiliprotein-lyase
MDIQTFLESCIGQWFSQRSSYQFDTEKAESHKSELTVEWLNTDHSLLVSLCQEHRIDPNQAIGGQQVSWNSSVDYGQKKQTGSATMIIIPDSNTPKIGKIIQSFKSNPSSQGKYSLGEDEALNLTLEVGDFLMEERIWFASPNLRLRTSLMKGENGYSRTAFYSEIRRLPPQEVA
>NC_010546.1|WP_009545070.1|3916862_3917534_+|HEAT-repeat-domain-containing-protein
MISTDLEQISLQLESENSRDRLLALASLRQVSAEDAVPLIKKVLDDEILQVRSMAVFALGVKQTDECYPILVKLLETDPDYGIRADAAGALGYLQDPRAYEPLSRAFYEDTQWLVRFSAAVSLGNLGDVRAKELLLQALESEETVMQQAAIAAIGEIRAVDAIDEILRFANSEDWLVRQRLAQALGNFNTEKSISALNFLAKDGQPQVREAALFSLNLLEPDN
>NC_010546.1|WP_009545072.1|3914823_3916044_+|ISAs1-like-element-ISCysp6-family-transposase
MAKGFADQKQSSKKKKEKGNIASIDEIQNNLLGYVKEIEDPRVQRSKKHLLKDVLAIAILAVIAGSQGWEDMENYGIAKQEWLSEFLELPHGIPSDDTFRRVFERIDPESLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNAGQCALHTVTAWASQQSLVLGQVKVENYSNEITAIPALLELLDITGSIITIDAMGTQTSIIQQICRQKADYIVTLKANHPTLFSQVKQWFTDTQNNGWDGIEHDYYKSVTKGHHRTEKRYVWAIPVAAMGELYQQQQWHGLQTIVVVERIRHLWNKTTHDIQFYLTSLPPNAQFLCHAIRTHWSIENNLHWTLDVTFSEDQCRIRSEYSPQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNSFCQADFR
>NC_010546.1|WP_009545073.1|3914053_3914722_+|NTPase
MSLEQNFATDEPITKLEQDILGRGQFSKNLAQAICRYKGDDSLVIGLYGSWGNGKTSIINMVKEVLNPDENEDKKDKPLVIEFKPWYFSGQDQLLEQFFKHLSSELTSNIEKFGQKAKGSIEKIGKNLSRLSSALKPVKYVSPFIGVPSEIIESLSAKGEEFGKALSGEKNDQQFDPITQKKELDKELKDLDRKILIIIDDIDRLTKEEMRQMFRVSSSKMV
>NC_010546.1|WP_009545074.1|3913637_3913991_+|hypothetical-protein
MTLDIDRNIEQQEEMELEDQLSCLTADLIEYKKNKDFIKNLFNIESGKWTDINILCQGMSHLQKQLELIKNCCNEQLKVTWLDYPVSTMGEGYCLIIFYLECLHWDNVALYNKKDFI
>NC_010546.1|WP_009545075.1|3911199_3913284_+|M3-family-metallopeptidase
MSNTTVTNNPLLIGQGLPPFDKITHDHVIPAMTELLQELEAKLSDLEAKVQPTWEGLVEPLTEIEEKFSWSWGIVGHLMGVKNSPELRNAYETVQPQVIHFVNKLSQSKPIYEAFKSLQESKLWNTLENAQKRIVETAIREAELSGVALTGETREQFNQIQLELAELSTKFSNHVLDATKAFKLKLTTEKEVEGLPPTLLSLAAQTARAEGEENATPEAGPWVITLDYPSYIPFMKYSTQRDLRKKVYKAFISRASSGELDNNPLIKRILELRKQQAEILGYNTYAEVSLARKMAPSVEAVEALLEELRKVSYDAAVKDLETLKDFAKSDDLKQWDVSYWAEKQRETLFNFTAEELRPYFPLPQVLDGLFTLAKRIFGVTITSADGQAPVWHEDVRYFQVNNEAGEAIAHFYLDPYSRPAEKRGGAWMNDCIGRAKIKLEEQFMTRLPVAYLICNQTPPVDEKPSLMTFDEVTTLFHEFGHGLQHMLTKVDYPGAAGINNVEWDAVELPSQFMENWCYDQTTLFNMAKHYETGETLPEHYYDKLVSARNYMSGSGMLRQLHFSFLDLELHHRYQPDSKETPADVRNRIAEKTTVMKPLPEDSFLCSFGHIFAGGYAAGYYSYKWAEVLSADAFSAFEEAGLNDEKAVSETGKRFRDTVLALGGSLDPMEVFKAFRGREPQTEPLLRHSGLLQTA
>NC_010546.1|WP_009545064.1|3922499_3923594_-|hypothetical-protein
MLKRLQEQINSRLPQGRDVTNENWLETLKIACCTDPENIEEARSWQDNLLTKSSSIPFPINYETNEDLTWSKNEKGRLCVQFNGISDLKFEIYCGNRQLKWFQRFYEDQQIKKSSKNQHSSALFTLRSGRILWQEETGKSQPWNVHRLTLQCTLDTRLWTQERTEEVKQEKAEEIAKVLTSMNEKGDLTKNQQAFIKRKQSTLDRLENPFPRPSQPLYQGKSNILVGVSMELKKPATIAVIDGMTRKVLTYRNIKQLLGKNYPLLNRQRRQKQLQSHQRNVAQQKEAFNQFGDSELGQHIDRLLAKAIISIAQEYQAGSIVVPKLKDIREAIQSEIQTKAEAKIPNCIEAQAEYAKKYRIQVHQ
>NC_010546.1|WP_009545063.1|3924035_3924188_-|hypothetical-protein
MSQITIQCRLVAKEPIRHTLWRLMTDLNTPFINELLQKVAQHPDFEKWKQ
>NC_010546.1|WP_009545062.1|3924256_3924685_+|MerR-family-transcriptional-regulator
MGEIFFTSKDAAKITGCTLRQLQYWREKGVIVPMVSATGTGRSVYYSRSELVELAVMVNLLSVGLTFESASGVLQQLREIEPNFAEEKSQRRLMLVFDTSEGMLRLKDFERESAIAFLDQGFPVIPVWVDEIYQKLDAQLLN
>NC_010546.1|WP_009545061.1|3924773_3925841_+|DNA-methylase
MQLIQTRPKKSSRTTTKAWLKTLTLACSYAGLSGKKSPWDLADLTLQVQTRWQNDSRYNLKELSNACNISESRLRLLARTAKFYPPQKRFQQLSITHHIEAMRKAPDKAYYWLNQALEKKWSGREIRLAISGDGDPKKFSWLRCGTFWYFSHCDPRFGIKYPGRIPGQIPANLIHYFTEPNDLVVDLMAGGGSTLDAAKFLDRKCLGYDLVSVRPDILINDALVGIPKEAYNAKLIFLDPPYGAIAKNLYSKHPHCLSQMNEKEFVKALVTISEYCGQALVSDGYLAILLQNVYDWESDTVFKIIQSFFDNNWKLVRRIQAPISNQQISSSVMKWARENRKMINTDRDLLIFQMI
>NC_010546.1|WP_009545060.1|3925857_3927453_+|ATP-binding-protein
MNNQKFNGESLYVLPDSEKGDKSLKICIDFDATSEQPKFKRNDYVLISQSEQHQWVGQIADVERIICPMGQYSDNTIEYLRRQVLAPDTVRPLRVVRLFEVRIIGQYIDDELDVPLNNILPGALVSKLDEKRIRNLINIPQIKTYSDKSQNVVGIIQNAENIPLTIDRLIIRDHIGVGGASGRGKSNLNENLVAIAQQEGCCIIQHDAKPDFRYIEKANTDSHPAIQANWEKFKDYGLKPRGAKDVFRIAIANHLPPDDVKVDMILGFNASDLNPELLAQLLSPGTDQASINAQDNLVKAIYGLRRRDYTLNDIVAEVQRRRADDETAQNNYQAADLIHPMTVDSILRKINSNRQRLDWLDTVGNSVNRGDINKSKHLASNKNPQKVQRFTPEHIFKSGRIIMIDYHNISKDDENSYAIILEYLLRQAHDYVLNSDLNIVEMIDEAHRVFNNTSRRASALVKSFTKFAREGRVKGHWMIVSTQLFSDIDPEVRENLNTRFVLQQNTRDAAKIATENMGSDFIDTVDISKNP
>NC_010546.1|WP_009544806.1|3927516_3927984_-|transposase
MPKAEDIIDVVIGKPGPTSDINICRQTLNKFKINQTFSADKAYIGETQIITPHKKTKKRELTEAQIKENKALSSNRIFVEHLIRVVKVFKVVQERFRLHKSRYKSVLLTVCGLVRLRISSLILKIIESSQSGEVIDVIMSHSFMSKLELIPSTPY
>NC_010546.1|WP_009544805.1|3928021_3928561_-|transposase-family-protein
METYTWSYLKKYPKQTKRLLGIDDNQLEQLIALGKLLHQKKKEENEKTKIRINQPGAGSPSLLAEEEQIVLTLVYLRHNISFQLLGLLFQVSESTAHNIFTYWQTLFEGELPPSLLEQIKKFQEEKEIVLEMLTDYELIVDSAEQAIERPSDYQEQKKYYCGATPAIRNRLGNAHQETG
>NC_010546.1|WP_009545059.1|3928631_3928865_+|hypothetical-protein
MISLGKGKCLVKTNESQAVLQVAIAPSPFELMRDDNRNKKGVYQAPQHRTQNKNNSKTKKADSDLEDKEDKYDYSAF
>NC_010546.1|WP_009545058.1|3928908_3929988_+|hypothetical-protein
MDFSEMLKDSKQVTYDDFVIDSGGIADDIIEMFTNPLAIEVQEIYKKDILELKNIKTDKGTVFGLRKLNFGDISQAPEVLSGQVAAVDGTFALPRQDYSTGSAVCVAVGSATMTRTLQDSLHYWSSTKALKNTQDIDDFLDLRQEHLYKPNNSAFMRYFEAAHALKIDEKFIFFDGLLCDEWLANTKEGAALYREMLEHPNKKFIGVIKSCKKNLMFSQYARACPSGSILLIETLYEHINRRESETRFSLHSNKQEVRSFWNELSPRIIRGVFKPYKRAFGFEVLEDHLDDMIRLLAADAHMSQEGHEIPYLLNLVDGEIRRMFKRHKLLNDIALKMNQTSDSIYQEEWDEHAFRPQQA
>NC_010546.1|WP_009545057.1|3930000_3930420_-|DUF488-domain-containing-protein
MNNTSIHQSFILTFGYGNRSNYDTLLNYIKEFKIDFLIDVREKPRAWSRKWYGDQIEKFCHEQGIEYLSETTLGNVSGTSHWVSPDPEKADQVLQDIAQKAKSKTILLLCAEMDYHRCHRVEVAEELKKLTHQPIKHLK

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Crispr_ID: NC_010546_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_11

4610916-4611037

Orphan

Consensus_repeat	Method
GGGGAAGATTAACATTAACCTTTAACTTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010546_11

>merge|NC_010546|11|4610916-4611037|CRISPRCasFinder
GGGGAAGATTAACATTAACCTTTAACTTTCACGCTTCAATACCCCGAAGCAATCCGAAAAACACCACTAAAGTATCAGTGGTCATTGCGAGGGGGAAGATCAACATTAACCTTTAACTTTCA

>NC_010546|11|11|4610916-4611037|CRISPRCasFinder
GGGGAAGATTAACATTAACCTTTAACTTTCA	CGCTTCAATACCCCGAAGCAATCCGAAAAACACCACTAAAGTATCAGTGGTCATTGCGAG
GGGGAAGATCAACATTAACCTTTAACTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_012362459.1\|4605924_4606200_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543482.1\|4607123_4607360_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543480.1\|4609273_4609654_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350308
NC_010546.1\|WP_009543485.1\|4605171_4605735_+\|late-competence-development-ComFB-family-protein	unknown	unknown	gnl\|CDD\|378482
NC_010546.1\|WP_009543470.1\|4618861_4619248_-\|DUF2358-domain-containing-protein	unknown	unknown	gnl\|CDD\|370865
NC_010546.1\|WP_009543467.1\|4620449_4622309_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236014
NC_010546.1\|WP_024750158.1\|4601957_4602887_-\|spondin-domain-containing-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543471.1\|4617632_4618826_-\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	unknown	unknown	gnl\|CDD\|367057
NC_010546.1\|WP_009543481.1\|4607544_4609248_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NC_010546.1\|WP_009543475.1\|4614578_4615493_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543473.1\|4616103_4616970_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_010546.1\|WP_035857577.1\|4617229_4617439_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543476.1\|4614233_4614530_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543477.1\|4611195_4614024_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227328
NC_010546.1\|WP_009543478.1\|4609974_4610862_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_010546.1\|WP_009543483.1\|4606202_4607057_+\|prephenate/arogenate-dehydrogenase	unknown	unknown	gnl\|CDD\|180970
NC_010546.1\|WP_009543486.1\|4602987_4604799_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_010546.1\|WP_009543474.1\|4615516_4616092_+\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543479.1\|4609663_4609924_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543468.1\|4619791_4620331_+\|siphovirus-Gp157-family-protein	unknown	unknown	gnl\|CDD\|368503

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009543480.1\|4609273_4609654_-\|PIN-domain-containing-protein	gnl\|CDD\|350308	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.99464e-29
NC_010546.1\|WP_009543485.1\|4605171_4605735_+\|late-competence-development-ComFB-family-protein	gnl\|CDD\|378482	pfam10719, ComFB, Late competence development protein ComFB. This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.	5.86586e-21
NC_010546.1\|WP_009543470.1\|4618861_4619248_-\|DUF2358-domain-containing-protein	gnl\|CDD\|370865	pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358). DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.	1.68279e-43
NC_010546.1\|WP_009543467.1\|4620449_4622309_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|236014	PRK07418, PRK07418, acetolactate synthase large subunit.	0
NC_010546.1\|WP_009543481.1\|4607544_4609248_+\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.0535e-47
NC_010546.1\|WP_009543483.1\|4606202_4607057_+\|prephenate/arogenate-dehydrogenase	gnl\|CDD\|180970	PRK07417, PRK07417, prephenate/arogenate dehydrogenase.	0
NC_010546.1\|WP_009543473.1\|4616103_4616970_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.23703e-121
NC_010546.1\|WP_009543477.1\|4611195_4614024_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	1.92354e-52
NC_010546.1\|WP_009543478.1\|4609974_4610862_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.27199e-36
NC_010546.1\|WP_009543468.1\|4619791_4620331_+\|siphovirus-Gp157-family-protein	gnl\|CDD\|368503	pfam05565, Sipho_Gp157, Siphovirus Gp157. This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophages. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage.	2.11564e-23
NC_010546.1\|WP_009543486.1\|4602987_4604799_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_010546.1\|WP_009543471.1\|4617632_4618826_-\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	gnl\|CDD\|367057	pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.	4.98987e-136

>NC_010546.1|WP_009543478.1|4609974_4610862_-|site-specific-DNA-methyltransferase
MKYLNQIIQRDCTEILQELPDKSVDLIILDPPYWKVIQQKWDYQWRTEEDYKEWCLQWLSEISRVIKLSGSLYLFGYLRNLFYLYEPIIDLGFNFRQQIIIDKGMKAISGRATKNYKMFPNVTESLLFFIYNSRPFIKQFLKQRQKELGLTALEINKRLGVKSNGGGMWSLYTGNNILAQVPTKEMWEKLQDILEFNYPYEDISATFNIEMGVTDVWNDINFYEEKRFHPTQKPVKLMERIIRASSQENMIVLDPFMGSGSTAIACLNLNRHYIGIEKEKKYIDKINSRIENFYN
>NC_010546.1|WP_009543479.1|4609663_4609924_-|hypothetical-protein
MEINIEIPKELEQELSQEASQINLSLSDYILHLLSARKVLNETPKTGKDLIAYWQQEGLINCRSDIKDSQEYARQIRYEAEHRHQI
>NC_010546.1|WP_009543480.1|4609273_4609654_-|PIN-domain-containing-protein
MYVLDTDILIDVLRGYQPAITWFTTLQDIPSIPGFVVMELIQNAKNKQQVNQVFKLISPLSIIWLTESDCNQALLDFSQYHLSDGVGLLDALIAHCVISNNGTLCTFNVKHYRVIPNLKIIQPYNR
>NC_010546.1|WP_009543481.1|4607544_4609248_+|ATP-binding-protein
MTDHPLGAVVQGSLSQGLEVRLHSDVSVEQMRVGKFLVVQGVRSRFFCLLTDVSLGTANPRILANPPSFQDTFMRDVLSGSATYGNVELAPMLMFTPTDEEENHNSHTEDTSLGSFQAQTNADIELLPVKTIPTHFSQVYEASERDFRAVFGWEDDPTRRNFAIGKPLDMDVPICIDLDRFVERSNGVFGKSGTGKSFLTRLLISGIIRKQAAVNLMFDMHSEYGWEAMKEGKEVSTVKGLRQLFPGQVEIYTLDPESTKRRGVSDAQELYLSYDQIDIEDIRLVGHELGISEASLDNANILEAEYGKSWIMQLLNMTNEDIKLFCQEKQGHAGSIMSLQRKLMRLDNLKYLRTACPHNYINQVLESLDAGKHVVIEFGSQSNMLSYMLATNMITRRIHGSYVKKAEKFLQTKSPSDRPRQLVITIEEAHRFLDSKIVHQTIFGTIAREMRKYFVTLLIVDQRPSGIDNEVMSQVGTRITCLLNDEKDIDAIFTGVSGGQNLRSVLAKLDSKQQALILGHAVPMPVVIRTRAYDQQFYAEIGETDWSELPDEEVFAAAETARAELGF
>NC_010546.1|WP_009543482.1|4607123_4607360_+|hypothetical-protein
MNNKTSINLTQKIFVNISLILLGISANATFFSLMVTFLLGTVILSWLHDQKDKFSLNTTKINKKSEKIVTSSVINHNK
>NC_010546.1|WP_009543483.1|4606202_4607057_+|prephenate/arogenate-dehydrogenase
MKIGIIGLGLIGGSLGFDLRNCGHIIYGVSRKESTCQRAIEREVVDHASININSLSTVDLIFICTPITLISSTLKQLTSNLRPEVIITDVGSVKTAIVKECEPLWSNFVGGHPMAGTAEQGIEAAQKNLFKAAPYVITPTENTPKNSIKILEQLAQSLGSKVYTCSPEIHDQAVAWISHLPVMVSASLIAACVGEKEKTVLNLAQQLASSGFKDTSRVGGGNPELGLMMAQYNKTGLLHSLQGYRQQLDEVIEYINREEWDSLEQLLMMTQKKRPPFIGGQKNS
>NC_010546.1|WP_012362459.1|4605924_4606200_+|hypothetical-protein
MLSLTVPFIEFIQSLIVPFCFIIAWVFIVMLGSSVIGIIVDVIKRSKKMHEIPCSHCQYFTNDYHLKCPVNPFQANTEEAINCKDYQMREY
>NC_010546.1|WP_009543485.1|4605171_4605735_+|late-competence-development-ComFB-family-protein
MSASLDSRAKIHVNIMELLVQEEIEKQLKLYPKNLKNYINKVEVATYALNRLPPLYASSAMGKEYQKRTGKKQYQSQINLAVRRALAAIERDPIKQSVPIVLDSSTEYELAKVALNKLEEFLQIQGIIANYQKLSWNNLNRILYPLIIKAKQQQKKRENVEFEALTYGSKKLNQELSENSNSFQFWK
>NC_010546.1|WP_009543486.1|4602987_4604799_-|proline--tRNA-ligase
MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQDRELGLGPTHEEVITTVAKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQRSYDAMDQAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDGKYAANVEKAVSLPKDVKTSPFTTYEKKETPDCNTIEKLCQFLECSPTNIVKNVLYEAVYDNAKTVLVLVSIRGDQEINEVKLNNELVKLASNYQASTLLALTVPDENAQKKWAKKSLPVGYISPNLEDDYIASGEYIEGKFLRIVDKTAVDLENFVTGADETGYHIVGASWNKDFKLPQLICDIRTAMIGDRAVHDTSQTLASARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAVEQSYDKDGIIWPVAIAPYQVIIIVPNINDQNQIEVAQNLYDKLNKMGVETLLDDRDERAGVKFKDADLIGIPYRVVTGRSLKSGKVEVVTRKSKESQEIEVKNLVETLHNWVEQGKVNH
>NC_010546.1|WP_024750158.1|4601957_4602887_-|spondin-domain-containing-protein
MMNLFKNSKALLTVLTLGSVATTASATQALTLKVEVENLSPLGGVALTPVWVGFHDGSFDSYNGGLSSQRGLEQIAEDGDATTISQDFLNNLTYIDDNGTPGDPSDDISGIFVSNQVGTRVDGSIGGSPIAPGTSVMNLFKITPDDSNRYFSYVSMVLPTSDYYVANGNPLAHSLTTLLTGEETSISFEIGLPGTVDDAGTEINDFDTSAGNGLFGIPGGQTGGNQGADENGVNTTVNDPFANFLNRPANFEIDFANLDFNDANLYPNGIARVTITRVSVPESSTTVGLIAIAALFFLGNSLRRRQHSN
>NC_010546.1|WP_009543477.1|4611195_4614024_+|tetratricopeptide-repeat-protein
MKAILSSLITLSICLTPITPILTVQPATAQTENLSEQALQLLQQSIQLGQQDKYQEAIETLQRALGISKKIKNKELEITALLGLGFTYRSINKPTQALDYYEQALSITREVSDYLGEATILINIGFVYNNIDKPTEALDYYKQALPIMRQLGDVLGEATTLNNIALVYSNIGKPTEALNHYEQALLIVREIGDRLKEATTLNNIGLVYNNIGKPTEALDYFNQALPIRRKVGDRSGEATTLNNIALVYNNIGKLTEALDYFNQALLIRREVGDRSGEAATLNNIGAVYWSIGKPTEALGYYEQALPITREVGDRSGEAATLNNIGLLYNNIGQLTEALGYYEQALPIVREVDDRSGEAATLNNIGLLYNNIGQFTKALDYYEQALPIVREVGDRSKEATTLNNIGLVYNNIGKPTKALYYYEQALPIIREVGDHSGEAITLNNMGYVYRDTNYPIKAIKHFEDAVNITLEMRRGLKREDRKTFLKQKENTAIALIKLLIEQNQPEKAFEWANLTTTFDLADYNRLINAQVANPQIQKEIDDWNQKNERLNFLRQQLEEEFSTAKAQQVNELQAELNLQAEAIADQHPEVAELFEIKPTDIAILRENIAPDTAIIQPVILSDKIALFILTSEDVKVITKDIDSDEFNQLITEYRQQLSHYANADVFVTSEKIYDILIRPLESEINTIAPENLAIIATGKLRYIPFETLSDPETGEFLLEKYPIHYLTRISTHAIPPNSTLERGEKTLSALALANPKPTNINLSGTEKEAKHLEDNFPGSEAYLGTDATLQTFKDNASRFPILHLGTHGCFDPDGCPNLGMEANTILFANNEQYNIADAALLGLKNTEILVLSACQTAKEANANGRELSGLAFVLERAGAKTVMASLWNAEDDTSANIMTNFYTNMKQGMSKNEAMQLAKLNYLETGEYDHPYFWSPFILIGNN
>NC_010546.1|WP_009543476.1|4614233_4614530_-|hypothetical-protein
MTEPSSITYSIAEMLKSIDRKLEALQKDVTDLKIEVTEVKTEVRNLKENVRDIKTVQNTLVNEVADLKGVKSLVIPIIVAVITAFLTLLARFIPNILM
>NC_010546.1|WP_009543475.1|4614578_4615493_-|hypothetical-protein
MQSRNGVFMSGSQPSQNNTQILGTFASVLGLLGIFLYFTGWIYRWAYYSYFQLELTQLSFPLRSFLFVPIQVFVGNGWASTKTIIALFLVATVIKFTLWFVEPLTVNFILPLSQPLNVTSRRRKWQKVQRSLRRYAKYFHQCTPSKLIRGLVTVIPVSLRKDLIIVIWLLIVLFWLARIQGWEDARRDAINETSTLPVFTYIFPKEDLVLGRNLDDVFIDPSLEDYRFIGDLSLFDYLRGLEDNDPSLKEPRIWRLLLENNNVIYCFFGLDKTADKKQVPAVLAIKTDKKGQVMILAPSIPKLK
>NC_010546.1|WP_009543474.1|4615516_4616092_+|hypothetical-protein
MIKLSIKIITIASLTVGLGLYFIPKNGFSLPSRPIKSIKIQNNIIPVALPYDATVTLKTNSTMSGKIVNFDQQKSEITVEKSGRSKAIAITDIEKVEFGREVKLIHSGKPVIRGEDNNANPNTTETWQEPLTHFKITNAQDGKAEVILSKLSKAELRGIRAVSQTNTYVVDELSFNDNNNHIILTVIRYSD
>NC_010546.1|WP_009543473.1|4616103_4616970_+|shikimate-dehydrogenase
MSIITGKTKLLGIIGHPVEHSLSPVMQNAEIKRLGVDYIYIPFPVKPENLETALDGFATIGVMGFNATIPHKQAIIPLLSEVTTTAKLVGAVNTVWRTEIGWKGTNTDVIGFVTPLKALNRDWNTIKPIILGNGGAARAVVVGLAELGCRDICVVGRDKDKLGQFKQSWDTSELQASITVHSWDELSGMVSESQLIVNTTPIGMFPHTQNSPVDSNLWEKLPNNAIAYDLIYNPSPTQFLKDAKQQGLTVIDGLDMLVYQGAAALEIWLQQPVSATVMSEALKQSLFS
>NC_010546.1|WP_035857577.1|4617229_4617439_+|hypothetical-protein
MNIFFNSFYFLNLSHKLYGILKSLQRNLGLEDAEIDDGSESLIREYGFFFLLFGLLFLYIVYLSFKQRK
>NC_010546.1|WP_009543471.1|4617632_4618826_-|TRC40/GET3/ArsA-family-transport-energizing-ATPase
MRVILMTGKGGVGKTSVAAATGLRCAELGYKTLVLSTDPAHSLADSFDLELGHEPRSVRPNLWGAELDALMELEGNWGAVKRYITQVLQARGLDGVQAEELAILPGMDEIFGLVRMKRHYDEGEYDVLIIDSAPTGTALRLLSIPEVGGWYMRRFYKPLQGMSVALRPLVEPLFRPIAGFSLPDKEVMDAPYEFYEQIEELEKVLTDNKQTSVRLVTNPERMVIKESLRAHAYLSLYNVSTDLVIANRIIPDTVNDPFFEKWKNNQQVYKQEIHENFHPLPVKEVPLFSEEMCGMEALERLKETLYKDEDPAQVYHQEDTIRVVQNGQDYSLELYLPGIPKEKVQLNKTGDELNIRIGNHRRNLVLPQALAALNPSGAKMEEDFLKIRFSSGVAVKS
>NC_010546.1|WP_009543470.1|4618861_4619248_-|DUF2358-domain-containing-protein
MKLLETIKNDYQTFPKNQTYSVYADNVYFKDPVNEFTGVKRYQEMIQFMSTWFKNVDLELHNIYQSDNIIHTEWTLHWITPLPWKPPISIPGRSELTFNDQNLIISHIDYWNCSRWDVLKQHFVLNPS
>NC_010546.1|WP_009543468.1|4619791_4620331_+|siphovirus-Gp157-family-protein
MTQSNHTLWNISEEMIELENLINQLQDSEELSEEEKEVKINELFSEWLTADTNFEEKAEKVAHYIKYLEAITEARKAEAKRIRVLASMSEKQGDKLRNYLIREMQRVNKTKIEGVTCKLSMRKKQPSICLKVEPEELPDEFKRVKIEPNLTEIRKALKSQKDLDWAFLSDDEDYSLTIK
>NC_010546.1|WP_009543467.1|4620449_4622309_-|biosynthetic-type-acetolactate-synthase-large-subunit
MVSSIAKITSPLAETPQRRTGAYALIDSLVRHGVKHIFGYPGGAILPIYDELYRAEARGDIQHFLVRHEQGASHAADGYARATGKVGVCFGTSGPGATNLVTGIATAHLDSIPMVVVTGQVGRAAIGSDAFQETDIFGITLPIVKHSYVVRHAEDMAKIVAEAFHIASTGRPGPVLIDVPKDVGLEECDYIPVEPGQVKLPGYRPTVKGNPRQINAALSLIETSERPLLYVGGGAIAANAHAQVQELAERFQIPVTTTLMGIGSFDEHHPLSVGMLGMHGTAYANFAVSECDLLIAVGARFDDRVTGKLDEFASRARVIHIDIDPAEVGKNRLPEVPIVGDVRQVLEQLLQRSREIDVPLDAEKTTPWLNRINRWREQYPLVAPHYDHRISPQEVIVEVGRQAPHAYYTTDVGQHQMWAAQFLNNGPRRWISSAGLGTMGYGMPAAMGVKVALPEEEVICISGDASFQMNLQELATLAQYNIAAKTVIINNGWQGMVRQWQQTFYGERYSSSNMQTGMPDFELLAKAFGVKGITVTEHSQLAGAVAEMLAHDGPVLMDVHVKRDENCYPMVAPGKSNAQMIGLPELKSSELMTELIRCTYCGTDNPVTNKFCPECGTKI

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Crispr_ID: NC_010546_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010546_12

4904616-4904809

Orphan

Consensus_repeat	Method
CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010546_12

>merge|NC_010546|12|4904616-4904809|CRISPRCasFinder
CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAACATTGTCTAGGCAACAAAAAGGGTCATCTAATTTTAATCGAACTAACTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAACTAATAGTAAAGTTCAAAAGCTAGTAATTGACTTCTATTAGACTCTCTTTTCATAAGAGAAATTAGTAAGGTAGGCAA

>NC_010546|12|12|4904616-4904809|CRISPRCasFinder
CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAAC	ATTGTCTAGGCAACAAAAAGGGTCATCTAATTTTAATCGAACTAA
CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAAC	TAATAGTAAAGTTCAAAAGCTAGTAATTGACTTCTATTAGA
CTCTCTTTTCATAAGAGAAATTAGTAAGGTAGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010546.1\|WP_009543231.1\|4891723_4893433_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_010546.1\|WP_009543219.1\|4907120_4907762_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017
NC_010546.1\|WP_009543216.1\|4909896_4910856_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|238192
NC_010546.1\|WP_009543221.1\|4905035_4905428_-\|hypothetical-protein	unknown	unknown	unknown
NC_010546.1\|WP_009543217.1\|4908952_4909777_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NC_010546.1\|WP_009543218.1\|4907969_4908689_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NC_010546.1\|WP_012362534.1\|4896811_4899028_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NC_010546.1\|WP_009543220.1\|4905643_4907083_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_010546.1\|WP_009543224.1\|4901881_4902385_-\|DUF3122-domain-containing-protein	unknown	unknown	gnl\|CDD\|371466
NC_010546.1\|WP_009543212.1\|4914247_4914853_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_010546.1\|WP_009543226.1\|4899817_4900867_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NC_010546.1\|WP_009543223.1\|4902431_4903142_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NC_010546.1\|WP_009543215.1\|4910900_4911977_-\|HindVP-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370544
NC_010546.1\|WP_009543214.1\|4911969_4913181_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|213815
NC_010546.1\|WP_009543228.1\|4894868_4896443_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277324
NC_010546.1\|WP_009543222.1\|4903160_4904099_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176228
NC_010546.1\|WP_009543229.1\|4894238_4894556_+\|DUF2973-domain-containing-protein	unknown	unknown	gnl\|CDD\|371413
NC_010546.1\|WP_009543225.1\|4901073_4901865_+\|MlaE-family-lipid-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|215575
NC_010546.1\|WP_012362541.1\|4913201_4914092_-\|carotenoid-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367884
NC_010546.1\|WP_009543230.1\|4893750_4894083_+\|DUF2605-domain-containing-protein	unknown	unknown	gnl\|CDD\|371248

Protein	Function_ID	Function_description	E-value
NC_010546.1\|WP_009543231.1\|4891723_4893433_+\|GAF-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	5.66742e-57
NC_010546.1\|WP_009543219.1\|4907120_4907762_-\|FHA-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	3.9024e-17
NC_010546.1\|WP_009543216.1\|4909896_4910856_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|238192	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.	3.3871e-81
NC_010546.1\|WP_009543214.1\|4911969_4913181_-\|glycosyltransferase	gnl\|CDD\|213815	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.	5.64981e-33
NC_010546.1\|WP_009543217.1\|4908952_4909777_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	2.74068e-05
NC_010546.1\|WP_009543218.1\|4907969_4908689_-\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	5.35979e-96
NC_010546.1\|WP_012362534.1\|4896811_4899028_+\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	5.05194e-96
NC_010546.1\|WP_009543220.1\|4905643_4907083_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	9.4239e-94
NC_010546.1\|WP_009543224.1\|4901881_4902385_-\|DUF3122-domain-containing-protein	gnl\|CDD\|371466	pfam11320, DUF3122, Protein of unknown function (DUF3122). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	5.71853e-59
NC_010546.1\|WP_009543212.1\|4914247_4914853_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.24059e-05
NC_010546.1\|WP_009543226.1\|4899817_4900867_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NC_010546.1\|WP_009543223.1\|4902431_4903142_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.99221e-83
NC_010546.1\|WP_009543215.1\|4910900_4911977_-\|HindVP-family-restriction-endonuclease	gnl\|CDD\|370544	pfam09519, RE_HindVP, HindVP restriction endonuclease. This family includes the HindVP (recognizes GRCGYC bu the cleavage site is unknown) restriction endonucleases.	0
NC_010546.1\|WP_009543228.1\|4894868_4896443_-\|metallophosphoesterase	gnl\|CDD\|277324	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	0.000116239
NC_010546.1\|WP_009543222.1\|4903160_4904099_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176228	cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.58361e-142
NC_010546.1\|WP_009543229.1\|4894238_4894556_+\|DUF2973-domain-containing-protein	gnl\|CDD\|371413	pfam11189, DUF2973, Protein of unknown function (DUF2973). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.	4.12165e-36
NC_010546.1\|WP_009543225.1\|4901073_4901865_+\|MlaE-family-lipid-ABC-transporter-permease-subunit	gnl\|CDD\|215575	PLN03100, PLN03100, Permease subunit of ER-derived-lipid transporter; Provisional.	1.93443e-106
NC_010546.1\|WP_012362541.1\|4913201_4914092_-\|carotenoid-biosynthesis-protein	gnl\|CDD\|367884	pfam04240, Caroten_synth, Carotenoid biosynthesis protein. The representative member of this family is CruF, a C50 carotenoid 2',3'-hydratase involved in the synthesis of the C50 carotenoid bacterioruberin in the halophilic archaeon Haloarcula japonica.	8.3231e-92
NC_010546.1\|WP_009543230.1\|4893750_4894083_+\|DUF2605-domain-containing-protein	gnl\|CDD\|371248	pfam10792, DUF2605, Protein of unknown function (DUF2605). This family is conserved in Cyanobacteria. The function is not known.	6.10405e-57

>NC_010546.1|WP_009543222.1|4903160_4904099_-|NAD(P)-dependent-alcohol-dehydrogenase
MKSVIFNRYGSPDVLEYAEVTKPSPTAKQLLIKVIASSVNPIDWKIRRGMLQVVTGKKFPLSLGCDFSGEAVEVGEKVSDFQVSDQVYGFFSPGSGKAYGEYIVITPQNIAPKPTNLTHSQAAAVPLAASTALQGLRNKGKVKRGQTVLINGASGGVGTFAVQIAKAYQAAVTGVCSGKNIPLVTELGADYTIDYTQEDFTQQEKQYDIIFDIVGNYSFRKCQKSLNPEGIYVTLTPSLNFIINSVFAFFSRQQSKLLLVEPQPKDLAELKDLIEHQKVKPIIDCTYQLSDIMAAHTYSETGHVVGKIVLEV
>NC_010546.1|WP_009543223.1|4902431_4903142_-|MBL-fold-metallo-hydrolase
MLFRQLFDAESSTYTYLIADRTLKQALLVDPVLEQVERDRQLLNELGLTLKYCLETHIHADHITGTGKLREITECLGIVPENAQIACADRWMKDKEVLQLGNVIVEAIATPGHTDSHFAYLVNRKAILTGDALFIRGCGRTDFQSGDPGTLYDSVTQRLFTLPDETLVYPGHDYRGHTVSTIAEEKQYNPRFVGRTPQSGSLRDRSEFITFMTNLNLPNPKKMMEAVPANEQCGNV
>NC_010546.1|WP_009543224.1|4901881_4902385_-|DUF3122-domain-containing-protein
MSKQVFKFILVLGLMCLLLIQPAYAVIRESEIPPDIILYKSIQTWRDQSKNPWQLIFFKEIKGDNQPTINLRLVGFPDLFEFNHPQPLIIKIREDLTVQVPDVFTSDQEAFAPNMGQYNFKSIVDQLESNNFWLLELPLKDGELSRIKVPYFILEEWKKIIVQKASE
>NC_010546.1|WP_009543225.1|4901073_4901865_+|MlaE-family-lipid-ABC-transporter-permease-subunit
MTNPTHTRRGLGIWFERLVAAVLLGGQVFFHLLKTKIHRRNTLEQMSVVGPESVTIALITAGFVGMVFTIQVAREFISFGAASTVGGVLALALTRELAPVLTAVVVAGRVGSAFAAEIGTMRVTEQIDALYMLKTDPIDYLVVPRVLACCLMLPVLNILSLLTGMTGGLLIANGLYDISPYVFLTSVRNFLELWDLVTSMIKSVAFGGLIAVIGCSWGLTTTGGAKGVGQSTTTAVVTSLLAVFVINFFLSWVMFQGTGSSSF
>NC_010546.1|WP_009543226.1|4899817_4900867_-|D-alanine--D-alanine-ligase
MAKIRVGLLFGGRSGEHEVSINSAAAIAQALQTGDNANKYDILPIYIQKNGVWVAGDTANEVLDSKAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPANLGSSVGIAKVRSHSELETALDSAASYDRRIVIEAGVNARELECAVLGNDNPKASVIGEVTFEGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVEETEEIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFALEK
>NC_010546.1|WP_012362534.1|4896811_4899028_+|DUF839-domain-containing-protein
MVMKRRNLLKFLGVSTGTALLCQGTKGLSSPFRVAGQGNDTVTNIIKASHFLKFTPVKLPIPLTIENLNDEEQTSAYKSYEVVDDVVLPEGFTYDVIAQWGDKVGDSRFGYNNDYLSFIETKENEGFLTINFEYISGKTWKETYEKVIGKSLPFEDVKAIADQNGGTINGFELPQDDPLKAKIEAIAKEALIDQGIGVISLRKNEQGQWQRTYSEADRRITGLSGLEEGPYLKATGPGVKIFEKEKKLGYEDGLGSNIIGTFQNCAGGTTPWGTVLSAEENIQDQVPEPVMADGSSLDPSVTPFVFNEQYIDGRGNVFGLAGNKYGWMVEIDPTDKNDYGTKHTWLGRYRHEAVAFRAETGRKLAVYSGCDRRGGHLYKFVSDNNVTDPKDRKNSRLMESGMLYGAVFNSDGTGKWVALTSETPIDPVLPSTVQGGMVMLPNSDRQVGGMIKVTEDQNIITFKDKFKTLGDLYIGTPEEKQGAILIDAHFAGNAAGITCTARPEDTEIGEDGTLYVTFTSGTPGGDGGPDKGVFRGPDGEMNYEYGWVMKITEDKNDPAAMGFRWDILATGGEPAKGGMGFSNPDNLMFDNQGDLWMVTDMSTSGHNNEITDRVKDGEPVSTKSLVGIFGNNTLWYLPLHGDNKGMAFPFAIGPMEVEMTGPWLTEDQQTLFLAVQHPGEANGTRQNMTSEKREFSILTTSGNEFIQTRTVPLGSNWPGKQVNDPPRPAVIAIRPVKE
>NC_010546.1|WP_009543228.1|4894868_4896443_-|metallophosphoesterase
MQFVKDPSISVKINEMKQRVRWQESAIKERAIDQTKLLIKDSNSNNPDFSFLVIGDSGCGQHYDHHPQRQIAELMLKQSANFILHTGDVVYQVGSKEYYYKNFIKPYKEYLVGGESPKKIAYDELIFKLPFLPVPGNHDYYDLPLLYGVLSQLTWGVRHLLPITFDFDVGWHGSFKGQAYSKAFLDYLADIKSPHLLAKHLDKHYDVNSDGNRCLSYQPGHFTRLPNRYYTFSYGGIDFFALDSNTFNAPSPLPDTKTGELMRHSLVKRRKELETRKEKILTEIQSLNPQKIEEAELLDDKQGQINQIEEEQLDIDKRLDKHQFTIDFEQLHWLRDQLIKSWQNPEIRGRIIYLHHPPYVTEKTKWNQGQTLAVRHRLRYVFNEVAQTLGNIPQGSGIVDLVLSGHAHCLEHLYTENTQQADSFIHWLVCGGSGHSLRRQRSEGSILNETDEQGLQHQVARSLKFIGRNGHGSHKRRPYSFLKIEIKSGKPPTYLIHYHIAELYQHQWHHYQLEPKIIPILKSY
>NC_010546.1|WP_009543229.1|4894238_4894556_+|DUF2973-domain-containing-protein
MLHLIYIVAFTIIAFLAVSNLIRSLITVSMDSQRRYPNRNQTSSPKPQKRQNRQKAIHPELLDERGKPINEPLLVMRSVSVEDARQQLDAIYNASPNPNNETEDE
>NC_010546.1|WP_009543230.1|4893750_4894083_+|DUF2605-domain-containing-protein
MSHSNPTEQELLKTILEPLLEDFQYWFSRARHLLESERITFLSVEEQTDLLDRVKKNQQEVQTAKILFEATGKQAGIDTRALVPWHKLVAECWQVSMKWRSHKQENPPTA
>NC_010546.1|WP_009543231.1|4891723_4893433_+|GAF-domain-containing-protein
MEPLDSSSLGIALQKIIDQLGQLLKVDCCILRPFHAHCLIKNSIFYYPNKNQEELSLLEKTIIPIEYIEVITSTDNFLTLAQPKTLEETQRKNAYKLTKIGASLLIPLTLEQKFIAVLGLHRYCSFYHWQDQEIAITKMVVEQITLAISQAQAYQKLRALAQREALINRITNAIRCSLEPQLIFTAITQELGNGLKVDGCALSLWTKADKFVQCVGLYDHYQGSINPLPQSVVPIASNPVLQQLINTKKPVVLEDMDRHPEMTQFDLPLRESAQALLIVPLLVDSEIIGSISLRQTDHSRRWLSTEIELAKTVASQAAIAVQQARLYEKTKQQAEQLQKSEQEVKQLNQYLTESVLKRFLPASMVNKVAKGELSLDLTPEPRLVTILFTDLVGYTPLASHLGTQGVATLLNEYLEAMTAVVFHYGGTVDKFIGDAVVALFGAPEDLTPKKQVYQAIAVAREMHNQLDRLNERWQSQELIQQPVRFRCGIHQGMAVVGMFGGGQRSDYTAIGSAVNIAARLQEVADSGMILVSATVAQFLTASEVTALRPLELKGVEEDIKMFCVKISAV
>NC_010546.1|WP_009543221.1|4905035_4905428_-|hypothetical-protein
MLKKIIAPAIALTFAITTLTILGLNLTNLAQSHIEDKDYFIKVNRQANVAIVEPNYGYYFHPDPEVEGDPTGQVLYQALSELNQEYGVKEAMMVRFERKGYMIPNLYVFLKSNQPQQTLAESQSPDQLSM
>NC_010546.1|WP_009543220.1|4905643_4907083_-|TldD/PmbA-family-protein
MTSTLETWLKEIHLPADWIGLRQVTETSTLRYVRDGKPQSNGRSQSKGVMVEVLAKGQLGYCATNHLTLDNIKLAAEIAYQQAVTAAEWGIYSFTVEQRPKAVGTYYSPYLKPLDILSPKDINDLLLKVNETLKVNDKIVSTSAIARLVETEIQLVSSNGSDVYQKFLLITTDYTATAQDGNIIQKRTDNGLTARSYQGGMECLDETEVLTRAEKIAEQALELLSAEDCPTTTTTLVLAPDQMMLQIHESIGHPLELDRILGDERNYAGSSFVKLEDFGQLVYGSPLMNVTFDPSVSGQFASYRFDDGGNLATREYLIKEGILLRGLGSKESQIRSNVPGVANLRASSWNRPPIDRMANINLEPGNTSFDEMIANIESGVYMESNRSWSIDDYRNKFQFGCEYAKLIENGKLTKTLKNPNYRGITNQFWRSLSQLGDRSTLGMYGTPSCGKGEPNQAIRVGHASPVCAFDNIEVFGGVG
>NC_010546.1|WP_009543219.1|4907120_4907762_-|FHA-domain-containing-protein
MITCPNCEHQNPDGAIQCEACFTPLPQLVNCGNCGQPLLSNATFCGECGAANPFEGSTEAEAEPSPPPPPVTPPPPPIGNLPEASPTPPPPPTKPPASAPTQLQTQTASLLHLQTDTTLELPQGLDIIHVGKPNEQIPPDLDVSGLPNSDVVSRIHADIRNEAGIFYIEDVGSSNGTYINYNALPPGNRHRLRPGDRISLGKGDLVTFVFQLS
>NC_010546.1|WP_009543218.1|4907969_4908689_-|6-phosphogluconolactonase
MTQIQVLSDKPTLIAHTLNLIVDKIHTTLQQQEKFTLALAGGGTPKPLYEALAQQSLPLEKIHIFWGDERYVSAAHPDSNQRMAREAWLDQVDFPSSNIHPMPTGSNDPSVDAQTHDQELRDFFGVEAGEFPTFDIILLGMGDDGHTASLFPKTEALTVSDRLITVGNKDGQPRLTFTYPLLNHARCIIFLVAGENKRPALAQIFSPDGDETLYPAKAVQPQGELIWLLDEAAGAELNG
>NC_010546.1|WP_009543217.1|4908952_4909777_+|hypothetical-protein
MNYSAFTSLVLKLIGVIFILSSLLDYVTLAIPLNLENQSWQIGLVTNIVDRGVVPLVGIAFILVGYLIDGLADANPLKKSGFNLKLPVYILSALLGLMFLLMVPLHLNNLNSAKTDALERIQQGAGQGAEQIQQFLTQVDTLSRNPNQLNQQIQRLNQAIEAGQVQGRQLNAQQLETLRQQRQQLQGLRDLSQNPEEYKKRTEELKNQLETQLLERRKQAESQATTQALKQSLRIGLSSLMLAIVYSVIGWIGLKSEITSPKGPKAAPRPKVKR
>NC_010546.1|WP_009543216.1|4909896_4910856_-|DNA-cytosine-methyltransferase
MKVIDLFAGCGGLSLGFQNAGYTILAAYDNWEPVVKIYQKNFKHPIYKWDLSRYELYLEEFKSLNPDLIMGGPPCQDFSSAGKRDENLGRGDLTIAFSQIVTQILPKVFVLENVARFNKTNKYIEAKTILKQAGYGITEKVLDASLCGVPQKRKRFFWVGIYQEKDNTLIPYLKKNLSKKAMTVRDYLGDKLGIEYYYRHPRSYKRRGIFSIDEPSPTIRGVNRPIPKTYQKHPGDIVSLSSSVRPLTAQERSYLQTFPDTFIWEGSKTNLEQMIGNAVPVKLAEYVANAILDYFATSNMIQVQQLCLPILTYPLNSDK
>NC_010546.1|WP_009543215.1|4910900_4911977_-|HindVP-family-restriction-endonuclease
MSDNYQPRLFGINQSNRDFSKKSSWGKNQFNSSFPSALTCYMSYKNIQPVYLTLDHKLTVKHGKISVSSLFGLDYSSPHLFFAFERDYIPYQDIVIGNLPRIDLVTIDISKNNLCLRGLEIKLTALPDNTTCELSDDKYGSEIVVRPPTIVYLSISIARAYQQDRKILKDYLNPICNFITDWTSPSCILPIIDEIISVIDVVISSCLDSQIPLIMQPIWKTEGKSAQLHDNCLDIFMWSNLAFTRLFIDAAKLELNSEKITRHKRCVVWLAKMLYDFANTSKINHTVTIDEISLNTKNDKAFALSGSRTHKYMKSPELTNPRIKREEINNIILGGGEKLLSPERRFDAIILNTPNLFS
>NC_010546.1|WP_009543214.1|4911969_4913181_-|glycosyltransferase
MESSILLNDTVIGVISLSTLLFQGTATLILLSRLLKGAMRRPPLKPQLPDPEMLGKVSVVVPTLNEAERITPCLQGLGQQSYEVREIIVVDSHSQDGTQELVKTARLHDPRFRLITDGPLPSGWVGRPWALHNGFLHSSPRSEWVLGIDADTQPQRGLVASLVKVAEEEGYDIVSLSPQFILKDAGEWWLQPALLMTLLYRFDSAGVREQSPDRVMANGQCFLSRRSVLDALEGYSCAASSFCDDVTLARDAAKQGFKVGFLDGKNLIRVRMYEGVKETWNEWGRSLDLKDATSPPQVWGDLILLLLTQALPLFLLIVFVSFWLAGNHFLSLELAIALNLILVIIRFALLFAVFPSYYKDKSSLVKSLLFWLSPFADPLAVLRIFLSSLQTPKQWRGRTYSHE
>NC_010546.1|WP_012362541.1|4913201_4914092_-|carotenoid-biosynthesis-protein
MSTLMRVERTLVIGHIFSMAFGLAGLLLVLPNPDFIASLPPIGKTAFAWSMAGGGVMYMLLGMAAVTVYAYRTLGVWHWLGFMLPALAISLSSELLGTSTGFPFGHYRYLTGLGYKIAGLVPFTIPLSWFYLGFSAYLIARAGLNTKISQNWLKIVASIVLGAIFLTAWDFVLDPAMSQTTMPFWVWDQPGAFFGMPYQNFAGWFGTGAVFMTVATLIWKVKPFNFPQHNLGLPLAIYVSNFAFAMIMSLAAGIYIPVLLGLMVGLIPVLVLYRLADTPTEADIPENLAKVSFNNG
>NC_010546.1|WP_009543212.1|4914247_4914853_-|RDD-family-protein
MYSNQLPPTDQHFPKVPLDRRAYAFLLDFVTVWFLSSFFQGLVKDLVFFGVWLILRIIIVEKNKGQSLGSWAFDIKVIDIRFLRVPVLQDLAKREAILGFVAMLAMVGLNINFKNGLSMLIFITPLIIDCGVAIGDEEYNQAFHDRVGKTIVIQTKRGFSLDLRLKKLWKIIKAKIQSRQTKRQSYRDDYYDDYDDYNDQY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010546_10	10.2\|3921559\|24\|NC_010546\|PILER-CR	3921559-3921582	24	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	245107-245130	4	0.833
NC_010546_2	2.1\|359639\|34\|NC_010546\|CRT	359639-359672	34	MF288917	Bacillus phage PPIsBest, complete genome	145208-145241	9	0.735
NC_010546_4	4.1\|1203580\|33\|NC_010546\|CRISPRCasFinder	1203580-1203612	33	MN228696	Sinorhizobium phage ort11, complete genome	20061-20093	9	0.727
NC_010546_5	5.1\|1440030\|33\|NC_010546\|CRISPRCasFinder	1440030-1440062	33	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	369323-369355	9	0.727
NC_010546_4	4.5\|1203580\|34\|NC_010546\|CRT	1203580-1203613	34	MN228696	Sinorhizobium phage ort11, complete genome	20061-20094	10	0.706
NC_010546_2	2.4\|359639\|36\|NC_010546\|CRISPRCasFinder	359639-359674	36	MF288917	Bacillus phage PPIsBest, complete genome	145206-145241	11	0.694

1. spacer 10.2|3921559|24|NC_010546|PILER-CR matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 4, identity: 0.833

aatatacctcaaacaagcattacc	CRISPR spacer
ttaatacctaaaacaagcattacc	Protospacer
   ****** **************

2. spacer 2.1|359639|34|NC_010546|CRT matches to MF288917 (Bacillus phage PPIsBest, complete genome) position: , mismatch: 9, identity: 0.735

taacacacttgaaggtgttggtggtttatacgac	CRISPR spacer
tttaggtctagtaggtgttggtggtttatacgaa	Protospacer
*   .  ** * *********************

3. spacer 4.1|1203580|33|NC_010546|CRISPRCasFinder matches to MN228696 (Sinorhizobium phage ort11, complete genome) position: , mismatch: 9, identity: 0.727

gacaaaagctaagttcaaagatactcctgttag	CRISPR spacer
tgtggcagataacttcaaagatactcctgttat	Protospacer
 .... ** *** *******************

4. spacer 5.1|1440030|33|NC_010546|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 9, identity: 0.727

----cgaggtggctaggggataaaattgacctgttag	CRISPR spacer
tttctga----tctaggggataaacttgagctgttac	Protospacer
    .**     ************ **** ******

5. spacer 4.5|1203580|34|NC_010546|CRT matches to MN228696 (Sinorhizobium phage ort11, complete genome) position: , mismatch: 10, identity: 0.706

gacaaaagctaagttcaaagatactcctgttagt	CRISPR spacer
tgtggcagataacttcaaagatactcctgttatc	Protospacer
 .... ** *** ******************* .

6. spacer 2.4|359639|36|NC_010546|CRISPRCasFinder matches to MF288917 (Bacillus phage PPIsBest, complete genome) position: , mismatch: 11, identity: 0.694

taacacacttgaaggtgttggtggtttatacgacaa	CRISPR spacer
tttaggtctagtaggtgttggtggtttatacgaatc	Protospacer
*   .  ** * *********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2514324 : 2560089

Cafeteria_roenbergensis_virus(25.0%)

protease,transposase,tRNA,integrase

attL 2516876:2516935|attR 2558959:2560159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009544848.1\|2514324_2515887_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_009544847.1\|2515995_2516811_+	hypothetical protein	NA	NA	NA	NA
2516876:2516935	attL	NA	NA	NA	NA
WP_009544806.1\|2516961_2517429_-\|transposase	transposase	NA	NA	NA	NA
WP_009544805.1\|2517466_2518006_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_009544846.1\|2518173_2520078_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_009544845.1\|2520207_2520618_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_009544844.1\|2520617_2520860_-	hypothetical protein	NA	NA	NA	NA
WP_009544843.1\|2521073_2522669_-	Hsp70 family protein	E3T5H4	Cafeteria_roenbergensis_virus	1.3e-20	26.7
WP_009544842.1\|2522825_2523797_-	solanesyl diphosphate synthase	NA	NA	NA	NA
WP_009544841.1\|2524579_2525425_-	glutamate racemase	NA	NA	NA	NA
WP_009544840.1\|2525511_2527359_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	9.9e-28	41.1
WP_024750314.1\|2527527_2528919_-	cation:proton antiporter	NA	NA	NA	NA
WP_009544838.1\|2529167_2529812_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_009544837.1\|2530485_2531688_-	hypothetical protein	NA	NA	NA	NA
WP_009544836.1\|2531828_2532605_-	fasciclin domain-containing protein	NA	NA	NA	NA
WP_009544835.1\|2532769_2533069_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_009544834.1\|2533096_2533894_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_009544833.1\|2533933_2534752_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_009544832.1\|2534899_2535559_-\|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	NA	NA	NA	NA
WP_009544831.1\|2535727_2536882_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_009544830.1\|2536922_2537459_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_009544829.1\|2537450_2538326_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009544828.1\|2538334_2538553_-	hypothetical protein	NA	NA	NA	NA
WP_009544827.1\|2538593_2539460_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009544826.1\|2539811_2540213_-	DUF2809 domain-containing protein	NA	NA	NA	NA
WP_009544825.1\|2540216_2540954_-	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_009544824.1\|2541051_2542107_-	photosystem II D2 protein (photosystem q(a) protein)	A0A1D8KQ83	Synechococcus_phage	1.7e-189	88.9
WP_009544823.1\|2542536_2543511_-	glycosyltransferase	NA	NA	NA	NA
WP_009544822.1\|2543534_2544755_-	hypothetical protein	NA	NA	NA	NA
WP_009544821.1\|2544769_2546281_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	7.2e-109	49.4
WP_012361895.1\|2546603_2548256_+	hypothetical protein	NA	NA	NA	NA
WP_009544819.1\|2548268_2548970_-	hypothetical protein	NA	NA	NA	NA
WP_009544818.1\|2549108_2549408_+	hypothetical protein	NA	NA	NA	NA
WP_009544817.1\|2549431_2550457_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_009544816.1\|2550545_2550731_-	DNA repair protein RadC	NA	NA	NA	NA
WP_009544815.1\|2550820_2552272_-	cation:proton antiporter	NA	NA	NA	NA
WP_009544814.1\|2552517_2553246_-	DNA repair protein RadC	NA	NA	NA	NA
WP_009544813.1\|2553328_2553502_-	metallothionein	NA	NA	NA	NA
WP_009544812.1\|2553641_2554043_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_009544811.1\|2554153_2554966_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_009544810.1\|2554998_2556660_+	MFS transporter	NA	NA	NA	NA
WP_009544809.1\|2556695_2557712_-	adenosyl-hopene transferase HpnH	NA	NA	NA	NA
WP_009544808.1\|2557971_2558601_+	DUF3177 family protein	NA	NA	NA	NA
WP_009544807.1\|2558705_2558888_+	CsbD family protein	NA	NA	NA	NA
WP_009544806.1\|2559044_2559512_-\|transposase	transposase	NA	NA	NA	NA
WP_009544805.1\|2559549_2560089_-\|transposase	transposase family protein	NA	NA	NA	NA
2558959:2560159	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010547

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010546

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection