CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009828	Pseudothermotoga lettingae TMO, complete sequence	2 crisprs	cas5,csm3gr7,cas3,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,cmr4gr7,cmr5gr11,cmr3gr5,cmr1gr7,cmr6gr7,cas10,csa3,WYL,cas14k	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009828_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009828_1

205528-208415

TypeI-B

III-A

Consensus_repeat	Method
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	PILER-CR
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CRISPRCasFinder
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CRT

43 spacers

cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6

The CRISPR arrays of NC_009828_1

>merge|NC_009828|1|205528-208415|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATCCCTCTAAGGTTCGATTGAAACCTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTAGTTTCCATCCCTCTAAGGTTCGATTGAAACTCGCCTTGCATACACTGGGACGGATTGGAAAACTTTGTTTCCATCCCTCTAAGGTTCGATTGAAACCAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGTGTTTCCATCCCTCTAAGGTTCGATTGAAACAAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCATGTTTCCATCCCTCTAAGGTTCGATTGAAACGTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTTGTTTCCATCCCTCTAAGGTTCGATTGAAACTAGTGGTATCAAAATTTGTTTATATCACCCAGACAGGTTTCCATCCCTCTAAGGTTCGATTGAAACGGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATAGTTTCCATCCCTCTAAGGTTCGATTGAAACTGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACAGTTTCCATCCCTCTAAGGTTCGATTGAAACCACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGATGTTTCCATCCCTCTAAGGTTCGATTGAAACTCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGTGTTTCCATCCCTCTAAGGTTCGATTGAAACCTGATATGAGCATTGCTATTCCCAACACAACCACAAGTTTCCATCCCTCTAAGGTTCGATTGAAACAACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCCGTTTCCATCCCTCTAAGGTTCGATTGAAACTTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGGGTTTCCATCCCTCTAAGGTTCGATTGAAACTGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCCGTTTCCATCCCTCTAAGGTTCGATTGAAACCAGTATAACCAAGTGCTGAATCATACCCACCAGCATGTTTCCATCCCTCTAAGGTTCGATTGAAACATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTTGTTTCCATCCCTCTAAGGTTCGATTGAAACAGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAAGTTTCCATCCCTCTAAGGTTCGATTGAAACATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCTGTTTCCATCCCTCTAAGGTTCGATTGAAACAGAAGAAAACCATACGATGACAAAAAGATCGATGCACGTTTCCATCCCTCTAAGGTTCGATTGAAACGATGCTGACAAACATCTATACATAACAGTAGCCGAGGTTTCCATCCCTCTAAGGTTCGATTGAAACCGCTTCTTCTTCAAAACATGTCTCAACAATTTGCTGTTTCCATCCCTCTAAGGTTCGATTGAAACTTAACAATATCATCCGAGCTAAATATTCCGAATACTGTTTCCATCCCTCTAAGGTTCGATTGAAACGGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGAGTTTCCATCCCTCTAAGGTTCGATTGAAACTCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTTGTTTCCATCCCTCTAAGGTTCGATTGAAACGGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTGGTTTCCATCCCTCTAAGGTTCGATTGAAACCAACTTGATTCAATTGAGATGATCGCGAACACGTCCGTTTCCATCCCTCTAAGGTTCGATTGAAACTGTTACATTTGCATATGGTAGTTATTGGGACTTTGGTGTTTCCATCCCTCTAAGGTTCGATTGAAACCGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCTGTTTCCATCCCTCTAAGGTTCGATTGAAACTGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTTGTTTCCATCCCTCTAAGGTTCGATTGAAACTTCCACTATATCCTTCAATTCATTCAAATCATCGATGGTTTCCATCCCTCTAAGGTTCGATTGAAACAAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACTGTTTCCATCCCTCTAAGGTTCGATTGAAACGGATTTTCGCTATTGGATAGTTTGACTCCAGAACAGGTTTCCATCCCTCTAAGGTTCGATTGAAACTTGGATATTTGAATGAAGTATCGCTAATATTTGGAAGTTTCCATCCCTCTAAGGTTCGATTGAAACTAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTGGTTTCCATCCCTCTAAGGTTCGATTGAAACGACTTCGATTGTGAAATTCACACCATTAATGGGTTGTTTCCATCCCTCTAAGGTTCGATTGAAACCAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGCGTTTCCATCCCTCTAAGGTTCGATTGAAACTTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCTGTTTCCATCCCTCTAAGGTTCGATTGAAACCCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGATGTTTCCATCCCTCTAAGGTTCGATTGAAACCGTTCTACTCAGGCTATCGCGATCTTGCACAATCTTGTTTCCATCCCTCTAAGGTTCGATTGAAACGCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCTGTTTCCATCCCTCTAAGGTTCGATTGAAACTCAGAAATTTCATCAGCAAGAGCATCAATAGACGTTGTTTCCATCCCTCTAAGGTTCGATTGAAACTCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTGGTTTCCATCCCTCTAAGGTTCGATTGAAACTTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTGGTTTCCATCCCTCTAAGGTTCGATTGAAAC

>NC_009828|1|1|205528-208415|PILER-CR
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCCTTGCATACACTGGGACGGATTGGAAAACTTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGTGGTATCAAAATTTGTTTATATCACCCAGACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTGATATGAGCATTGCTATTCCCAACACAACCACAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTATAACCAAGTGCTGAATCATACCCACCAGCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGAAGAAAACCATACGATGACAAAAAGATCGATGCAC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GATGCTGACAAACATCTATACATAACAGTAGCCGAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCTTCTTCTTCAAAACATGTCTCAACAATTTGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTAACAATATCATCCGAGCTAAATATTCCGAATACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAACTTGATTCAATTGAGATGATCGCGAACACGTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTTACATTTGCATATGGTAGTTATTGGGACTTTGGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCACTATATCCTTCAATTCATTCAAATCATCGATG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGATTTTCGCTATTGGATAGTTTGACTCCAGAACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGGATATTTGAATGAAGTATCGCTAATATTTGGAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GACTTCGATTGTGAAATTCACACCATTAATGGGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGTTCTACTCAGGCTATCGCGATCTTGCACAATCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCAGAAATTTCATCAGCAAGAGCATCAATAGACGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC

>NC_009828|1|1|205528-208415|CRISPRCasFinder
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCCTTGCATACACTGGGACGGATTGGAAAACTTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGTGGTATCAAAATTTGTTTATATCACCCAGACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTGATATGAGCATTGCTATTCCCAACACAACCACAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTATAACCAAGTGCTGAATCATACCCACCAGCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGAAGAAAACCATACGATGACAAAAAGATCGATGCAC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GATGCTGACAAACATCTATACATAACAGTAGCCGAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCTTCTTCTTCAAAACATGTCTCAACAATTTGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTAACAATATCATCCGAGCTAAATATTCCGAATACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAACTTGATTCAATTGAGATGATCGCGAACACGTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTTACATTTGCATATGGTAGTTATTGGGACTTTGGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCACTATATCCTTCAATTCATTCAAATCATCGATG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGATTTTCGCTATTGGATAGTTTGACTCCAGAACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGGATATTTGAATGAAGTATCGCTAATATTTGGAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GACTTCGATTGTGAAATTCACACCATTAATGGGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGTTCTACTCAGGCTATCGCGATCTTGCACAATCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCAGAAATTTCATCAGCAAGAGCATCAATAGACGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC

>NC_009828|1|1|205528-208415|CRT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTTGACTATCTCATCTGCGTTCGGTATACCTGGAGTTA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCCTTGCATACACTGGGACGGATTGGAAAACTTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTTCAGAAGCTTCAAGAGCAATATCAAACTGCTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGATTTGAAAAAGTTGAGGGATGGTATTGTGTTCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GTTTCCGTATTTGTTTGTGTCTGTGTCTGGACTTGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGTGGTATCAAAATTTGTTTATATCACCCAGACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGGATAACTCAATAAATTTTGAGGAGGTTTTCATA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTGGTGGTATAGTGTGGTTAGACGGGAAGGTATACA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CACGCAAGAAGCCTTTGTGTCCTTCGTTGCTGCGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCATAAGATGTTGGTGTGCTTATCTCATTGAGTATTGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CTGATATGAGCATTGCTATTCCCAACACAACCACAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AACTGCAAAATCTGGGAGAATTAAATTGTTTTCTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGTGCTTCTTAAGAATCTCCCTGGCCTGCTCTGGGG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGAAAGAACAAAGAGAATATTTAGCTGAAAAATATCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAGTATAACCAAGTGCTGAATCATACCCACCAGCAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATAATCTGCGAGAACTTCCTAAGCTTTTTCCTAAGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGGTTAAGCACAAATTTGGTTCCAAACGAGGTGCAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	ATTGCCTGCTCAAAGGCTTCGTGCGGGCTCATCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AGAAGAAAACCATACGATGACAAAAAGATCGATGCAC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GATGCTGACAAACATCTATACATAACAGTAGCCGAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCTTCTTCTTCAAAACATGTCTCAACAATTTGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTAACAATATCATCCGAGCTAAATATTCCGAATACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGCGACTTACTTCGTTCTGCTTGGAGACATTCTCGA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCCGTAAGCTGTCGCGAATTCGTTGTAGTATGCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGGAATCGTAGTGCTTGTGTTGCACCATTATATGTGTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAACTTGATTCAATTGAGATGATCGCGAACACGTCC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTTACATTTGCATATGGTAGTTATTGGGACTTTGGT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGCCTGCTGAAGTGTCTCATATTTTTGCTGTAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TGTCGTTGAGGCCTCGAATTTGAACAGAACACCGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCACTATATCCTTCAATTCATTCAAATCATCGATG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	AAGCGTTTGAATTTTTGAATCCAGATCTTGGAGACT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GGATTTTCGCTATTGGATAGTTTGACTCCAGAACAG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTGGATATTTGAATGAAGTATCGCTAATATTTGGAA
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TAGACGCGTCCCAAGCAATGGACTTTCTCCAACTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GACTTCGATTGTGAAATTCACACCATTAATGGGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CAAAAGAGGGAAAAACTGGATGGCAGTAATTACAGC
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCAATCACCAGGCGGAATTAACTTCCGAGGAAGCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CCGGCATTGGCCTTTTGGCAAGTGTATACGAAAGGAT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	CGTTCTACTCAGGCTATCGCGATCTTGCACAATCTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	GCCGTTGGAGCAACGATACCGATACTTTGAGCAAGCTCT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCAGAAATTTCATCAGCAAGAGCATCAATAGACGTT
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TCGCTTGATATTGCTCTTGATATTGATCTTGTGTTTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	TTCCAAATGCGATCGTGAGTGCTCCAATTGTTGCTG
GTTTCCATCCCTCTAAGGTTCGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009828.1\|WP_012002262.1\|217128_218934_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_009828.1\|WP_012002254.1\|208842_211077_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_009828.1\|WP_012002255.1\|211061_211754_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_009828.1\|WP_041428505.1\|193556_194066_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179774
NC_009828.1\|WP_012002250.1\|200997_201987_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_009828.1\|WP_012002260.1\|215621_216113_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009828.1\|WP_012002251.1\|201995_202844_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_009828.1\|WP_012002261.1\|216129_216891_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_009828.1\|WP_012002263.1\|218926_220660_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_009828.1\|WP_012002246.1\|195291_197460_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NC_009828.1\|WP_049753321.1\|194070_195021_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225971
NC_009828.1\|WP_012002258.1\|214357_214621_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009828.1\|WP_012002252.1\|202846_203764_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_009828.1\|WP_012002249.1\|200035_201010_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_009828.1\|WP_012002247.1\|197478_198897_-\|phosphoglucomutase/phosphomannomutase-family-protein	unknown	unknown	gnl\|CDD\|100093
NC_009828.1\|WP_012002259.1\|214627_215611_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_009828.1\|WP_012002256.1\|211750_212635_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|274217
NC_009828.1\|WP_012002248.1\|198886_199939_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226012
NC_009828.1\|WP_012002253.1\|203816_205367_-\|glutathione-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173864
NC_009828.1\|WP_012002257.1\|212618_214346_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	gnl\|CDD\|187861

Protein	Function_ID	Function_description	E-value
NC_009828.1\|WP_012002262.1\|217128_218934_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_009828.1\|WP_012002254.1\|208842_211077_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.12212e-42
NC_009828.1\|WP_012002255.1\|211061_211754_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	3.04675e-35
NC_009828.1\|WP_041428505.1\|193556_194066_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|179774	PRK04190, PRK04190, glucose-6-phosphate isomerase; Provisional.	9.51434e-64
NC_009828.1\|WP_012002250.1\|200997_201987_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.03323e-173
NC_009828.1\|WP_012002260.1\|215621_216113_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.08897e-55
NC_009828.1\|WP_012002251.1\|201995_202844_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.80845e-104
NC_009828.1\|WP_012002261.1\|216129_216891_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.46593e-57
NC_009828.1\|WP_012002263.1\|218926_220660_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.99159e-169
NC_009828.1\|WP_012002246.1\|195291_197460_-\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NC_009828.1\|WP_049753321.1\|194070_195021_-\|HD-domain-containing-protein	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	3.0532e-50
NC_009828.1\|WP_012002258.1\|214357_214621_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.79825e-29
NC_009828.1\|WP_012002252.1\|202846_203764_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.13677e-126
NC_009828.1\|WP_012002249.1\|200035_201010_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	6.7902e-130
NC_009828.1\|WP_012002247.1\|197478_198897_-\|phosphoglucomutase/phosphomannomutase-family-protein	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
NC_009828.1\|WP_012002259.1\|214627_215611_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.58089e-164
NC_009828.1\|WP_012002256.1\|211750_212635_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|274217	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.	1.00133e-107
NC_009828.1\|WP_012002248.1\|198886_199939_-\|HD-domain-containing-protein	gnl\|CDD\|226012	COG3481, COG3481, Predicted HD-superfamily hydrolase [General function prediction only].	1.01142e-41
NC_009828.1\|WP_012002253.1\|203816_205367_-\|glutathione-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_009828.1\|WP_012002257.1\|212618_214346_-\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	1.21453e-150

>NC_009828.1|WP_012002253.1|203816_205367_-|glutathione-ABC-transporter-substrate-binding-protein
MRKTVSWCILLLFTSFFAANLGGTLRFLIGVDITTLLGPNIPDSVSNIVASHIFEGLIDVDENLKIIPSLAERWEIQENGTAYVFFLRKGVKFHDGEIFNAYAVKKHFDYVLGSSLRNVGMFKGIIKEVQVVDDYTVKIILFRPYPPILYRLATSSAAWIISPKAIDEFGSDPALFGKNPIGTGPFMFKSWKAGEKVELVKNPNYWREGLPYLDSLVFSIVSEDISRVTQVRAGDADVMYNPPPALVPALEKDPKLNVITIPTVRVIYIGLNSLVPPLNDVRVRQALNYAVDKEKLCSIIMRGMARPSDSPLSSITYGYTSTGGYPYNPQKARQLLKEAGYENLKLELITPKGRYLNDYETAVAIQGMLSEVGIDLDVKPMEWGTYVAKILSNKPEDWDYQMFLLGWAPGTAEGHWVLFPLFHSVNQMGNPEGTARYNNFFYRNPEVDDLIDKIGKELNEEKLMEYYAEAQKIILQDAPWLFLYEMKIATVSRKEIRGLKIYPTERFNMTYAWIEK
>NC_009828.1|WP_012002252.1|202846_203764_-|ABC-transporter-permease
MIKFVSRRLLLLIPVIIGVSLISFSIMHMIPGDPARIIAGEGATKEDIEVIRTKYGLDKPLIEQYIRFMRGVLINDLRSIKTEKPIFGEILPRFSNTVQLAAVSIVISSLAGIFLGIISAVKRNTWVDNFAMIFSLTGVSMPIFWLGILLIIIFSVVLKWLPSGGKGGIQHIILPAITLGLATSAVIARMTRASMLEVLNQDYVRTARAFGLPERKIVYKYTLKNALVPVITVIGLQFGYLLGGAVLTESVFGWPGLGKYIVDSIFSRDYIAVQVGIMIIAVSFVLVNLIVDILYVFVDPRLRRG
>NC_009828.1|WP_012002251.1|201995_202844_-|ABC-transporter-permease
MPKKSSLVMFKRISKNKGALFGMFIVILMITVSIIAPLIAPYDPYKQDLLSSLQRPSLKHVFGTDIFGRDVLSRVIYGARTSISISFFAVLIAIFIGTTAGTFAGYFGGTIDEVLMRFLDILMAFPDILLAIAIVAALGPGKSNLIMAIAIYSFPQFARVMRASVLSVKNSEYVEAAKAIGESNISIMIRYVVPNAITPIIIQATLRMATAVLTISGLSFLGLGVKPPEAEWGTDLAMARVYIEIAPHLGIFPGLALFLTVMGFNLFGDGLNDALNPRLKDR
>NC_009828.1|WP_012002250.1|200997_201987_-|ABC-transporter-ATP-binding-protein
MNELLKIENLKLYFNTEEGVVKAIEDVNLTINTGEIVGIVGETGSGKSVTAMSILKLIPSPPARYLNGEIWFDGQKIDNLSEEAMSNIRGKKIAMIFQEPMTSLNPTFTIGEQICDVIMAHMQIRKEEAFKKAIETFKLVKMQDPESLMIKYPHQLSGGMRQRVMIAMALVCNPKLLIADEATTALDVTIQAQILGLLKKMNKELGLSILIITHSLGIVAQICDRVVVMYSGYTVESGNVYEIFNRPLHPYTRGLLNAIPSVENKLETLKAIEGTVPDLIDPPVGCRFHPRCGRVIKGLCDEHVPELTGFDHKVACFNPYDGGDENWRS
>NC_009828.1|WP_012002249.1|200035_201010_-|ABC-transporter-ATP-binding-protein
MEILKVEKLVKTFSVKKGFFGKYFQIKPLDEVSFSLREGETLGVVGESGCGKTTLGRTVIKLQKPDGGKIFFDGNDVTDIPEKDFQKYRRNIQIVFQDPFSSLNPRMTVYETLARPIRIHKTVPKSEEKKTIVRTLESVGLKKEHMNRFPHEFSGGQRQRIAIARAIITRPKFIVLDEPTSALDVSVQAQIINLLKKLKKDLKLTYMFISHDLSVIKFLSDRVAVMYLGQIVEMGKTDLVINNMLHPYTELLFNSVPIPDPAKKMNFELDASEVPSLINSPAGCPFFDRCHLRLKECNRLRPKLEEVEKDHLVACFLYHKTVHR
>NC_009828.1|WP_012002248.1|198886_199939_-|HD-domain-containing-protein
MKLGDRIPKEIFNELKPSKEPDFPYLEDLGSKVNENVQVIAKVTSRKLQEARDQKKFLLMTLSDKTGSIRAIDWYNADENFLKINDGDVVVARGRIVYFEDHIQLNLEKSADSIKNLNDSEYDFRRFLEVTSRDIDKMYEKLIVFVKEISDSDLKKLLEKIFIEDTEFVKLFVQCPAGVSVHHAYIGGLLEHTVDVVSSCKKIWQVYDSMLNKDLLLAGAMIHDIGKVREYRVTQKGFEVTTEGELKGHIVLGVEAIREVAYKIGLTGSKLLHLEHIILSHHGEIEWGSPVVPKTAEAFVIHSLENMDAKLARFRYLQEKGKKNGNEKIWTDYDRHLQRRLWLGGQENED
>NC_009828.1|WP_012002247.1|197478_198897_-|phosphoglucomutase/phosphomannomutase-family-protein
MKIKFGTSGWRAIMGDQFTFSNVKIVTQAIAEYLKKNGGRKVIVARDTRFMTENYAQLVAEVLAANGIKVLMPENPTPTPVVSYAIRHYKLDGGINITASHNPPEYCGIKFNPSDGSPAPTEVTSEIEKLIEKIDERKIPLMNLREASSKDLFEIIDPKPDYFKALSELIDIERIKSAGLRVIADLLYGSSIGYLDDLCQTICSDLDVVHNYRNPYFGGGRPEPDETRLSEFSSRIKNLNWDVLISTDGDADRFGILDNNGEFVKPNEIIALLAYHLYKNKGKIGPVARTIATSHAVDAVAHTFKQKVLETPVGFKFLATVLMSENAVIAGEESGGLSIANHVPEKDGILACLLVLEMIAYEKKSLSEIRKQFEKEYGKFNNTRIDIDFQSDEEKKQFLDKFKNIEDYLVNLKIVDEDSVDGMRYFFDKDGSWLLVRPSGTEPIVRIYLESRDLQTLQTMLSAVRKISRYAE
>NC_009828.1|WP_012002246.1|195291_197460_-|type-I-DNA-topoisomerase
MANKIIIVESPAKAKTIKEILKGEYDVLSSKGHVRDLPEKEFGVNIEKDFEPTFKIIYGKEKIVQELKKKAKNKQVLLGSDMDREGEAIAWHLADILGVANEKNRIIFNEITPQAIKNAVKEPRNIDMNKVHAQLARRILDRIVGYKISPLLWKMLKTSSSAGRVQSAALKIVCEREIQRHKFQPKKFWKVQGYIGSLKFYLTHIDGKKIDMQQIDEKLAKEIEKNVKVLKVIQIKTRKIQKKAPSPFITSTLQQEAANKLGFSVKKTMQIAQQLYEGIDTPKGHRAFITYMRTDSTRVSEIAKQKAIEFITDKFGKNYLGKKVRTEKAKQNVQDAHEAIRPVNIDLTPDQVEGDLGKDQYRLYKLIWERFMASQMADAIYEETTIQFQSDRYTFESKIERRIFDGFEIILKKDKEQEITIPSGEIRISKWQIEEDETKPPARYTEASMVRALEIRGIGRPSTYATIISTLLERKYVIKSSNQLIPTVMGFVVNHYLEKKFPEIVDLQFTAKMEEALDKIEQGQKDYKELLRDFYNDFSKYLDEAQQKWLSIDMNTNLECDCKSKYKLKVGRYGLYLLCENCSKTTSLALETPAVFYENTMYFTHQEKESIETVCPVCGGKLEQMSGRYGNYIKCQNCGKTYTGFARGKCPKCSAVVEKKISKNKRIFFKCTSDNCDFISWLEPSNETCPECSQRLYYKKYRSKEVLYCQNCKKTFQLKTKK
>NC_009828.1|WP_049753321.1|194070_195021_-|HD-domain-containing-protein
MKYKTLLLSSNPEKYVSFQISDQTPFEITMDFEVAWRLINRNLHSYANIVLDAKSFPAEVIKDFVSSLRKEIACVYPIVTIIAPNSAEKEFMSCGADKVVENFSRFDLSLPVSMCDLEKLSPMAFIEFLIQTIKLKDKMLFDHLINVKTYTTVLAKLCLERGLITDKELEFLSIASFFHDIGKLFIPDAVIRKPGKLTNEEFDIIKMHTLHGASLFEKILRYEPKNQLVYTSFFVAKYHHEKFDGSGYPCKLKGEEIPLSARIVAIADVFDALTTDRYYRSAYSPSEAIDIMKSCANHFDPEIFNIFLNNIDYFIK
>NC_009828.1|WP_041428505.1|193556_194066_+|glucose-6-phosphate-isomerase
MNLDNINFNGNHIVRRYEDIKSIFKSTDISLEGKNPVIYEVFESPVPEQQGHLIFLVTILYPGKVNEEFFMTKGHYHTVENTAEVYLGIKGKGLILCQTKSGDFEVAEISENRVVYIPPFWAHRAVNIFDEPLIFFGIYPAHAGHDYETIAQSGFVKRVFSKNGRVVIE
>NC_009828.1|WP_012002254.1|208842_211077_-|CRISPR-associated-helicase/endonuclease-Cas3
MLDGLKSHPERLLLDHINGVKKRALEKANSIKWNNFGITEKDAIKLIEICALCHDFAKASSGFQKYITSSKKGVHVSHAPLSSIITYHIAKNTGFEPKYASFAYFVVRCHHESMKDFQAFGENLEALEKQMSSIPKEFIDWVESKLNTQVTPKISEIYGKLEKDVAKLNFFRPFSLKDYLFVHTLLSILVSSDHEDAALHDTPLILKTRLTLENLRKYMHAIPEDNPLYSLRKEFHIDLDNSLKYLDDSKIYSITAPTGLGKTLANLKVALSLSDESLIVYALPFINIIDQTVETFQKIMQDTEFDASTILPYHHLANPKYEEDIYGEKAIQKVLIESWHSQIVVTTFVGLFESLLTSKRVPFFYKLLNATIILDEVQSIPHKYWNPLADILSCLSEFGTKIIFSTATQPMIITKTRELINKNYNSKLNRTRIHYCGEIDYPSFMKQVEEEANKCLEKNQRLLVVVNTIRQSKELFNHLRSTIDISKLVYLSSNVIPKQRLERVSGLKKLKNQGIICISTQVIEAGVDLSFNKIIRDEGPIDSVIQVAGRCNRNFETPISSAHIYRVIDKERNRSFSSYVYDHFLLDMTRELLSSKKEFEEKEFPEIVSRYFNMVKERGNTDRENLTEQLRLLKFEEISSKFKLIEKRYDTVPVFIEYDEYAQFLRKKLNETLNSKMEKFEKLAQISELIRQMSLYTIDVPLKSEDLRGALLIENGFLVVTKDNLNYWYDEYTGFQRSQELMIF
>NC_009828.1|WP_012002255.1|211061_211754_-|type-I-B-CRISPR-associated-protein-Cas5
MKVIVFDVKGKYALFRRNYTTSSSTSYNFPPRTSICGLLGAIMGIQNEATQFSKHLRIFDNAHIALRVLVPIRKTTMGVNYAETKSGKNQRTQIILELIKEPVYRIYVSEFSQFDQLRNHLENNTCVFTPYLGQAQFIAKISHVGVFEAKSVFPPVVVHSVLKITDGIRIQPQENSILLREQMVLNMDDERHPVAFASYWVEKNARPLEVIKHPNIFRIEELDENICWMD
>NC_009828.1|WP_012002256.1|211750_212635_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MNSRSEILFLYDVKWANPNGDPLDENKPRIDEETEKCIVSDVRLKRTIRDELQENGEIIWVSGESVNPDKRRGELGIKDKTDALKCIDVRLFGAVIPISKQADTSFTGPVQFRPGTSLHAVKVVFQQGTAAFTSGEQAQQRSFREEYLIPYALICFYGIANENAAKITKLTEEDIKKLLNAMWNGTKNLITRSKMEHNPRLLLRVVYKEGINYHIGELDSYIKLLSDIEEKSIRDTAQIKLDISELLTKLSQNKEKIDHIEYKEDGRLKLVKNGEDIILKNELDNLGLRAVALQ
>NC_009828.1|WP_012002257.1|212618_214346_-|TIGR02556-family-CRISPR-associated-protein
MLTKIIKIGKLYQQEELFENFAKTFKSNLLVALYFDLGPPVQYISSHIIEPPENLQKLLYYDQKGNVSGKSPTVSITFKNEDGSEKIRKGVEKAILKLKSFFKHPMLKDFENCINDEFESIVLDVEKLLTDQKNLKGVYLTVKLLRHDSELFPSEHGEFVKAFIDNILKKSVEGGEEGICTFCGRKKIVSATVNEVFKFATFDKPGFCPSLKKDDSIKVLPICDECKSQLQNGANKVIQELSFNFLKNQNPLWVIPSIIEENSEEILKNVIQRIADTSKKLKDFANSEREIELVLSEEKSTVHYDFLFMELNQNQQRIELHLTEISPTRLKKIVQSIDDSKRRIKIDDLPEPSLGMLWKLYEKPSGSDKSRKDYLALVKSIFQEEPYSYSRLLWYFMRKIRKSAITEGAWWRKLTYVSFAAILHLNQINVLNLRRGEYIVSSSEIDQFFNSYPEFFNLPWKKAVFLTGVLAGKVLSVQYAKRQATPFFKKFKGLKMNMQDVMGLLADIRNKLQQYDAYGKKSDELLKTAAEYYLQSSKSNTTIDELNFIFTLGLAYAGKEPFKKYEEVEEYEQQI
>NC_009828.1|WP_012002258.1|214357_214621_-|CRISPR-associated-endonuclease-Cas2
MYLIVTYDVGEKRVARVLKVCRKYLNWVQNSVLEGEITIAKFEKLKLELERSIDKSEDSVRIYILKNKSFFDLKTLGNEKGTVDIIY
>NC_009828.1|WP_012002259.1|214627_215611_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MAEPVYIFSDGTLKRKENTIMLETQSGKKHIPVENVSEIKIFGEVDINKRLLEFLTQKNIIVHFFNRYGYYVGSYYPREFLNSGMIILRQAEFYLNSVKRLELARLFVEGSLKNIINTIKKYNENGRFSNTINAIESHIKNLKQCISVEQLMALEGNAREIYYHCFDNFVKSGDFHFEDRSKRPPQNELNALVSFGNSLLYTTTLSEIYKTHLDPRIGFLHTTNDRRFTLNLDISEIFKPIIVDRLIFTLINRKQIKKSDFHEITGGISLKENARRTFVQSFEEKLKDTIYHSGLKRKVSFRTLIRTEAYKIEKHILEDEPYSPYLG
>NC_009828.1|WP_012002260.1|215621_216113_-|CRISPR-associated-protein-Cas4
MITGTVLLSFTVCEREAWLIAHQIEPEQSNPFIEIGRLIHTESYRKNQIREIALPGIKIDMIYSQGQVTVVGEIKKSSKFLKGARLQLLYYLSELKKRGVHAAGKIMIPKEKKQIDINLDDQGIKDLNQAIENVEKLISLPKIPQKIRNAFCTKCGYEQFCWS
>NC_009828.1|WP_012002261.1|216129_216891_-|CRISPR-associated-endoribonuclease-Cas6
MRLEIVFKTANSFIPINYQYMLCSFVYKRLKYTDENFASFLHEEGFNGFRMFTFSQLFFENSHVKNGSIIISEGKGKWYISSLSEDFIRNFFSSIIENPFIELEGVLFNILQVRVLDEPKITDQMKFILISPLVVSIPVENQGKLSHKYLTPEDDFFQNAINANLIKKYSAFFGKEISSKVYIQPDWNYIQRKGRITKLIQIKNTFVRGTVFPFLITGDPGLIKVGYEAGFGEKNSLGFGMVKVCRNDNNLNF
>NC_009828.1|WP_012002262.1|217128_218934_-|ABC-transporter-ATP-binding-protein
MPEIVRRPPHEIPVNKPDLKNPRGTLKRFLNYLKPHTILLIVVFLFVVLSSLMNVVTPYLIGKIIDEVFIPMAFEKLFRYLLILGSFYAIISLSFWIQGKIMLKLSQEIVFDLRKELFEKLQRIPIGFFDKTSHGDVISRIVNDTDNINNVLANSITQTFSGIITLAGAAFMMLKVNILLSLVTFSVIPLTLLATRIISQRTRRYFYENQRVLGELNGIIEEDISGLSVIKIFTREEKELEKFNKSNENLREIGVKAQIFSGILGPIMNMINNLGFAMVSGFGGWFALKGIVTVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIMDVEEENDDEKSVIISEAKGEIEFRNVWFSYDKEVPILKNVSFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDAGQILIDGVDIRKIKRVSLRSIIGIVLQDTILFSKTVKENIGYGNPDSTDNEIEKAAKLTHADHFIKHLPHGYNTILTDNGEDLSQGQRQLLSITRVFLANPKILILDEATSNIDTKTEKSIQTAMWKLMEGRTSIIIAHRLNTVKNADLIIVMKGGEIVEIGKHEELLQSKGFYHELFTNQYGILLEENES
>NC_009828.1|WP_012002263.1|218926_220660_-|ABC-transporter-ATP-binding-protein
MKVFLRYLKPYWLSTVLAPLFMVIEVICDLAQPTLLARIVDEGIARGNLQLVWKTGIFMLLVALIGAVGGIGCTIFASHASQNFGADLRRNLFKKVLSFSITNVNKFHTSSLITRLTNDVTQLQNLVMMLLRIVVRGPLLFIGGILMAISINAHLSSIFIFLIPPIIFLFLWLTKKGDLLFRKIQDSVDRVNAVVRENLLGVRVVRAFRREEYEKENFHKNNELLKNSMIKAFSLIVFALPVFIFIVNAGTIGVLWFGGVLVKKNQMEVGNIIAYTNYLMQIMFSLMMIGNILNFVVRAGASAKRVLGVLDEQPAIHELQNALYVPEIKGRVDFEDVEFRYSGDTSPVLKNVNFSVKSGEVIAILGETGSGKTTLMNLIPRLIDVTSGDVKIDDSDVRVLKLQNLRKYIAAVPQETNLFSGTVKENLKWGKEDATDEEVIKAAKIAQIHDFIINLPQGYDSYVERGGRNFSGGQKQRLSIARALVRKPKILILDDCTSSVDPITERKILEGLREYTKGCTTFIITQKISTALLADRILTLQEGKMVGFGTHEDLLRNCRAYREIYESQLGNGMINDA

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Crispr_ID: NC_009828_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009828_2

1131044-1134585

Orphan

III-A

Consensus_repeat	Method
GTTTCCATCCCTCTAAGGTTCGATTGAAAC	PILER-CR
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CRISPRCasFinder
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CRT

53 spacers

The CRISPR arrays of NC_009828_2

>merge|NC_009828|2|1131044-1134585|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCGAACCTTAGAGGGATGGAAACAAATTTTGGCCGTTTTCCCGGATGCGGTGGAGGAGGGTTTCAATCGAACCTTAGAGGGATGGAAACCCTATATAAAGACCTTCTGTGAATGCTTGTAGTGGAGTTTCAATCGAACCTTAGAGGGATGGAAACAGTGCTAATCCATATATCTCGCATGAATTTTTAGAGGTTTCAATCGAACCTTAGAGGGATGGAAACAATCCCTCCTATTCTTCTTTACTTGCCCAAGGGCATGTTTCAATCGAACCTTAGAGGGATGGAAACCAGGATATAACACCACGGCAATAGGTTACTATACACCGTTTCAATCGAACCTTAGAGGGATGGAAACTACAAGTTGCAGAAGACTTATCACCTGGCGAACAGCCGTTTCAATCGAACCTTAGAGGGATGGAAACATATCACAATATATTTCTGATGAATCCTTGGTTGTAGTTTCAATCGAACCTTAGAGGGATGGAAACCTCTTTTTCAACTGGGCAATACTCAAAGTAGGAGGTGTTTCAATCGAACCTTAGAGGGATGGAAACTAAGCTGAAATAAGGTCTTTCAGGTTAGCTACTTGTGTTTCAATCGAACCTTAGAGGGATGGAAACCATGGAAAAAATAATTATCCCAGTAAGTAAATCTCTGTTTCAATCGAACCTTAGAGGGATGGAAACGTATAGATCCTCAACATCGTCATAGATCCTTTCATCGTTTCAATCGAACCTTAGAGGGATGGAAACAAGTCGTCAAGATCCTCGTCCTCATATTCCTGTCCGTTTCAATCGAACCTTAGAGGGATGGAAACGTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTAGTTTCAATCGAACCTTAGAGGGATGGAAACTCGGCATGATGACCTGTTCGTACACCGCATCTTTAGTTTCAATCGAACCTTAGAGGGATGGAAACCTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTTGTTTCAATCGAACCTTAGAGGGATGGAAACAATCTTTTGGCAATAAACGCCAACAAAACCATGAAGAGTTTCAATCGAACCTTAGAGGGATGGAAACGTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTAGTTTCAATCGAACCTTAGAGGGATGGAAACTCGGCATGATGACCTGTTCGTACACCGCATCTTTAGTTTCAATCGAACCTTAGAGGGATGGAAACCTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTTGTTTCAATCGAACCTTAGAGGGATGGAAACAATCTTTTGGCAATAAACGCCAACAAAACCATGAAGAGTTTCAATCGAACCTTAGAGGGATGGAAACCGCTCTCCTTGTACCAAAATCTCAGTTCCAGCCTTGGTTTCAATCGAACCTTAGAGGGATGGAAACACATTCTGGACATTAAGAGAATGCCAGGAAAGAATAGTTTCAATCGAACCTTAGAGGGATGGAAACTAGCAAAGTCCAAAACTAACTCACCCTCATTTGTATGTTTCAATCGAACCTTAGAGGGATGGAAACAACATAATCACCGCATAAAGAATAACCATATATGGTGTTTCAATCGAACCTTAGAGGGATGGAAACTTAAGATTTGAATTGGTTCAAAAATTGAAGTGGTACAGTTTCAATCGAACCTTAGAGGGATGGAAACTTGGAGTATACGTATAAGTTGATCCAGTGATTGATACCGGTTTCAATCGAACCTTAGAGGGATGGAAACACGCACGGGCATAAAGAGCGAATTCCGTGGAGAGTTCGTTTCAATCGAACCTTAGAGGGATGGAAACATAGCAGGAGGAAGAATAAAAAGTATTCATTCGATTGTTTCAATCGAACCTTAGAGGGATGGAAACATCGATTGAGAGATCAGCTTTTAAAAACGGCCGAGTTTCAATCGAACCTTAGAGGGATGGAAACATGTTGTGCGAGCCCGAGAGATTCCACTTGATCCCTGTTTCAATCGAACCTTAGAGGGATGGAAACACGGGAGTATCGAAAAATTCACTCTCAGTAACACTTGTTTCAATCGAACCTTAGAGGGATGGAAACGAACGTTGCAAAAAAATCCAGAATTTCGCCGTGTGTTGTTTCAATCGAACCTTAGAGGGATGGAAACAGTGGTTGGCAAACACCAAAAACAAATTGGGATTATTAGTTTCAATCGAACCTTAGAGGGATGGAAACCAAATTTAGAATTTTTATTACGTTAACTTTTTCTGAGTTTCAATCGAACCTTAGAGGGATGGAAACCTTCTTATAATAAAATTCCACTTTGGTTGTGGGATAGTTTCAATCGAACCTTAGAGGGATGGAAACCATAATGGTGAATATGGTTGGCAGTCTATTTTCGTTGTTTCAATCGAACCTTAGAGGGATGGAAACTTGTTGTACACACTCATGAACTCCGCCATGATTTCAGTTTCAATCGAACCTTAGAGGGATGGAAACTTGGCTGTGTAGGTTGTGTAGGTTGTGGACTTAGTTGTTTCAATCGAACCTTAGAGGGATGGAAACATTGCATACGCAGAAACATATTTCGGATACAACTTATATGTTTCAATCGAACCTTAGAGGGATGGAAACTTTGGTCTGGTGTGTAGTTTGCATAAAGTAATGGATGTTTCAATCGAACCTTAGAGGGATGGAAACTAAAAAACATAACAACTGCAATACCTGCAATAACCCGTTTCAATCGAACCTTAGAGGGATGGAAACCTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTCGTTTCAATCGAACCTTAGAGGGATGGAAACAAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAACGTTTCAATCGAACCTTAGAGGGATGGAAACAACATATTCTGGTGTTTTTGCTTTTGCATTCTCTATGTTTCAATCGAACCTTAGAGGGATGGAAACCTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTCGTTTCAATCGAACCTTAGAGGGATGGAAACAAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAACGTTTCAATCGAACCTTAGAGGGATGGAAACAACATATTCTGGTGTTTTTGCTTTTGCATTCTCTATGTTTCAATCGAACCTTAGAGGGATGGAAACTAATGCGGCTCGTTGTAATAGCCTTTTTCACGAACAGTTTCAATCGAACCTTAGAGGGATGGAAACTTGCGAAGGACGTAGAGGAAAAGGATTGGAGTAACTGTTTCAATCGAACCTTAGAGGGATGGAAACTTCCAACCATCCTTTTCTTTGCTATTGCATGCTCCGTGTTTCAATCGAACCTTAGAGGGATGGAAACAAAAATATCATCCAGATAAATTAGGTAAAGAATATGACGTTTCAATCGAACCTTAGAGGGATGGAAACAAAATCGATCCTGCAGGTTTTGCAAAATTTTTATCCGTTTCAATCGAACCTTAGAGGGATGGAAACGTACCTAAAAAATCTGATGCATCTGGATCCCATTCTGGTTTCAATCGAACCTTAGAATATCAGAACT

>NC_009828|2|2|1131044-1134518|PILER-CR
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAATTTTGGCCGTTTTCCCGGATGCGGTGGAGGAGG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CCTATATAAAGACCTTCTGTGAATGCTTGTAGTGGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGCTAATCCATATATCTCGCATGAATTTTTAGAG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCCCTCCTATTCTTCTTTACTTGCCCAAGGGCAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAGGATATAACACCACGGCAATAGGTTACTATACACC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TACAAGTTGCAGAAGACTTATCACCTGGCGAACAGCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATATCACAATATATTTCTGATGAATCCTTGGTTGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTCTTTTTCAACTGGGCAATACTCAAAGTAGGAGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAGCTGAAATAAGGTCTTTCAGGTTAGCTACTTGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATGGAAAAAATAATTATCCCAGTAAGTAAATCTCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTATAGATCCTCAACATCGTCATAGATCCTTTCATC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGTCGTCAAGATCCTCGTCCTCATATTCCTGTCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CGCTCTCCTTGTACCAAAATCTCAGTTCCAGCCTTG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACATTCTGGACATTAAGAGAATGCCAGGAAAGAATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAGCAAAGTCCAAAACTAACTCACCCTCATTTGTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATAATCACCGCATAAAGAATAACCATATATGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTAAGATTTGAATTGGTTCAAAAATTGAAGTGGTACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGAGTATACGTATAAGTTGATCCAGTGATTGATACCG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGCACGGGCATAAAGAGCGAATTCCGTGGAGAGTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATAGCAGGAGGAAGAATAAAAAGTATTCATTCGATT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATCGATTGAGAGATCAGCTTTTAAAAACGGCCGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATGTTGTGCGAGCCCGAGAGATTCCACTTGATCCCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGGGAGTATCGAAAAATTCACTCTCAGTAACACTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GAACGTTGCAAAAAAATCCAGAATTTCGCCGTGTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGGTTGGCAAACACCAAAAACAAATTGGGATTATTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAAATTTAGAATTTTTATTACGTTAACTTTTTCTGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTATAATAAAATTCCACTTTGGTTGTGGGATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATAATGGTGAATATGGTTGGCAGTCTATTTTCGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGTTGTACACACTCATGAACTCCGCCATGATTTCA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGCTGTGTAGGTTGTGTAGGTTGTGGACTTAGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATTGCATACGCAGAAACATATTTCGGATACAACTTATAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTTGGTCTGGTGTGTAGTTTGCATAAAGTAATGGAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAAAAACATAACAACTGCAATACCTGCAATAACCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAATGCGGCTCGTTGTAATAGCCTTTTTCACGAACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGCGAAGGACGTAGAGGAAAAGGATTGGAGTAACT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTCCAACCATCCTTTTCTTTGCTATTGCATGCTCCGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAAATATCATCCAGATAAATTAGGTAAAGAATATGAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAATCGATCCTGCAGGTTTTGCAAAATTTTTATCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC

>NC_009828|2|2|1131044-1134585|CRISPRCasFinder
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAATTTTGGCCGTTTTCCCGGATGCGGTGGAGGAGG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CCTATATAAAGACCTTCTGTGAATGCTTGTAGTGGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGCTAATCCATATATCTCGCATGAATTTTTAGAG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCCCTCCTATTCTTCTTTACTTGCCCAAGGGCAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAGGATATAACACCACGGCAATAGGTTACTATACACC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TACAAGTTGCAGAAGACTTATCACCTGGCGAACAGCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATATCACAATATATTTCTGATGAATCCTTGGTTGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTCTTTTTCAACTGGGCAATACTCAAAGTAGGAGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAGCTGAAATAAGGTCTTTCAGGTTAGCTACTTGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATGGAAAAAATAATTATCCCAGTAAGTAAATCTCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTATAGATCCTCAACATCGTCATAGATCCTTTCATC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGTCGTCAAGATCCTCGTCCTCATATTCCTGTCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CGCTCTCCTTGTACCAAAATCTCAGTTCCAGCCTTG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACATTCTGGACATTAAGAGAATGCCAGGAAAGAATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAGCAAAGTCCAAAACTAACTCACCCTCATTTGTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATAATCACCGCATAAAGAATAACCATATATGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTAAGATTTGAATTGGTTCAAAAATTGAAGTGGTACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGAGTATACGTATAAGTTGATCCAGTGATTGATACCG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGCACGGGCATAAAGAGCGAATTCCGTGGAGAGTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATAGCAGGAGGAAGAATAAAAAGTATTCATTCGATT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATCGATTGAGAGATCAGCTTTTAAAAACGGCCGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATGTTGTGCGAGCCCGAGAGATTCCACTTGATCCCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGGGAGTATCGAAAAATTCACTCTCAGTAACACTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GAACGTTGCAAAAAAATCCAGAATTTCGCCGTGTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGGTTGGCAAACACCAAAAACAAATTGGGATTATTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAAATTTAGAATTTTTATTACGTTAACTTTTTCTGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTATAATAAAATTCCACTTTGGTTGTGGGATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATAATGGTGAATATGGTTGGCAGTCTATTTTCGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGTTGTACACACTCATGAACTCCGCCATGATTTCA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGCTGTGTAGGTTGTGTAGGTTGTGGACTTAGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATTGCATACGCAGAAACATATTTCGGATACAACTTATAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTTGGTCTGGTGTGTAGTTTGCATAAAGTAATGGAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAAAAACATAACAACTGCAATACCTGCAATAACCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAATGCGGCTCGTTGTAATAGCCTTTTTCACGAACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGCGAAGGACGTAGAGGAAAAGGATTGGAGTAACT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTCCAACCATCCTTTTCTTTGCTATTGCATGCTCCGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAAATATCATCCAGATAAATTAGGTAAAGAATATGAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAATCGATCCTGCAGGTTTTGCAAAATTTTTATCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTACCTAAAAAATCTGATGCATCTGGATCCCATTCTG
GTTTCAATCGAACCTTAGAATATCAGAACT

>NC_009828|2|2|1131044-1134585|CRT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAATTTTGGCCGTTTTCCCGGATGCGGTGGAGGAGG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CCTATATAAAGACCTTCTGTGAATGCTTGTAGTGGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGCTAATCCATATATCTCGCATGAATTTTTAGAG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCCCTCCTATTCTTCTTTACTTGCCCAAGGGCAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAGGATATAACACCACGGCAATAGGTTACTATACACC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TACAAGTTGCAGAAGACTTATCACCTGGCGAACAGCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATATCACAATATATTTCTGATGAATCCTTGGTTGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTCTTTTTCAACTGGGCAATACTCAAAGTAGGAGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAGCTGAAATAAGGTCTTTCAGGTTAGCTACTTGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATGGAAAAAATAATTATCCCAGTAAGTAAATCTCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTATAGATCCTCAACATCGTCATAGATCCTTTCATC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGTCGTCAAGATCCTCGTCCTCATATTCCTGTCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTTTCTACCGCGTTTGTGTTCTTCAAAAATCGGTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TCGGCATGATGACCTGTTCGTACACCGCATCTTTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTTCTAACTCCTTTTGTAAGCTTTTTCTTTTTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AATCTTTTGGCAATAAACGCCAACAAAACCATGAAGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CGCTCTCCTTGTACCAAAATCTCAGTTCCAGCCTTG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACATTCTGGACATTAAGAGAATGCCAGGAAAGAATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAGCAAAGTCCAAAACTAACTCACCCTCATTTGTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATAATCACCGCATAAAGAATAACCATATATGGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTAAGATTTGAATTGGTTCAAAAATTGAAGTGGTACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGAGTATACGTATAAGTTGATCCAGTGATTGATACCG
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGCACGGGCATAAAGAGCGAATTCCGTGGAGAGTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATAGCAGGAGGAAGAATAAAAAGTATTCATTCGATT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATCGATTGAGAGATCAGCTTTTAAAAACGGCCGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATGTTGTGCGAGCCCGAGAGATTCCACTTGATCCCT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ACGGGAGTATCGAAAAATTCACTCTCAGTAACACTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GAACGTTGCAAAAAAATCCAGAATTTCGCCGTGTGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AGTGGTTGGCAAACACCAAAAACAAATTGGGATTATTA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CAAATTTAGAATTTTTATTACGTTAACTTTTTCTGA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTATAATAAAATTCCACTTTGGTTGTGGGATA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CATAATGGTGAATATGGTTGGCAGTCTATTTTCGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGTTGTACACACTCATGAACTCCGCCATGATTTCA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGGCTGTGTAGGTTGTGTAGGTTGTGGACTTAGTT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	ATTGCATACGCAGAAACATATTTCGGATACAACTTATAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTTGGTCTGGTGTGTAGTTTGCATAAAGTAATGGAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAAAAAACATAACAACTGCAATACCTGCAATAACCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	CTTCTTTAGTTTCTTCCTTCTTCTCTTCAACCTTC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAGGTTAGAACTAATAACAGAATAGAACTTCTTGAAAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AACATATTCTGGTGTTTTTGCTTTTGCATTCTCTAT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TAATGCGGCTCGTTGTAATAGCCTTTTTCACGAACA
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTGCGAAGGACGTAGAGGAAAAGGATTGGAGTAACT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	TTCCAACCATCCTTTTCTTTGCTATTGCATGCTCCGT
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAAATATCATCCAGATAAATTAGGTAAAGAATATGAC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	AAAATCGATCCTGCAGGTTTTGCAAAATTTTTATCC
GTTTCAATCGAACCTTAGAGGGATGGAAAC	GTACCTAAAAAATCTGATGCATCTGGATCCCATTCTG
GTTTCAATCGAACCTTAGAATATCAGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009828.1\|WP_012003139.1\|1129813_1130557_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|293830
NC_009828.1\|WP_144313121.1\|1121339_1122173_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_009828.1\|WP_148202138.1\|1126641_1128543_+\|VWA-domain-containing-protein	unknown	unknown	unknown
NC_009828.1\|WP_012003134.1\|1123336_1124830_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_009828.1\|WP_012003149.1\|1144357_1145317_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NC_009828.1\|WP_012003144.1\|1138273_1139773_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NC_009828.1\|WP_041428418.1\|1142493_1143237_+\|protease-complex-subunit-PrcB-family-protein	unknown	unknown	gnl\|CDD\|379569
NC_009828.1\|WP_012003142.1\|1137356_1137728_+\|DUF1667-domain-containing-protein	unknown	unknown	gnl\|CDD\|377938
NC_009828.1\|WP_012003148.1\|1143270_1144365_+\|hypothetical-protein	unknown	unknown	unknown
NC_009828.1\|WP_012003146.1\|1141799_1142483_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NC_009828.1\|WP_012003141.1\|1136142_1137354_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NC_009828.1\|WP_012003131.1\|1120336_1121164_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NC_009828.1\|WP_012003135.1\|1124826_1125996_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_009828.1\|WP_012003140.1\|1134706_1136146_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223652
NC_009828.1\|WP_012003138.1\|1128544_1129798_-\|SLC45-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340871
NC_009828.1\|WP_012003130.1\|1119452_1120340_+\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NC_009828.1\|WP_012003133.1\|1122175_1123336_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_009828.1\|WP_012003145.1\|1139785_1141582_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NC_009828.1\|WP_012003136.1\|1126075_1126645_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NC_009828.1\|WP_012003143.1\|1137719_1138277_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|377296

Protein	Function_ID	Function_description	E-value
NC_009828.1\|WP_012003139.1\|1129813_1130557_-\|ribonuclease-Z	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	9.32478e-55
NC_009828.1\|WP_144313121.1\|1121339_1122173_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.40731e-58
NC_009828.1\|WP_012003138.1\|1128544_1129798_-\|SLC45-family-MFS-transporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81066e-101
NC_009828.1\|WP_012003134.1\|1123336_1124830_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	5.87767e-79
NC_009828.1\|WP_012003149.1\|1144357_1145317_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	2.84291e-144
NC_009828.1\|WP_012003144.1\|1138273_1139773_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NC_009828.1\|WP_012003142.1\|1137356_1137728_+\|DUF1667-domain-containing-protein	gnl\|CDD\|377938	pfam07892, DUF1667, Protein of unknown function (DUF1667). Hypothetical archaeal and bacterial proteins make up this family. A few proteins are annotated as being potential metal-binding proteins, and in fact the members of this family have four highly conserved cysteine residues, but no further literature evidence was found in this regard.	3.62413e-39
NC_009828.1\|WP_012003146.1\|1141799_1142483_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.25914e-128
NC_009828.1\|WP_012003141.1\|1136142_1137354_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	1.17288e-26
NC_009828.1\|WP_012003131.1\|1120336_1121164_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.62017e-58
NC_009828.1\|WP_012003135.1\|1124826_1125996_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_009828.1\|WP_012003140.1\|1134706_1136146_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223652	COG0579, COG0579, Predicted dehydrogenase [General function prediction only].	1.03682e-124
NC_009828.1\|WP_041428418.1\|1142493_1143237_+\|protease-complex-subunit-PrcB-family-protein	gnl\|CDD\|379569	pfam14343, PrcB_C, PrcB C-terminal. This domain is found at the C-terminus of Treponema denticola PrcB. PrcB interacts with the PrtP protease (dentilisin) and is required for the stability of the protease complex.	1.01263e-11
NC_009828.1\|WP_012003130.1\|1119452_1120340_+\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	2.6575e-98
NC_009828.1\|WP_012003133.1\|1122175_1123336_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.18752e-148
NC_009828.1\|WP_012003145.1\|1139785_1141582_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	9.09765e-11
NC_009828.1\|WP_012003136.1\|1126075_1126645_+\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.60834e-06
NC_009828.1\|WP_012003143.1\|1137719_1138277_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|377296	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalyzed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.	5.82798e-79

>NC_009828.1|WP_012003139.1|1129813_1130557_-|ribonuclease-Z
MRIAFLGTAAAITTENRDNTSFLVGDTLIECSGNAFGKMRKLGYNPLRLKNVIITHGHVDHVYGLPSLVEMMRLSGRENPLKIYVSEVFSNLVKTYLGMFNFMEKERRFPVEVEEIRYGFQLIDEDLIIEFFPVKHSVENFGLKIKSFDSIVVYSSDTEPCKEVIEQSFGADLLIHEATCSYLFSKRIEGHTCAEDAARIAQQSGVKILCLVHLGPDINNEKKLIDELKKFFLGDILIPGDLEKIIL
>NC_009828.1|WP_012003138.1|1128544_1129798_-|SLC45-family-MFS-transporter
MRFKYWKIFLLGFGFFGISVLWPLYNAYVPIFLKDFALPSFAVGIVMTIDNILAIIMLPYIGTLSDQTRTKLGRRKPYILIGAPAGALFFALIPVARNLKSLLLMMIIIIVMNISMALFRSPLIALMPDVTPSKYRSQANGIVNFMGGFGALLAYFAGKPLYDKNYAYPFFAGAIIMLIANILVLLFIRESSEYTIKSQENSKLFEIVRKGNRELFDNLRDVFRAKEKSLFFILVSILLWFIGFNALETFFTSYAKFHLNISESTGALILGVFSLTFMLFSIPAGWIGSKFGRKRTISIGLLILMICLTIIAVLSKLITDGMIINIFFVMFSISGIGWALINVNSLPMVVDMTRSEKAGGYTGLYYFFSMAANIFAPPLAGGFIDIAGYESLLFFSLIFIICSFITMRFVKRGEIVS
>NC_009828.1|WP_148202138.1|1126641_1128543_+|VWA-domain-containing-protein
MSVRCISMDLRSRLARRCQKNCCDHHRCVYRFRLWSELVFFSGCNTSMYAVDFALRETGIQLYYCQPEQNKMAQVELEESYSQLVNDRVRLSNFDALEKINNQVRRLSWPFDQREIELKNLPLVDSKYYFAWLSDWSEYDFVSKVEVKITLSGAGNIANFVYYPLYNPDATIAERVSEKDIALVLKDESGLSMLGKNNVSVSLYKVMGELDRMEAVTGESDENGVVNFGKRQVGRYYYMLYADGRPADRYDQLCYTARGWIEVGLDSATPTEMIAFTKSKSAELFRAFGLLRELRELEIYNDRIGTFVENAGEWLENLRKNGLIPVELEAVKRFNTALAAIVNCSGYACTVQTRASDDALKVVEKINGMIRKAEEIVEKLESAKQIIMTIVNTFIDIITGNWSGAASNLTIQELVDRLVNYVKNDLLDDIMETVEQKLAEVIRDPEKIIDYFQSYVKDWVKQKLSPDQIRDNVYNFVEEELVYEKFTSHMEQQIEKVLFETQKLVEENIGKHWDIDERSSLIRESFYQMRNDLMSDLFDVSYKALSEKDSIDDWESCLSTLRELIPLIVEFIELFEIRYPELSSIKAGLETLYEALDTIGTLTKTYELALKVDYLNPLSERIQQISEMVFQFK
>NC_009828.1|WP_012003136.1|1126075_1126645_+|VWA-domain-containing-protein
MRRAILLAVLFCTNFLLAREISLREFELWDRDGLVNSIWCSVTVKDGLSFVPDLSLNNFEITETAYDKYGDLIEERPVSFDNIYYQFDGEGFWEKSVNSDKLDIVFLIDCTGSMYERMEEIKEELLKFVDRLRANNTDFRIVVAEYSVEDEPGWPSGNEADRFLGPAMINEIKHEIQELGTAGEGWNFT
>NC_009828.1|WP_012003135.1|1124826_1125996_+|phosphopentomutase
MRVIAIVLDSVGIGEMPDSSEYGDQGSNTLVNTARAVGKLNLPNLAKMGLGNLDTIEGVPSMPAKGAYGVMLEKSPGKDSTTGHWELAGIILKKPFDLFPNGFPENLIKEFEKRTGRRVIGNKPASGTEIIKELGLEHEQTGALIVYTSADSVFQIAAKEEIVPVEELYRCCEIARDLLDEFGFKVGRVIARPFTGNYPDYVRTPRRHDYSLEPEDEMLLDVLVQSDIPVYGVGKIYDLYAGRGITESYKTDSNIDGIQKTIKLIMEKQHTCFIYTNLVDYDMKYGHRNDPHGYAKALEEFDFNLPEIWKNMKEDDFLFITADHGCDPTTPSTDHSRERVPILVCGSKVRKNVYLGIRESFADFGQTIADLFGVRKLNNGTSFKSLLLH
>NC_009828.1|WP_012003134.1|1123336_1124830_+|apolipoprotein-N-acyltransferase
MLWLFFSSFLTALSMPGFVAGCIVWFSLVPFLKSLEKKGPLFGALYGFLYFYAFSAINLYWVLPVLMENMPRTFGKFHALTGFLVFLLMLAFEALPFAAFGFLYGLLENSVKKHPIKEVLFTASAYTLFDFIRSLGEMGFTGGTLSDALYRDTGILQLAPIIGSYGLTFIIVAVNCWLYIIWRKSSRPIEKIVFVVLAINVISHLANIFLPLPHTSDQSLAAIQTNTSQDVKYNQSSYYLYEQFKPMLVELKDTLVVMPEDVFPFDPRGSDIAQQMKELCRQNNLQILIGTLSVNSKIQNSVFLVNELGFVSKYSKVKLFPFVERLPYEKVFGIFSFLQGLNYLDPGEEYEPLTVENYPLIGVQICFESYFSEPSRQLVKKGARVLLVCTNDGWFSFDTALKQHFAKAVIRAVETRRQVIQVSNAGITGSIDPYGRIVEVARIRSFEKVDFDIIPNEAITIYTKTGDLVIWFCLGIVVFMLFFPGERTLGTKRRIWK
>NC_009828.1|WP_012003133.1|1122175_1123336_+|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MIPLSKPYLTDVEIETIMNVMKSDRLSMGEYTNLFERKIASVANVNYAVAVNSGTSALHLILRALGVEEFDFMLVPSFTFVASANVALFERAIPVFVDIDERTYNMDPDALEKLLRDIERGCVHIGNNRVDIKKVRFLMTVDVFGQPVNYDRVLSIAHDWNLKVIEDSCEALGSEYRARPCGSFGEAGAFAFYPNKQITTGEGGIIVTNNKELAMLCKSMRNQGRGEEEDWLNHVRLGFNYRIDELSAALGYAQLTHLEEILEKRNNVALSYNQLLSRYNWVQIPHIEDYTTKIGWFVYVVKLDEKINRDRVMDYMNKRGIQVRNYFTPIHLQPFYRKLFGFSEGMLPVTERVSKSTLALPFYTTLTLQEQETVIEILKEAVERVG
>NC_009828.1|WP_144313121.1|1121339_1122173_+|Cof-type-HAD-IIB-family-hydrolase
MKMVKLVCIDLDGTLLNQEKKVSSQDKTAIELARKKGIKITVMTGRSYYSALPYVKEIGLNIPVVFQNGALIATPSLSDIFRCLLLPSKVALYAVELSFKYGLYPIVYESFFSHKDMFVKGEYCGAFNSYLIFNSQRLNKVDNLFQILKSRDEIAEIAVIGKEDTAELFLEQLCEQTDEFTSIKNQHIDGEVFLEIFSKGVGKEIALDFLLELFHLNADEVMYIGDNYNDLGVMQKVGLPVAMSNAPDEVKKYARFITASNDESGVSLAIKKFLMEV
>NC_009828.1|WP_012003131.1|1120336_1121164_+|DegV-family-protein
MKAVVFDSSIDVPVGYEFKVPVFMLPLNVYVDGKEYRDKVNITEEEFYSQAILGKEVRTSLPNFSETVELLTKLSKEYDHIYIVTISSKLSGTWNMIRLVLQQFDIKNATLIDSKSGSVKSFYVVHRLINDILNEIEISEDIFRKYIEESLLLFTVTSLDYLEKGGRIGKAKALLGKLLRIKPILSTDTDGQVHSTGSARSMKHVIEIIAEQAKKFADFEKYVVVGGYGLKQMKEHLDRLLSFFPAGSLVGISRIGPAVSAHVGPEVFGLVIGKA
>NC_009828.1|WP_012003130.1|1119452_1120340_+|acetamidase/formamidase-family-protein
MKKVSSTNLVYAFSSSMSPVLEVASGDQIVFETIDALGGQIKFEGDVINLDFSKVNPATGPVFIKGAMPGNTLKVKILKIDLAEEGVIVCEEGFGVFPELVKGFKAKMLRIKDGFVRFDKLSIPANPMIGVIGVAPENGHFTTGTAYKHGGNMDTKYVKTGSAVYLPIFQPGACLALGDVHAAMADGEVCVSACEVCANVTVEVELINYEIEWPLIETESGFFIVVSMGTVEEALKEVTYQAVKFLSRKLNLSMNSAYMLASLVVDIQISQLVDPNKTVRAYIPKYLFDGKGEIM
>NC_009828.1|WP_012003140.1|1134706_1136146_+|NAD(P)/FAD-dependent-oxidoreductase
MKVVVIGGGVVGALIVRELSMYDLEITLIEKNLDIGWGVTKANSAILHAGYDDPIGSVRAKFCAKGNELYTQLAKELDFEIKRIGSYVIAFDEQELDTLKKLLRQGEVNGVPGLEIHEKEIILEKEPNLSKEIKYGLWAPTAGITEPWMIAIAAVENAVDNGAKLILGEKVVDFEKHYDRITKVITDKSSYEADVVINAAGLFADEIAELAGAEYVPLHPRRGEYILLDKKIGNMVSSVIFPTPTILSKGILVLPTIDGGLLLGPTAVDLASDMKDNLSTTSEGLKEIISFTKRFVPSLDFSQTVKTFSGLRPESPQKDFFINNSERVKNFINIMAMRSPGLTAAPAIAKHVVEEIIQERLKISLSARKDFNPIRKGIKSFSKLSPKEWQKHVEQNPLAGRLICYCNEVTEAEIVEAIKRGARTLDGVKFRTRAMFGRCQGGFCSIKIMKILERELNVDMSQIVQKSYNSWIVSGRVRE
>NC_009828.1|WP_012003141.1|1136142_1137354_+|FAD-dependent-oxidoreductase
MKTDVLVIGAGAAGMAAALSAAKMGASVVLVDRDEILGGILNQCIHNGFGLHYFKQELTGPEYAERFLSMINNNKIEVLTDCHVHKLSPDKRAILVSPKGIFELETKAIVYASGARERPFGALMIPGDRPSGIFTAGVAQKYVNIENRLIGKRALILGSGDIGMIMARRLTLEGIEVVAVVERLPYFGGLLRNVIQCLEDYNIPLLLSSTITEVRGKERLSEVVVAQVDENYKPIPGTEKIFKVDTLVLSVGLIPQVELLQGMVDFNKNSKGVLCSNIAQSTNEWIFAAGNCTIIYDLVDYVTMEGEKAGKYAALYAQGEKFDSGIPIEAGENVGVLFPNRYVGLEDLTLYVRSNKPIEKATITVGEFEKVFEDIVPSEMIRIVVPRKKIDSFQKLTVSLREE
>NC_009828.1|WP_012003142.1|1137356_1137728_+|DUF1667-domain-containing-protein
MNKIVCVQCPVGCKIKFEQQDGKIIKIDGNRCPRGIAYLHDELKEPRRIVPTSVKVINGVFPLVSVKTSKPVPKKYISELMNEIKKISVQAPVKSGDVILKNVFGTGADIIATRTVPQKQGSN
>NC_009828.1|WP_012003143.1|1137719_1138277_-|glycerol-3-phosphate-responsive-antiterminator
MKNYFEYPIVPALRDEQQIKKALSCKATSVFLLTGDIVDLQQIIQTFHNSSKFVFVHIDLVKGLGRDEAAVNFLKYQLKADGLITTKGNLVNMAKKIGLISIQRIFLLDSQSLITGIAQAKSHKPEYVEVLPGLIPDLLKQINDETSISVITGGLIKTVDQAKFALARGAIAVSTSEDSLWNISI
>NC_009828.1|WP_012003144.1|1138273_1139773_-|glycerol-kinase-GlpK
MAEKYILALDQGTTSSRAIIFNQAGETVCMVNQEFPQLYPEPGWVEHDPVDIIESQISVAKKAIEIASINPDQIAAIGVTNQRETTIVWDKNTSKPVYNAIVWQCRRTASMCDQFKKLGYEDTIRKKTGLVLDAYFSATKLKWILDNVEGARQKAERGELLFGTVDSWLIWNLTGGKIHATDYSNASRTMLFNIHSLNWDEELLELFNIPEQMLPDVLPSSTVYGYTHKEIFGVEIPICGNAGDQQAALFGQICCEPGMVKNTYGTGCFILMNTGNKIVDSKHGLLTTIGWVLNDKSMCYALEGSVFSAGATVQWLRDGLKIVEKASDTEYLAKSVKDSAGVYFVPAFVGLGAPYWDMYARGTIIGITRGCTREHIVRAALESIAYQTRDVVEVMSEESGIKLHCLRVDGGASANDFLMQFQADILGVPVERPTVSETTALGAAYLAGLAVGYWKDHSEIKKQWRLDRRFEPQMDPETREELYKKWKNAVTRSLGWVEK
>NC_009828.1|WP_012003145.1|1139785_1141582_-|alpha/beta-fold-hydrolase
MKKAVGWLLLSLLIVFMGSLIAFLVQTNFTAVKVKEVKIASEDGKILSAFLFIPKGVSAENPAPAVLTMHGYINSKETQSGFNIEFARRGYVVLAMDMAGHGYSEQVKGGVANPARGADTGLLYLASLPFVDKNNIAVEGHSMGGWSVLSAAGKYPELVKTVILEGSSSETYGAPKVTAESGFNFAVVFSKYDEFSQLMWGVKIPSDIVKTEKLKTAFGVTEDVVVGKLYGSFENESARKLYIPNCTHPGDHLSKEAIGYAIEFLQNSITPPKFIDPNDQIWPWKEFGTLLGLIGGIMFMMSYGVCMLKTEYFSSLAGKPVVFQTKNTILDKIAWWIGFALITSIPAITFFKFQQPGGRSPAPTSFWPQSLTIGFARWATFNALIAICLFVVWHFIYHRKIGGNLSTYGLITDVQNKKFSLKQLWKAFAFAVCIVFATHIVLSMVQWAFKVDFRWWVIALKPMDFSRFLIFLRYLPPFAFFAFVNALVLNGQLKAKQFKSESVSTISWMISSALANCLGIAILVILQVGKLYTTQTLFFPTQSLLGIVAYQFVFLTALSGIISSFFYRRTGSIYVGAFINSLFITWYIVAGQAIQFAS
>NC_009828.1|WP_012003146.1|1141799_1142483_+|metal-dependent-hydrolase
MKALYLGHAAVLLQTGERNILIDPFINENPSCPIKVQDLPKIHYILVTHGHGDHLGDTVEIAKRDSSTVITNFELSSLISRHGISTHPMHIGGRYTFEFGSVKLTPALHGSSISEGDTPVYAGNPCGFLIEIHDKKIYHAGDTGLTKDMELLRRENIDLAFLPIGGNFVMDLWDAVEAVKMIYPEIVVPIHYNTWEVIKSDPAIFQKEVEKLGLKCRALKPGESIEL
>NC_009828.1|WP_041428418.1|1142493_1143237_+|protease-complex-subunit-PrcB-family-protein
MRILSSIFLLIGVLAMSNFIYYVPVNFTFPDEFYERVGSRTANFQYIVLSKSNCFAIILKGWLFQPAEVVQPKSFIVEVTTEDGFYQIKIPPVRKGIYLNLPEHLFVLPENTKKVSVNSIEIPLFSLEYSVEETRGRDTPGIEILNSSFEPSSVFDYGEQIFVKVSAGRKNTGGYRVSVDSLNIEGRTIKISAHVESPSPNTPVIQVITYPAALIKIDGPLDAGEYKVICTLSDSQNVQFEVEFTVE
>NC_009828.1|WP_012003148.1|1143270_1144365_+|hypothetical-protein
MNVYDFEFKNGTLFKINSHTIHSYVEKVDFGYKIIPKVPCDQKIEAFRINCDKAKVFCDTAIVGENYVVGFLKQNTLISIEKIQNNFIAYVEPGQGNDLDPIVILHGYENNFLIKEYVRLVSQENNITKSVKPLKVFFAASNKLEKVVGDAKKYNYHVIMAKDIDDKGNFVNICHKEGFLAGIEATFNLNKLEQMRSLGFDFFIVSFEKNSYKDIAAARAILKNSILVAKNIPPLAAAGLADGIVLNGLNVNNLILYSLFNNSLVRFYIEITAQNKDLLKISSLLNYGLVCSEIFETYYPQSVEIKKIFDGFEAICLSEEPKKLTMENGNIRVKNVANSGLFKSTVVRDDGRFFHFYRTGDKGV
>NC_009828.1|WP_012003149.1|1144357_1145317_+|galactose-1-phosphate-uridylyltransferase
MFELRYNPLTDEWIIVSAETQKRPVQPSQKSCPICVGGIELPEDYDLVAFENRFPSLKKNPPEIEQDGFFKKDRSFGICEVVVYTKDHNTALPGMPVQQIEKLVNMWIDRTVELSKYEFIKYVFIFENRGKEVGASLPHPHGQIYGFPFLPKRIQVKLDSFRKYYKANKKCPICQIVDVELQRKERLVYETDNFVALVPFYARFPFEIHIYPKKHVGALYELSLEEQRDFALTLKVVTAKYDNLFDQEFPYMMMFFQKPFNMNDDGLFHFHVEFNPPKRDKDKIKWMASVETGTWTFINPVVPEEAAKMLRNTEVEGIE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009828_1	1.3\|205692\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	205692-205728	37	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	916127-916163	7	0.811
NC_009828_1	1.14\|206426\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	206426-206462	37	NZ_AP017974	Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067	8917-8953	8	0.784
NC_009828_1	1.14\|206426\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	206426-206462	37	NZ_AP017974	Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067	29054-29090	8	0.784
NC_009828_1	1.14\|206426\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	206426-206462	37	NZ_AP017974	Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067	49201-49237	8	0.784
NC_009828_1	1.14\|206426\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	206426-206462	37	CP033375	Lactobacillus fermentum strain DR9 plasmid unnamed4, complete sequence	23752-23788	8	0.784
NC_009828_1	1.14\|206426\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	206426-206462	37	NZ_CP034100	Lactobacillus fermentum strain LMT2-75 plasmid p1, complete sequence	5121-5157	8	0.784
NC_009828_2	2.43\|1133853\|38\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	1133853-1133890	38	MT774392	CrAssphage cr128_1, complete genome	74313-74350	8	0.789
NC_009828_2	2.46\|1134052\|38\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	1134052-1134089	38	MT774392	CrAssphage cr128_1, complete genome	74313-74350	8	0.789
NC_009828_1	1.28\|207354\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207354-207390	37	AY940168	Prochlorococcus phage P-SSM4, complete genome	170321-170357	10	0.73
NC_009828_1	1.28\|207354\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207354-207390	37	JF974306	Cyanophage P-SS1 strain P-SS1, * SEQUENCING IN PROGRESS *, 2 unordered pieces	91474-91510	10	0.73
NC_009828_1	1.28\|207354\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207354-207390	37	HQ634176	Cyanophage P-RSM3 genomic sequence	94125-94161	10	0.73
NC_009828_1	1.30\|207487\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207487-207523	37	NZ_CP030248	Staphylococcus epidermidis strain CSF41498 plasmid pCSF41498_2, complete sequence	10510-10546	12	0.676
NC_009828_1	1.30\|207487\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207487-207523	37	NZ_CP034116	Staphylococcus epidermidis strain CDC121 plasmid pSTA481, complete sequence	6483-6519	12	0.676
NC_009828_1	1.30\|207487\|37\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	207487-207523	37	NZ_CP034113	Staphylococcus epidermidis strain CDC120 plasmid pSTA492, complete sequence	20386-20422	12	0.676
NC_009828_2	2.29\|1132926\|34\|NC_009828\|PILER-CR,CRISPRCasFinder,CRT	1132926-1132959	34	KT997864	Uncultured Mediterranean phage uvDeep-CGR2-KM21-C345, complete genome	2054-2087	12	0.647

1. spacer 1.3|205692|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.811

--cagttcagaagcttcaagagcaatatcaaactgctgt	CRISPR spacer
accaatc--gcagcttgaatagcaatatcaaactgctgt	Protospacer
  **.*.  * ***** ** *******************

2. spacer 1.14|206426|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017974 (Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067) position: , mismatch: 8, identity: 0.784

tgaaagaacaaagagaatatttagctgaaaaatatcc----	CRISPR spacer
tgaaggaacaaagataatatttagct----aacttccacaa	Protospacer
****.********* ***********    **. ***

3. spacer 1.14|206426|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017974 (Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067) position: , mismatch: 8, identity: 0.784

tgaaagaacaaagagaatatttagctgaaaaatatcc----	CRISPR spacer
tgaaggaacaaagataatatttagct----aacttccacaa	Protospacer
****.********* ***********    **. ***

4. spacer 1.14|206426|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017974 (Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067) position: , mismatch: 8, identity: 0.784

tgaaagaacaaagagaatatttagctgaaaaatatcc----	CRISPR spacer
tgaaggaacaaagataatatttagct----aacttccacaa	Protospacer
****.********* ***********    **. ***

5. spacer 1.14|206426|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to CP033375 (Lactobacillus fermentum strain DR9 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.784

tgaaagaacaaagagaatatttagctgaaaaatatcc----	CRISPR spacer
tgaaggaacaaagataatatttagct----aacttccacaa	Protospacer
****.********* ***********    **. ***

6. spacer 1.14|206426|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034100 (Lactobacillus fermentum strain LMT2-75 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.784

tgaaagaacaaagagaatatttagctgaaaaatatcc----	CRISPR spacer
tgaaggaacaaagataatatttagct----aacttccacaa	Protospacer
****.********* ***********    **. ***

7. spacer 2.43|1133853|38|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 8, identity: 0.789

aaggttagaactaataacagaatagaacttcttgaaac	CRISPR spacer
gggaatagaactaataacagaatagaaaatcttgaatg	Protospacer
..*. **********************  *******

8. spacer 2.46|1134052|38|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 8, identity: 0.789

aaggttagaactaataacagaatagaacttcttgaaac	CRISPR spacer
gggaatagaactaataacagaatagaaaatcttgaatg	Protospacer
..*. **********************  *******

9. spacer 1.28|207354|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to AY940168 (Prochlorococcus phage P-SSM4, complete genome) position: , mismatch: 10, identity: 0.73

cgcctgctgaagtgtctcatatttttgctgtagctct	CRISPR spacer
cacctgctgaagtgtcaaatatttttgcaaatctttt	Protospacer
*.**************  ********** .   .*.*

10. spacer 1.28|207354|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to JF974306 (Cyanophage P-SS1 strain P-SS1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces) position: , mismatch: 10, identity: 0.73

cgcctgctgaagtgtctcatatttttgctgtagctct	CRISPR spacer
cacctgctgaagtgtcaaatatttttgcaaatctttt	Protospacer
*.**************  ********** .   .*.*

11. spacer 1.28|207354|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to HQ634176 (Cyanophage P-RSM3 genomic sequence) position: , mismatch: 10, identity: 0.73

cgcctgctgaagtgtctcatatttttgctgtagctct	CRISPR spacer
cacctgctgaagtgtcaaatatttttgcaaatctttt	Protospacer
*.**************  ********** .   .*.*

12. spacer 1.30|207487|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030248 (Staphylococcus epidermidis strain CSF41498 plasmid pCSF41498_2, complete sequence) position: , mismatch: 12, identity: 0.676

ttccactatatccttcaattcattcaaatcatcgatg	CRISPR spacer
gttatttatatcattcaaatcattcaaatcattatca	Protospacer
 *.  .****** ***** *************.. ..

13. spacer 1.30|207487|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034116 (Staphylococcus epidermidis strain CDC121 plasmid pSTA481, complete sequence) position: , mismatch: 12, identity: 0.676

ttccactatatccttcaattcattcaaatcatcgatg	CRISPR spacer
gttatttatatcattcaaatcattcaaatcattatca	Protospacer
 *.  .****** ***** *************.. ..

14. spacer 1.30|207487|37|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034113 (Staphylococcus epidermidis strain CDC120 plasmid pSTA492, complete sequence) position: , mismatch: 12, identity: 0.676

ttccactatatccttcaattcattcaaatcatcgatg	CRISPR spacer
gttatttatatcattcaaatcattcaaatcattatca	Protospacer
 *.  .****** ***** *************.. ..

15. spacer 2.29|1132926|34|NC_009828|PILER-CR,CRISPRCasFinder,CRT matches to KT997864 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C345, complete genome) position: , mismatch: 12, identity: 0.647

atcgattgagagatcagcttttaaaaacggccga	CRISPR spacer
taagattgagaaatcaggttttaaaaagaaatac	Protospacer
   ********.***** ********* .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1432959 : 1442646

Hokovirus(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012003405.1\|1432959_1433718_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-27	31.4
WP_012003406.1\|1433730_1434969_-	PhoH family protein	A0A172JHY3	Bacillus_phage	8.6e-60	35.9
WP_012003407.1\|1434962_1435529_-	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.7e-10	32.3
WP_012003408.1\|1435534_1436317_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_012003409.1\|1436414_1437881_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	4.9e-22	28.4
WP_012003410.1\|1437884_1438748_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_012003411.1\|1438748_1439108_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_028843904.1\|1439107_1440037_+\|tRNA	tRNA pseudouridine(55) synthase TruB	A0A1V0SF38	Hokovirus	4.1e-06	26.6
WP_012003413.1\|1440033_1440777_+	FAD synthetase family protein	NA	NA	NA	NA
WP_012003414.1\|1440777_1442646_+	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	9.7e-31	28.8

DBSCAN-SWA_2

1984857 : 1992193

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012003940.1\|1984857_1985478_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-24	36.3
WP_012003941.1\|1985474_1986488_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.6e-74	45.4
WP_012003942.1\|1986493_1987885_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.2e-56	33.9
WP_012003943.1\|1987884_1990059_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-153	41.3
WP_012003944.1\|1990045_1990750_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_012003945.1\|1990746_1991001_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_012003946.1\|1991012_1991711_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	2.6e-37	39.6
WP_012003947.1\|1991707_1992193_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.1e-24	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009828

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection